FFCP PHASE1:Hg19::chr19:48343614..48343629,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr19:48343614..48343629,+
|short_description=p2@CRX
|description=CAGE_peak_2_at_CRX_5end
|association_with_transcript=389bp_to_AF335249_5end
|EntrezGene=1406
...") |
No edit summary |
||
(11 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=1406 | |EntrezGene=1406 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2383 | |HGNC=2383 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=389bp_to_AF335249_5end | |||
|cluster_id=chr19:48343614..48343629,+ | |||
|coexpression_cluster_id=C1736 | |||
|description=CAGE_peak_2_at_CRX_5end | |||
|id=chr19:48343614..48343629,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0000047;2.74e-15;2 | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0003056;1.23e-38;3!UBERON:0005425;2.05e-29;1 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:5409;2.18e-08;4 | |||
|ontology_enrichment_disease_v019_2=DOID:5409,2.43e-08,4 | |||
|ontology_enrichment_uberon=UBERON:0001905!8.57e-32!2;UBERON:0002757!8.57e-32!2;UBERON:0010134!8.57e-32!2;UBERON:0002784!8.57e-32!2;UBERON:0005408!8.57e-32!2;UBERON:0001899!8.57e-32!2;UBERON:0000966!3.66e-28!5;UBERON:0005388!3.66e-28!5;UBERON:0001802!3.66e-28!5;UBERON:0002104!2.12e-18!21;UBERON:0000941!6.47e-17!1;UBERON:0004904!6.47e-17!1;UBERON:0002464!6.47e-17!1;UBERON:0001021!6.47e-17!1;UBERON:0001785!6.47e-17!1;UBERON:0003296!1.93e-16!4;UBERON:0010133!1.93e-16!4;UBERON:0001032!4.12e-16!24;UBERON:0004456!4.12e-16!24;UBERON:0000970!1.20e-12!20;UBERON:0000020!4.91e-11!23;UBERON:0001894!8.35e-10!7;UBERON:0006222!8.35e-10!7;UBERON:0000073!1.69e-09!94;UBERON:0001016!1.69e-09!94;UBERON:0003714!4.02e-09!2;UBERON:0005162!4.02e-09!2;UBERON:0000122!4.02e-09!2;UBERON:0005743!4.37e-08!86;UBERON:0000019!7.11e-08!19;UBERON:0000047!7.11e-08!19;UBERON:0004088!7.11e-08!19;UBERON:0003072!7.11e-08!19;UBERON:0003071!7.11e-08!19;UBERON:0004128!7.11e-08!19;UBERON:0001456!3.57e-07!21 | |||
|ontology_enrichment_uberon_v019=UBERON:0001905;6.36e-57;2!UBERON:0002757;6.36e-57;2!UBERON:0010134;6.36e-57;2!UBERON:0005408;6.36e-57;2!UBERON:0001899;6.36e-57;2!UBERON:0000941;2.05e-29;1!UBERON:0001785;2.05e-29;1!UBERON:0002464;2.05e-29;1!UBERON:0004904;2.05e-29;1!UBERON:0001021;2.05e-29;1!UBERON:0003296;4.21e-29;4!UBERON:0010133;4.21e-29;4!UBERON:0002784;4.21e-29;4!UBERON:0001894;4.02e-17;7!UBERON:0003714;1.91e-15;2!UBERON:0005162;1.91e-15;2!UBERON:0000122;1.91e-15;2!UBERON:0002104;6.19e-13;21!UBERON:0001032;2.07e-11;24!UBERON:0004456;2.07e-11;24!UBERON:0000966;4.93e-07;5!UBERON:0005388;4.93e-07;5!UBERON:0001802;4.93e-07;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001905,6.36e-57,2;UBERON:0002757,6.36e-57,2;UBERON:0010134,6.36e-57,2;UBERON:0005408,6.36e-57,2;UBERON:0001899,6.36e-57,2;UBERON:0000941,1.33e-29,1;UBERON:0001785,1.33e-29,1;UBERON:0002464,1.33e-29,1;UBERON:0004904,1.33e-29,1;UBERON:0001021,1.33e-29,1;UBERON:0003902,1.33e-29,1;UBERON:0005425,1.33e-29,1;UBERON:0003296,4.21e-29,4;UBERON:0010133,4.21e-29,4;UBERON:0002784,4.21e-29,4;UBERON:0000966,5.35e-20,6;UBERON:0005388,5.35e-20,6;UBERON:0001802,5.35e-20,6;UBERON:0001894,4.02e-17,7;UBERON:0006222,4.02e-17,7;UBERON:0003714,1.54e-15,2;UBERON:0005162,1.54e-15,2;UBERON:0000122,1.54e-15,2;UBERON:0000970,5.82e-13,21;UBERON:0002104,5.82e-13,21;UBERON:0000020,1.97e-11,24;UBERON:0001032,1.97e-11,24;UBERON:0004456,1.97e-11,24;UBERON:0001781,1.96e-08,4;UBERON:0001016,5.13e-08,89;UBERON:0003056,8.15e-08,61 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.207322110030741,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.30139853857622,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.256450125116389,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.10148000107438,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.415045904808692,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.85538840518309,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.67850917939143,2.69026977775059,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.643288897589907,6.47855808104179,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.198950775161368,0,0,2.19881033490858,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.126698501011437,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.207322110030741,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.30139853857622,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.256450125116389,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.10148000107438,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.415045904808692,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.85538840518309,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.67850917939143,2.69026977775059,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.643288897589907,6.47855808104179,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.198950775161368,0,0,2.19881033490858,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.126698501011437,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p2@CRX | |||
}} | }} |
Latest revision as of 00:59, 19 September 2015
Short description: | p2@CRX |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_CRX_5end |
Coexpression cluster: | C1736_retinoblastoma_eye_pituitary_Wilms_pineal_small_retina |
Association with transcript: | 389bp_to_AF335249_5end |
EntrezGene: | CRX |
HGNC: | 2383 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
pineal body | 6.36e-57 | 2 |
regional part of epithalamus | 6.36e-57 | 2 |
secretory circumventricular organ | 6.36e-57 | 2 |
circumventricular organ | 6.36e-57 | 2 |
epithalamus | 6.36e-57 | 2 |
cranial nerve II | 1.33e-29 | 1 |
cranial nerve | 1.33e-29 | 1 |
nerve trunk | 1.33e-29 | 1 |
nerve connecting eye with brain | 1.33e-29 | 1 |
nerve | 1.33e-29 | 1 |
retinal neural layer | 1.33e-29 | 1 |
presumptive neural retina | 1.33e-29 | 1 |
gland of diencephalon | 4.21e-29 | 4 |
neuroendocrine gland | 4.21e-29 | 4 |
regional part of diencephalon | 4.21e-29 | 4 |
retina | 5.35e-20 | 6 |
photoreceptor array | 5.35e-20 | 6 |
posterior segment of eyeball | 5.35e-20 | 6 |
diencephalon | 4.02e-17 | 7 |
future diencephalon | 4.02e-17 | 7 |
neural tissue | 1.54e-15 | 2 |
multi cell component structure | 1.54e-15 | 2 |
neuron projection bundle | 1.54e-15 | 2 |
eye | 5.82e-13 | 21 |
visual system | 5.82e-13 | 21 |
sense organ | 1.97e-11 | 24 |
sensory system | 1.97e-11 | 24 |
entire sense organ system | 1.97e-11 | 24 |
layer of retina | 1.96e-08 | 4 |
nervous system | 5.13e-08 | 89 |
pre-chordal neural plate | 8.15e-08 | 61 |
Ontology term | p-value | n |
---|---|---|
lung small cell carcinoma | 2.43e-08 | 4 |