FFCP PHASE1:Hg19::chr19:5623083..5623158,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr19:5623083..5623158,+
|short_description=p1@SAFB
|description=CAGE_peak_1_at_SAFB_5end
|association_with_transcript=0bp_to_ENST00000433404,ENST00000454510,EN...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=6294 | |EntrezGene=6294 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10520 | |HGNC=10520 | ||
|TSSclassifier=strong | |||
|UniProt=F5GZU3,F5H0H3,F5H1L1 | |UniProt=F5GZU3,F5H0H3,F5H1L1 | ||
|association_with_transcript=0bp_to_ENST00000433404,ENST00000454510,ENST00000540206_5end | |||
|cluster_id=chr19:5623083..5623158,+ | |||
|coexpression_cluster_id=C3547 | |||
|description=CAGE_peak_1_at_SAFB_5end | |||
|id=chr19:5623083..5623158,+ | |||
|ontology_enrichment_celltype=CL:0000037!4.51e-33!172;CL:0000566!4.51e-33!172;CL:0002032!1.04e-31!165;CL:0000837!1.04e-31!165;CL:0000988!5.31e-31!182;CL:0000763!8.43e-24!112;CL:0000049!8.43e-24!112;CL:0000738!5.86e-23!140;CL:0002031!1.78e-18!124;CL:0002087!1.13e-16!119;CL:0002057!4.51e-14!42;CL:0000860!6.58e-14!45;CL:0000766!3.14e-13!76;CL:0000557!1.65e-11!71;CL:0000839!2.66e-11!70;CL:0002009!1.24e-09!65;CL:0002194!3.03e-09!63;CL:0000576!3.03e-09!63;CL:0000040!3.03e-09!63;CL:0000559!3.03e-09!63;CL:0000542!1.42e-07!53;CL:0000051!1.42e-07!53;CL:0000838!2.34e-07!52 | |||
|ontology_enrichment_celltype_v019=CL:0000860;1.56e-16;33!CL:0002057;1.56e-16;33!CL:0000473;2.55e-10;39!CL:0000234;2.55e-10;39!CL:0000576;3.08e-09;48!CL:0000763;2.04e-08;100!CL:0002087;5.59e-07;104!CL:0000766;8.76e-07;69 | |||
|ontology_enrichment_celltype_v019_2=CL:0000037,1.82e-33,168;CL:0002032,4.10e-32,161;CL:0000837,4.10e-32,161;CL:0000988,7.52e-32,177;CL:0000763,2.54e-24,108;CL:0000049,2.54e-24,108;CL:0000738,2.61e-23,136;CL:0002031,8.50e-19,120;CL:0002087,5.66e-17,115;CL:0000860,4.51e-14,42;CL:0002057,4.51e-14,42;CL:0000766,1.19e-13,72;CL:0000557,6.81e-12,67;CL:0000839,1.10e-11,66;CL:0000473,9.76e-11,48;CL:0000234,9.76e-11,48;CL:0002009,5.69e-10,61;CL:0002194,1.40e-09,59;CL:0000576,1.40e-09,59;CL:0000040,1.40e-09,59;CL:0000559,1.40e-09,59;CL:0000542,1.42e-07,53;CL:0000051,1.42e-07,53;CL:0000838,2.34e-07,52 | |||
|ontology_enrichment_development_v019=CL:0002057;7.07e-11;42!CL:0000049;2.23e-07;108 | |||
|ontology_enrichment_disease=DOID:1240!6.71e-10!39;DOID:2531!6.75e-10!51;DOID:0060083!6.75e-10!51;DOID:8692!3.21e-09!31 | |||
|ontology_enrichment_disease_v019=DOID:8692;4.66e-09;31!DOID:1240;4.70e-08;39 | |||
|ontology_enrichment_disease_v019_2=DOID:1240,6.71e-10,39;DOID:2531,6.75e-10,51;DOID:0060083,6.75e-10,51;DOID:8692,3.21e-09,31 | |||
|ontology_enrichment_uberon=UBERON:0007023!9.70e-12!115;UBERON:0002390!1.44e-11!102;UBERON:0003061!1.44e-11!102;UBERON:0001049!1.17e-10!57;UBERON:0005068!1.17e-10!57;UBERON:0006241!1.17e-10!57;UBERON:0007135!1.17e-10!57;UBERON:0000073!1.11e-09!94;UBERON:0001016!1.11e-09!94;UBERON:0001017!1.53e-09!82;UBERON:0002193!1.66e-09!112;UBERON:0001474!3.55e-09!86;UBERON:0002346!7.12e-09!90;UBERON:0002371!7.72e-09!80;UBERON:0005743!8.63e-09!86;UBERON:0002780!1.60e-08!41;UBERON:0001890!1.60e-08!41;UBERON:0006240!1.60e-08!41;UBERON:0003080!1.90e-08!42;UBERON:0000955!1.90e-08!69;UBERON:0006238!1.90e-08!69;UBERON:0003075!3.03e-08!86;UBERON:0007284!3.03e-08!86;UBERON:0002616!1.27e-07!59;UBERON:0001893!6.99e-07!34;UBERON:0002020!7.30e-07!34;UBERON:0003528!7.30e-07!34 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,8.54e-12,98;UBERON:0003061,8.54e-12,98;UBERON:0007023,1.39e-11,114;UBERON:0001049,1.01e-10,56;UBERON:0005068,1.01e-10,56;UBERON:0006241,1.01e-10,56;UBERON:0007135,1.01e-10,56;UBERON:0001016,1.86e-10,89;UBERON:0000073,5.07e-10,53;UBERON:0002616,5.07e-10,53;UBERON:0002193,1.19e-09,108;UBERON:0001017,1.46e-09,81;UBERON:0001474,2.18e-09,82;UBERON:0002371,4.63e-09,76;UBERON:0002346,7.69e-09,86;UBERON:0002780,1.60e-08,41;UBERON:0001890,1.60e-08,41;UBERON:0003080,1.60e-08,41;UBERON:0006240,1.60e-08,41;UBERON:0000955,1.79e-08,68;UBERON:0006238,1.79e-08,68;UBERON:0002405,2.98e-08,93;UBERON:0003075,3.30e-08,82;UBERON:0007284,3.30e-08,82;UBERON:0001893,6.99e-07,34;UBERON:0003528,7.30e-07,34;UBERON:0002020,7.30e-07,34 | |||
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| ||
|short_description=p1@SAFB | |||
}} | }} |
Latest revision as of 03:22, 20 September 2015
Short description: | p1@SAFB |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_SAFB_5end |
Coexpression cluster: | C3547_granulocyte_acute_Eosinophils_salivary_hepatoblastoma_cerebellum_tridermal |
Association with transcript: | 0bp_to_ENST00000433404, ENST00000454510, ENST00000540206_5end |
EntrezGene: | SAFB |
HGNC: | 10520 |
UniProt: | F5GZU3F5H0H3F5H1L1 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic stem cell | 1.82e-33 | 168 |
hematopoietic oligopotent progenitor cell | 4.10e-32 | 161 |
hematopoietic multipotent progenitor cell | 4.10e-32 | 161 |
hematopoietic cell | 7.52e-32 | 177 |
myeloid cell | 2.54e-24 | 108 |
common myeloid progenitor | 2.54e-24 | 108 |
leukocyte | 2.61e-23 | 136 |
hematopoietic lineage restricted progenitor cell | 8.50e-19 | 120 |
nongranular leukocyte | 5.66e-17 | 115 |
classical monocyte | 4.51e-14 | 42 |
CD14-positive, CD16-negative classical monocyte | 4.51e-14 | 42 |
myeloid leukocyte | 1.19e-13 | 72 |
granulocyte monocyte progenitor cell | 6.81e-12 | 67 |
myeloid lineage restricted progenitor cell | 1.10e-11 | 66 |
defensive cell | 9.76e-11 | 48 |
phagocyte | 9.76e-11 | 48 |
macrophage dendritic cell progenitor | 5.69e-10 | 61 |
monopoietic cell | 1.40e-09 | 59 |
monocyte | 1.40e-09 | 59 |
monoblast | 1.40e-09 | 59 |
promonocyte | 1.40e-09 | 59 |
lymphocyte | 1.42e-07 | 53 |
common lymphoid progenitor | 1.42e-07 | 53 |
lymphoid lineage restricted progenitor cell | 2.34e-07 | 52 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 8.54e-12 | 98 |
blood island | 8.54e-12 | 98 |
adult organism | 1.39e-11 | 114 |
neural tube | 1.01e-10 | 56 |
neural rod | 1.01e-10 | 56 |
future spinal cord | 1.01e-10 | 56 |
neural keel | 1.01e-10 | 56 |
nervous system | 1.86e-10 | 89 |
regional part of nervous system | 5.07e-10 | 53 |
regional part of brain | 5.07e-10 | 53 |
hemolymphoid system | 1.19e-09 | 108 |
central nervous system | 1.46e-09 | 81 |
bone element | 2.18e-09 | 82 |
bone marrow | 4.63e-09 | 76 |
neurectoderm | 7.69e-09 | 86 |
regional part of forebrain | 1.60e-08 | 41 |
forebrain | 1.60e-08 | 41 |
anterior neural tube | 1.60e-08 | 41 |
future forebrain | 1.60e-08 | 41 |
brain | 1.79e-08 | 68 |
future brain | 1.79e-08 | 68 |
immune system | 2.98e-08 | 93 |
neural plate | 3.30e-08 | 82 |
presumptive neural plate | 3.30e-08 | 82 |
telencephalon | 6.99e-07 | 34 |
brain grey matter | 7.30e-07 | 34 |
gray matter | 7.30e-07 | 34 |
Ontology term | p-value | n |
---|---|---|
leukemia | 6.71e-10 | 39 |
hematologic cancer | 6.75e-10 | 51 |
immune system cancer | 6.75e-10 | 51 |
myeloid leukemia | 3.21e-09 | 31 |