FF:10441-106E9: Difference between revisions
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{{f5samples | {{f5samples | ||
| | |DRA_sample_Accession=CAGE@SAMD00005318 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |HumanCAGEScanFiles=NCig10066;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.cell_line.CAGEScan/synovial%2520sarcoma%2520cell%2520line%253aHS-SY-II%252c%2520tech_rep1.NCig10066.10441-106E9.hg19.GCTATA.3prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.cell_line.CAGEScan/synovial%2520sarcoma%2520cell%2520line%253aHS-SY-II%252c%2520tech_rep1.NCig10066.10441-106E9.hg19.GCTATA.5prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.cell_line.CAGEScan/synovial%2520sarcoma%2520cell%2520line%253aHS-SY-II%252c%2520tech_rep1.NCig10066.10441-106E9.hg19.GCTATA.bam;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.cell_line.CAGEScan/synovial%2520sarcoma%2520cell%2520line%253aHS-SY-II%252c%2520tech_rep1.NCig10066.10441-106E9.hg19.GCTATA.pairs.bed.gz!NCig10130;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.cell_line.CAGEScan/synovial%2520sarcoma%2520cell%2520line%253aHS-SY-II%252c%2520tech_rep2.NCig10130.10441-106E9.hg19.GCTATA.3prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.cell_line.CAGEScan/synovial%2520sarcoma%2520cell%2520line%253aHS-SY-II%252c%2520tech_rep2.NCig10130.10441-106E9.hg19.GCTATA.5prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.cell_line.CAGEScan/synovial%2520sarcoma%2520cell%2520line%253aHS-SY-II%252c%2520tech_rep2.NCig10130.10441-106E9.hg19.GCTATA.bam;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.cell_line.CAGEScan/synovial%2520sarcoma%2520cell%2520line%253aHS-SY-II%252c%2520tech_rep2.NCig10130.10441-106E9.hg19.GCTATA.pairs.bed.gz | ||
| | |accession_numbers=CAGE;DRX008018;DRR008890;DRZ000315;DRZ001700;DRZ011665;DRZ013050 | ||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000483,UBERON:0002384,UBERON:0000479,UBERON:0000064,UBERON:0000062,UBERON:0004120,UBERON:0004457,UBERON:0000061,UBERON:0000465,UBERON:0004923,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0006914,UBERON:0004905,UBERON:0000486,UBERON:0006915,UBERON:0007616,UBERON:0000042,UBERON:0000982,UBERON:0004458,UBERON:0010317,UBERON:0002217,UBERON:0002018,UBERON:0002204,UBERON:0001434,UBERON:0004770 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000151,CL:0002320,CL:0000066,CL:0002371,CL:0000213,CL:0002078,CL:0000499,CL:0000153,CL:0000327,CL:0000447,CL:0000215,CL:0000255,CL:0000214 | |||
|ancestors_in_disease_facet=DOID:4,DOID:162,DOID:14566,DOID:0050687,DOID:1115 | |||
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0100400 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr12:54379029..54379057,+!p2@HOXC10!2.36!228.77!HOXC10;;chr14:29234581..29234601,+!p2@FOXG1!2.18!151.15!FOXG1;;chr7:19157248..19157268,-!p1@TWIST1!2.12!348.20!TWIST1;;chr2:223163706..223163730,-!p1@PAX3!2.00!99.87!PAX3;;chr16:86544113..86544145,+!p1@FOXF1!1.99!119.43!FOXF1;;chr12:54393880..54393962,+!p1@HOXC9!1.95!87.41!HOXC9;;chr5:2751762..2751784,-!p1@IRX2!1.89!76.68!IRX2;;chr12:54348655..54348693,+!p1@HOXC12!1.86!71.15!HOXC12;;chr15:57511609..57511651,+!p2@TCF12!1.85!113.91!TCF12;;chrX:85403445..85403479,+!p2@DACH2!1.84!68.63!DACH2;;chr13:72441074..72441172,-!p2@DACH1!1.83!67.37!DACH1;;chr13:72441315..72441454,-!p1@DACH1!1.74!104.13!DACH1;;chr3:147127177..147127194,+!p2@ZIC1!1.74!53.64!ZIC1;;chr12:54348702..54348715,+!p2@HOXC12!1.69!47.49!HOXC12;;chr3:147127142..147127168,+!p1@ZIC1!1.68!47.33!ZIC1;;chr7:155250249..155250278,+!p@chr7:155250249..155250278,+!1.67!45.91!EN2;;chr5:174151612..174151633,+!p2@MSX2!1.64!42.28!MSX2;;chr6:1312325..1312340,+!p1@FOXQ1!1.62!65.00!FOXQ1;;chr5:174151553..174151610,+!p1@MSX2!1.61!65.16!MSX2;;chr17:46682321..46682362,-!p1@HOXB6!1.59!38.34!HOXB6;;chr13:100634031..100634045,+!p1@ZIC2!1.59!38.18!ZIC2;;chr14:29235961..29236008,+!p1@FOXG1!1.57!36.29!FOXG1;;chr10:131762504..131762555,-!p1@EBF3!1.56!35.50!EBF3;;chr12:54384370..54384382,+!p5@HOXC6!1.52!31.87!HOXC6;;chr8:106330656..106330684,+!p1@ZFPM2!1.51!80.94!ZFPM2;;chr2:172967621..172967637,-!p1@DLX2!1.48!76.36!DLX2;;chr6:1389789..1389821,+!p1@FOXF2!1.47!38.81!FOXF2;;chr9:126774018..126774055,+!p1@LHX2!1.47!28.24!LHX2;;chr2:237077022..237077038,-!p1@GBX2!1.46!28.08!GBX2;;chr15:42749722..42749739,-!p2@ZFP106!1.44!47.17!ZFP106;;chr5:2751785..2751808,-!p2@IRX2!1.43!25.72!IRX2;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.42!25.40!HOXC5;;chr15:68115672..68115691,+!p1@SKOR1!1.42!25.09!SKOR1;;chrX:84498989..84499003,+!p1@ZNF711!1.38!31.40!ZNF711;;chr4:4861385..4861398,+!p1@MSX1!1.37!65.00!MSX1;;chr2:172949484..172949522,+!p1@DLX1!1.36!22.09!DLX1;;chr6:10412600..10412637,-!p1@TFAP2A!1.35!35.34!TFAP2A;;chr2:176964515..176964540,+!p1@HOXD12!1.35!21.61!HOXD12;;chr14:61116183..61116208,-!p1@SIX1!1.34!77.47!SIX1;;chr2:60780753..60780800,-!p1@BCL11A!1.33!97.98!BCL11A;;chr6:10415276..10415341,-!p2@TFAP2A!1.33!25.09!TFAP2A;;chr6:19837592..19837621,+!p1@ID4!1.32!118.80!ID4;;chr19:47523058..47523114,+!p1@NPAS1!1.32!19.72!NPAS1;;chr7:156803329..156803362,-!p1@MNX1!1.30!18.93!MNX1;;chr9:96717629..96717644,-!p1@BARX1!1.29!18.62!BARX1;;chr2:175199697..175199706,+!p2@SP9!1.28!17.99!SP9;;chr18:72922743..72922761,+!p3@TSHZ1!1.27!56.48!TSHZ1;;chr17:46667594..46667619,-!p1@HOXB3!1.27!17.51!HOXB3;;chr17:41622765..41622821,-!p2@ETV4!1.26!25.87!ETV4;;chr12:66218598..66218645,+!p2@HMGA2!1.25!76.05!HMGA2;;chr8:106330696..106330719,+!p2@ZFPM2!1.25!21.46!ZFPM2;;chr12:54366894..54366922,+!p2@HOXC11!1.25!16.88!HOXC11;;chr8:77593474..77593612,+!p1@ZFHX4!1.24!67.84!ZFHX4;;chr9:1050331..1050363,+!p1@DMRT2!1.24!16.57!DMRT2;;chr13:100623375..100623425,-!p1@ZIC5!1.24!16.41!ZIC5;;chr13:100634130..100634143,+!p3@ZIC2!1.24!16.41!ZIC2;;chr12:66218183..66218209,+!p4@HMGA2!1.23!30.77!HMGA2;;chr2:185463247..185463263,+!p1@ZNF804A!1.23!28.40!ZNF804A;;chr1:221052994..221053008,+!p6@HLX!1.23!18.77!HLX;;chr6:10412392..10412409,-!p4@TFAP2A!1.23!18.14!TFAP2A;;chr3:147123837..147123848,-!p7@ZIC4!1.23!16.09!ZIC4;;chr9:132427883..132427951,+!p2@PRRX2!1.23!16.09!PRRX2;;chr11:129245526..129245553,+!p1@BARX2!1.21!15.30!BARX2;;chr12:66218255..66218304,+!p3@HMGA2!1.20!39.60!HMGA2;;chr15:57511589..57511608,+!p4@TCF12!1.20!14.83!TCF12;;chr3:147127489..147127503,+!p11@ZIC1!1.20!14.67!ZIC1;;chr8:144512897..144512903,-!p1@MAFA!1.20!14.67!MAFA;;chr12:54366975..54367001,+!p1@HOXC11!1.19!14.36!HOXC11;;chr9:126773880..126773895,+!p2@LHX2!1.19!14.36!LHX2;;chr12:54332652..54332671,+!p2@HOXC13!1.18!14.20!HOXC13;;chr14:29236269..29236285,+!p3@FOXG1!1.18!14.20!FOXG1;;chr12:66218378..66218401,+!p6@HMGA2!1.17!21.30!HMGA2;;chr12:54378923..54378966,+!p1@HOXC10!1.17!13.88!HOXC10;;chr5:153857778..153857794,-!p1@HAND1!1.17!13.88!HAND1;;chr4:8873545..8873583,-!p1@HMX1!1.17!13.73!HMX1;;chr2:60780607..60780624,-!p2@BCL11A!1.16!40.86!BCL11A;;chr2:172967242..172967265,-!p2@DLX2!1.15!13.10!DLX2;;chr8:60031682..60031710,-!p2@TOX!1.14!20.83!TOX;;chr12:66218212..66218244,+!p5@HMGA2!1.14!18.46!HMGA2;;chr12:54366949..54366973,+!p3@HOXC11!1.14!12.94!HOXC11;;chr7:27192185..27192209,-!p1@HOXA3!1.14!12.78!HOXA3;;chr20:61051039..61051057,-!p1@GATA5!1.13!12.62!GATA5;;chr12:66218836..66218888,+!p1@HMGA2!1.12!114.70!HMGA2;;chr12:54332608..54332636,+!p1@HOXC13!1.12!12.31!HOXC13;;chr12:54379066..54379073,+!p11@HOXC10!1.12!12.15!HOXC10;;chr13:100634004..100634025,+!p2@ZIC2!1.12!12.15!ZIC2;;chr16:1031762..1031781,+!p1@SOX8!1.12!12.15!SOX8;;chrX:84499081..84499115,+!p2@ZNF711!1.11!17.67!ZNF711;;chr13:100638100..100638115,+!p4@ZIC2!1.11!11.99!ZIC2;;chr1:214161272..214161322,+!p1@PROX1!1.10!16.57!PROX1;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!1.10!12.31!GLIS1;;chr4:109089901..10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| |expression_enrichment_score=chr12:54379029..54379057,+!p2@HOXC10!2.36!228.77!HOXC10;;chr14:29234581..29234601,+!p2@FOXG1!2.18!151.15!FOXG1;;chr7:19157248..19157268,-!p1@TWIST1!2.12!348.20!TWIST1;;chr2:223163706..223163730,-!p1@PAX3!2.00!99.87!PAX3;;chr16:86544113..86544145,+!p1@FOXF1!1.99!119.43!FOXF1;;chr12:54393880..54393962,+!p1@HOXC9!1.95!87.41!HOXC9;;chr5:2751762..2751784,-!p1@IRX2!1.89!76.68!IRX2;;chr12:54348655..54348693,+!p1@HOXC12!1.86!71.15!HOXC12;;chr15:57511609..57511651,+!p2@TCF12!1.85!113.91!TCF12;;chrX:85403445..85403479,+!p2@DACH2!1.84!68.63!DACH2;;chr13:72441074..72441172,-!p2@DACH1!1.83!67.37!DACH1;;chr13:72441315..72441454,-!p1@DACH1!1.74!104.13!DACH1;;chr3:147127177..147127194,+!p2@ZIC1!1.74!53.64!ZIC1;;chr12:54348702..54348715,+!p2@HOXC12!1.69!47.49!HOXC12;;chr3:147127142..147127168,+!p1@ZIC1!1.68!47.33!ZIC1;;chr7:155250249..155250278,+!p@chr7:155250249..155250278,+!1.67!45.91!EN2;;chr5:174151612..174151633,+!p2@MSX2!1.64!42.28!MSX2;;chr6:1312325..1312340,+!p1@FOXQ1!1.62!65.00!FOXQ1;;chr5:174151553..174151610,+!p1@MSX2!1.61!65.16!MSX2;;chr17:46682321..46682362,-!p1@HOXB6!1.59!38.34!HOXB6;;chr13:100634031..100634045,+!p1@ZIC2!1.59!38.18!ZIC2;;chr14:29235961..29236008,+!p1@FOXG1!1.57!36.29!FOXG1;;chr10:131762504..131762555,-!p1@EBF3!1.56!35.50!EBF3;;chr12:54384370..54384382,+!p5@HOXC6!1.52!31.87!HOXC6;;chr8:106330656..106330684,+!p1@ZFPM2!1.51!80.94!ZFPM2;;chr2:172967621..172967637,-!p1@DLX2!1.48!76.36!DLX2;;chr6:1389789..1389821,+!p1@FOXF2!1.47!38.81!FOXF2;;chr9:126774018..126774055,+!p1@LHX2!1.47!28.24!LHX2;;chr2:237077022..237077038,-!p1@GBX2!1.46!28.08!GBX2;;chr15:42749722..42749739,-!p2@ZFP106!1.44!47.17!ZFP106;;chr5:2751785..2751808,-!p2@IRX2!1.43!25.72!IRX2;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.42!25.40!HOXC5;;chr15:68115672..68115691,+!p1@SKOR1!1.42!25.09!SKOR1;;chrX:84498989..84499003,+!p1@ZNF711!1.38!31.40!ZNF711;;chr4:4861385..4861398,+!p1@MSX1!1.37!65.00!MSX1;;chr2:172949484..172949522,+!p1@DLX1!1.36!22.09!DLX1;;chr6:10412600..10412637,-!p1@TFAP2A!1.35!35.34!TFAP2A;;chr2:176964515..176964540,+!p1@HOXD12!1.35!21.61!HOXD12;;chr14:61116183..61116208,-!p1@SIX1!1.34!77.47!SIX1;;chr2:60780753..60780800,-!p1@BCL11A!1.33!97.98!BCL11A;;chr6:10415276..10415341,-!p2@TFAP2A!1.33!25.09!TFAP2A;;chr6:19837592..19837621,+!p1@ID4!1.32!118.80!ID4;;chr19:47523058..47523114,+!p1@NPAS1!1.32!19.72!NPAS1;;chr7:156803329..156803362,-!p1@MNX1!1.30!18.93!MNX1;;chr9:96717629..96717644,-!p1@BARX1!1.29!18.62!BARX1;;chr2:175199697..175199706,+!p2@SP9!1.28!17.99!SP9;;chr18:72922743..72922761,+!p3@TSHZ1!1.27!56.48!TSHZ1;;chr17:46667594..46667619,-!p1@HOXB3!1.27!17.51!HOXB3;;chr17:41622765..41622821,-!p2@ETV4!1.26!25.87!ETV4;;chr12:66218598..66218645,+!p2@HMGA2!1.25!76.05!HMGA2;;chr8:106330696..106330719,+!p2@ZFPM2!1.25!21.46!ZFPM2;;chr12:54366894..54366922,+!p2@HOXC11!1.25!16.88!HOXC11;;chr8:77593474..77593612,+!p1@ZFHX4!1.24!67.84!ZFHX4;;chr9:1050331..1050363,+!p1@DMRT2!1.24!16.57!DMRT2;;chr13:100623375..100623425,-!p1@ZIC5!1.24!16.41!ZIC5;;chr13:100634130..100634143,+!p3@ZIC2!1.24!16.41!ZIC2;;chr12:66218183..66218209,+!p4@HMGA2!1.23!30.77!HMGA2;;chr2:185463247..185463263,+!p1@ZNF804A!1.23!28.40!ZNF804A;;chr1:221052994..221053008,+!p6@HLX!1.23!18.77!HLX;;chr6:10412392..10412409,-!p4@TFAP2A!1.23!18.14!TFAP2A;;chr3:147123837..147123848,-!p7@ZIC4!1.23!16.09!ZIC4;;chr9:132427883..132427951,+!p2@PRRX2!1.23!16.09!PRRX2;;chr11:129245526..129245553,+!p1@BARX2!1.21!15.30!BARX2;;chr12:66218255..66218304,+!p3@HMGA2!1.20!39.60!HMGA2;;chr15:57511589..57511608,+!p4@TCF12!1.20!14.83!TCF12;;chr3:147127489..147127503,+!p11@ZIC1!1.20!14.67!ZIC1;;chr8:144512897..144512903,-!p1@MAFA!1.20!14.67!MAFA;;chr12:54366975..54367001,+!p1@HOXC11!1.19!14.36!HOXC11;;chr9:126773880..126773895,+!p2@LHX2!1.19!14.36!LHX2;;chr12:54332652..54332671,+!p2@HOXC13!1.18!14.20!HOXC13;;chr14:29236269..29236285,+!p3@FOXG1!1.18!14.20!FOXG1;;chr12:66218378..66218401,+!p6@HMGA2!1.17!21.30!HMGA2;;chr12:54378923..54378966,+!p1@HOXC10!1.17!13.88!HOXC10;;chr5:153857778..153857794,-!p1@HAND1!1.17!13.88!HAND1;;chr4:8873545..8873583,-!p1@HMX1!1.17!13.73!HMX1;;chr2:60780607..60780624,-!p2@BCL11A!1.16!40.86!BCL11A;;chr2:172967242..172967265,-!p2@DLX2!1.15!13.10!DLX2;;chr8:60031682..60031710,-!p2@TOX!1.14!20.83!TOX;;chr12:66218212..66218244,+!p5@HMGA2!1.14!18.46!HMGA2;;chr12:54366949..54366973,+!p3@HOXC11!1.14!12.94!HOXC11;;chr7:27192185..27192209,-!p1@HOXA3!1.14!12.78!HOXA3;;chr20:61051039..61051057,-!p1@GATA5!1.13!12.62!GATA5;;chr12:66218836..66218888,+!p1@HMGA2!1.12!114.70!HMGA2;;chr12:54332608..54332636,+!p1@HOXC13!1.12!12.31!HOXC13;;chr12:54379066..54379073,+!p11@HOXC10!1.12!12.15!HOXC10;;chr13:100634004..100634025,+!p2@ZIC2!1.12!12.15!ZIC2;;chr16:1031762..1031781,+!p1@SOX8!1.12!12.15!SOX8;;chrX:84499081..84499115,+!p2@ZNF711!1.11!17.67!ZNF711;;chr13:100638100..100638115,+!p4@ZIC2!1.11!11.99!ZIC2;;chr1:214161272..214161322,+!p1@PROX1!1.10!16.57!PROX1;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!1.10!12.31!GLIS1;;chr4:109089901..109089930,-!p3@LEF1!1.10!11.68!LEF1;;chr2:5832508..5832524,+!p1@SOX11!1.10!11.52!SOX11;;chr1:221052840..221052875,+!p4@HLX!1.09!13.57!HLX;;chr3:147124307..147124336,-!p2@ZIC4!1.09!11.36!ZIC4;;chr4:111544219..111544240,-!p1@PITX2!1.09!11.36!PITX2;;chr18:72922811..72922827,+!p1@TSHZ1!1.08!55.54!TSHZ1;;chr8:77596014..77596033,+!p6@ZFHX4!1.08!10.89!ZFHX4;;chr2:19558373..19558392,-!p1@OSR1!1.07!29.35!OSR1;;chr16:86600426..86600441,+!p1@FOXC2!1.07!26.82!FOXC2;;chr3:169381420..169381535,-!p1@MECOM!1.07!12.62!MECOM;;chr9:20621927..20621996,-!p3@MLLT3!1.06!17.67!MLLT3;;chr5:3595977..3595999,+!p1@IRX1!1.06!10.57!IRX1;;chr3:128206762..128206781,-!p2@GATA2!1.05!64.84!GATA2;;chr10:70320074..70320106,+!p1@TET1!1.05!20.98!TET1;;chr16:52581025..52581072,-!p1@TOX3!1.05!10.10!TOX3;;chr18:19749541..19749557,+!p1@GATA6!1.04!31.40!GATA6;;chr16:54320675..54320715,-!p1@IRX3!1.04!21.93!IRX3;;chr3:181429704..181429722,+!p1@SOX2!1.04!9.94!SOX2;;chr4:111558135..111558198,-!p2@PITX2!1.04!9.94!PITX2;;chr8:49833978..49833996,-!p1@SNAI2!1.03!204.00!SNAI2;;chr5:3595934..3595957,+!p2@IRX1!1.03!9.78!IRX1;;chr8:25902876..25902936,-!p1@EBF2!1.03!9.62!EBF2;;chr15:68117844..68117858,+!p3@SKOR1!1.03!9.62!SKOR1;;chr9:129376233..129376251,+!p2@LMX1B!1.03!9.62!LMX1B;;chr2:237076992..237077008,-!p2@GBX2!1.03!9.62!GBX2;;chr7:149470641..149470694,-!p1@ZNF467!1.02!43.86!ZNF467;;chr7:28448965..28448994,+!p2@CREB5!1.02!33.92!CREB5;;chr7:150946015..150946070,-!p3@SMARCD3!1.02!20.67!SMARCD3;;chr22:19748231..19748317,+!p1@TBX1!1.02!9.47!TBX1;;chr12:54332687..54332701,+!p3@HOXC13!1.02!9.47!HOXC13;;chr10:70320041..70320065,+!p2@TET1!1.01!9.31!TET1;;chr2:172967276..172967296,-!p3@DLX2!1.01!9.15!DLX2;;chr19:1753498..1753519,+!p1@ONECUT3!1.01!9.15!ONECUT3;;chr1:6479968..6479986,-!p1@HES2!1.01!9.15!HES2;;chr12:66218152..66218174,+!p10@HMGA2!1.00!9.78!HMGA2;;chr2:85981107..85981120,+!p3@ATOH8!1.00!8.99!ATOH8;;chr14:89029904..89029917,+!p5@ZC3H14!1.00!8.99!ZC3H14;;chr7:42276822..42276895,-!p2@GLI3!0.99!26.66!GLI3;;chr9:132427972..132428056,+!p1@PRRX2!0.99!11.52!PRRX2;;chr17:46703687..46703740,-!p1@HOXB9!0.99!8.84!HOXB9;;chr22:22874610..22874616,-!p1@ZNF280A!0.99!8.84!ZNF280A;;chr10:101292684..101292706,+!p1@NKX2-3!0.99!8.68!NKX2-3;;chr16:67197654..67197716,+!p3@HSF4!0.99!8.68!HSF4;;chr17:46675558..46675577,-!p2@HOXB6!0.99!8.68!HOXB6;;chr19:33793430..33793447,-!p1@CEBPA!0.98!37.23!CEBPA;;chr11:125034640..125034655,+!p1@PKNOX2!0.98!8.52!PKNOX2;;chr8:49833948..49833973,-!p2@SNAI2!0.97!55.06!SNAI2;;chr7:42276787..42276815,-!p1@GLI3!0.97!22.88!GLI3;;chr16:54320617..54320643,-!p3@IRX3!0.97!10.73!IRX3;;chr16:51185172..51185197,-!p1@SALL1!0.97!8.36!SALL1;;chr17:46806067..46806097,-!p1@HOXB13!0.97!8.36!HOXB13;;chr5:92918919..92918942,+!p1@NR2F1!0.96!37.71!NR2F1;;chr17:41623692..41623715,-!p1@ETV4!0.96!36.13!ETV4;;chr2:171572525..171572547,+!p6@SP5!0.96!8.20!SP5;;chr2:175199675..175199688,+!p1@SP9!0.96!8.20!SP9;;chr14:33403881..33403924,+!p1@NPAS3!0.96!8.20!NPAS3;;chr15:96874012..96874042,+!p2@NR2F2!0.95!73.21!NR2F2;;chr6:1610293..1610310,+!p1@FOXC1!0.95!13.41!FOXC1;;chr1:18957605..18957623,+!p3@PAX7!0.95!7.89!PAX7;;chr16:54320646..54320672,-!p2@IRX3!0.94!11.99!IRX3;;chr18:53068911..53068935,-!p4@TCF4!0.94!8.68!TCF4;;chrY:21906594..21906622,-!p1@KDM5D!0.94!7.73!KDM5D;;chr10:126138597..126138612,-!p1@NKX1-2!0.94!7.73!NKX1-2;;chr1:170632477..170632506,+!p6@PRRX1!0.94!7.73!PRRX1;;chr12:66218443..66218461,+!p8@HMGA2!0.93!9.62!HMGA2;;chr11:129245736..129245758,+!p2@BARX2!0.93!7.57!BARX2;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!0.93!7.57!HOXC5;;chr17:41622731..41622764,-!p5@ETV4!0.93!7.57!ETV4;;chr2:172950227..172950249,+!p2@DLX1!0.93!7.57!DLX1;;chr15:68115921..68115938,+!p2@SKOR1!0.93!7.42!SKOR1;;chr8:60031619..60031676,-!p1@TOX!0.92!16.41!TOX;;chr2:166326200..166326216,+!p1@CSRNP3!0.92!11.04!CSRNP3;;chr16:54964740..54964789,+!p1@IRX5!0.92!10.73!IRX5;;chr16:54319010..54319041,-!p8@IRX3!0.92!7.26!IRX3;;chr2:172967323..172967336,-!p4@DLX2!0.92!7.26!DLX2;;chr6:1389824..1389840,+!p3@FOXF2!0.92!7.26!FOXF2;;chr6:1612300..1612324,+!p3@FOXC1!0.92!7.26!FOXC1;;chr4:53206..53260,+!p1@ZNF595,p1@ZNF718!0.91!70.52!ZNF595;;chr15:96874145..96874166,+!p7@NR2F2!0.91!14.04!NR2F2;;chr19:31840130..31840160,-!p2@TSHZ3!0.91!11.36!TSHZ3;;chr8:60031762..60031803,-!p3@TOX!0.91!10.57!TOX;;chr5:92919100..92919135,+!p3@NR2F1!0.91!8.68!NR2F1;;chr2:172967353..172967365,-!p5@DLX2!0.91!7.10!DLX2;;chr14:29237009..29237049,+!p4@FOXG1!0.91!7.10!FOXG1;;chr14:61125018..61125037,-!p9@SIX1!0.91!7.10!SIX1;;chr17:46703212..46703238,-!p2@HOXB9!0.91!7.10!HOXB9;;chr10:114710098..114710130,+!p2@TCF7L2!0.90!55.06!TCF7L2;;chr12:24715376..24715432,-!p1@SOX5!0.90!8.99!SOX5;;chr8:77593448..77593471,+!p2@ZFHX4!0.90!6.94!ZFHX4;;chr2:71127699..71127744,+!p1@VAX2!0.89!14.51!VAX2;;chr20:35202909..35202963,+!p2@TGIF2,p3@C20orf24!0.89!9.94!TGIF2;;chr8:60031809..60031835,-!p4@TOX!0.89!8.68!TOX;;chr9:126774058..126774081,+!p3@LHX2!0.89!6.78!LHX2;;chr1:151032860..151032918,+!p1@MLLT11!0.88!82.20!MLLT11;;chr2:200322654..20032270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| ||
|ffid_belonging_in_development=CL:0000134,CL:0000222 | |||
|fonse_cell_line=FF:0100400 | |fonse_cell_line=FF:0100400 | ||
|fonse_cell_line_closure=FF:0100400 | |fonse_cell_line_closure=FF:0100400 | ||
| Line 35: | Line 42: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/synovial%2520sarcoma%2520cell%2520line%253aHS-SY-II.CNhs11244.10441-106E9.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/synovial%2520sarcoma%2520cell%2520line%253aHS-SY-II.CNhs11244.10441-106E9.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/synovial%2520sarcoma%2520cell%2520line%253aHS-SY-II.CNhs11244.10441-106E9.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/synovial%2520sarcoma%2520cell%2520line%253aHS-SY-II.CNhs11244.10441-106E9.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/synovial%2520sarcoma%2520cell%2520line%253aHS-SY-II.CNhs11244.10441-106E9.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10441-106E9 | |id=FF:10441-106E9 | ||
|is_a=CL:0000214;;EFO:0002091;;FF: | |is_a=CL:0000214;;EFO:0002091;;FF:0000210;;FF:0100400 | ||
|is_obsolete= | |||
|library_id=CNhs11244 | |||
|library_id_phase_based=2:CNhs11244 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10441 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10441 | |||
|name=synovial sarcoma cell line:HS-SY-II | |name=synovial sarcoma cell line:HS-SY-II | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 61: | ||
|profile_cagescan=NCig10066,,, | |profile_cagescan=NCig10066,,, | ||
|profile_hcage=CNhs11244,LSID757,release008,COMPLETED | |profile_hcage=CNhs11244,LSID757,release008,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0,0,0,0,0,-0.0966951520988682,0.0636228779875179,-0.213739254205996,-0.250592121583183,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0342179212288246,0,0,0,0,0,-0.0979578962680575,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0,0,0,0,-0.0887328869188802,0,0,0,0,0,0,0,0,-0.0242150211128343,0,0,0,0,0,0.0208759350786056,0.0636228779875179,-0.0969923612426051,0,0,-0.0337207492255791,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.119105089119603,0,0,0,0,0,0,0.0655314912178743,0.0595525445598015,0,0,0.0532375776478433,0.181099980161532,0.084147759045421,0.48444652188491,0,0,0.070260166853136,-0.138477200800895,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0122258348770397,0.0636228779875179,0,0,-0.0486056416475076,-0.12942487175116,0,0,0,0,0,0 | |||
|repeat_enrich_byname=0,0.461387274668828,0,0,0.070260166853136,0,0,0.119105089119603,0,0,0.119105089119603,0,0,0.48444652188491,0,0,-0.0347019489628141,0.407190552945715,0.329659860223238,0.0689617837992785,0,0,0.802836966486316,0,0,0,0.0121515340642309,0.0636228779875179,0.252575821636671,0,0.168295518090842,0,-0.00901477783296166,0,-0.0504125515893149,0.000223680563238307,0,0,0,0,-0.305472230898407,0,0.143141878389577,0.184231560559303,0,0,0,0,0.0867408788184252,0,-0.120879483793741,-0.0827201683234173,0,0.103707711111748,0.0123286018048583,0,0,0,-0.622042926704863,-0.183478537897519,0,0,-0.121779851751874,-0.0550617077423235,0,0,-0.391044581551635,0,-0.207268230912399,-0.171243886035554,0,0.256748285550764,0,0,0,0,0,0,0,0,0,0,0,0.0487449963399385,-0.0377053244162083,0.0684015202558052,0.0636228779875179,0.168295518090842,0,-0.297287370370523,0,0,-0.373286155956567,0.0207777529510365,-0.00155211660378396,0.577759894698207,0.0442092343450519,-0.302389727009913,-0.119395574162287,0.0668965297661403,-0.183969456031372,-0.147401849371139,-0.189981719549847,0,0.0673296576147508,0.048627746381357,0.124423846357695,-0.00705468539269427,0.208420342577556,-0.0872308539969122,-0.237551700410259,0,0,0,-0.21806537270437,0,0.0584793471830771,0.0569637000562859,0.12056284608815,0.0395291250598718,-0.0918265545590492,0.0351301175645221,-0.251458136635998,-0.0395325284566706,-0.204860631259924,-0.0185051547697918,0.160132923264035,0,0,0.00634049763268218,-0.0757259575028175,-0.0275190398856537,-0.363250351542008,0,0.0432106300820894,-0.00472138308985033,0.11595919803918,-0.0144106368087257,-0.0633747240979372,0,0,-0.167542227333508,0,0,0,0.0127190245636746,0.506342902163705,0.0969550462985167,-0.0550456211452564,-0.113750472435942,0,-0.0825982129779175,-0.0073969526463253,-0.0916685785836345,0,0.20740667344203,0.161972765484313,0.0564515657683001,0.0770997969247376,0,0.234945349222881,-0.259627184518163,0.0875851252976681,0.298577082335547,0.866620888437547,-0.095672054697558,0.136426894750235,0.0532375776478433,-0.204621294016831,0.0881692297293369,1.99261893407068,0.00231490053378494,-0.0290510049641231,-0.679498131621524,0,0.223047218985621,0.21247692632275,-0.00165290721991895,0,0.189516588034769,0,-0.229563950568347,-0.0340908493095352,0.709776927689964,-0.135396889575979,0.00659717800515468,-0.0517456087137023,0.346101169794395,0,-0.0724205315780255,-0.0495553874320258,0.383805326795467,0.0179284347562031,-0.0958901463811603,0.155531316983329,0.11246575127834,0,0.378008351056402,0,0,0.260383014686339,0.201558646665561,0.168295518090842,0.111261773774134,0.215559000385668,0.16596696787245,0.00313401568466898,0.168295518090842,0,0.218268277209317,0.0636228779875179,0.680019650409245,0.760416251327263,0.159755014521096,0.234710421595624,-0.0850308233959133,0.108482140626821,0.40848094399274,0,0,-0.0584226768455726,0.119105089119603,0.239800103091539,0,0,-0.0579786332010905,0,0,0.084147759045421,0,0.0483059037590942,0.168295518090842,0,0,0,0.0192228288068506,0,0.00131072656472535,0.171854897109857,0.0289719965790186,0,0.0714084203891172,0,0.0636228779875179,0,0,0,0,0,0,-0.299697265135956,0.246949381482889,0.0452781024144222,0,0,0.11595919803918,0,-0.0032464762307243,0.180568764700743,0.0636228779875179,-0.0682398285101138,0.0636228779875179,0,0,0,0.16643483184746,0,0,0.0318114389937589,0,0.00589242093385388,-0.0376487956847408,0,0,0.0318114389937589,-0.27695440160179,0,0,0,0,-0.0675074569035679,0,0,0,0,-0.0600127503683459,0.7823867356552,0.0595525445598015,0.277344097462945,0.0802835497261554,0.503662037878928,0,0,0.0279361404728731,0,0,0.287039245810758,0,0,0.252416612248667,0,0,0,0,0.323128486157933,0,1.05683945821582,0.0424624939776449,0.506342902163705,0,0,0,0.0636228779875179,0,0.119105089119603,0,0.0318114389937589,0,-0.284858538814789,-0.0286011786709925,0,0,0,0,0,0,0,0.0672579604746573,0.289838995251351,0,0,0.0278895706205967,0,0,0,0,0,0.373381606837318,0,0,0.0636228779875179,0.0587139040125514,0,-0.0969923612426051,0,0,0,0,-0.501184243166366,0,0,-0.213739254205996,0,0,0,0,0,0,0.0682949639633771,0,0,0,0,0,0,0.0891578402873026,-0.215414995189557,0,0,0,0,0,0.0636228779875179,0,-0.211210420218573,0,0,0,0,0.00522071541062584,0,0,0,0.422391707103914,0,-0.0966951520988682,0,0,0,0.0595525445598015,0.0636228779875179,0.156616414263084,0.161564243078966,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19610355215398,0,0.259876139881182,0.00668028835550682,0,0,0.0205430984488108,0,0,0,0,0,0,0.0282121205312744,0.00837953212790701,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0636228779875179,0,0,0,0,0,0.0318114389937589,0.132908920082771,0,0,0,0,0,0,0,-0.0979578962680575,0,0,-0.0284099318130083,0,0,0,0,0,0,-0.0119264182135548,-0.0328916186144134,0.127258716584439,0,0,0,0.249165197400676,0,0,0.0208457665751894,0.0636228779875179,-0.00315450943138346,0.119105089119603,0,0,0,0,0,0,0,0.0636228779875179,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0342179212288246,0,0,0,0,0,0,0,0,0,0,0,0,0.084147759045421,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0318114389937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| |||
|rna_box=106 | |rna_box=106 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
| Line 54: | Line 76: | ||
|rna_rin=9.5 | |rna_rin=9.5 | ||
|rna_sample_type=total RNA | |rna_sample_type=total RNA | ||
|rna_tube_id= | |rna_tube_id=1.06E+11 | ||
|rna_weight_ug=20.71675 | |rna_weight_ug=20.71675 | ||
|sample_age= | |sample_age= | ||
|sample_category=cell lines | |||
|sample_cell_catalog=RCB2231 | |sample_cell_catalog=RCB2231 | ||
|sample_cell_line=HS-SY-II | |sample_cell_line=HS-SY-II | ||
| Line 69: | Line 92: | ||
|sample_ethnicity= | |sample_ethnicity= | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;3.32901864794922e-299!GO:0043231;intracellular membrane-bound organelle;5.26786116796655e-269!GO:0043227;membrane-bound organelle;5.26786116796655e-269!GO:0043226;organelle;6.87509843011092e-267!GO:0043229;intracellular organelle;4.56854200515146e-266!GO:0044422;organelle part;5.2318010783095e-169!GO:0044446;intracellular organelle part;1.56217342411911e-167!GO:0005634;nucleus;1.41022700290284e-155!GO:0005737;cytoplasm;2.1072666973381e-146!GO:0044238;primary metabolic process;2.24634622883632e-118!GO:0044237;cellular metabolic process;2.24634622883632e-118!GO:0043170;macromolecule metabolic process;2.08870651291858e-117!GO:0032991;macromolecular complex;8.10272884356858e-115!GO:0044444;cytoplasmic part;1.66896207483649e-104!GO:0044428;nuclear part;1.73308088840942e-104!GO:0043233;organelle lumen;2.55064552781414e-98!GO:0031974;membrane-enclosed lumen;2.55064552781414e-98!GO:0030529;ribonucleoprotein complex;6.47326739706822e-95!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;4.79444237433505e-92!GO:0003723;RNA binding;5.24946171170371e-90!GO:0010467;gene expression;2.6986088601682e-88!GO:0043283;biopolymer metabolic process;2.26250839595398e-85!GO:0003676;nucleic acid binding;3.0318564120082e-74!GO:0005739;mitochondrion;1.93849047340051e-67!GO:0005515;protein binding;1.88998994601093e-66!GO:0006396;RNA processing;2.49552770754921e-65!GO:0031981;nuclear lumen;3.58000037847965e-65!GO:0043234;protein complex;1.27972629334319e-58!GO:0016043;cellular component organization and biogenesis;2.80148702561984e-56!GO:0016070;RNA metabolic process;2.46767712149006e-55!GO:0005840;ribosome;1.94301220909322e-52!GO:0006259;DNA metabolic process;6.6436710730974e-51!GO:0016071;mRNA metabolic process;3.35668084499302e-49!GO:0006412;translation;2.69408601461934e-47!GO:0044429;mitochondrial part;4.76227104978461e-47!GO:0006996;organelle organization and biogenesis;1.13781837550329e-45!GO:0003735;structural constituent of ribosome;8.91125069221717e-45!GO:0008380;RNA splicing;1.62649646812577e-44!GO:0043228;non-membrane-bound organelle;3.08274074220715e-44!GO:0043232;intracellular non-membrane-bound organelle;3.08274074220715e-44!GO:0006397;mRNA processing;7.47235134636018e-44!GO:0005654;nucleoplasm;6.91201937588851e-43!GO:0031967;organelle envelope;4.80537643173677e-42!GO:0031975;envelope;8.45431955617879e-42!GO:0031090;organelle membrane;6.44779539753666e-41!GO:0033279;ribosomal subunit;3.62026626291508e-39!GO:0033036;macromolecule localization;1.01952843730861e-38!GO:0015031;protein transport;1.1710387929439e-37!GO:0065003;macromolecular complex assembly;2.8628755316733e-37!GO:0022613;ribonucleoprotein complex biogenesis and assembly;9.32976869902778e-37!GO:0019538;protein metabolic process;4.85150523592257e-36!GO:0044451;nucleoplasm part;1.38510895098798e-35!GO:0046907;intracellular transport;6.28231839297156e-35!GO:0007049;cell cycle;1.23085652588764e-34!GO:0008104;protein localization;2.77159546316858e-34!GO:0045184;establishment of protein localization;1.44037967178271e-33!GO:0044249;cellular biosynthetic process;1.48713962165712e-33!GO:0022607;cellular component assembly;2.66518089085097e-32!GO:0009059;macromolecule biosynthetic process;2.82182991179759e-32!GO:0044267;cellular protein metabolic process;2.96333606686636e-32!GO:0009058;biosynthetic process;1.04741556632854e-31!GO:0044260;cellular macromolecule metabolic process;1.26723294353542e-31!GO:0005694;chromosome;2.70343006966372e-31!GO:0005681;spliceosome;2.44391381890973e-30!GO:0000166;nucleotide binding;2.92392699387939e-30!GO:0005829;cytosol;4.40546723653413e-30!GO:0005740;mitochondrial envelope;4.7738716346074e-28!GO:0006886;intracellular protein transport;5.46346360017428e-28!GO:0019866;organelle inner membrane;2.23070237603553e-27!GO:0006974;response to DNA damage stimulus;2.7341174889023e-27!GO:0005830;cytosolic ribosome (sensu Eukaryota);3.58945236906014e-27!GO:0044427;chromosomal part;4.49868411883322e-27!GO:0022402;cell cycle process;7.40416287271015e-27!GO:0051276;chromosome organization and biogenesis;1.71989559260242e-26!GO:0031966;mitochondrial membrane;3.06356842409472e-26!GO:0000278;mitotic cell cycle;2.87441491809251e-25!GO:0005743;mitochondrial inner membrane;5.9661509275241e-25!GO:0006281;DNA repair;8.0130733773076e-24!GO:0051301;cell division;1.11205734375219e-23!GO:0016462;pyrophosphatase activity;3.87803810696257e-23!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;5.6927707632119e-23!GO:0017111;nucleoside-triphosphatase activity;6.36568210569971e-23!GO:0016817;hydrolase activity, acting on acid anhydrides;8.6728794528838e-23!GO:0006119;oxidative phosphorylation;2.12855949342059e-22!GO:0005730;nucleolus;4.38363122790941e-22!GO:0031980;mitochondrial lumen;4.38363122790941e-22!GO:0005759;mitochondrial matrix;4.38363122790941e-22!GO:0044445;cytosolic part;5.12615244132944e-22!GO:0006325;establishment and/or maintenance of chromatin architecture;6.1099025412246e-22!GO:0044455;mitochondrial membrane part;7.22402962596986e-22!GO:0051649;establishment of cellular localization;1.38709933525051e-21!GO:0051641;cellular localization;2.38623682848813e-21!GO:0015935;small ribosomal subunit;2.78219543511866e-21!GO:0006323;DNA packaging;4.35293551761794e-21!GO:0008134;transcription factor binding;1.28259211450743e-20!GO:0006366;transcription from RNA polymerase II promoter;1.30061476301162e-20!GO:0022618;protein-RNA complex assembly;1.43716398385986e-20!GO:0019222;regulation of metabolic process;1.54537504800249e-20!GO:0006457;protein folding;2.52031681336127e-20!GO:0022403;cell cycle phase;2.97458601737585e-20!GO:0000087;M phase of mitotic cell cycle;4.76044543079386e-20!GO:0050794;regulation of cellular process;7.95805847232137e-20!GO:0007067;mitosis;1.51028670292763e-19!GO:0006350;transcription;2.77394537119667e-19!GO:0032553;ribonucleotide binding;3.51882092814751e-19!GO:0032555;purine ribonucleotide binding;3.51882092814751e-19!GO:0009719;response to endogenous stimulus;3.73346043676781e-19!GO:0015934;large ribosomal subunit;4.31916057475973e-19!GO:0006260;DNA replication;4.99681332451661e-19!GO:0016874;ligase activity;6.0415615455835e-19!GO:0006512;ubiquitin cycle;7.8927378677158e-19!GO:0017076;purine nucleotide binding;2.02210490229929e-18!GO:0031323;regulation of cellular metabolic process;5.80601118731411e-18!GO:0000279;M phase;6.36601671290592e-18!GO:0005746;mitochondrial respiratory chain;1.02102752666728e-17!GO:0004386;helicase activity;2.01432173645221e-17!GO:0008135;translation factor activity, nucleic acid binding;2.72790643271423e-17!GO:0003677;DNA binding;3.26930144770236e-17!GO:0042254;ribosome biogenesis and assembly;4.76440492506093e-17!GO:0000398;nuclear mRNA splicing, via spliceosome;1.19090854598202e-16!GO:0000375;RNA splicing, via transesterification reactions;1.19090854598202e-16!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;1.19090854598202e-16!GO:0044265;cellular macromolecule catabolic process;1.19534342826841e-16!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.31368709359551e-16!GO:0031965;nuclear membrane;1.35314582615136e-16!GO:0005761;mitochondrial ribosome;1.58743632323264e-16!GO:0000313;organellar ribosome;1.58743632323264e-16!GO:0010468;regulation of gene expression;1.71244224153046e-16!GO:0032774;RNA biosynthetic process;2.27395582232698e-16!GO:0000785;chromatin;3.18881248107917e-16!GO:0051603;proteolysis involved in cellular protein catabolic process;3.26145386113106e-16!GO:0005524;ATP binding;3.35168013416761e-16!GO:0006605;protein targeting;3.49181617549849e-16!GO:0006351;transcription, DNA-dependent;3.6319977919004e-16!GO:0006511;ubiquitin-dependent protein catabolic process;3.8912511068115e-16!GO:0032559;adenyl ribonucleotide binding;4.75309245583155e-16!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;5.08951645034581e-16!GO:0019941;modification-dependent protein catabolic process;5.10142116489239e-16!GO:0043632;modification-dependent macromolecule catabolic process;5.10142116489239e-16!GO:0044257;cellular protein catabolic process;1.03725423855923e-15!GO:0016887;ATPase activity;1.07019052756842e-15!GO:0050136;NADH dehydrogenase (quinone) activity;1.22287821160308e-15!GO:0003954;NADH dehydrogenase activity;1.22287821160308e-15!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.22287821160308e-15!GO:0042623;ATPase activity, coupled;2.95223150188124e-15!GO:0012505;endomembrane system;2.95935694913788e-15!GO:0030554;adenyl nucleotide binding;3.21065448483047e-15!GO:0016604;nuclear body;4.23730999190061e-15!GO:0065004;protein-DNA complex assembly;5.20565761212053e-15!GO:0005635;nuclear envelope;6.24399864703392e-15!GO:0006333;chromatin assembly or disassembly;6.593571620142e-15!GO:0044453;nuclear membrane part;7.92894600310319e-15!GO:0043285;biopolymer catabolic process;1.09803736268552e-14!GO:0008026;ATP-dependent helicase activity;1.16391758008986e-14!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);1.89781297747417e-14!GO:0045449;regulation of transcription;2.57364361142282e-14!GO:0000502;proteasome complex (sensu Eukaryota);4.0053468709493e-14!GO:0042775;organelle ATP synthesis coupled electron transport;4.5137213830513e-14!GO:0042773;ATP synthesis coupled electron transport;4.5137213830513e-14!GO:0050789;regulation of biological process;4.78694496426275e-14!GO:0006399;tRNA metabolic process;7.22165436324199e-14!GO:0015630;microtubule cytoskeleton;7.681581031188e-14!GO:0048770;pigment granule;1.01944831317722e-13!GO:0042470;melanosome;1.01944831317722e-13!GO:0009057;macromolecule catabolic process;1.28751299156027e-13!GO:0030964;NADH dehydrogenase complex (quinone);1.29171610019709e-13!GO:0045271;respiratory chain complex I;1.29171610019709e-13!GO:0005747;mitochondrial respiratory chain complex I;1.29171610019709e-13!GO:0016568;chromatin modification;2.18030674141949e-13!GO:0016607;nuclear speck;2.34852175269986e-13!GO:0003712;transcription cofactor activity;2.96261804359316e-13!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;4.00111380373967e-13!GO:0051082;unfolded protein binding;4.20693647967452e-13!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);4.36252161047974e-13!GO:0050657;nucleic acid transport;4.43567450685794e-13!GO:0051236;establishment of RNA localization;4.43567450685794e-13!GO:0050658;RNA transport;4.43567450685794e-13!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;4.75307423751499e-13!GO:0005783;endoplasmic reticulum;6.10684761024148e-13!GO:0005643;nuclear pore;6.10684761024148e-13!GO:0006355;regulation of transcription, DNA-dependent;6.87799145669107e-13!GO:0006913;nucleocytoplasmic transport;6.95937880084346e-13!GO:0051726;regulation of cell cycle;7.21692125727936e-13!GO:0006403;RNA localization;7.62233501382632e-13!GO:0000074;regulation of progression through cell cycle;7.8570914442456e-13!GO:0003743;translation initiation factor activity;7.8570914442456e-13!GO:0030163;protein catabolic process;9.24894615918738e-13!GO:0006413;translational initiation;1.05346878983497e-12!GO:0051169;nuclear transport;2.21051523591774e-12!GO:0065002;intracellular protein transport across a membrane;2.67019277901503e-12!GO:0005667;transcription factor complex;5.05046036350065e-12!GO:0044432;endoplasmic reticulum part;5.11887903293285e-12!GO:0006364;rRNA processing;6.33573965397913e-12!GO:0048193;Golgi vesicle transport;8.54328200306864e-12!GO:0016072;rRNA metabolic process;1.6326164566289e-11!GO:0006446;regulation of translational initiation;2.7416645386879e-11!GO:0006357;regulation of transcription from RNA polymerase II promoter;2.79968715108228e-11!GO:0008565;protein transporter activity;4.8600891547865e-11!GO:0051028;mRNA transport;5.49782483000104e-11!GO:0043412;biopolymer modification;5.50416710215354e-11!GO:0046930;pore complex;5.62342626055242e-11!GO:0051186;cofactor metabolic process;5.82903099178714e-11!GO:0044248;cellular catabolic process;6.08885673343725e-11!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;1.72964861787352e-10!GO:0009259;ribonucleotide metabolic process;2.6131991804221e-10!GO:0043566;structure-specific DNA binding;2.65783046206956e-10!GO:0006334;nucleosome assembly;4.25014866426746e-10!GO:0000775;chromosome, pericentric region;5.62483712526044e-10!GO:0006163;purine nucleotide metabolic process;6.78255706950496e-10!GO:0031497;chromatin assembly;7.35718804000034e-10!GO:0003682;chromatin binding;9.64785770294625e-10!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;1.04987054833118e-09!GO:0017038;protein import;1.13054596762294e-09!GO:0045333;cellular respiration;1.98500047845827e-09!GO:0006164;purine nucleotide biosynthetic process;2.06714615267983e-09!GO:0006261;DNA-dependent DNA replication;2.09022542631882e-09!GO:0009260;ribonucleotide biosynthetic process;2.30559274340892e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;2.31005212159826e-09!GO:0005794;Golgi apparatus;3.49254070439646e-09!GO:0009150;purine ribonucleotide metabolic process;3.69911779230361e-09!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;3.92316215842961e-09!GO:0009060;aerobic respiration;4.70531044184758e-09!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;5.60135185615706e-09!GO:0004812;aminoacyl-tRNA ligase activity;5.60135185615706e-09!GO:0016875;ligase activity, forming carbon-oxygen bonds;5.60135185615706e-09!GO:0003697;single-stranded DNA binding;7.03549883758089e-09!GO:0006464;protein modification process;8.02209426523438e-09!GO:0016879;ligase activity, forming carbon-nitrogen bonds;1.02894144326136e-08!GO:0006732;coenzyme metabolic process;1.1001119756334e-08!GO:0009152;purine ribonucleotide biosynthetic process;1.11734971294311e-08!GO:0008639;small protein conjugating enzyme activity;1.1377895612607e-08!GO:0016563;transcription activator activity;1.16105431481336e-08!GO:0043038;amino acid activation;1.30379086156461e-08!GO:0006418;tRNA aminoacylation for protein translation;1.30379086156461e-08!GO:0043039;tRNA aminoacylation;1.30379086156461e-08!GO:0005819;spindle;1.38049680250699e-08!GO:0009055;electron carrier activity;1.48988885426821e-08!GO:0005813;centrosome;1.79597598730429e-08!GO:0006461;protein complex assembly;1.81225598078864e-08!GO:0031324;negative regulation of cellular metabolic process;1.9481731953761e-08!GO:0043687;post-translational protein modification;1.9481731953761e-08!GO:0009199;ribonucleoside triphosphate metabolic process;2.02528741765517e-08!GO:0004842;ubiquitin-protein ligase activity;2.02862774456485e-08!GO:0009141;nucleoside triphosphate metabolic process;2.47668091640688e-08!GO:0009142;nucleoside triphosphate biosynthetic process;2.5896472570813e-08!GO:0009201;ribonucleoside triphosphate biosynthetic process;2.5896472570813e-08!GO:0019787;small conjugating protein ligase activity;2.64676452204167e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;2.69191590412192e-08!GO:0016779;nucleotidyltransferase activity;2.77480517771699e-08!GO:0007005;mitochondrion organization and biogenesis;3.24663306903317e-08!GO:0003702;RNA polymerase II transcription factor activity;3.31699149729887e-08!GO:0009205;purine ribonucleoside triphosphate metabolic process;3.70192070413068e-08!GO:0009144;purine nucleoside triphosphate metabolic process;3.70192070413068e-08!GO:0042175;nuclear envelope-endoplasmic reticulum network;3.73008167366698e-08!GO:0016481;negative regulation of transcription;4.42636938436705e-08!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;4.85850042522631e-08!GO:0009145;purine nucleoside triphosphate biosynthetic process;4.85850042522631e-08!GO:0007051;spindle organization and biogenesis;5.44821614264268e-08!GO:0005789;endoplasmic reticulum membrane;5.87526488563691e-08!GO:0005815;microtubule organizing center;6.30180477093682e-08!GO:0015078;hydrogen ion transmembrane transporter activity;6.89822524751299e-08!GO:0030532;small nuclear ribonucleoprotein complex;7.40253115366337e-08!GO:0015986;ATP synthesis coupled proton transport;8.10917554462369e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;8.10917554462369e-08!GO:0003899;DNA-directed RNA polymerase activity;8.17924779237875e-08!GO:0065007;biological regulation;8.2641309569796e-08!GO:0000245;spliceosome assembly;1.07538132317972e-07!GO:0006099;tricarboxylic acid cycle;1.38403204758276e-07!GO:0046356;acetyl-CoA catabolic process;1.38403204758276e-07!GO:0016564;transcription repressor activity;1.61714908477809e-07!GO:0016192;vesicle-mediated transport;1.84730257020738e-07!GO:0019829;cation-transporting ATPase activity;2.00961464843335e-07!GO:0009892;negative regulation of metabolic process;2.0769644686259e-07!GO:0006084;acetyl-CoA metabolic process;2.77746533410102e-07!GO:0016881;acid-amino acid ligase activity;2.7848466881458e-07!GO:0003713;transcription coactivator activity;3.11441554039637e-07!GO:0008094;DNA-dependent ATPase activity;3.24173958399723e-07!GO:0003724;RNA helicase activity;3.38337788218828e-07!GO:0051329;interphase of mitotic cell cycle;3.48439242188689e-07!GO:0031202;RNA splicing factor activity, transesterification mechanism;3.51474015042679e-07!GO:0043623;cellular protein complex assembly;4.28053780331541e-07!GO:0005874;microtubule;4.4958713303249e-07!GO:0032446;protein modification by small protein conjugation;4.92180076758945e-07!GO:0048523;negative regulation of cellular process;5.34606012962684e-07!GO:0000075;cell cycle checkpoint;5.90045823781067e-07!GO:0006606;protein import into nucleus;6.85686022885128e-07!GO:0006888;ER to Golgi vesicle-mediated transport;6.88987223905092e-07!GO:0051170;nuclear import;8.30079523583386e-07!GO:0046034;ATP metabolic process;8.55905333899141e-07!GO:0016853;isomerase activity;9.1744173250152e-07!GO:0009109;coenzyme catabolic process;9.61796347644976e-07!GO:0006754;ATP biosynthetic process;1.01253865128668e-06!GO:0006753;nucleoside phosphate metabolic process;1.01253865128668e-06!GO:0016567;protein ubiquitination;1.04297475137054e-06!GO:0016469;proton-transporting two-sector ATPase complex;1.3360067969249e-06!GO:0045259;proton-transporting ATP synthase complex;1.60223311190886e-06!GO:0016363;nuclear matrix;1.71665626008713e-06!GO:0005788;endoplasmic reticulum lumen;1.73927425423401e-06!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;1.74845530325921e-06!GO:0008033;tRNA processing;2.50658379547877e-06!GO:0051325;interphase;3.15062314098982e-06!GO:0016859;cis-trans isomerase activity;3.23267815471732e-06!GO:0000151;ubiquitin ligase complex;3.27243508444199e-06!GO:0051187;cofactor catabolic process;3.41514636992333e-06!GO:0007017;microtubule-based process;3.91415306834643e-06!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;4.41570168530633e-06!GO:0051427;hormone receptor binding;4.60485315533228e-06!GO:0044452;nucleolar part;4.78222865175761e-06!GO:0005762;mitochondrial large ribosomal subunit;4.8824800215422e-06!GO:0000315;organellar large ribosomal subunit;4.8824800215422e-06!GO:0006613;cotranslational protein targeting to membrane;6.18346308361133e-06!GO:0005657;replication fork;6.24114994135079e-06!GO:0051168;nuclear export;6.65446555936194e-06!GO:0051052;regulation of DNA metabolic process;6.85404566877779e-06!GO:0000776;kinetochore;7.0549434087954e-06!GO:0006302;double-strand break repair;8.17162074045749e-06!GO:0045786;negative regulation of progression through cell cycle;8.46434454258439e-06!GO:0016740;transferase activity;8.91713385290193e-06!GO:0015077;monovalent inorganic cation transmembrane transporter activity;9.0000549588661e-06!GO:0003924;GTPase activity;9.18354414558878e-06!GO:0035257;nuclear hormone receptor binding;1.00220983279679e-05!GO:0003714;transcription corepressor activity;1.08398621695513e-05!GO:0000314;organellar small ribosomal subunit;1.10680707614881e-05!GO:0005763;mitochondrial small ribosomal subunit;1.10680707614881e-05!GO:0006626;protein targeting to mitochondrion;1.36429618939957e-05!GO:0006352;transcription initiation;1.46309511656557e-05!GO:0051188;cofactor biosynthetic process;1.57682574277526e-05!GO:0006839;mitochondrial transport;1.86838876593969e-05!GO:0048519;negative regulation of biological process;1.88290722662838e-05!GO:0008186;RNA-dependent ATPase activity;1.9359889230093e-05!GO:0009056;catabolic process;2.03734817595309e-05!GO:0003690;double-stranded DNA binding;2.33136337570691e-05!GO:0003678;DNA helicase activity;2.33396009155069e-05!GO:0048475;coated membrane;2.40236557409255e-05!GO:0030117;membrane coat;2.40236557409255e-05!GO:0000786;nucleosome;2.51921174328762e-05!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;2.58159388568612e-05!GO:0008654;phospholipid biosynthetic process;2.63258682580569e-05!GO:0030120;vesicle coat;2.639498015061e-05!GO:0030662;coated vesicle membrane;2.639498015061e-05!GO:0044440;endosomal part;2.639498015061e-05!GO:0010008;endosome membrane;2.639498015061e-05!GO:0005525;GTP binding;2.87889337777842e-05!GO:0005768;endosome;2.9154598541565e-05!GO:0009117;nucleotide metabolic process;3.00924986891482e-05!GO:0016251;general RNA polymerase II transcription factor activity;3.06714996869187e-05!GO:0043021;ribonucleoprotein binding;3.25778759462788e-05!GO:0003684;damaged DNA binding;3.61055178281181e-05!GO:0045454;cell redox homeostasis;4.50121404000391e-05!GO:0045892;negative regulation of transcription, DNA-dependent;4.60030978255523e-05!GO:0006752;group transfer coenzyme metabolic process;4.72265032548967e-05!GO:0005793;ER-Golgi intermediate compartment;5.66396803434387e-05!GO:0003729;mRNA binding;5.80125838640146e-05!GO:0004004;ATP-dependent RNA helicase activity;6.07121751851092e-05!GO:0006310;DNA recombination;6.67811646254125e-05!GO:0005839;proteasome core complex (sensu Eukaryota);7.36201035137476e-05!GO:0000228;nuclear chromosome;8.8684952344722e-05!GO:0007052;mitotic spindle organization and biogenesis;9.83319902626473e-05!GO:0030880;RNA polymerase complex;9.95286719011942e-05!GO:0006414;translational elongation;0.000100679192801862!GO:0000792;heterochromatin;0.000106058399395854!GO:0007059;chromosome segregation;0.000106158532509533!GO:0012501;programmed cell death;0.00011856386791086!GO:0006383;transcription from RNA polymerase III promoter;0.000129743036905057!GO:0007010;cytoskeleton organization and biogenesis;0.000156790837199241!GO:0006915;apoptosis;0.000159703748188963!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.000159703748188963!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.000168374418079084!GO:0007006;mitochondrial membrane organization and biogenesis;0.000172921000121006!GO:0043681;protein import into mitochondrion;0.000173067394776006!GO:0008168;methyltransferase activity;0.000173232994965471!GO:0006402;mRNA catabolic process;0.00019104108933353!GO:0016741;transferase activity, transferring one-carbon groups;0.000191362370140574!GO:0004298;threonine endopeptidase activity;0.000214339751725164!GO:0051246;regulation of protein metabolic process;0.000216726891722284!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.000236140939849324!GO:0007093;mitotic cell cycle checkpoint;0.000238464135150741!GO:0006338;chromatin remodeling;0.000239192738785255!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00025432851619272!GO:0000428;DNA-directed RNA polymerase complex;0.00025432851619272!GO:0009108;coenzyme biosynthetic process;0.000266638214955695!GO:0005798;Golgi-associated vesicle;0.000266638214955695!GO:0000059;protein import into nucleus, docking;0.000271262297894505!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000365744312304456!GO:0044431;Golgi apparatus part;0.000369813001179985!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000369920776362793!GO:0032561;guanyl ribonucleotide binding;0.000385476545294583!GO:0019001;guanyl nucleotide binding;0.000385476545294583!GO:0006612;protein targeting to membrane;0.000387373106472059!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000408458820586852!GO:0008250;oligosaccharyl transferase complex;0.000426236131858971!GO:0005684;U2-dependent spliceosome;0.000426236131858971!GO:0008219;cell death;0.000456246436428575!GO:0016265;death;0.000456246436428575!GO:0045941;positive regulation of transcription;0.000478539179845449!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000484967666612909!GO:0015631;tubulin binding;0.000493376902235493!GO:0005876;spindle microtubule;0.000579910934245072!GO:0005770;late endosome;0.000581983659084083!GO:0007088;regulation of mitosis;0.0005856204207183!GO:0051920;peroxiredoxin activity;0.000591373381479884!GO:0006401;RNA catabolic process;0.000593195207178774!GO:0000910;cytokinesis;0.000659717952518928!GO:0046474;glycerophospholipid biosynthetic process;0.000695093388069665!GO:0031124;mRNA 3'-end processing;0.000695093388069665!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.000719207584900476!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00072342006350497!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00072342006350497!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00072342006350497!GO:0045893;positive regulation of transcription, DNA-dependent;0.00072342006350497!GO:0005852;eukaryotic translation initiation factor 3 complex;0.000757934479261493!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00076028822611064!GO:0005905;coated pit;0.00076802942536165!GO:0006275;regulation of DNA replication;0.000818032505306868!GO:0006405;RNA export from nucleus;0.000833937258491425!GO:0016281;eukaryotic translation initiation factor 4F complex;0.000839830674329248!GO:0000082;G1/S transition of mitotic cell cycle;0.000859258654838025!GO:0032508;DNA duplex unwinding;0.000867567583129216!GO:0032392;DNA geometric change;0.000867567583129216!GO:0015980;energy derivation by oxidation of organic compounds;0.000902641303297037!GO:0006793;phosphorus metabolic process;0.000921493434443004!GO:0006796;phosphate metabolic process;0.000921493434443004!GO:0000922;spindle pole;0.000923654638719883!GO:0005885;Arp2/3 protein complex;0.000957971490943332!GO:0030867;rough endoplasmic reticulum membrane;0.00114550274716276!GO:0004576;oligosaccharyl transferase activity;0.00114631200009699!GO:0016310;phosphorylation;0.00123405466882356!GO:0006891;intra-Golgi vesicle-mediated transport;0.00123405466882356!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00125355670826884!GO:0005048;signal sequence binding;0.00131437119104548!GO:0004527;exonuclease activity;0.0013585544703974!GO:0051087;chaperone binding;0.00145248083688044!GO:0005637;nuclear inner membrane;0.00153421176924848!GO:0016126;sterol biosynthetic process;0.00154622220731298!GO:0048500;signal recognition particle;0.00156156967114883!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00172805293082505!GO:0015002;heme-copper terminal oxidase activity;0.00172805293082505!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00172805293082505!GO:0004129;cytochrome-c oxidase activity;0.00172805293082505!GO:0051789;response to protein stimulus;0.00184762847808578!GO:0006986;response to unfolded protein;0.00184762847808578!GO:0006916;anti-apoptosis;0.0019453195648158!GO:0003746;translation elongation factor activity;0.00195513689593762!GO:0031123;RNA 3'-end processing;0.00201065334736244!GO:0043624;cellular protein complex disassembly;0.00201845135219113!GO:0009165;nucleotide biosynthetic process;0.00206357547891221!GO:0006289;nucleotide-excision repair;0.00210219561324519!GO:0032200;telomere organization and biogenesis;0.00219851171665679!GO:0000723;telomere maintenance;0.00219851171665679!GO:0031252;leading edge;0.00219887931573055!GO:0006268;DNA unwinding during replication;0.00228724846169313!GO:0030521;androgen receptor signaling pathway;0.0023783529754562!GO:0008312;7S RNA binding;0.00259581222285532!GO:0030176;integral to endoplasmic reticulum membrane;0.00274232595843013!GO:0048471;perinuclear region of cytoplasm;0.00284242914206995!GO:0004003;ATP-dependent DNA helicase activity;0.00288220716640306!GO:0044454;nuclear chromosome part;0.00298481951128341!GO:0000049;tRNA binding;0.00298630148187756!GO:0046489;phosphoinositide biosynthetic process;0.00298630148187756!GO:0006378;mRNA polyadenylation;0.00324261794001521!GO:0003711;transcription elongation regulator activity;0.00324261794001521!GO:0051098;regulation of binding;0.00324261794001521!GO:0006367;transcription initiation from RNA polymerase II promoter;0.00324261794001521!GO:0051252;regulation of RNA metabolic process;0.00325634149395969!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.00327005544912663!GO:0018196;peptidyl-asparagine modification;0.00336385475049774!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00336385475049774!GO:0004518;nuclease activity;0.00338089831546029!GO:0048487;beta-tubulin binding;0.00338089831546029!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0033877421885979!GO:0045047;protein targeting to ER;0.0033877421885979!GO:0032259;methylation;0.00345905449958068!GO:0019843;rRNA binding;0.00346438315761596!GO:0006144;purine base metabolic process;0.00351899928635325!GO:0031968;organelle outer membrane;0.00357220093772662!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.00367867720080592!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00367867720080592!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00367867720080592!GO:0032984;macromolecular complex disassembly;0.00380638655610226!GO:0008022;protein C-terminus binding;0.00384817245813896!GO:0019867;outer membrane;0.00398619114128655!GO:0016584;nucleosome positioning;0.00399020979347735!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00402039471915199!GO:0015992;proton transport;0.00415170758441585!GO:0005791;rough endoplasmic reticulum;0.00421560452156947!GO:0031072;heat shock protein binding;0.00421560452156947!GO:0006695;cholesterol biosynthetic process;0.00440296161717099!GO:0000790;nuclear chromatin;0.00446162968785474!GO:0006818;hydrogen transport;0.00471766581058543!GO:0040029;regulation of gene expression, epigenetic;0.00478711661741297!GO:0043414;biopolymer methylation;0.00482005528981667!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00508069165560061!GO:0015399;primary active transmembrane transporter activity;0.00508069165560061!GO:0006611;protein export from nucleus;0.00510188848934771!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;0.00564721713673683!GO:0042393;histone binding;0.00590795857073981!GO:0008139;nuclear localization sequence binding;0.00615007420304986!GO:0016787;hydrolase activity;0.00616986999507732!GO:0000725;recombinational repair;0.00618928263008137!GO:0000724;double-strand break repair via homologous recombination;0.00618928263008137!GO:0030663;COPI coated vesicle membrane;0.00620536950332153!GO:0030126;COPI vesicle coat;0.00620536950332153!GO:0005741;mitochondrial outer membrane;0.00635063364266526!GO:0006400;tRNA modification;0.00643380326900965!GO:0031570;DNA integrity checkpoint;0.00658126495077889!GO:0043241;protein complex disassembly;0.00677969909510411!GO:0043069;negative regulation of programmed cell death;0.00692025517597665!GO:0035258;steroid hormone receptor binding;0.00700347054643786!GO:0005665;DNA-directed RNA polymerase II, core complex;0.00702416256807937!GO:0005758;mitochondrial intermembrane space;0.0070473098410288!GO:0000139;Golgi membrane;0.00725460326448864!GO:0000819;sister chromatid segregation;0.00725460326448864!GO:0006284;base-excision repair;0.00730629759171747!GO:0033116;ER-Golgi intermediate compartment membrane;0.00744685709503!GO:0006595;polyamine metabolic process;0.00752799973915554!GO:0008276;protein methyltransferase activity;0.00767012401270517!GO:0042981;regulation of apoptosis;0.00767534130206871!GO:0031988;membrane-bound vesicle;0.0077517854973013!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.00794226937748944!GO:0005769;early endosome;0.0079672592164856!GO:0046966;thyroid hormone receptor binding;0.00810691177957762!GO:0043066;negative regulation of apoptosis;0.00817995718077273!GO:0006360;transcription from RNA polymerase I promoter;0.00818076777850136!GO:0046467;membrane lipid biosynthetic process;0.00818215856714392!GO:0000070;mitotic sister chromatid segregation;0.00834820691849775!GO:0005832;chaperonin-containing T-complex;0.00848170562327168!GO:0016272;prefoldin complex;0.00876019319705623!GO:0006091;generation of precursor metabolites and energy;0.00907655308491585!GO:0006220;pyrimidine nucleotide metabolic process;0.00916267046391824!GO:0022890;inorganic cation transmembrane transporter activity;0.00920611037961266!GO:0043488;regulation of mRNA stability;0.00924581534298386!GO:0043487;regulation of RNA stability;0.00924581534298386!GO:0007021;tubulin folding;0.00931024346169251!GO:0043067;regulation of programmed cell death;0.00933980606320112!GO:0000178;exosome (RNase complex);0.00935298501676834!GO:0005669;transcription factor TFIID complex;0.0095609336999173!GO:0000339;RNA cap binding;0.00960786195516805!GO:0031982;vesicle;0.00969275447130248!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00974206723258018!GO:0019899;enzyme binding;0.00981725829059738!GO:0009303;rRNA transcription;0.00996573257729434!GO:0009451;RNA modification;0.0100839663159568!GO:0030137;COPI-coated vesicle;0.0104164090893682!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.0106360915098487!GO:0016023;cytoplasmic membrane-bound vesicle;0.0106870268584623!GO:0008017;microtubule binding;0.0107172075650483!GO:0005875;microtubule associated complex;0.0109770847975345!GO:0030518;steroid hormone receptor signaling pathway;0.0112137642815811!GO:0016891;endoribonuclease activity, producing 5'-phosphomonoesters;0.011384567172477!GO:0022884;macromolecule transmembrane transporter activity;0.0116653912050241!GO:0015450;P-P-bond-hydrolysis-driven protein transmembrane transporter activity;0.0116653912050241!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0118269433211406!GO:0031902;late endosome membrane;0.0118668592016642!GO:0030027;lamellipodium;0.0118668592016642!GO:0005720;nuclear heterochromatin;0.0120837830293132!GO:0005869;dynactin complex;0.0121035127470597!GO:0043022;ribosome binding;0.0122068219892888!GO:0008320;protein transmembrane transporter activity;0.0131298427639647!GO:0000781;chromosome, telomeric region;0.013273871071131!GO:0030134;ER to Golgi transport vesicle;0.0133015315918408!GO:0016491;oxidoreductase activity;0.0136177797599508!GO:0000209;protein polyubiquitination;0.0136542548102692!GO:0031410;cytoplasmic vesicle;0.0138906263512743!GO:0009112;nucleobase metabolic process;0.0141649693250749!GO:0043631;RNA polyadenylation;0.0148985856626496!GO:0006607;NLS-bearing substrate import into nucleus;0.0149942783611406!GO:0051539;4 iron, 4 sulfur cluster binding;0.0150587797784926!GO:0043596;nuclear replication fork;0.0154445791811359!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0154782773598012!GO:0000077;DNA damage checkpoint;0.0155841187592679!GO:0016585;chromatin remodeling complex;0.0155884337741132!GO:0000123;histone acetyltransferase complex;0.0156939857602143!GO:0042770;DNA damage response, signal transduction;0.0159620051244939!GO:0008408;3'-5' exonuclease activity;0.016457266459874!GO:0022411;cellular component disassembly;0.0170131603720011!GO:0004532;exoribonuclease activity;0.0174348676616348!GO:0016896;exoribonuclease activity, producing 5'-phosphomonoesters;0.0174348676616348!GO:0031577;spindle checkpoint;0.0174698079012692!GO:0043284;biopolymer biosynthetic process;0.0176005219090683!GO:0000726;non-recombinational repair;0.0177798143285932!GO:0016569;covalent chromatin modification;0.0177896916233544!GO:0005853;eukaryotic translation elongation factor 1 complex;0.0178653835312083!GO:0035267;NuA4 histone acetyltransferase complex;0.0179572543108969!GO:0031970;organelle envelope lumen;0.0181519608370573!GO:0006356;regulation of transcription from RNA polymerase I promoter;0.0184942382167458!GO:0043189;H4/H2A histone acetyltransferase complex;0.0191254895950108!GO:0006497;protein amino acid lipidation;0.0191940616327055!GO:0030384;phosphoinositide metabolic process;0.0193179367962159!GO:0051053;negative regulation of DNA metabolic process;0.0194073724743335!GO:0016893;endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.0194088757529364!GO:0042158;lipoprotein biosynthetic process;0.0194451681424785!GO:0016044;membrane organization and biogenesis;0.0194731777968705!GO:0006650;glycerophospholipid metabolic process;0.0198312127531154!GO:0006740;NADPH regeneration;0.0205271976425034!GO:0006098;pentose-phosphate shunt;0.0205271976425034!GO:0006270;DNA replication initiation;0.0205477205994124!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0210815929908158!GO:0010257;NADH dehydrogenase complex assembly;0.0210815929908158!GO:0033108;mitochondrial respiratory chain complex assembly;0.0210815929908158!GO:0000152;nuclear ubiquitin ligase complex;0.0211529187172825!GO:0046982;protein heterodimerization activity;0.0211692103603201!GO:0016407;acetyltransferase activity;0.0213824786828087!GO:0006541;glutamine metabolic process;0.021981930588265!GO:0047485;protein N-terminus binding;0.0222663620108655!GO:0008180;signalosome;0.0226800953105425!GO:0030118;clathrin coat;0.0227445494719371!GO:0065009;regulation of a molecular function;0.0227499305783205!GO:0031625;ubiquitin protein ligase binding;0.0237680082356295!GO:0007004;telomere maintenance via telomerase;0.0240016843297141!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0240283569602394!GO:0005862;muscle thin filament tropomyosin;0.0242229395076362!GO:0030658;transport vesicle membrane;0.0242739020630593!GO:0001832;blastocyst growth;0.024374179914595!GO:0030522;intracellular receptor-mediated signaling pathway;0.0246361303966575!GO:0051287;NAD binding;0.0246838913066413!GO:0042026;protein refolding;0.0257289486273556!GO:0030127;COPII vesicle coat;0.0258983334765052!GO:0012507;ER to Golgi transport vesicle membrane;0.0258983334765052!GO:0044262;cellular carbohydrate metabolic process;0.026266347756062!GO:0051540;metal cluster binding;0.0268539300680959!GO:0051536;iron-sulfur cluster binding;0.0268539300680959!GO:0005773;vacuole;0.0275242630519067!GO:0006007;glucose catabolic process;0.0287465165277192!GO:0042809;vitamin D receptor binding;0.0290961220539706!GO:0030330;DNA damage response, signal transduction by p53 class mediator;0.0294057744052227!GO:0000096;sulfur amino acid metabolic process;0.029667019469798!GO:0019783;small conjugating protein-specific protease activity;0.0302325113617414!GO:0042719;mitochondrial intermembrane space protein transporter complex;0.0302924538917923!GO:0045039;protein import into mitochondrial inner membrane;0.0302924538917923!GO:0005663;DNA replication factor C complex;0.0302924538917923!GO:0031371;ubiquitin conjugating enzyme complex;0.031575055317298!GO:0030374;ligand-dependent nuclear receptor transcription coactivator activity;0.0317484941834903!GO:0030132;clathrin coat of coated pit;0.0318742953819304!GO:0043130;ubiquitin binding;0.0318742953819304!GO:0032182;small conjugating protein binding;0.0318742953819304!GO:0008538;proteasome activator activity;0.0326921929998248!GO:0042802;identical protein binding;0.0332483934746601!GO:0006221;pyrimidine nucleotide biosynthetic process;0.0334034371554804!GO:0006730;one-carbon compound metabolic process;0.0335049513572272!GO:0005784;translocon complex;0.0338641616681043!GO:0016408;C-acyltransferase activity;0.0339420753470545!GO:0045947;negative regulation of translational initiation;0.0339945151354534!GO:0008536;Ran GTPase binding;0.0340197027364642!GO:0006506;GPI anchor biosynthetic process;0.0344655866513799!GO:0003857;3-hydroxyacyl-CoA dehydrogenase activity;0.0346574871796332!GO:0007050;cell cycle arrest;0.0349580142630833!GO:0043601;nuclear replisome;0.0354142098430358!GO:0030894;replisome;0.0354142098430358!GO:0004674;protein serine/threonine kinase activity;0.035766754696381!GO:0048522;positive regulation of cellular process;0.0357817828851938!GO:0006376;mRNA splice site selection;0.0358986395522125!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0358986395522125!GO:0003727;single-stranded RNA binding;0.0360470242704408!GO:0004843;ubiquitin-specific protease activity;0.0362370617382601!GO:0048468;cell development;0.0379760694327507!GO:0009124;nucleoside monophosphate biosynthetic process;0.0379818490180359!GO:0009123;nucleoside monophosphate metabolic process;0.0379818490180359!GO:0003756;protein disulfide isomerase activity;0.0387457608988857!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0387457608988857!GO:0008097;5S rRNA binding;0.0389189164019292!GO:0004221;ubiquitin thiolesterase activity;0.0392621239172685!GO:0008361;regulation of cell size;0.0397049528219833!GO:0051128;regulation of cellular component organization and biogenesis;0.0397106780559912!GO:0050178;phenylpyruvate tautomerase activity;0.0397106780559912!GO:0006505;GPI anchor metabolic process;0.0398879413732267!GO:0006301;postreplication repair;0.0398879413732267!GO:0031647;regulation of protein stability;0.0400032838506592!GO:0005850;eukaryotic translation initiation factor 2 complex;0.0401821032969324!GO:0016790;thiolester hydrolase activity;0.0403776417523179!GO:0009116;nucleoside metabolic process;0.0406395559319272!GO:0050662;coenzyme binding;0.0411234531258067!GO:0008415;acyltransferase activity;0.0411752956113721!GO:0006406;mRNA export from nucleus;0.0411752956113721!GO:0004300;enoyl-CoA hydratase activity;0.0414246001478986!GO:0016796;exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.0416967158503083!GO:0007264;small GTPase mediated signal transduction;0.0418919340821216!GO:0004549;tRNA-specific ribonuclease activity;0.0418919340821216!GO:0042054;histone methyltransferase activity;0.0419806601605796!GO:0001824;blastocyst development;0.0420306972538499!GO:0000086;G2/M transition of mitotic cell cycle;0.0420306972538499!GO:0000805;X chromosome;0.0421988671122691!GO:0001740;Barr body;0.0421988671122691!GO:0006278;RNA-dependent DNA replication;0.0442049977037779!GO:0030508;thiol-disulfide exchange intermediate activity;0.0447762391944828!GO:0030911;TPR domain binding;0.0457496238622457!GO:0032039;integrator complex;0.0460243326749203!GO:0016747;transferase activity, transferring groups other than amino-acyl groups;0.0463333436900311!GO:0000793;condensed chromosome;0.0463734950977644!GO:0030496;midbody;0.0472768387679158!GO:0007094;mitotic cell cycle spindle assembly checkpoint;0.0474075590755345!GO:0005732;small nucleolar ribonucleoprotein complex;0.0480923121592519!GO:0000119;mediator complex;0.0497829062987022 | |||
|sample_id=10441 | |sample_id=10441 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 100: | ||
|sample_tissue=synovium | |sample_tissue=synovium | ||
|top_motifs=NKX6-1,2:2.56829931178;TFDP1:2.18719851224;FOXQ1:2.11425972561;NKX2-1,4:2.02598149677;FOXD3:1.94954860304;VSX1,2:1.92993048244;ZNF384:1.92503934981;PITX1..3:1.73891318031;PAX4:1.70674749246;TEF:1.67073572241;GFI1:1.66123476461;MZF1:1.65348174879;NFY{A,B,C}:1.62727441557;LEF1_TCF7_TCF7L1,2:1.60898298197;IKZF2:1.59885639915;FOXP1:1.57727678688;RBPJ:1.51003080839;E2F1..5:1.47594438891;PRRX1,2:1.44272882658;GATA4:1.40305221864;BPTF:1.34862105877;AIRE:1.33733092223;POU1F1:1.28198198996;RREB1:1.22869247024;PATZ1:1.14265680027;BREu{core}:1.11336958369;NRF1:1.11016734091;LHX3,4:1.10980970712;CDX1,2,4:1.07493627579;DBP:1.05364138911;ZNF143:1.05061147942;FOXM1:1.00631337608;ZIC1..3:0.984559028876;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.979062692051;SOX{8,9,10}:0.976953708274;TOPORS:0.966220068537;ELK1,4_GABP{A,B1}:0.902555889583;NR6A1:0.886010235888;PAX8:0.866406037683;ADNP_IRX_SIX_ZHX:0.865258286908;NKX2-3_NKX2-5:0.863040448603;ONECUT1,2:0.830041454246;NKX3-2:0.799246933026;AHR_ARNT_ARNT2:0.787264854661;NR5A1,2:0.762400635775;CRX:0.761686481559;POU6F1:0.754789503412;MTE{core}:0.750310517546;MED-1{core}:0.741702059768;SOX17:0.72998543005;CUX2:0.708317807006;HOXA9_MEIS1:0.705527273367;FOX{I1,J2}:0.699992848733;PAX1,9:0.681303871107;RORA:0.632224756549;POU2F1..3:0.630537168208;HIC1:0.617659113934;PDX1:0.615364331153;PBX1:0.604920440378;SOX5:0.602020233918;KLF4:0.584869372192;HMGA1,2:0.575202499141;ATF4:0.570902934703;ARID5B:0.539772192306;OCT4_SOX2{dimer}:0.536576783298;HOX{A4,D4}:0.527928535398;ZBTB16:0.522439346411;STAT5{A,B}:0.510485066929;MYB:0.509115472192;MYBL2:0.501924308162;GTF2A1,2:0.496152488966;CDC5L:0.454153188124;EGR1..3:0.418967113941;HOX{A6,A7,B6,B7}:0.417204825246;FOXA2:0.416398679785;T:0.379263657416;EVI1:0.378978485575;HSF1,2:0.373554837991;FOXN1:0.340380866062;YY1:0.321629220843;GTF2I:0.311620449703;bHLH_family:0.308631662596;SP1:0.297777609254;RFX1:0.297230873004;HBP1_HMGB_SSRP1_UBTF:0.294216461332;GFI1B:0.281339650874;TFAP2B:0.244247635496;TEAD1:0.231047571755;EN1,2:0.219133356211;POU3F1..4:0.184851665642;PAX3,7:0.172130466688;RFX2..5_RFXANK_RFXAP:0.144850028698;HOX{A5,B5}:0.11499517455;FOXP3:0.104535625392;UFEwm:0.0652968955285;MAZ:0.0553825564145;SREBF1,2:0.0230928575;DMAP1_NCOR{1,2}_SMARC:0.00171282458261;ZBTB6:-0.012951613825;HAND1,2:-0.0306332220939;PRDM1:-0.0346735081386;SOX2:-0.0417641567684;PAX6:-0.0616867313056;ZNF238:-0.0731521227598;RXR{A,B,G}:-0.0869543185205;ATF5_CREB3:-0.094255758447;CREB1:-0.0955163702556;ALX1:-0.0991482588148;POU5F1:-0.10935643568;NKX3-1:-0.132858501246;ZFP161:-0.133731625298;HIF1A:-0.140970191378;TFAP4:-0.147142245526;ATF6:-0.156965500582;HNF1A:-0.162407775089;HNF4A_NR2F1,2:-0.182121490017;MTF1:-0.192744805411;TLX2:-0.192866952578;GATA6:-0.197350353843;NR3C1:-0.239216470059;FOX{F1,F2,J1}:-0.248728588758;XBP1:-0.259662477306;PPARG:-0.264541486127;FOXL1:-0.266331552701;NKX2-2,8:-0.281325837879;NANOG{mouse}:-0.282102982909;FOX{D1,D2}:-0.291687838086;EBF1:-0.299134582346;REST:-0.301852265512;NFIX:-0.302622124629;MEF2{A,B,C,D}:-0.321012220482;TAL1_TCF{3,4,12}:-0.340276900608;ALX4:-0.340558768587;TGIF1:-0.353244213428;TFAP2{A,C}:-0.365946009119;JUN:-0.382568778355;PAX5:-0.397480521413;RUNX1..3:-0.402366262547;ELF1,2,4:-0.415479422723;SNAI1..3:-0.432991696601;MYFfamily:-0.452676505749;FOXO1,3,4:-0.463585584707;TP53:-0.481396362839;IKZF1:-0.495157785838;AR:-0.499461432307;SPIB:-0.50359607722;SRF:-0.511124029467;ATF2:-0.512587149738;ZEB1:-0.548770843455;PAX2:-0.559188278582;XCPE1{core}:-0.577970478467;GCM1,2:-0.586719621204;SPI1:-0.597469357522;TLX1..3_NFIC{dimer}:-0.606778053147;NANOG:-0.642119335743;FOS_FOS{B,L1}_JUN{B,D}:-0.643011548523;NFKB1_REL_RELA:-0.668012506409;NR1H4:-0.679945330847;HMX1:-0.685196264423;NFATC1..3:-0.690420552556;HLF:-0.71285348441;FOSL2:-0.790604260234;BACH2:-0.797197364487;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.813785655057;NFE2:-0.833190760155;IRF7:-0.850490749963;TBP:-0.854413941834;GZF1:-0.86322206684;SMAD1..7,9:-0.879850884368;TBX4,5:-0.892328294311;STAT1,3:-0.918392779012;NHLH1,2:-0.921685690789;IRF1,2:-0.932195166521;CEBPA,B_DDIT3:-0.945712162591;NFIL3:-0.99537970283;NFE2L2:-1.00009190109;ETS1,2:-1.00302626234;NFE2L1:-1.02162457024;SPZ1:-1.02418526288;ESR1:-1.02692411659;STAT2,4,6:-1.04613239474;LMO2:-1.05349526046;ZNF423:-1.1232624933;ZNF148:-1.15638273567;HES1:-1.17167876673;EP300:-1.18941096045;TFCP2:-1.3832124261;ESRRA:-1.39150350469;GLI1..3:-1.59581601634;RXRA_VDR{dimer}:-1.76927689603;MAFB:-1.86133708821;MYOD1:-2.00167599748 | |top_motifs=NKX6-1,2:2.56829931178;TFDP1:2.18719851224;FOXQ1:2.11425972561;NKX2-1,4:2.02598149677;FOXD3:1.94954860304;VSX1,2:1.92993048244;ZNF384:1.92503934981;PITX1..3:1.73891318031;PAX4:1.70674749246;TEF:1.67073572241;GFI1:1.66123476461;MZF1:1.65348174879;NFY{A,B,C}:1.62727441557;LEF1_TCF7_TCF7L1,2:1.60898298197;IKZF2:1.59885639915;FOXP1:1.57727678688;RBPJ:1.51003080839;E2F1..5:1.47594438891;PRRX1,2:1.44272882658;GATA4:1.40305221864;BPTF:1.34862105877;AIRE:1.33733092223;POU1F1:1.28198198996;RREB1:1.22869247024;PATZ1:1.14265680027;BREu{core}:1.11336958369;NRF1:1.11016734091;LHX3,4:1.10980970712;CDX1,2,4:1.07493627579;DBP:1.05364138911;ZNF143:1.05061147942;FOXM1:1.00631337608;ZIC1..3:0.984559028876;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.979062692051;SOX{8,9,10}:0.976953708274;TOPORS:0.966220068537;ELK1,4_GABP{A,B1}:0.902555889583;NR6A1:0.886010235888;PAX8:0.866406037683;ADNP_IRX_SIX_ZHX:0.865258286908;NKX2-3_NKX2-5:0.863040448603;ONECUT1,2:0.830041454246;NKX3-2:0.799246933026;AHR_ARNT_ARNT2:0.787264854661;NR5A1,2:0.762400635775;CRX:0.761686481559;POU6F1:0.754789503412;MTE{core}:0.750310517546;MED-1{core}:0.741702059768;SOX17:0.72998543005;CUX2:0.708317807006;HOXA9_MEIS1:0.705527273367;FOX{I1,J2}:0.699992848733;PAX1,9:0.681303871107;RORA:0.632224756549;POU2F1..3:0.630537168208;HIC1:0.617659113934;PDX1:0.615364331153;PBX1:0.604920440378;SOX5:0.602020233918;KLF4:0.584869372192;HMGA1,2:0.575202499141;ATF4:0.570902934703;ARID5B:0.539772192306;OCT4_SOX2{dimer}:0.536576783298;HOX{A4,D4}:0.527928535398;ZBTB16:0.522439346411;STAT5{A,B}:0.510485066929;MYB:0.509115472192;MYBL2:0.501924308162;GTF2A1,2:0.496152488966;CDC5L:0.454153188124;EGR1..3:0.418967113941;HOX{A6,A7,B6,B7}:0.417204825246;FOXA2:0.416398679785;T:0.379263657416;EVI1:0.378978485575;HSF1,2:0.373554837991;FOXN1:0.340380866062;YY1:0.321629220843;GTF2I:0.311620449703;bHLH_family:0.308631662596;SP1:0.297777609254;RFX1:0.297230873004;HBP1_HMGB_SSRP1_UBTF:0.294216461332;GFI1B:0.281339650874;TFAP2B:0.244247635496;TEAD1:0.231047571755;EN1,2:0.219133356211;POU3F1..4:0.184851665642;PAX3,7:0.172130466688;RFX2..5_RFXANK_RFXAP:0.144850028698;HOX{A5,B5}:0.11499517455;FOXP3:0.104535625392;UFEwm:0.0652968955285;MAZ:0.0553825564145;SREBF1,2:0.0230928575;DMAP1_NCOR{1,2}_SMARC:0.00171282458261;ZBTB6:-0.012951613825;HAND1,2:-0.0306332220939;PRDM1:-0.0346735081386;SOX2:-0.0417641567684;PAX6:-0.0616867313056;ZNF238:-0.0731521227598;RXR{A,B,G}:-0.0869543185205;ATF5_CREB3:-0.094255758447;CREB1:-0.0955163702556;ALX1:-0.0991482588148;POU5F1:-0.10935643568;NKX3-1:-0.132858501246;ZFP161:-0.133731625298;HIF1A:-0.140970191378;TFAP4:-0.147142245526;ATF6:-0.156965500582;HNF1A:-0.162407775089;HNF4A_NR2F1,2:-0.182121490017;MTF1:-0.192744805411;TLX2:-0.192866952578;GATA6:-0.197350353843;NR3C1:-0.239216470059;FOX{F1,F2,J1}:-0.248728588758;XBP1:-0.259662477306;PPARG:-0.264541486127;FOXL1:-0.266331552701;NKX2-2,8:-0.281325837879;NANOG{mouse}:-0.282102982909;FOX{D1,D2}:-0.291687838086;EBF1:-0.299134582346;REST:-0.301852265512;NFIX:-0.302622124629;MEF2{A,B,C,D}:-0.321012220482;TAL1_TCF{3,4,12}:-0.340276900608;ALX4:-0.340558768587;TGIF1:-0.353244213428;TFAP2{A,C}:-0.365946009119;JUN:-0.382568778355;PAX5:-0.397480521413;RUNX1..3:-0.402366262547;ELF1,2,4:-0.415479422723;SNAI1..3:-0.432991696601;MYFfamily:-0.452676505749;FOXO1,3,4:-0.463585584707;TP53:-0.481396362839;IKZF1:-0.495157785838;AR:-0.499461432307;SPIB:-0.50359607722;SRF:-0.511124029467;ATF2:-0.512587149738;ZEB1:-0.548770843455;PAX2:-0.559188278582;XCPE1{core}:-0.577970478467;GCM1,2:-0.586719621204;SPI1:-0.597469357522;TLX1..3_NFIC{dimer}:-0.606778053147;NANOG:-0.642119335743;FOS_FOS{B,L1}_JUN{B,D}:-0.643011548523;NFKB1_REL_RELA:-0.668012506409;NR1H4:-0.679945330847;HMX1:-0.685196264423;NFATC1..3:-0.690420552556;HLF:-0.71285348441;FOSL2:-0.790604260234;BACH2:-0.797197364487;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.813785655057;NFE2:-0.833190760155;IRF7:-0.850490749963;TBP:-0.854413941834;GZF1:-0.86322206684;SMAD1..7,9:-0.879850884368;TBX4,5:-0.892328294311;STAT1,3:-0.918392779012;NHLH1,2:-0.921685690789;IRF1,2:-0.932195166521;CEBPA,B_DDIT3:-0.945712162591;NFIL3:-0.99537970283;NFE2L2:-1.00009190109;ETS1,2:-1.00302626234;NFE2L1:-1.02162457024;SPZ1:-1.02418526288;ESR1:-1.02692411659;STAT2,4,6:-1.04613239474;LMO2:-1.05349526046;ZNF423:-1.1232624933;ZNF148:-1.15638273567;HES1:-1.17167876673;EP300:-1.18941096045;TFCP2:-1.3832124261;ESRRA:-1.39150350469;GLI1..3:-1.59581601634;RXRA_VDR{dimer}:-1.76927689603;MAFB:-1.86133708821;MYOD1:-2.00167599748 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10441-106E9;search_select_hide=table117:FF:10441-106E9 | |||
}} | }} | ||
Latest revision as of 14:02, 3 June 2020
| Name: | synovial sarcoma cell line:HS-SY-II |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs11244 |
| Sample type: | cell lines |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| HumanCAGEScan Download raw sequence, BAM & CTSS | |||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11244
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11244
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.2 |
| 10 | 10 | 0.283 |
| 100 | 100 | 0.384 |
| 101 | 101 | 0.701 |
| 102 | 102 | 0.933 |
| 103 | 103 | 0.0385 |
| 104 | 104 | 0.582 |
| 105 | 105 | 0.429 |
| 106 | 106 | 0.00474 |
| 107 | 107 | 0.0878 |
| 108 | 108 | 0.356 |
| 109 | 109 | 0.0641 |
| 11 | 11 | 0.0713 |
| 110 | 110 | 0.381 |
| 111 | 111 | 0.576 |
| 112 | 112 | 0.0498 |
| 113 | 113 | 0.727 |
| 114 | 114 | 0.0267 |
| 115 | 115 | 0.731 |
| 116 | 116 | 0.912 |
| 117 | 117 | 0.348 |
| 118 | 118 | 0.308 |
| 119 | 119 | 0.122 |
| 12 | 12 | 0.474 |
| 120 | 120 | 0.7 |
| 121 | 121 | 0.666 |
| 122 | 122 | 0.364 |
| 123 | 123 | 0.85 |
| 124 | 124 | 0.835 |
| 125 | 125 | 0.625 |
| 126 | 126 | 0.795 |
| 127 | 127 | 0.0826 |
| 128 | 128 | 0.0419 |
| 129 | 129 | 0.31 |
| 13 | 13 | 0.748 |
| 130 | 130 | 0.0255 |
| 131 | 131 | 0.0739 |
| 132 | 132 | 0.591 |
| 133 | 133 | 0.649 |
| 134 | 134 | 0.924 |
| 135 | 135 | 0.137 |
| 136 | 136 | 0.976 |
| 137 | 137 | 0.0778 |
| 138 | 138 | 0.117 |
| 139 | 139 | 0.025 |
| 14 | 14 | 0.242 |
| 140 | 140 | 0.313 |
| 141 | 141 | 0.31 |
| 142 | 142 | 0.986 |
| 143 | 143 | 0.00548 |
| 144 | 144 | 0.902 |
| 145 | 145 | 0.824 |
| 146 | 146 | 0.278 |
| 147 | 147 | 0.502 |
| 148 | 148 | 0.00531 |
| 149 | 149 | 0.0991 |
| 15 | 15 | 0.181 |
| 150 | 150 | 0.702 |
| 151 | 151 | 0.218 |
| 152 | 152 | 0.0814 |
| 153 | 153 | 0.515 |
| 154 | 154 | 0.994 |
| 155 | 155 | 0.985 |
| 156 | 156 | 0.178 |
| 157 | 157 | 0.936 |
| 158 | 158 | 0.901 |
| 159 | 159 | 0.161 |
| 16 | 16 | 0.206 |
| 160 | 160 | 0.478 |
| 161 | 161 | 0.467 |
| 162 | 162 | 0.665 |
| 163 | 163 | 0.129 |
| 164 | 164 | 0.27 |
| 165 | 165 | 0.504 |
| 166 | 166 | 0.498 |
| 167 | 167 | 0.713 |
| 168 | 168 | 0.0217 |
| 169 | 169 | 0.0106 |
| 17 | 17 | 0.212 |
| 18 | 18 | 0.142 |
| 19 | 19 | 0.155 |
| 2 | 2 | 0.106 |
| 20 | 20 | 0.393 |
| 21 | 21 | 0.512 |
| 22 | 22 | 0.103 |
| 23 | 23 | 0.0379 |
| 24 | 24 | 0.8 |
| 25 | 25 | 0.425 |
| 26 | 26 | 0.437 |
| 27 | 27 | 0.0935 |
| 28 | 28 | 0.66 |
| 29 | 29 | 0.638 |
| 3 | 3 | 0.285 |
| 30 | 30 | 0.491 |
| 31 | 31 | 0.422 |
| 32 | 32 | 0.0326 |
| 33 | 33 | 0.385 |
| 34 | 34 | 0.443 |
| 35 | 35 | 0.554 |
| 36 | 36 | 0.181 |
| 37 | 37 | 0.0628 |
| 38 | 38 | 0.373 |
| 39 | 39 | 0.624 |
| 4 | 4 | 0.655 |
| 40 | 40 | 0.181 |
| 41 | 41 | 0.078 |
| 42 | 42 | 0.827 |
| 43 | 43 | 0.154 |
| 44 | 44 | 0.272 |
| 45 | 45 | 0.308 |
| 46 | 46 | 0.187 |
| 47 | 47 | 0.473 |
| 48 | 48 | 0.323 |
| 49 | 49 | 0.284 |
| 5 | 5 | 0.264 |
| 50 | 50 | 0.723 |
| 51 | 51 | 0.471 |
| 52 | 52 | 0.186 |
| 53 | 53 | 0.51 |
| 54 | 54 | 0.462 |
| 55 | 55 | 0.0493 |
| 56 | 56 | 0.407 |
| 57 | 57 | 0.756 |
| 58 | 58 | 0.285 |
| 59 | 59 | 0.0282 |
| 6 | 6 | 0.572 |
| 60 | 60 | 0.0353 |
| 61 | 61 | 0.415 |
| 62 | 62 | 0.105 |
| 63 | 63 | 0.284 |
| 64 | 64 | 0.295 |
| 65 | 65 | 0.0934 |
| 66 | 66 | 0.203 |
| 67 | 67 | 0.971 |
| 68 | 68 | 0.133 |
| 69 | 69 | 0.417 |
| 7 | 7 | 0.511 |
| 70 | 70 | 9.67851e-4 |
| 71 | 71 | 0.21 |
| 72 | 72 | 0.238 |
| 73 | 73 | 0.091 |
| 74 | 74 | 0.124 |
| 75 | 75 | 0.151 |
| 76 | 76 | 0.818 |
| 77 | 77 | 0.223 |
| 78 | 78 | 0.802 |
| 79 | 79 | 0.245 |
| 8 | 8 | 0.31 |
| 80 | 80 | 0.0344 |
| 81 | 81 | 0.538 |
| 82 | 82 | 0.0108 |
| 83 | 83 | 0.288 |
| 84 | 84 | 0.874 |
| 85 | 85 | 0.00579 |
| 86 | 86 | 0.261 |
| 87 | 87 | 0.156 |
| 88 | 88 | 0.696 |
| 89 | 89 | 0.0227 |
| 9 | 9 | 0.182 |
| 90 | 90 | 0.415 |
| 91 | 91 | 0.444 |
| 92 | 92 | 0.0276 |
| 93 | 93 | 0.324 |
| 94 | 94 | 0.182 |
| 95 | 95 | 0.36 |
| 96 | 96 | 0.132 |
| 97 | 97 | 0.792 |
| 98 | 98 | 0.179 |
| 99 | 99 | 0.704 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11244
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
CL:0000214 synovial cell
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0100400 sarcoma cell line sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000151 (secretory cell)
0002320 (connective tissue cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000213 (lining cell)
0002078 (meso-epithelial cell)
0000499 (stromal cell)
0000153 (GAG secreting cell)
0000327 (extracellular matrix secreting cell)
0000447 (carbohydrate secreting cell)
0000215 (barrier cell)
0000255 (eukaryotic cell)
0000214 (synovial cell)
DOID: Disease
4 (disease)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
1115 (sarcoma)
UBERON: Anatomy
0000468 (multi-cellular organism)
0000483 (epithelium)
0002384 (connective tissue)
0000479 (tissue)
0000064 (organ part)
0000062 (organ)
0004120 (mesoderm-derived structure)
0004457 (cavity lining)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0004923 (organ component layer)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0006914 (squamous epithelium)
0004905 (articulation)
0000486 (multilaminar epithelium)
0006915 (stratified squamous epithelium)
0007616 (layer of synovial tissue)
0000042 (serous membrane)
0000982 (skeletal joint)
0004458 (body cavity or lining)
0010317 (germ layer / neural crest derived structure)
0002217 (synovial joint)
0002018 (synovial membrane of synovial joint)
0002204 (musculoskeletal system)
0001434 (skeletal system)
0004770 (articular system)
FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100400 (sarcoma cell line sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)
CL:0000222 (mesodermal cell)
