FFCP PHASE1:Hg19::chr10:97849949..97849982,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene= | |EntrezGene= | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA | |||
|HGNC= | |HGNC= | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENST00000416301,ENST00000444375,ENST00000452728,ENST00000454638,ENST00000458228_5end | |association_with_transcript=0bp_to_ENST00000416301,ENST00000444375,ENST00000452728,ENST00000454638,ENST00000458228_5end | ||
|cluster_id=chr10:97849949..97849982,- | |||
|description=CAGE_peak_1_at_ENST00000416301_5end,CAGE_peak_1_at_ENST00000444375_5end,CAGE_peak_1_at_ENST00000452728_5end,CAGE_peak_1_at_ENST00000454638_5end,CAGE_peak_1_at_ENST00000458228_5end | |description=CAGE_peak_1_at_ENST00000416301_5end,CAGE_peak_1_at_ENST00000444375_5end,CAGE_peak_1_at_ENST00000452728_5end,CAGE_peak_1_at_ENST00000454638_5end,CAGE_peak_1_at_ENST00000458228_5end | ||
|id=chr10:97849949..97849982,- | |id=chr10:97849949..97849982,- | ||
|ontology_enrichment_celltype=CL:0000037!9.96e-20!172;CL:0000566!9.96e-20!172;CL:0000988!3.48e-19!182;CL:0000738!5.11e-18!140;CL:0002032!1.68e-17!165;CL:0000837!1.68e-17!165;CL:0002087!1.16e-16!119;CL:0002031!1.25e-15!124;CL:0000838!3.37e-14!52;CL:0000542!9.35e-14!53;CL:0000051!9.35e-14!53;CL:0000945!9.47e-10!24;CL:0000826!9.47e-10!24;CL:0002057!1.40e-07!42;CL:0000791!4.46e-07!18;CL:0000789!4.46e-07!18;CL:0002420!4.46e-07!18;CL:0002419!4.46e-07!18;CL:0000790!4.46e-07!18;CL:0000860!5.56e-07!45 | |ontology_enrichment_celltype=CL:0000037!9.96e-20!172;CL:0000566!9.96e-20!172;CL:0000988!3.48e-19!182;CL:0000738!5.11e-18!140;CL:0002032!1.68e-17!165;CL:0000837!1.68e-17!165;CL:0002087!1.16e-16!119;CL:0002031!1.25e-15!124;CL:0000838!3.37e-14!52;CL:0000542!9.35e-14!53;CL:0000051!9.35e-14!53;CL:0000945!9.47e-10!24;CL:0000826!9.47e-10!24;CL:0002057!1.40e-07!42;CL:0000791!4.46e-07!18;CL:0000789!4.46e-07!18;CL:0002420!4.46e-07!18;CL:0002419!4.46e-07!18;CL:0000790!4.46e-07!18;CL:0000860!5.56e-07!45 | ||
|ontology_enrichment_celltype_v019=CL:0000945;5.84e-10;24!CL:0000542;1.75e-08;53!CL:0002087;2.15e-07;104!CL:0000791;2.82e-07;18!CL:0000789;2.82e-07;18!CL:0002419;2.82e-07;18 | |||
|ontology_enrichment_celltype_v019_2=CL:0000037,1.02e-20,168;CL:0000988,1.36e-20,177;CL:0000738,3.90e-19,136;CL:0002032,2.02e-18,161;CL:0000837,2.02e-18,161;CL:0002087,6.10e-18,115;CL:0002031,1.05e-16,120;CL:0000838,3.65e-14,52;CL:0000542,1.01e-13,53;CL:0000051,1.01e-13,53;CL:0000945,7.58e-10,24;CL:0000826,7.58e-10,24;CL:0000860,1.19e-07,42;CL:0002057,1.19e-07,42;CL:0000791,3.83e-07,18;CL:0000789,3.83e-07,18;CL:0002420,3.83e-07,18;CL:0002419,3.83e-07,18;CL:0000790,3.83e-07,18;CL:0000763,4.57e-07,108;CL:0000049,4.57e-07,108 | |||
|ontology_enrichment_development_v019=CL:0000051;1.75e-08;53!UBERON:0006601;2.40e-07;82!CL:0000790;2.82e-07;18 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!6.81e-28!115;UBERON:0001049!4.30e-24!57;UBERON:0005068!4.30e-24!57;UBERON:0006241!4.30e-24!57;UBERON:0007135!4.30e-24!57;UBERON:0001017!4.25e-20!82;UBERON:0005743!4.59e-20!86;UBERON:0002616!1.75e-19!59;UBERON:0000955!1.80e-19!69;UBERON:0006238!1.80e-19!69;UBERON:0003080!2.25e-19!42;UBERON:0002780!2.67e-19!41;UBERON:0001890!2.67e-19!41;UBERON:0006240!2.67e-19!41;UBERON:0000073!8.88e-19!94;UBERON:0001016!8.88e-19!94;UBERON:0003075!1.68e-15!86;UBERON:0007284!1.68e-15!86;UBERON:0001893!2.84e-15!34;UBERON:0002346!3.19e-15!90;UBERON:0002020!3.24e-15!34;UBERON:0003528!3.24e-15!34;UBERON:0002791!7.70e-15!33;UBERON:0001869!5.06e-14!32;UBERON:0003056!4.22e-12!61;UBERON:0002619!1.57e-11!22;UBERON:0000956!3.97e-11!25;UBERON:0000203!3.97e-11!25;UBERON:0000153!1.09e-10!129;UBERON:0007811!1.09e-10!129;UBERON:0001950!1.83e-10!20;UBERON:0000033!3.05e-09!123;UBERON:0000924!6.53e-07!173;UBERON:0006601!6.53e-07!173;UBERON:0004121!7.06e-07!169 | |ontology_enrichment_uberon=UBERON:0007023!6.81e-28!115;UBERON:0001049!4.30e-24!57;UBERON:0005068!4.30e-24!57;UBERON:0006241!4.30e-24!57;UBERON:0007135!4.30e-24!57;UBERON:0001017!4.25e-20!82;UBERON:0005743!4.59e-20!86;UBERON:0002616!1.75e-19!59;UBERON:0000955!1.80e-19!69;UBERON:0006238!1.80e-19!69;UBERON:0003080!2.25e-19!42;UBERON:0002780!2.67e-19!41;UBERON:0001890!2.67e-19!41;UBERON:0006240!2.67e-19!41;UBERON:0000073!8.88e-19!94;UBERON:0001016!8.88e-19!94;UBERON:0003075!1.68e-15!86;UBERON:0007284!1.68e-15!86;UBERON:0001893!2.84e-15!34;UBERON:0002346!3.19e-15!90;UBERON:0002020!3.24e-15!34;UBERON:0003528!3.24e-15!34;UBERON:0002791!7.70e-15!33;UBERON:0001869!5.06e-14!32;UBERON:0003056!4.22e-12!61;UBERON:0002619!1.57e-11!22;UBERON:0000956!3.97e-11!25;UBERON:0000203!3.97e-11!25;UBERON:0000153!1.09e-10!129;UBERON:0007811!1.09e-10!129;UBERON:0001950!1.83e-10!20;UBERON:0000033!3.05e-09!123;UBERON:0000924!6.53e-07!173;UBERON:0006601!6.53e-07!173;UBERON:0004121!7.06e-07!169 | ||
|ontology_enrichment_uberon_v019=UBERON:0002780;1.30e-14;41!UBERON:0001890;1.30e-14;41!UBERON:0000073;1.20e-13;53!UBERON:0002616;1.20e-13;53!UBERON:0001893;1.75e-13;34!UBERON:0003528;2.07e-13;34!UBERON:0002020;2.07e-13;34!UBERON:0002791;3.57e-13;32!UBERON:0001869;3.89e-13;32!UBERON:0002619;9.46e-12;22!UBERON:0000956;2.05e-11;25!UBERON:0000203;2.05e-11;25!UBERON:0001950;1.23e-10;20!UBERON:0001017;2.01e-09;75!UBERON:0000955;2.71e-09;68!UBERON:0001016;4.76e-09;83!UBERON:0007023;2.57e-08;114 | |||
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| ||
|short_description=p1@ENST00000416301,p1@ENST00000444375,p1@ENST00000452728,p1@ENST00000454638,p1@ENST00000458228 | |short_description=p1@ENST00000416301,p1@ENST00000444375,p1@ENST00000452728,p1@ENST00000454638,p1@ENST00000458228 | ||
}} | }} |
Latest revision as of 17:05, 23 July 2015
Short description: | p1@ENST00000416301, p1@ENST00000444375, p1@ENST00000452728, p1@ENST00000454638, p1@ENST00000458228 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_ENST00000416301_5end, CAGE_peak_1_at_ENST00000444375_5end, CAGE_peak_1_at_ENST00000452728_5end, CAGE_peak_1_at_ENST00000454638_5end, CAGE_peak_1_at_ENST00000458228_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000416301, ENST00000444375, ENST00000452728, ENST00000454638, ENST00000458228_5end |
EntrezGene: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic stem cell | 1.02e-20 | 168 |
hematopoietic cell | 1.36e-20 | 177 |
leukocyte | 3.90e-19 | 136 |
hematopoietic oligopotent progenitor cell | 2.02e-18 | 161 |
hematopoietic multipotent progenitor cell | 2.02e-18 | 161 |
nongranular leukocyte | 6.10e-18 | 115 |
hematopoietic lineage restricted progenitor cell | 1.05e-16 | 120 |
lymphoid lineage restricted progenitor cell | 3.65e-14 | 52 |
lymphocyte | 1.01e-13 | 53 |
common lymphoid progenitor | 1.01e-13 | 53 |
lymphocyte of B lineage | 7.58e-10 | 24 |
pro-B cell | 7.58e-10 | 24 |
classical monocyte | 1.19e-07 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.19e-07 | 42 |
mature alpha-beta T cell | 3.83e-07 | 18 |
alpha-beta T cell | 3.83e-07 | 18 |
immature T cell | 3.83e-07 | 18 |
mature T cell | 3.83e-07 | 18 |
immature alpha-beta T cell | 3.83e-07 | 18 |
myeloid cell | 4.57e-07 | 108 |
common myeloid progenitor | 4.57e-07 | 108 |
Ontology term | p-value | n |
---|---|---|
adult organism | 1.47e-27 | 114 |
neural tube | 2.91e-24 | 56 |
neural rod | 2.91e-24 | 56 |
future spinal cord | 2.91e-24 | 56 |
neural keel | 2.91e-24 | 56 |
regional part of nervous system | 1.19e-22 | 53 |
regional part of brain | 1.19e-22 | 53 |
central nervous system | 1.45e-20 | 81 |
brain | 1.54e-19 | 68 |
future brain | 1.54e-19 | 68 |
regional part of forebrain | 1.65e-19 | 41 |
forebrain | 1.65e-19 | 41 |
anterior neural tube | 1.65e-19 | 41 |
future forebrain | 1.65e-19 | 41 |
nervous system | 3.42e-19 | 89 |
neural plate | 1.06e-16 | 82 |
presumptive neural plate | 1.06e-16 | 82 |
neurectoderm | 2.68e-16 | 86 |
telencephalon | 1.96e-15 | 34 |
brain grey matter | 2.24e-15 | 34 |
gray matter | 2.24e-15 | 34 |
regional part of telencephalon | 2.32e-14 | 32 |
cerebral hemisphere | 3.61e-14 | 32 |
pre-chordal neural plate | 9.61e-13 | 61 |
regional part of cerebral cortex | 1.20e-11 | 22 |
cerebral cortex | 3.06e-11 | 25 |
pallium | 3.06e-11 | 25 |
neocortex | 1.44e-10 | 20 |
ecto-epithelium | 2.21e-09 | 104 |
ectoderm-derived structure | 2.34e-07 | 171 |
ectoderm | 2.34e-07 | 171 |
presumptive ectoderm | 2.34e-07 | 171 |
organ system subdivision | 4.41e-07 | 223 |
hematopoietic system | 8.14e-07 | 98 |
blood island | 8.14e-07 | 98 |