FFCP PHASE1:Hg19::chr12:120884222..120884286,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=283459 | |EntrezGene=283459 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=25068 | |HGNC=25068 | ||
|TSSclassifier=strong | |||
|UniProt=F8VRU3,O43716 | |UniProt=F8VRU3,O43716 | ||
|association_with_transcript=0bp_to_ENST00000548171,ENST00000551765,NM_176818,NR_033684,uc010szi.1_5end | |association_with_transcript=0bp_to_ENST00000548171,ENST00000551765,NM_176818,NR_033684,uc010szi.1_5end | ||
|cluster_id=chr12:120884222..120884286,+ | |||
|description=CAGE_peak_1_at_GATC_5end | |description=CAGE_peak_1_at_GATC_5end | ||
|id=chr12:120884222..120884286,+ | |id=chr12:120884222..120884286,+ | ||
|ontology_enrichment_celltype=CL:0000066!2.10e-17!254;CL:0000220!2.23e-08!246;CL:0002321!4.03e-08!248 | |ontology_enrichment_celltype=CL:0000066!2.10e-17!254;CL:0000220!2.23e-08!246;CL:0002321!4.03e-08!248 | ||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,3.13e-17,253;CL:0002321,3.98e-08,250 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:162!7.72e-17!235;DOID:14566!8.33e-17!239;DOID:0050687!4.47e-16!143;DOID:305!2.62e-13!106 | |ontology_enrichment_disease=DOID:162!7.72e-17!235;DOID:14566!8.33e-17!239;DOID:0050687!4.47e-16!143;DOID:305!2.62e-13!106 | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:162,7.72e-17,235;DOID:14566,8.33e-17,239;DOID:0050687,4.47e-16,143;DOID:305,2.62e-13,106 | |||
|ontology_enrichment_uberon=UBERON:0000481!2.19e-16!347;UBERON:0000064!2.52e-14!219;UBERON:0000119!3.60e-14!312;UBERON:0000483!3.61e-14!309;UBERON:0000475!1.17e-13!365;UBERON:0000063!4.54e-13!97;UBERON:0000477!6.31e-11!286;UBERON:0003075!4.07e-10!86;UBERON:0007284!4.07e-10!86;UBERON:0002346!4.50e-10!90;UBERON:0000033!1.36e-09!123;UBERON:0003056!3.27e-09!61;UBERON:0000153!5.40e-09!129;UBERON:0007811!5.40e-09!129;UBERON:0001049!1.06e-08!57;UBERON:0005068!1.06e-08!57;UBERON:0006241!1.06e-08!57;UBERON:0007135!1.06e-08!57;UBERON:0000025!1.33e-08!194;UBERON:0000072!6.43e-08!46;UBERON:0004111!7.02e-08!241;UBERON:0000924!1.04e-07!173;UBERON:0006601!1.04e-07!173;UBERON:0003104!1.11e-07!238;UBERON:0009142!1.11e-07!238;UBERON:0002616!1.25e-07!59;UBERON:0004121!1.26e-07!169;UBERON:0008947!2.17e-07!38;UBERON:0003258!2.17e-07!38;UBERON:0001007!2.59e-07!155;UBERON:0001555!2.59e-07!155;UBERON:0007026!2.59e-07!155;UBERON:0000073!3.69e-07!94;UBERON:0001016!3.69e-07!94;UBERON:0000955!4.12e-07!69;UBERON:0006238!4.12e-07!69;UBERON:0001041!6.75e-07!98;UBERON:0001004!6.96e-07!72;UBERON:0004119!7.80e-07!169;UBERON:0000925!7.80e-07!169;UBERON:0006595!7.80e-07!169;UBERON:0004921!8.00e-07!129;UBERON:0004185!8.00e-07!129;UBERON:0001893!8.41e-07!34;UBERON:0001048!9.14e-07!168 | |||
|ontology_enrichment_uberon_v019=UBERON:0000072;6.87e-09;37!UBERON:0001737;9.48e-07;9!UBERON:0001557;9.48e-07;9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000483,3.29e-14,306;UBERON:0000119,3.29e-14,309;UBERON:0011216,9.02e-13,223;UBERON:0003075,9.49e-11,82;UBERON:0007284,9.49e-11,82;UBERON:0002346,1.12e-10,86;UBERON:0010371,1.43e-10,104;UBERON:0003056,1.14e-09,61;UBERON:0001049,5.15e-09,56;UBERON:0005068,5.15e-09,56;UBERON:0006241,5.15e-09,56;UBERON:0007135,5.15e-09,56;UBERON:0000073,9.88e-09,53;UBERON:0002616,9.88e-09,53;UBERON:0000025,1.30e-08,192;UBERON:0010314,3.63e-08,132;UBERON:0000072,4.59e-08,47;UBERON:0004111,1.47e-07,240;UBERON:0008947,2.17e-07,38;UBERON:0003258,2.17e-07,38;UBERON:0001016,2.37e-07,89;UBERON:0000955,2.42e-07,68;UBERON:0006238,2.42e-07,68;UBERON:0004121,2.73e-07,171;UBERON:0000924,2.73e-07,171;UBERON:0006601,2.73e-07,171;UBERON:0000065,7.48e-07,54;UBERON:0001893,8.41e-07,34 | |||
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| ||
|short_description=p1@GATC | |short_description=p1@GATC | ||
}} | }} |
Latest revision as of 20:22, 16 September 2015
Short description: | p1@GATC |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_GATC_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000548171, ENST00000551765, NM_176818, NR_033684, uc010szi.1_5end |
EntrezGene: | GATC |
HGNC: | 25068 |
UniProt: | F8VRU3O43716 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 3.13e-17 | 253 |
embryonic cell | 3.98e-08 | 250 |
Ontology term | p-value | n |
---|---|---|
epithelium | 3.29e-14 | 306 |
cell layer | 3.29e-14 | 309 |
organ system subdivision | 9.02e-13 | 223 |
neural plate | 9.49e-11 | 82 |
presumptive neural plate | 9.49e-11 | 82 |
neurectoderm | 1.12e-10 | 86 |
ecto-epithelium | 1.43e-10 | 104 |
pre-chordal neural plate | 1.14e-09 | 61 |
neural tube | 5.15e-09 | 56 |
neural rod | 5.15e-09 | 56 |
future spinal cord | 5.15e-09 | 56 |
neural keel | 5.15e-09 | 56 |
regional part of nervous system | 9.88e-09 | 53 |
regional part of brain | 9.88e-09 | 53 |
tube | 1.30e-08 | 192 |
structure with developmental contribution from neural crest | 3.63e-08 | 132 |
segment of respiratory tract | 4.59e-08 | 47 |
anatomical conduit | 1.47e-07 | 240 |
respiratory primordium | 2.17e-07 | 38 |
endoderm of foregut | 2.17e-07 | 38 |
nervous system | 2.37e-07 | 89 |
brain | 2.42e-07 | 68 |
future brain | 2.42e-07 | 68 |
ectoderm-derived structure | 2.73e-07 | 171 |
ectoderm | 2.73e-07 | 171 |
presumptive ectoderm | 2.73e-07 | 171 |
respiratory tract | 7.48e-07 | 54 |
telencephalon | 8.41e-07 | 34 |
Ontology term | p-value | n |
---|---|---|
cancer | 7.72e-17 | 235 |
disease of cellular proliferation | 8.33e-17 | 239 |
cell type cancer | 4.47e-16 | 143 |
carcinoma | 2.62e-13 | 106 |