FFCP PHASE1:Hg19::chr9:4006301..4006305,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr9:4006301..4006305,- | |||
|description=CAGE_peak_at_chr9:4006301..4006305,- | |description=CAGE_peak_at_chr9:4006301..4006305,- | ||
|id=chr9:4006301..4006305,- | |id=chr9:4006301..4006305,- | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019=CL:0002605;3.84e-18;3!CL:0000128;1.76e-13;7!CL:0000126;1.76e-13;7!CL:0000127;1.76e-13;7!CL:0000243;2.56e-08;15!CL:0000125;2.56e-08;15!CL:0002174;1.80e-07;1!CL:0000501;1.80e-07;1!CL:0000095;2.05e-07;17!CL:0000313;4.97e-07;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0002605,5.04e-18,3;CL:0000128,2.08e-13,7;CL:0000126,2.08e-13,7;CL:0000127,2.08e-13,7;CL:0002453,2.08e-13,7;CL:0000243,3.04e-08,15;CL:0000125,3.04e-08,15;CL:0000030,3.04e-08,15;CL:0000339,3.04e-08,15;CL:0002174,1.98e-07,1;CL:0000501,1.98e-07,1;CL:0000313,2.37e-07,1;CL:0000095,2.38e-07,17;CL:0000123,2.38e-07,17 | |||
|ontology_enrichment_development_v019=CL:0000339;2.56e-08;15!UBERON:0005754;1.45e-07;1 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:4468;2.14e-12;2!DOID:3371;4.97e-07;1!DOID:4549;4.97e-07;1!DOID:5861;4.97e-07;1!DOID:2152;4.97e-07;1!DOID:6496;4.97e-07;1 | |||
|ontology_enrichment_disease_v019_2=DOID:4468,2.88e-12,2;DOID:2152,2.37e-07,1;DOID:3371,2.52e-07,1;DOID:4549,2.52e-07,1;DOID:5861,2.52e-07,1;DOID:6496,2.52e-07,1 | |||
|ontology_enrichment_uberon=UBERON:0001017!1.26e-14!82;UBERON:0000955!5.61e-14!69;UBERON:0006238!5.61e-14!69;UBERON:0005743!7.28e-14!86;UBERON:0001049!7.53e-14!57;UBERON:0005068!7.53e-14!57;UBERON:0006241!7.53e-14!57;UBERON:0007135!7.53e-14!57;UBERON:0002616!2.13e-13!59;UBERON:0000073!1.15e-11!94;UBERON:0001016!1.15e-11!94;UBERON:0002780!3.48e-10!41;UBERON:0001890!3.48e-10!41;UBERON:0006240!3.48e-10!41;UBERON:0003075!4.59e-10!86;UBERON:0007284!4.59e-10!86;UBERON:0003080!1.03e-09!42;UBERON:0000062!4.09e-09!511;UBERON:0002346!5.90e-09!90;UBERON:0007023!9.75e-09!115;UBERON:0002020!1.61e-08!34;UBERON:0003528!1.61e-08!34;UBERON:0001893!2.96e-08!34;UBERON:0002791!4.44e-08!33;UBERON:0003056!1.36e-07!61;UBERON:0000033!1.85e-07!123;UBERON:0000956!2.76e-07!25;UBERON:0000203!2.76e-07!25;UBERON:0001869!3.73e-07!32;UBERON:0000153!7.45e-07!129;UBERON:0007811!7.45e-07!129 | |ontology_enrichment_uberon=UBERON:0001017!1.26e-14!82;UBERON:0000955!5.61e-14!69;UBERON:0006238!5.61e-14!69;UBERON:0005743!7.28e-14!86;UBERON:0001049!7.53e-14!57;UBERON:0005068!7.53e-14!57;UBERON:0006241!7.53e-14!57;UBERON:0007135!7.53e-14!57;UBERON:0002616!2.13e-13!59;UBERON:0000073!1.15e-11!94;UBERON:0001016!1.15e-11!94;UBERON:0002780!3.48e-10!41;UBERON:0001890!3.48e-10!41;UBERON:0006240!3.48e-10!41;UBERON:0003075!4.59e-10!86;UBERON:0007284!4.59e-10!86;UBERON:0003080!1.03e-09!42;UBERON:0000062!4.09e-09!511;UBERON:0002346!5.90e-09!90;UBERON:0007023!9.75e-09!115;UBERON:0002020!1.61e-08!34;UBERON:0003528!1.61e-08!34;UBERON:0001893!2.96e-08!34;UBERON:0002791!4.44e-08!33;UBERON:0003056!1.36e-07!61;UBERON:0000033!1.85e-07!123;UBERON:0000956!2.76e-07!25;UBERON:0000203!2.76e-07!25;UBERON:0001869!3.73e-07!32;UBERON:0000153!7.45e-07!129;UBERON:0007811!7.45e-07!129 | ||
|ontology_enrichment_uberon_v019=UBERON:0001897;2.14e-12;2!UBERON:0010225;2.14e-12;2!UBERON:0006947;3.46e-09;3!UBERON:0004054;3.46e-09;3!UBERON:0000998;1.45e-07;1!UBERON:0006868;1.45e-07;1!UBERON:0001000;1.80e-07;1!UBERON:0005352;1.80e-07;1!UBERON:0000956;1.89e-07;25!UBERON:0000203;1.89e-07;25!UBERON:0005904;4.36e-07;4!UBERON:0004911;4.97e-07;1!UBERON:0003528;7.68e-07;34!UBERON:0002020;7.68e-07;34 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001897,6.70e-13,2;UBERON:0010225,6.70e-13,2;UBERON:0001049,3.71e-10,56;UBERON:0005068,3.71e-10,56;UBERON:0006241,3.71e-10,56;UBERON:0007135,3.71e-10,56;UBERON:0000955,2.08e-09,68;UBERON:0006238,2.08e-09,68;UBERON:0006947,3.27e-09,3;UBERON:0004054,3.27e-09,3;UBERON:0001017,4.60e-09,81;UBERON:0000073,7.56e-09,53;UBERON:0002616,7.56e-09,53;UBERON:0001016,6.22e-08,89;UBERON:0002780,1.20e-07,41;UBERON:0001890,1.20e-07,41;UBERON:0003080,1.20e-07,41;UBERON:0006240,1.20e-07,41;UBERON:0003075,1.23e-07,82;UBERON:0007284,1.23e-07,82;UBERON:0000998,1.46e-07,1;UBERON:0006868,1.46e-07,1;UBERON:0001000,1.65e-07,1;UBERON:0005352,1.65e-07,1;UBERON:0000956,1.97e-07,25;UBERON:0000203,1.97e-07,25;UBERON:0004911,2.37e-07,1;UBERON:0002346,3.49e-07,86;UBERON:0003528,3.70e-07,34;UBERON:0002020,3.70e-07,34;UBERON:0005904,4.19e-07,4;UBERON:0002784,7.31e-07,4 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0.245733936501509,0,0.436882744260345,0.263766978228454,0,0,0,0.602694528023977,0,0,0.246242116153576,0,0.313454721478088,2.86235987131057,1.09499540058307,1.25542639594803,0,0,0,0,0,0,0,0,0,0,0,0,0.553995408531877,0,0,0,0,0,0.145398238779565,0.377875943688809,0,0.232429036905685,0.822335776043652,0.929119112685311,0,0.768482119587302,0.709446689665756,0,0,0,0,0.272906150057846,0,0,0.641858054152187,0.639337125799041,0,0.997318288108159,0.426224750532694,0.290209238628584,0,0.622822248995575,0.251248665256743,1.0429658368404,0.217188844705117,0,0,0.316462387440884,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196709770113833,0,0.205601498999509,0.167186495390678,0.32592226663359,0.473447805734733,0,0,0,0,0,0.128091319725675,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.236777252044017,0,0,0,0.289648807765598,0,0,0,0,0,0,1.5905718941022,0,0.661743720148475,0.665188192387692,0.43917392846563,0.392937226493138,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0892997282840798,0,0,1.53316637465883,0,0,0,0,0,0,0,0.132409180813219,0.573673241497627,0.354668382198357,0.560677600142307,0,0,0.622422070799533,0.269421344139376,0.326923806226917,0.302714855289863,0.576175924479999,0,0,0,0.298897361103602,0,0,0.280901613404497,0.61246251376468,0.368502951935304,0,0,0,0,0,0.168336113954066,0,0.277064115484183,0,0,0,0,0,0.213557388818567,0,0.300091096084402,0,0,0.18611685633159,0.168776332241266,0,0,0.184099797284599,0.323292113637624,0,0.302256294682921,0.339121184620975,0,0,0,0,0,0,0.10366105501537,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.982827216677626,0,0,0,0,0,0,0,0,0,0,0,0.231860809950154,0,0,0,0.190254152234598,0,0,0,0,0,0,0.16798212819886,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.87192013766656,0,0.258543431515556,0,0,0,0,0.257207374262142,0,0,0,0,0,0.325736184293735,0,0,0.602878754119172,0,0.099972991182057,0,0,0,0,0,0,0.144781306667579,0.61642896765115,0.179060963239896,0,0,0,0,0.254094624222463,0,0.773288812777695,0,0.637938751653163,0,0,0,0,0,0,0,0.178428988797162,0.315404830067869,0.234282829985426,0,0,0,0,0,0.173767228936166,0,0.343143423810856,0,0,0.106727557803444,0,0,0,0,0.153461973288062,0.280660094433074,0.256278298511402,0,0,0,0,0.177561725313127,0.164254312027618,0,0,0,0.200506470303285,0,0,0,0,0,0.0770153371044148,0,0,0,0,0,0,0,0,0,0.509752546090077,0,0,0,0,0,0.328014645699706,0,0.206082023295445,0,0.330037999682352,0,0,0,0,0.308097234229289,0.307007349452259,0.137836572484531,1.07420244868274,0.145016693914229,0.255679882248303,0.0890320356467374,0,0,0,0,0,0.94443704049192,0,0,0,0,0,0.429374660225974,0.372158369359667,0,0.190630193923825,0,0,0,0,0.539617372749944,0.274537029736055,0.117812402345686,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.6196469961995,0,0,0,0,0.354761064070598,0,0.987884678879706,0,0,0,0,0,0.188287601553558,0,0,0,0,0,0.764637207142375,0,0,0,0,0,0,1.49553699578462,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.568272293612826,0,0,0,0.994147647766298,0.422008249231538,0.556543525114529,0.988823245360557,0,1.39473591775749,0.276283915531148,0.755798243562828,1.22722419002586,0,0.311039587661807,0.359473404589307,0.537063524026827,0,0.394573622547734,0,0,0,0.0927680981618513,0,0,0,0,0,0.508507300585533,0,0,0,0,0,0.120596438625408,0,0.110579259931225,0,0,0,0,0.153900517007594,0.227884111694002,0,0,0.325942115766024,0.957003479195758,0,0,0,0,0,0,0,0,0,0,1.26598838716816,1.14262965711403,0,0,0,0,0,0.296521128680622,0,0,0.606610196826093,0,0,0,0,0,2.36750641709634,1.20990716048664,0.91821828489147,0.126373159256976,0,0.103688191397247,0,0.330991955875499,0.313932918407225,0,0.853828638089378,0,0.173559738335131,0,0.174118413160805,0.52418000472609,0,0,0.0730893170861856,0,0,1.76512253383001,0,0.822251547880505,0.397429223405979,0.316553979779393,0,0.240476460754601,0.640358984218058,0,0.144090417154106,0,0,0,0.248505071130865,0.235694034616795,0.271808412147228,1.15063130943567,0.611989305817931,0,0,0.547621515567972,0,2.14882720709979,0,0.279282401272254,0,0.717873024576814,0,0,0,0,0.360299883542404,0,0,0,0,0.885847333632739,0.0846733320657845,0,1.36203406111576,0,0,0,0,0,0.121499113316049,0,0.157611414598396,0.629455057619977,0,0,0.191915197319445,0,0,1.5256112259285,0,0,0.326587360109409,1.19730191562487,0,0,0,0,0,0.258565912723101,1.19009341568421,1.88195521672762,0,0.106787412567695,0.471612915298998,0.414239055347196,0.496166021811951,0,0,0,0.544017803369474,0,0,0,0,0,0.122026264901963,0.500763722825999,1.14681839138014,0.665574309221114,0.683060432355218,0,0.499921631848426,0,0,0.235265819698172,0,0,0.298509605773748,0,0,0,0.251567901752575,0.889811221596536,0,0.604923695052956,0,0.443565449968902,0,2.24901556081802,0.155262956876259,0,0,1.04349012362347,0.450772826991655,0.380805212168795,0,0,0.322231671127465,0.928067519756987,0.398095888698616,0,0,0,0,0,0,0,0,0.231522474323834,0.244736704506468,0.179088841081487,0.617602894321944,0.219284049578707,0.353378291891762,0.771656153083659,0,0,0,0.607719912354764,0.553033744606923,0,0,0,0.327609848846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| ||
|short_description=p@chr9:4006301..4006305,- | |short_description=p@chr9:4006301..4006305,- | ||
}} | }} |
Latest revision as of 02:05, 1 August 2015
Short description: | p@chr9:4006301..4006305, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr9:4006301..4006305, - |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
astrocyte of the cerebral cortex | 5.04e-18 | 3 |
oligodendrocyte | 2.08e-13 | 7 |
macroglial cell | 2.08e-13 | 7 |
astrocyte | 2.08e-13 | 7 |
oligodendrocyte precursor cell | 2.08e-13 | 7 |
glial cell (sensu Vertebrata) | 3.04e-08 | 15 |
glial cell | 3.04e-08 | 15 |
glioblast | 3.04e-08 | 15 |
glioblast (sensu Vertebrata) | 3.04e-08 | 15 |
follicular cell of ovary | 1.98e-07 | 1 |
granulosa cell | 1.98e-07 | 1 |
serous secreting cell | 2.37e-07 | 1 |
neuron associated cell | 2.38e-07 | 17 |
neuron associated cell (sensu Vertebrata) | 2.38e-07 | 17 |
Ontology term | p-value | n |
---|---|---|
dorsal plus ventral thalamus | 6.70e-13 | 2 |
thalamic complex | 6.70e-13 | 2 |
neural tube | 3.71e-10 | 56 |
neural rod | 3.71e-10 | 56 |
future spinal cord | 3.71e-10 | 56 |
neural keel | 3.71e-10 | 56 |
brain | 2.08e-09 | 68 |
future brain | 2.08e-09 | 68 |
male genital duct | 3.27e-09 | 3 |
internal male genitalia | 3.27e-09 | 3 |
central nervous system | 4.60e-09 | 81 |
regional part of nervous system | 7.56e-09 | 53 |
regional part of brain | 7.56e-09 | 53 |
nervous system | 6.22e-08 | 89 |
regional part of forebrain | 1.20e-07 | 41 |
forebrain | 1.20e-07 | 41 |
anterior neural tube | 1.20e-07 | 41 |
future forebrain | 1.20e-07 | 41 |
neural plate | 1.23e-07 | 82 |
presumptive neural plate | 1.23e-07 | 82 |
seminal vesicle | 1.46e-07 | 1 |
seminal fluid secreting gland | 1.46e-07 | 1 |
vas deferens | 1.65e-07 | 1 |
spermatic cord | 1.65e-07 | 1 |
cerebral cortex | 1.97e-07 | 25 |
pallium | 1.97e-07 | 25 |
epithelium of female gonad | 2.37e-07 | 1 |
neurectoderm | 3.49e-07 | 86 |
brain grey matter | 3.70e-07 | 34 |
gray matter | 3.70e-07 | 34 |
duct of male reproductive system | 4.19e-07 | 4 |
regional part of diencephalon | 7.31e-07 | 4 |
Ontology term | p-value | n |
---|---|---|
clear cell adenocarcinoma | 2.88e-12 | 2 |
ovary epithelial cancer | 2.37e-07 | 1 |
chondrosarcoma | 2.52e-07 | 1 |
extraosseous chondrosarcoma | 2.52e-07 | 1 |
myxoid chondrosarcoma | 2.52e-07 | 1 |
extraskeletal myxoid chondrosarcoma | 2.52e-07 | 1 |