FF:11319-117D5: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON:0000468 | |DRA_sample_Accession=CAGE@SAMD00005857 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003 | |DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005857 | ||
|accession_numbers=CAGE;DRX008275;DRR009147;DRZ000572;DRZ001957;DRZ011922;DRZ013307 | |||
|accession_numbers_RNASeq=sRNA-Seq;DRX037044;DRR041410;DRZ007052 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002384,UBERON:0000033,UBERON:0000479,UBERON:0001007,UBERON:0004121,UBERON:0004119,UBERON:0010314,UBERON:0011216,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0001444,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000075,UBERON:0010317,UBERON:0001555,UBERON:0001758,UBERON:0000153,UBERON:0007811,UBERON:0002204,UBERON:0001434,UBERON:0000165,UBERON:0003672,UBERON:0011137,UBERON:0010323,UBERON:0003129 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000255,CL:0000057,CL:0002556 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000057,FF:0000001,FF:0000067 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|datafreeze_phase= | |data_phase=2 | ||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr6:34204921..34204939,+!p3@HMGA1!2.02!2932.78!HMGA1;;chr1:170632285..170632309,+!p1@PRRX1!1.87!82.70!PRRX1;;chr12:66218255..66218304,+!p3@HMGA2!1.83!170.41!HMGA2;;chr1:170633348..170633399,+!p2@PRRX1!1.76!75.82!PRRX1;;chr14:37131058..37131139,+!p1@PAX9!1.74!53.43!PAX9;;chr14:61116183..61116208,-!p1@SIX1!1.73!192.18!SIX1;;chr16:86544113..86544145,+!p1@FOXF1!1.68!57.18!FOXF1;;chr4:174451370..174451387,-!p1@HAND2!1.67!45.42!HAND2;;chr6:1389789..1389821,+!p1@FOXF2!1.60!52.30!FOXF2;;chr12:66218212..66218244,+!p5@HMGA2!1.57!52.05!HMGA2;;chr12:66218598..66218645,+!p2@HMGA2!1.55!154.65!HMGA2;;chr15:57511609..57511651,+!p2@TCF12!1.51!51.55!TCF12;;chr12:66218183..66218209,+!p4@HMGA2!1.50!57.55!HMGA2;;chr7:19157248..19157268,-!p1@TWIST1!1.46!74.95!TWIST1;;chr4:4861385..4861398,+!p1@MSX1!1.40!70.44!MSX1;;chr20:55204351..55204377,+!p1@TFAP2C!1.34!26.65!TFAP2C;;chr16:86600426..86600441,+!p1@FOXC2!1.32!48.92!FOXC2;;chr2:200322654..200322707,-!p2@SATB2!1.32!29.03!SATB2;;chr1:170633262..170633285,+!p3@PRRX1!1.29!20.89!PRRX1;;chr2:223163706..223163730,-!p1@PAX3!1.26!17.27!PAX3;;chr17:59477233..59477263,+!p1@TBX2!1.24!49.67!TBX2;;chr12:115122318..115122331,-!p2@TBX3!1.24!16.52!TBX3;;chr2:239756671..239756732,+!p1@TWIST2!1.23!50.42!TWIST2;;chr2:45236540..45236577,-!p1@SIX2!1.21!15.26!SIX2;;chr14:37126765..37126799,+!p2@PAX9!1.20!15.01!PAX9;;chr11:65667884..65667895,-!p2@FOSL1!1.17!53.68!FOSL1;;chr10:28034739..28034756,-!p1@MKX!1.16!13.51!MKX;;chr9:96717629..96717644,-!p1@BARX1!1.15!13.26!BARX1;;chr2:102091566..102091581,-!p1@RFX8!1.15!13.14!RFX8;;chr12:66218573..66218596,+!p7@HMGA2!1.08!16.39!HMGA2;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!1.07!11.51!GLIS1;;chr19:46801639..46801699,+!p1@HIF3A!1.07!10.64!HIF3A;;chr1:170632250..170632277,+!p7@PRRX1!1.06!10.51!PRRX1;;chr2:5832508..5832524,+!p1@SOX11!1.06!10.51!SOX11;;chr20:42543441..42543497,+!p1@TOX2!1.05!46.17!TOX2;;chr1:170632477..170632506,+!p6@PRRX1!1.05!10.13!PRRX1;;chr9:132427883..132427951,+!p2@PRRX2!1.05!10.13!PRRX2;;chr9:132427972..132428056,+!p1@PRRX2!1.04!13.26!PRRX2;;chr6:10412600..10412637,-!p1@TFAP2A!1.02!16.14!TFAP2A;;chr12:85673977..85674015,+!p1@ALX1!1.01!9.13!ALX1;;chr15:83953397..83953425,-!p1@BNC1!1.00!10.26!BNC1;;chr6:1389824..1389840,+!p3@FOXF2!1.00!9.01!FOXF2;;chr2:239756739..239756755,+!p2@TWIST2!0.99!15.14!TWIST2;;chr12:66218378..66218401,+!p6@HMGA2!0.98!13.39!HMGA2;;chr14:61116168..61116180,-!p2@SIX1!0.98!9.76!SIX1;;chr12:66218420..66218439,+!p12@HMGA2!0.98!8.51!HMGA2;;chr2:19558373..19558392,-!p1@OSR1!0.97!23.15!OSR1;;chr12:66218443..66218461,+!p8@HMGA2!0.97!10.89!HMGA2;;chr11:46299539..46299620,+!p2@CREB3L1!0.95!13.64!CREB3L1;;chr17:41622765..41622821,-!p2@ETV4!0.95!12.14!ETV4;;chr12:115122303..115122314,-!p6@TBX3!0.95!8.01!TBX3;;chr1:170632439..170632465,+!p11@PRRX1!0.95!7.88!PRRX1;;chr12:66218152..66218174,+!p10@HMGA2!0.94!8.38!HMGA2;;chr7:14029283..14029311,-!p1@ETV1!0.93!41.29!ETV1;;chr11:65686732..65686756,+!p2@DRAP1!0.92!32.28!DRAP1;;chr6:10415276..10415341,-!p2@TFAP2A!0.92!9.13!TFAP2A;;chr4:174450089..174450153,-!p2@HAND2!0.92!7.26!HAND2;;chr4:299227..299272,-!p1@ZNF732!0.91!7.13!ZNF732;;chr11:46299199..46299233,+!p1@CREB3L1!0.90!37.16!CREB3L1;;chr11:65667846..65667868,-!p1@FOSL1!0.89!188.30!FOSL1;;chr5:321810..321877,+!p1@AHRR!0.89!22.40!AHRR;;chr17:59477197..59477212,+!p2@TBX2!0.89!11.89!TBX2;;chr17:41623009..41623053,-!p4@ETV4!0.89!11.26!ETV4;;chr8:60031682..60031710,-!p2@TOX!0.89!11.14!TOX;;chr20:42543506..42543549,+!p2@TOX2!0.88!16.52!TOX2;;chr2:200323414..200323455,-!p1@SATB2!0.88!14.76!SATB2;;chr12:2986206..2986258,-!p2@FOXM1!0.87!41.16!FOXM1;;chr11:65686802..65686818,+!p6@DRAP1!0.86!11.14!DRAP1;;chr6:45296048..45296082,+!p1@RUNX2!0.86!7.26!RUNX2;;chr1:170632137..170632172,+!p10@PRRX1!0.86!6.26!PRRX1;;chr12:2986275..2986363,-!p1@FOXM1!0.85!65.44!FOXM1;;chr5:176738887..176738934,-!p1@MXD3!0.84!41.91!MXD3;;chr17:41623692..41623715,-!p1@ETV4!0.84!27.15!ETV4;;chr1:170632310..170632321,+!p15@PRRX1!0.84!5.88!PRRX1;;chr1:170632723..170632739,+!p8@PRRX1!0.84!5.88!PRRX1;;chr17:41277372..41277418,-!p1@BRCA1!0.83!22.40!BRCA1;;chr4:26322267..26322334,+!p3@RBPJ!0.83!14.51!RBPJ;;chr17:59477275..59477286,+!p3@TBX2!0.83!7.88!TBX2;;chr14:37126814..37126834,+!p4@PAX9!0.83!5.76!PAX9;;chr6:34204973..34204990,+!p4@HMGA1!0.82!80.08!HMGA1;;chr1:170632115..170632136,+!p9@PRRX1!0.82!5.63!PRRX1;;chr5:134369905..134369972,-!p1@PITX1!0.81!8.63!PITX1;;chr9:77112244..77112262,+!p1@RORB!0.81!6.13!RORB;;chr6:34204672..34204692,+!p1@HMGA1!0.80!643.99!HMGA1;;chr8:60031619..60031676,-!p1@TOX!0.80!12.14!TOX;;chr7:96654133..96654150,-!p1@DLX5!0.80!5.38!DLX5;;chr8:93074803..93074845,-!p1@RUNX1T1!0.80!5.38!RUNX1T1;;chr4:174451350..174451363,-!p3@HAND2!0.80!5.38!HAND2;;chr7:19157043..19157088,-!p2@TWIST1!0.79!13.89!TWIST1;;chr16:86600870..86600921,+!p2@FOXC2!0.79!5.13!FOXC2;;chr12:66218836..66218888,+!p1@HMGA2!0.78!51.42!HMGA2;;chr15:57511589..57511608,+!p4@TCF12!0.78!5.00!TCF12;;chr7:44143925..44143970,+!p1@AEBP1!0.77!120.24!AEBP1;;chr12:115121962..115121987,-!p1@TBX3!0.77!44.92!TBX3;;chr6:45390025..45390076,+!p2@RUNX2!0.76!12.14!RUNX2;;chr8:93074848..93074871,-!p3@RUNX1T1!0.76!4.75!RUNX1T1;;chr7:14029312..14029325,-!p4@ETV1!0.75!5.88!ETV1;;chr12:85673868..85673881,+!p2@ALX1!0.75!4.63!ALX1;;chr2:105470562..105470582,+!p@chr2:105470562..105470582,+!0.75!4.63!POU3F3;;chr2:121493425..121493474,+!p1@GLI2!0.74!10.51!GLI2;;chr17:17726907..17726958,-!p2@SREBF1!0.73!30.15!SREBF1;;chr9:102584262..102584276,+!p1@NR4A3!0.73!10.51!NR4A3;;chr17:41622731..41622764,-!p5@ETV4!0.73!4.38!ETV4;;chr2:95963052..95963106,+!p1@KCNIP3!0.73!4.38!KCNIP3;;chr5:158526917..158526932,-!p1@EBF1!0.72!11.51!EBF1;;chr12:66218003..66218018,+!p9@HMGA2!0.72!5.38!HMGA2;;chr6:31126291..31126399,+!p1@TCF19!0.71!44.29!TCF19;;chr3:12329358..12329393,+!p3@PPARG!0.71!11.01!PPARG;;chr1:170632959..170632987,+!p4@PRRX1!0.71!4.63!PRRX1;;chr12:66358080..66358094,+!p15@HMGA2!0.71!4.13!HMGA2;;chr5:72744594..72744609,-!p1@FOXD1!0.70!20.64!FOXD1;;chr18:22932080..22932170,-!p1@ZNF521!0.70!19.14!ZNF521;;chr8:60031809..60031835,-!p4@TOX!0.70!5.25!TOX;;chr18:52969844..52969895,-!p27@TCF4!0.70!4.00!TCF4;;chr2:172949484..172949522,+!p1@DLX1!0.70!4.00!DLX1;;chr9:102584159..102584174,+!p2@NR4A3!0.69!7.51!NR4A3;;chr12:85674018..85674039,+!p3@ALX1!0.69!3.88!ALX1;;chr12:115121770..115121781,-!p4@TBX3!0.67!3.63!TBX3;;chr5:134369879..134369898,-!p2@PITX1!0.67!3.63!PITX1;;chr20:42295713..42295738,+!p2@MYBL2!0.66!24.52!MYBL2;;chrX:66763856..66763896,+!p1@AR!0.66!5.51!AR;;chr8:67525473..67525518,-!p1@MYBL1!0.65!8.76!MYBL1;;chr9:16870710..16870763,-!p1@BNC2!0.65!6.51!BNC2;;chrX:66763815..66763854,+!p2@AR!0.65!4.75!AR;;chr12:115122005..115122016,-!p3@TBX3!0.65!4.25!TBX3;;chr12:115122262..115122271,-!p7@TBX3!0.65!3.50!TBX3;;chr12:66357214..66357233,+!p13@HMGA2!0.65!3.50!HMGA2;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!0.65!3.50!PEG3;;chr1:170632762..170632786,+!p13@PRRX1!0.65!3.50!PRRX1;;chr2:102091144..102091183,-!p2@RFX8!0.65!3.50!RFX8;;chr2:45236579..45236596,-!p2@SIX2!0.65!3.50!SIX2;;chr2:96012397..96012417,+!p3@KCNIP3!0.65!3.50!KCNIP3;;chr12:96588143..96588185,+!p1@ELK3!0.64!48.30!ELK3;;chr11:113930291..113930339,+!p2@ZBTB16!0.64!6.01!ZBTB16;;chr7:14028488..14028516,-!p2@ETV1!0.64!3.75!ETV1;;chr8:25902876..25902936,-!p1@EBF2!0.64!3.38!EBF2;;chr12:66218469..66218477,+!p16@HMGA2!0.64!3.38!HMGA2;;chr1:47779762..47779827,-!p1@STIL,p1@TAL1!0.63!17.14!TAL1;;chr4:26322419..26322479,+!p2@RBPJ!0.62!46.04!RBPJ;;chr6:85474299..85474324,-!p1@TBX18!0.62!6.26!TBX18;;chr1:170633245..170633256,+!p14@PRRX1!0.62!3.13!PRRX1;;chr14:55493763..55493824,-!p1@WDHD1!0.61!27.40!WDHD1;;chr20:31350184..31350200,+!p1@DNMT3B!0.61!7.26!DNMT3B;;chr19:13134772..13134822,+!p2@NFIX!0.61!4.88!NFIX;;chr17:41622925..41622976,-!p3@ETV4!0.60!4.88!ETV4;;chr16:86600458..86600461,+!p3@FOXC2!0.60!3.00!FOXC2;;chr16:86612320..86612394,+!p1@FOXL1!0.60!3.00!FOXL1;;chr8:60031840..60031869,-!p5@TOX!0.60!3.00!TOX;;chr20:55205825..55205847,+!p2@TFAP2C!0.60!3.00!TFAP2C;;chr11:44331576..44331650,-!p1@ALX4!0.60!3.00!ALX4;;chr7:42276787..42276815,-!p1@GLI3!0.59!8.88!GLI3;;chr1:75600067..75600094,+!p2@LHX8!0.59!2.88!LHX8;;chr8:49833978..49833996,-!p1@SNAI2!0.58!70.44!SNAI2;;chr8:77593474..77593612,+!p1@ZFHX4!0.58!14.01!ZFHX4;;chr8:60031762..60031803,-!p3@TOX!0.58!4.38!TOX;;chr6:20402102..20402152,+!p1@E2F3!0.57!13.26!E2F3;;chr5:150284532..150284549,-!p1@ZNF300!0.57!6.51!ZNF300;;chr1:247171347..247171366,-!p2@ZNF695!0.57!5.63!ZNF695;;chr1:110613276..110613299,-!p2@ALX3!0.57!2.75!ALX3;;chr1:75602043..75602093,+!p1@LHX8!0.57!2.75!LHX8;;chr18:52969674..52969685,-!p24@TCF4!0.57!2.75!TCF4;;chr8:116673894..116673913,-!p12@TRPS1!0.57!2.75!TRPS1;;chr7:42276822..42276895,-!p2@GLI3!0.56!9.38!GLI3;;chr1:61547894..61547968,+!p2@NFIA!0.56!9.01!NFIA;;chr3:157823517..157823562,-!p1@SHOX2!0.56!2.88!SHOX2;;chr2:5832493..5832507,+!p2@SOX11!0.56!2.63!SOX11;;chr19:57352109..57352153,-!p2@ZIM2!0.56!2.63!ZIM2;;chr20:42602000..42602034,+!p5@TOX2!0.56!2.63!TOX2;;chr6:1389871..1389876,+!p4@FOXF2!0.56!2.63!FOXF2;;chr7:96654026..96654061,-!p2@DLX5!0.56!2.63!DLX5;;chr8:60031934..60031986,-!p6@TOX!0.56!2.63!TOX;;chr4:1873100..1873152,+!p1@WHSC1!0.55!24.15!WHSC1;;chr21:47063625..47063658,+!p1@PCBP3!0.55!13.76!PCBP3;;chr7:44143978..44143989,+!p2@AEBP1!0.55!5.25!AEBP1;;chr6:45390002..45390023,+!p6@RUNX2!0.55!4.88!RUNX2;;chr3:141121847..141121868,+!p5@ZBTB38!0.55!4.25!ZBTB38;;chr19:10305581..10305646,-!p1@DNMT1!0.54!109.60!DNMT1;;chr6:35464817..35464894,-!p1@TEAD3!0.54!47.92!TEAD3;;chr19:23433144..23433204,-!p1@ZNF724P!0.54!13.51!ZNF724P;;chr5:178368186..178368238,+!p1@ZNF454!0.54!5.00!ZNF454;;chr5:72744445..72744466,-!p2@FOXD1!0.54!4.63!FOXD1;;chr17:41622834..41622883,-!p6@ETV4!0.54!3.13!ETV4;;chr1:170632051..170632081,+!p16@PRRX1!0.54!2.50!PRRX1;;chr1:170632647..170632659,+!p17@PRRX1!0.54!2.50!PRRX1;;chr1:170633058..170633084,+!p5@PRRX1!0.54!2.50!PRRX1;;chr2:172950227..172950249,+!p2@DLX1!0.54!2.50!DLX1;;chr19:3366570..3366619,+!p1@NFIC!0.53!98.09!NFIC;;chr7:148581360..148581425,-!p1@EZ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| |expression_enrichment_score=chr6:34204921..34204939,+!p3@HMGA1!2.02!2932.78!HMGA1;;chr1:170632285..170632309,+!p1@PRRX1!1.87!82.70!PRRX1;;chr12:66218255..66218304,+!p3@HMGA2!1.83!170.41!HMGA2;;chr1:170633348..170633399,+!p2@PRRX1!1.76!75.82!PRRX1;;chr14:37131058..37131139,+!p1@PAX9!1.74!53.43!PAX9;;chr14:61116183..61116208,-!p1@SIX1!1.73!192.18!SIX1;;chr16:86544113..86544145,+!p1@FOXF1!1.68!57.18!FOXF1;;chr4:174451370..174451387,-!p1@HAND2!1.67!45.42!HAND2;;chr6:1389789..1389821,+!p1@FOXF2!1.60!52.30!FOXF2;;chr12:66218212..66218244,+!p5@HMGA2!1.57!52.05!HMGA2;;chr12:66218598..66218645,+!p2@HMGA2!1.55!154.65!HMGA2;;chr15:57511609..57511651,+!p2@TCF12!1.51!51.55!TCF12;;chr12:66218183..66218209,+!p4@HMGA2!1.50!57.55!HMGA2;;chr7:19157248..19157268,-!p1@TWIST1!1.46!74.95!TWIST1;;chr4:4861385..4861398,+!p1@MSX1!1.40!70.44!MSX1;;chr20:55204351..55204377,+!p1@TFAP2C!1.34!26.65!TFAP2C;;chr16:86600426..86600441,+!p1@FOXC2!1.32!48.92!FOXC2;;chr2:200322654..200322707,-!p2@SATB2!1.32!29.03!SATB2;;chr1:170633262..170633285,+!p3@PRRX1!1.29!20.89!PRRX1;;chr2:223163706..223163730,-!p1@PAX3!1.26!17.27!PAX3;;chr17:59477233..59477263,+!p1@TBX2!1.24!49.67!TBX2;;chr12:115122318..115122331,-!p2@TBX3!1.24!16.52!TBX3;;chr2:239756671..239756732,+!p1@TWIST2!1.23!50.42!TWIST2;;chr2:45236540..45236577,-!p1@SIX2!1.21!15.26!SIX2;;chr14:37126765..37126799,+!p2@PAX9!1.20!15.01!PAX9;;chr11:65667884..65667895,-!p2@FOSL1!1.17!53.68!FOSL1;;chr10:28034739..28034756,-!p1@MKX!1.16!13.51!MKX;;chr9:96717629..96717644,-!p1@BARX1!1.15!13.26!BARX1;;chr2:102091566..102091581,-!p1@RFX8!1.15!13.14!RFX8;;chr12:66218573..66218596,+!p7@HMGA2!1.08!16.39!HMGA2;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!1.07!11.51!GLIS1;;chr19:46801639..46801699,+!p1@HIF3A!1.07!10.64!HIF3A;;chr1:170632250..170632277,+!p7@PRRX1!1.06!10.51!PRRX1;;chr2:5832508..5832524,+!p1@SOX11!1.06!10.51!SOX11;;chr20:42543441..42543497,+!p1@TOX2!1.05!46.17!TOX2;;chr1:170632477..170632506,+!p6@PRRX1!1.05!10.13!PRRX1;;chr9:132427883..132427951,+!p2@PRRX2!1.05!10.13!PRRX2;;chr9:132427972..132428056,+!p1@PRRX2!1.04!13.26!PRRX2;;chr6:10412600..10412637,-!p1@TFAP2A!1.02!16.14!TFAP2A;;chr12:85673977..85674015,+!p1@ALX1!1.01!9.13!ALX1;;chr15:83953397..83953425,-!p1@BNC1!1.00!10.26!BNC1;;chr6:1389824..1389840,+!p3@FOXF2!1.00!9.01!FOXF2;;chr2:239756739..239756755,+!p2@TWIST2!0.99!15.14!TWIST2;;chr12:66218378..66218401,+!p6@HMGA2!0.98!13.39!HMGA2;;chr14:61116168..61116180,-!p2@SIX1!0.98!9.76!SIX1;;chr12:66218420..66218439,+!p12@HMGA2!0.98!8.51!HMGA2;;chr2:19558373..19558392,-!p1@OSR1!0.97!23.15!OSR1;;chr12:66218443..66218461,+!p8@HMGA2!0.97!10.89!HMGA2;;chr11:46299539..46299620,+!p2@CREB3L1!0.95!13.64!CREB3L1;;chr17:41622765..41622821,-!p2@ETV4!0.95!12.14!ETV4;;chr12:115122303..115122314,-!p6@TBX3!0.95!8.01!TBX3;;chr1:170632439..170632465,+!p11@PRRX1!0.95!7.88!PRRX1;;chr12:66218152..66218174,+!p10@HMGA2!0.94!8.38!HMGA2;;chr7:14029283..14029311,-!p1@ETV1!0.93!41.29!ETV1;;chr11:65686732..65686756,+!p2@DRAP1!0.92!32.28!DRAP1;;chr6:10415276..10415341,-!p2@TFAP2A!0.92!9.13!TFAP2A;;chr4:174450089..174450153,-!p2@HAND2!0.92!7.26!HAND2;;chr4:299227..299272,-!p1@ZNF732!0.91!7.13!ZNF732;;chr11:46299199..46299233,+!p1@CREB3L1!0.90!37.16!CREB3L1;;chr11:65667846..65667868,-!p1@FOSL1!0.89!188.30!FOSL1;;chr5:321810..321877,+!p1@AHRR!0.89!22.40!AHRR;;chr17:59477197..59477212,+!p2@TBX2!0.89!11.89!TBX2;;chr17:41623009..41623053,-!p4@ETV4!0.89!11.26!ETV4;;chr8:60031682..60031710,-!p2@TOX!0.89!11.14!TOX;;chr20:42543506..42543549,+!p2@TOX2!0.88!16.52!TOX2;;chr2:200323414..200323455,-!p1@SATB2!0.88!14.76!SATB2;;chr12:2986206..2986258,-!p2@FOXM1!0.87!41.16!FOXM1;;chr11:65686802..65686818,+!p6@DRAP1!0.86!11.14!DRAP1;;chr6:45296048..45296082,+!p1@RUNX2!0.86!7.26!RUNX2;;chr1:170632137..170632172,+!p10@PRRX1!0.86!6.26!PRRX1;;chr12:2986275..2986363,-!p1@FOXM1!0.85!65.44!FOXM1;;chr5:176738887..176738934,-!p1@MXD3!0.84!41.91!MXD3;;chr17:41623692..41623715,-!p1@ETV4!0.84!27.15!ETV4;;chr1:170632310..170632321,+!p15@PRRX1!0.84!5.88!PRRX1;;chr1:170632723..170632739,+!p8@PRRX1!0.84!5.88!PRRX1;;chr17:41277372..41277418,-!p1@BRCA1!0.83!22.40!BRCA1;;chr4:26322267..26322334,+!p3@RBPJ!0.83!14.51!RBPJ;;chr17:59477275..59477286,+!p3@TBX2!0.83!7.88!TBX2;;chr14:37126814..37126834,+!p4@PAX9!0.83!5.76!PAX9;;chr6:34204973..34204990,+!p4@HMGA1!0.82!80.08!HMGA1;;chr1:170632115..170632136,+!p9@PRRX1!0.82!5.63!PRRX1;;chr5:134369905..134369972,-!p1@PITX1!0.81!8.63!PITX1;;chr9:77112244..77112262,+!p1@RORB!0.81!6.13!RORB;;chr6:34204672..34204692,+!p1@HMGA1!0.80!643.99!HMGA1;;chr8:60031619..60031676,-!p1@TOX!0.80!12.14!TOX;;chr7:96654133..96654150,-!p1@DLX5!0.80!5.38!DLX5;;chr8:93074803..93074845,-!p1@RUNX1T1!0.80!5.38!RUNX1T1;;chr4:174451350..174451363,-!p3@HAND2!0.80!5.38!HAND2;;chr7:19157043..19157088,-!p2@TWIST1!0.79!13.89!TWIST1;;chr16:86600870..86600921,+!p2@FOXC2!0.79!5.13!FOXC2;;chr12:66218836..66218888,+!p1@HMGA2!0.78!51.42!HMGA2;;chr15:57511589..57511608,+!p4@TCF12!0.78!5.00!TCF12;;chr7:44143925..44143970,+!p1@AEBP1!0.77!120.24!AEBP1;;chr12:115121962..115121987,-!p1@TBX3!0.77!44.92!TBX3;;chr6:45390025..45390076,+!p2@RUNX2!0.76!12.14!RUNX2;;chr8:93074848..93074871,-!p3@RUNX1T1!0.76!4.75!RUNX1T1;;chr7:14029312..14029325,-!p4@ETV1!0.75!5.88!ETV1;;chr12:85673868..85673881,+!p2@ALX1!0.75!4.63!ALX1;;chr2:105470562..105470582,+!p@chr2:105470562..105470582,+!0.75!4.63!POU3F3;;chr2:121493425..121493474,+!p1@GLI2!0.74!10.51!GLI2;;chr17:17726907..17726958,-!p2@SREBF1!0.73!30.15!SREBF1;;chr9:102584262..102584276,+!p1@NR4A3!0.73!10.51!NR4A3;;chr17:41622731..41622764,-!p5@ETV4!0.73!4.38!ETV4;;chr2:95963052..95963106,+!p1@KCNIP3!0.73!4.38!KCNIP3;;chr5:158526917..158526932,-!p1@EBF1!0.72!11.51!EBF1;;chr12:66218003..66218018,+!p9@HMGA2!0.72!5.38!HMGA2;;chr6:31126291..31126399,+!p1@TCF19!0.71!44.29!TCF19;;chr3:12329358..12329393,+!p3@PPARG!0.71!11.01!PPARG;;chr1:170632959..170632987,+!p4@PRRX1!0.71!4.63!PRRX1;;chr12:66358080..66358094,+!p15@HMGA2!0.71!4.13!HMGA2;;chr5:72744594..72744609,-!p1@FOXD1!0.70!20.64!FOXD1;;chr18:22932080..22932170,-!p1@ZNF521!0.70!19.14!ZNF521;;chr8:60031809..60031835,-!p4@TOX!0.70!5.25!TOX;;chr18:52969844..52969895,-!p27@TCF4!0.70!4.00!TCF4;;chr2:172949484..172949522,+!p1@DLX1!0.70!4.00!DLX1;;chr9:102584159..102584174,+!p2@NR4A3!0.69!7.51!NR4A3;;chr12:85674018..85674039,+!p3@ALX1!0.69!3.88!ALX1;;chr12:115121770..115121781,-!p4@TBX3!0.67!3.63!TBX3;;chr5:134369879..134369898,-!p2@PITX1!0.67!3.63!PITX1;;chr20:42295713..42295738,+!p2@MYBL2!0.66!24.52!MYBL2;;chrX:66763856..66763896,+!p1@AR!0.66!5.51!AR;;chr8:67525473..67525518,-!p1@MYBL1!0.65!8.76!MYBL1;;chr9:16870710..16870763,-!p1@BNC2!0.65!6.51!BNC2;;chrX:66763815..66763854,+!p2@AR!0.65!4.75!AR;;chr12:115122005..115122016,-!p3@TBX3!0.65!4.25!TBX3;;chr12:115122262..115122271,-!p7@TBX3!0.65!3.50!TBX3;;chr12:66357214..66357233,+!p13@HMGA2!0.65!3.50!HMGA2;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!0.65!3.50!PEG3;;chr1:170632762..170632786,+!p13@PRRX1!0.65!3.50!PRRX1;;chr2:102091144..102091183,-!p2@RFX8!0.65!3.50!RFX8;;chr2:45236579..45236596,-!p2@SIX2!0.65!3.50!SIX2;;chr2:96012397..96012417,+!p3@KCNIP3!0.65!3.50!KCNIP3;;chr12:96588143..96588185,+!p1@ELK3!0.64!48.30!ELK3;;chr11:113930291..113930339,+!p2@ZBTB16!0.64!6.01!ZBTB16;;chr7:14028488..14028516,-!p2@ETV1!0.64!3.75!ETV1;;chr8:25902876..25902936,-!p1@EBF2!0.64!3.38!EBF2;;chr12:66218469..66218477,+!p16@HMGA2!0.64!3.38!HMGA2;;chr1:47779762..47779827,-!p1@STIL,p1@TAL1!0.63!17.14!TAL1;;chr4:26322419..26322479,+!p2@RBPJ!0.62!46.04!RBPJ;;chr6:85474299..85474324,-!p1@TBX18!0.62!6.26!TBX18;;chr1:170633245..170633256,+!p14@PRRX1!0.62!3.13!PRRX1;;chr14:55493763..55493824,-!p1@WDHD1!0.61!27.40!WDHD1;;chr20:31350184..31350200,+!p1@DNMT3B!0.61!7.26!DNMT3B;;chr19:13134772..13134822,+!p2@NFIX!0.61!4.88!NFIX;;chr17:41622925..41622976,-!p3@ETV4!0.60!4.88!ETV4;;chr16:86600458..86600461,+!p3@FOXC2!0.60!3.00!FOXC2;;chr16:86612320..86612394,+!p1@FOXL1!0.60!3.00!FOXL1;;chr8:60031840..60031869,-!p5@TOX!0.60!3.00!TOX;;chr20:55205825..55205847,+!p2@TFAP2C!0.60!3.00!TFAP2C;;chr11:44331576..44331650,-!p1@ALX4!0.60!3.00!ALX4;;chr7:42276787..42276815,-!p1@GLI3!0.59!8.88!GLI3;;chr1:75600067..75600094,+!p2@LHX8!0.59!2.88!LHX8;;chr8:49833978..49833996,-!p1@SNAI2!0.58!70.44!SNAI2;;chr8:77593474..77593612,+!p1@ZFHX4!0.58!14.01!ZFHX4;;chr8:60031762..60031803,-!p3@TOX!0.58!4.38!TOX;;chr6:20402102..20402152,+!p1@E2F3!0.57!13.26!E2F3;;chr5:150284532..150284549,-!p1@ZNF300!0.57!6.51!ZNF300;;chr1:247171347..247171366,-!p2@ZNF695!0.57!5.63!ZNF695;;chr1:110613276..110613299,-!p2@ALX3!0.57!2.75!ALX3;;chr1:75602043..75602093,+!p1@LHX8!0.57!2.75!LHX8;;chr18:52969674..52969685,-!p24@TCF4!0.57!2.75!TCF4;;chr8:116673894..116673913,-!p12@TRPS1!0.57!2.75!TRPS1;;chr7:42276822..42276895,-!p2@GLI3!0.56!9.38!GLI3;;chr1:61547894..61547968,+!p2@NFIA!0.56!9.01!NFIA;;chr3:157823517..157823562,-!p1@SHOX2!0.56!2.88!SHOX2;;chr2:5832493..5832507,+!p2@SOX11!0.56!2.63!SOX11;;chr19:57352109..57352153,-!p2@ZIM2!0.56!2.63!ZIM2;;chr20:42602000..42602034,+!p5@TOX2!0.56!2.63!TOX2;;chr6:1389871..1389876,+!p4@FOXF2!0.56!2.63!FOXF2;;chr7:96654026..96654061,-!p2@DLX5!0.56!2.63!DLX5;;chr8:60031934..60031986,-!p6@TOX!0.56!2.63!TOX;;chr4:1873100..1873152,+!p1@WHSC1!0.55!24.15!WHSC1;;chr21:47063625..47063658,+!p1@PCBP3!0.55!13.76!PCBP3;;chr7:44143978..44143989,+!p2@AEBP1!0.55!5.25!AEBP1;;chr6:45390002..45390023,+!p6@RUNX2!0.55!4.88!RUNX2;;chr3:141121847..141121868,+!p5@ZBTB38!0.55!4.25!ZBTB38;;chr19:10305581..10305646,-!p1@DNMT1!0.54!109.60!DNMT1;;chr6:35464817..35464894,-!p1@TEAD3!0.54!47.92!TEAD3;;chr19:23433144..23433204,-!p1@ZNF724P!0.54!13.51!ZNF724P;;chr5:178368186..178368238,+!p1@ZNF454!0.54!5.00!ZNF454;;chr5:72744445..72744466,-!p2@FOXD1!0.54!4.63!FOXD1;;chr17:41622834..41622883,-!p6@ETV4!0.54!3.13!ETV4;;chr1:170632051..170632081,+!p16@PRRX1!0.54!2.50!PRRX1;;chr1:170632647..170632659,+!p17@PRRX1!0.54!2.50!PRRX1;;chr1:170633058..170633084,+!p5@PRRX1!0.54!2.50!PRRX1;;chr2:172950227..172950249,+!p2@DLX1!0.54!2.50!DLX1;;chr19:3366570..3366619,+!p1@NFIC!0.53!98.09!NFIC;;chr7:148581360..148581425,-!p1@EZ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| ||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000057;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002556;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000075;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000165;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001007;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0010323;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0011137 | |||
|ffid_belonging_in_development=CL:0000134 | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 36: | Line 44: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Periodontal%2520Ligament%252c%2520donor2.CNhs11962.11319-117D5.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Periodontal%2520Ligament%252c%2520donor2.CNhs11962.11319-117D5.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Periodontal%2520Ligament%252c%2520donor2.CNhs11962.11319-117D5.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Periodontal%2520Ligament%252c%2520donor2.CNhs11962.11319-117D5.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Periodontal%2520Ligament%252c%2520donor2.CNhs11962.11319-117D5.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11319-117D5 | |id=FF:11319-117D5 | ||
|is_a=EFO:0002091;;FF:0000067 | |is_a=EFO:0002091;;FF:0000067 | ||
|is_obsolete= | |is_obsolete= | ||
|library_id=CNhs11962 | |||
|library_id_phase_based=2:CNhs11962 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11319 | |||
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10004.AGTTCC.11319 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11319 | |||
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10004.AGTTCC.11319 | |||
|name=Fibroblast - Periodontal Ligament, donor2 | |name=Fibroblast - Periodontal Ligament, donor2 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 44: | Line 65: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11962,LSID836,release011,COMPLETED | |profile_hcage=CNhs11962,LSID836,release011,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=SRhi10004,,, | |profile_srnaseq=SRhi10004,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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| |||
|rna_box=117 | |rna_box=117 | ||
|rna_catalog_number=SC2635 | |rna_catalog_number=SC2635 | ||
| Line 58: | Line 82: | ||
|rna_tube_id=117D5 | |rna_tube_id=117D5 | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|rnaseq_library_id=SRhi10004.AGTTCC | |||
|sample_age=fetal | |sample_age=fetal | ||
|sample_category=primary cells | |||
|sample_cell_catalog=N/A | |sample_cell_catalog=N/A | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 80: | Line 106: | ||
|top_motifs=TFDP1:1.77608075549;TOPORS:1.5157380392;GFI1:1.41981338001;E2F1..5:1.38507585312;ALX4:1.30409372567;NFY{A,B,C}:1.19689032998;PAX8:1.10197064252;NKX2-2,8:1.06818837438;ZIC1..3:1.05663375165;AIRE:1.03664935076;MYB:0.940038947204;PDX1:0.896639836915;ZNF238:0.835869823999;EN1,2:0.813507164028;FOXD3:0.784660858093;PAX4:0.780982418356;ZNF143:0.773597665991;POU3F1..4:0.734778716458;NR3C1:0.689437289074;NR1H4:0.685048612429;RXR{A,B,G}:0.674166432679;MZF1:0.674070411014;TFAP4:0.659771997513;GZF1:0.654395106532;NRF1:0.609006644214;NKX3-1:0.589446480472;NKX6-1,2:0.586051214085;UFEwm:0.584271398741;TFAP2{A,C}:0.580765347849;SOX17:0.566055678021;GTF2A1,2:0.565399501245;TEF:0.561764581093;XCPE1{core}:0.536162849451;YY1:0.498458294043;PBX1:0.475165924939;NFIX:0.472684371182;PRDM1:0.456517521373;PATZ1:0.452862521748;STAT1,3:0.45108629787;KLF4:0.450813542539;LHX3,4:0.447866395575;PITX1..3:0.430902097822;CDC5L:0.429746482877;FOXQ1:0.416958907747;GTF2I:0.388710716893;NANOG{mouse}:0.384970119093;TEAD1:0.382977118054;T:0.379972363452;PAX5:0.366881258706;HOX{A5,B5}:0.359663430167;MYBL2:0.342013615666;EVI1:0.341275102878;ONECUT1,2:0.338174684377;POU1F1:0.323476519291;GATA4:0.294603130971;TLX1..3_NFIC{dimer}:0.288451684838;ZFP161:0.288219853334;STAT5{A,B}:0.282762352356;GFI1B:0.274212868033;SPZ1:0.27051411934;HES1:0.250506562088;HIC1:0.245572163924;SP1:0.240246053833;AR:0.24003013512;TAL1_TCF{3,4,12}:0.238799409708;HOXA9_MEIS1:0.218811653935;EGR1..3:0.207643247877;BACH2:0.204207723058;EBF1:0.193693998299;ELK1,4_GABP{A,B1}:0.188398737144;POU2F1..3:0.187951377141;NKX2-3_NKX2-5:0.185168963761;MAZ:0.178286114592;NFATC1..3:0.177557330584;HAND1,2:0.147702237517;ESR1:0.13852905237;BREu{core}:0.124126603485;FOXP1:0.118216560581;TGIF1:0.109131452639;PAX3,7:0.093047757221;PAX1,9:0.0806177618024;NKX2-1,4:0.0708106432331;SOX{8,9,10}:0.0687871662136;XBP1:0.0652266615512;FOS_FOS{B,L1}_JUN{B,D}:0.0487965446664;TFAP2B:0.0399755841136;ALX1:0.0392571477971;LEF1_TCF7_TCF7L1,2:0.0383536469336;NFE2L2:0.0238017505965;HOX{A4,D4}:0.00904317530301;MED-1{core}:-0.00635047676443;GLI1..3:-0.0129053319401;ARID5B:-0.0175139857031;AHR_ARNT_ARNT2:-0.0246341969589;MTE{core}:-0.0343150873806;TFCP2:-0.0388114520502;ZBTB6:-0.0399332653266;FOSL2:-0.0446808294881;FOXO1,3,4:-0.0463512349008;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.0515639501902;CDX1,2,4:-0.0657409790052;HNF4A_NR2F1,2:-0.0744354596697;HBP1_HMGB_SSRP1_UBTF:-0.0770511407049;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.0835674141001;ZBTB16:-0.092693768617;ZNF423:-0.102373291133;RREB1:-0.115037652108;PPARG:-0.115480814009;NANOG:-0.118570424581;SOX5:-0.128641552888;HNF1A:-0.135871118979;TBX4,5:-0.137656041224;HLF:-0.145071020217;TP53:-0.148920931047;HSF1,2:-0.150495567618;SRF:-0.164130605494;PRRX1,2:-0.181715313192;RFX1:-0.191944352592;FOXM1:-0.192135110391;FOX{F1,F2,J1}:-0.198194760499;PAX6:-0.202333116193;RBPJ:-0.205315151969;CREB1:-0.210246295081;NFE2:-0.217381266054;CEBPA,B_DDIT3:-0.221497331343;MYFfamily:-0.225665797196;IKZF1:-0.23033348362;FOX{I1,J2}:-0.233980278854;ELF1,2,4:-0.239541446654;SOX2:-0.241544272033;POU5F1:-0.242196026373;RFX2..5_RFXANK_RFXAP:-0.262753929438;CUX2:-0.279151290554;ATF6:-0.303718471653;MTF1:-0.310945320008;GCM1,2:-0.312101432126;RUNX1..3:-0.338533671741;NR5A1,2:-0.342927348395;FOXA2:-0.35597178131;MEF2{A,B,C,D}:-0.359333899071;JUN:-0.38025012207;CRX:-0.384373948403;NR6A1:-0.388512084801;BPTF:-0.401907101427;NHLH1,2:-0.402306927959;ZNF148:-0.415993138762;ESRRA:-0.418413299441;GATA6:-0.451711349412;SPI1:-0.454715260926;NFKB1_REL_RELA:-0.455976694334;FOXN1:-0.460356831491;FOXP3:-0.464919514116;bHLH_family:-0.467469997646;HMGA1,2:-0.471044716553;DMAP1_NCOR{1,2}_SMARC:-0.473843951591;IRF7:-0.481256507876;TBP:-0.491013577399;SPIB:-0.497423801917;REST:-0.524439931518;HOX{A6,A7,B6,B7}:-0.525802877125;ZNF384:-0.534192057309;OCT4_SOX2{dimer}:-0.560032222845;RXRA_VDR{dimer}:-0.564616993872;IRF1,2:-0.572685666181;NFIL3:-0.578035162301;NFE2L1:-0.584262184237;ATF4:-0.584307312929;ATF5_CREB3:-0.589534368542;IKZF2:-0.591236481849;ADNP_IRX_SIX_ZHX:-0.596571589128;ETS1,2:-0.60258327953;SMAD1..7,9:-0.620914226317;SNAI1..3:-0.638285973988;HMX1:-0.673832017309;RORA:-0.765943825669;VSX1,2:-0.77049651252;MYOD1:-0.776196937529;NKX3-2:-0.785853404734;MAFB:-0.788009169757;POU6F1:-0.789966318911;STAT2,4,6:-0.8206483194;EP300:-0.86795885305;PAX2:-0.884372527909;FOXL1:-0.8855241496;ZEB1:-0.942101661359;ATF2:-0.949280287919;LMO2:-0.952669480575;HIF1A:-0.974516251619;FOX{D1,D2}:-0.990594345423;SREBF1,2:-1.00036881172;DBP:-1.03247887502;TLX2:-1.36610531701 | |top_motifs=TFDP1:1.77608075549;TOPORS:1.5157380392;GFI1:1.41981338001;E2F1..5:1.38507585312;ALX4:1.30409372567;NFY{A,B,C}:1.19689032998;PAX8:1.10197064252;NKX2-2,8:1.06818837438;ZIC1..3:1.05663375165;AIRE:1.03664935076;MYB:0.940038947204;PDX1:0.896639836915;ZNF238:0.835869823999;EN1,2:0.813507164028;FOXD3:0.784660858093;PAX4:0.780982418356;ZNF143:0.773597665991;POU3F1..4:0.734778716458;NR3C1:0.689437289074;NR1H4:0.685048612429;RXR{A,B,G}:0.674166432679;MZF1:0.674070411014;TFAP4:0.659771997513;GZF1:0.654395106532;NRF1:0.609006644214;NKX3-1:0.589446480472;NKX6-1,2:0.586051214085;UFEwm:0.584271398741;TFAP2{A,C}:0.580765347849;SOX17:0.566055678021;GTF2A1,2:0.565399501245;TEF:0.561764581093;XCPE1{core}:0.536162849451;YY1:0.498458294043;PBX1:0.475165924939;NFIX:0.472684371182;PRDM1:0.456517521373;PATZ1:0.452862521748;STAT1,3:0.45108629787;KLF4:0.450813542539;LHX3,4:0.447866395575;PITX1..3:0.430902097822;CDC5L:0.429746482877;FOXQ1:0.416958907747;GTF2I:0.388710716893;NANOG{mouse}:0.384970119093;TEAD1:0.382977118054;T:0.379972363452;PAX5:0.366881258706;HOX{A5,B5}:0.359663430167;MYBL2:0.342013615666;EVI1:0.341275102878;ONECUT1,2:0.338174684377;POU1F1:0.323476519291;GATA4:0.294603130971;TLX1..3_NFIC{dimer}:0.288451684838;ZFP161:0.288219853334;STAT5{A,B}:0.282762352356;GFI1B:0.274212868033;SPZ1:0.27051411934;HES1:0.250506562088;HIC1:0.245572163924;SP1:0.240246053833;AR:0.24003013512;TAL1_TCF{3,4,12}:0.238799409708;HOXA9_MEIS1:0.218811653935;EGR1..3:0.207643247877;BACH2:0.204207723058;EBF1:0.193693998299;ELK1,4_GABP{A,B1}:0.188398737144;POU2F1..3:0.187951377141;NKX2-3_NKX2-5:0.185168963761;MAZ:0.178286114592;NFATC1..3:0.177557330584;HAND1,2:0.147702237517;ESR1:0.13852905237;BREu{core}:0.124126603485;FOXP1:0.118216560581;TGIF1:0.109131452639;PAX3,7:0.093047757221;PAX1,9:0.0806177618024;NKX2-1,4:0.0708106432331;SOX{8,9,10}:0.0687871662136;XBP1:0.0652266615512;FOS_FOS{B,L1}_JUN{B,D}:0.0487965446664;TFAP2B:0.0399755841136;ALX1:0.0392571477971;LEF1_TCF7_TCF7L1,2:0.0383536469336;NFE2L2:0.0238017505965;HOX{A4,D4}:0.00904317530301;MED-1{core}:-0.00635047676443;GLI1..3:-0.0129053319401;ARID5B:-0.0175139857031;AHR_ARNT_ARNT2:-0.0246341969589;MTE{core}:-0.0343150873806;TFCP2:-0.0388114520502;ZBTB6:-0.0399332653266;FOSL2:-0.0446808294881;FOXO1,3,4:-0.0463512349008;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.0515639501902;CDX1,2,4:-0.0657409790052;HNF4A_NR2F1,2:-0.0744354596697;HBP1_HMGB_SSRP1_UBTF:-0.0770511407049;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.0835674141001;ZBTB16:-0.092693768617;ZNF423:-0.102373291133;RREB1:-0.115037652108;PPARG:-0.115480814009;NANOG:-0.118570424581;SOX5:-0.128641552888;HNF1A:-0.135871118979;TBX4,5:-0.137656041224;HLF:-0.145071020217;TP53:-0.148920931047;HSF1,2:-0.150495567618;SRF:-0.164130605494;PRRX1,2:-0.181715313192;RFX1:-0.191944352592;FOXM1:-0.192135110391;FOX{F1,F2,J1}:-0.198194760499;PAX6:-0.202333116193;RBPJ:-0.205315151969;CREB1:-0.210246295081;NFE2:-0.217381266054;CEBPA,B_DDIT3:-0.221497331343;MYFfamily:-0.225665797196;IKZF1:-0.23033348362;FOX{I1,J2}:-0.233980278854;ELF1,2,4:-0.239541446654;SOX2:-0.241544272033;POU5F1:-0.242196026373;RFX2..5_RFXANK_RFXAP:-0.262753929438;CUX2:-0.279151290554;ATF6:-0.303718471653;MTF1:-0.310945320008;GCM1,2:-0.312101432126;RUNX1..3:-0.338533671741;NR5A1,2:-0.342927348395;FOXA2:-0.35597178131;MEF2{A,B,C,D}:-0.359333899071;JUN:-0.38025012207;CRX:-0.384373948403;NR6A1:-0.388512084801;BPTF:-0.401907101427;NHLH1,2:-0.402306927959;ZNF148:-0.415993138762;ESRRA:-0.418413299441;GATA6:-0.451711349412;SPI1:-0.454715260926;NFKB1_REL_RELA:-0.455976694334;FOXN1:-0.460356831491;FOXP3:-0.464919514116;bHLH_family:-0.467469997646;HMGA1,2:-0.471044716553;DMAP1_NCOR{1,2}_SMARC:-0.473843951591;IRF7:-0.481256507876;TBP:-0.491013577399;SPIB:-0.497423801917;REST:-0.524439931518;HOX{A6,A7,B6,B7}:-0.525802877125;ZNF384:-0.534192057309;OCT4_SOX2{dimer}:-0.560032222845;RXRA_VDR{dimer}:-0.564616993872;IRF1,2:-0.572685666181;NFIL3:-0.578035162301;NFE2L1:-0.584262184237;ATF4:-0.584307312929;ATF5_CREB3:-0.589534368542;IKZF2:-0.591236481849;ADNP_IRX_SIX_ZHX:-0.596571589128;ETS1,2:-0.60258327953;SMAD1..7,9:-0.620914226317;SNAI1..3:-0.638285973988;HMX1:-0.673832017309;RORA:-0.765943825669;VSX1,2:-0.77049651252;MYOD1:-0.776196937529;NKX3-2:-0.785853404734;MAFB:-0.788009169757;POU6F1:-0.789966318911;STAT2,4,6:-0.8206483194;EP300:-0.86795885305;PAX2:-0.884372527909;FOXL1:-0.8855241496;ZEB1:-0.942101661359;ATF2:-0.949280287919;LMO2:-0.952669480575;HIF1A:-0.974516251619;FOX{D1,D2}:-0.990594345423;SREBF1,2:-1.00036881172;DBP:-1.03247887502;TLX2:-1.36610531701 | ||
|xref= | |xref= | ||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11319-117D5;search_select_hide=table117:FF:11319-117D5 | |||
}} | }} | ||
Latest revision as of 16:33, 3 June 2020
| Name: | Fibroblast - Periodontal Ligament, donor2 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs11962 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7, 8 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11962
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11962
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.263 |
| 10 | 10 | 0.988 |
| 100 | 100 | 0.839 |
| 101 | 101 | 0.542 |
| 102 | 102 | 0.936 |
| 103 | 103 | 0.0786 |
| 104 | 104 | 0.843 |
| 105 | 105 | 0.464 |
| 106 | 106 | 0.00116 |
| 107 | 107 | 0.286 |
| 108 | 108 | 0.481 |
| 109 | 109 | 0.373 |
| 11 | 11 | 0.454 |
| 110 | 110 | 0.577 |
| 111 | 111 | 0.683 |
| 112 | 112 | 0.0446 |
| 113 | 113 | 0.102 |
| 114 | 114 | 0.0407 |
| 115 | 115 | 0.707 |
| 116 | 116 | 0.791 |
| 117 | 117 | 0.814 |
| 118 | 118 | 0.643 |
| 119 | 119 | 0.2 |
| 12 | 12 | 0.968 |
| 120 | 120 | 0.3 |
| 121 | 121 | 0.832 |
| 122 | 122 | 0.0603 |
| 123 | 123 | 0.0525 |
| 124 | 124 | 0.425 |
| 125 | 125 | 0.771 |
| 126 | 126 | 0.695 |
| 127 | 127 | 0.519 |
| 128 | 128 | 0.106 |
| 129 | 129 | 0.208 |
| 13 | 13 | 0.486 |
| 130 | 130 | 0.0135 |
| 131 | 131 | 0.226 |
| 132 | 132 | 0.883 |
| 133 | 133 | 0.313 |
| 134 | 134 | 0.306 |
| 135 | 135 | 0.00135 |
| 136 | 136 | 0.464 |
| 137 | 137 | 0.199 |
| 138 | 138 | 0.116 |
| 139 | 139 | 5.99888e-5 |
| 14 | 14 | 0.163 |
| 140 | 140 | 0.943 |
| 141 | 141 | 0.535 |
| 142 | 142 | 0.963 |
| 143 | 143 | 0.0717 |
| 144 | 144 | 0.666 |
| 145 | 145 | 0.936 |
| 146 | 146 | 0.881 |
| 147 | 147 | 0.72 |
| 148 | 148 | 0.114 |
| 149 | 149 | 0.254 |
| 15 | 15 | 0.181 |
| 150 | 150 | 0.784 |
| 151 | 151 | 0.179 |
| 152 | 152 | 0.0471 |
| 153 | 153 | 0.877 |
| 154 | 154 | 0.979 |
| 155 | 155 | 0.188 |
| 156 | 156 | 0.589 |
| 157 | 157 | 0.101 |
| 158 | 158 | 0.0204 |
| 159 | 159 | 0.188 |
| 16 | 16 | 0.615 |
| 160 | 160 | 0.744 |
| 161 | 161 | 0.571 |
| 162 | 162 | 0.206 |
| 163 | 163 | 0.802 |
| 164 | 164 | 0.593 |
| 165 | 165 | 0.275 |
| 166 | 166 | 0.993 |
| 167 | 167 | 0.26 |
| 168 | 168 | 0.287 |
| 169 | 169 | 0.0421 |
| 17 | 17 | 0.22 |
| 18 | 18 | 0.567 |
| 19 | 19 | 0.992 |
| 2 | 2 | 0.66 |
| 20 | 20 | 0.578 |
| 21 | 21 | 0.298 |
| 22 | 22 | 0.597 |
| 23 | 23 | 0.0545 |
| 24 | 24 | 0.954 |
| 25 | 25 | 0.336 |
| 26 | 26 | 0.756 |
| 27 | 27 | 0.247 |
| 28 | 28 | 0.476 |
| 29 | 29 | 0.57 |
| 3 | 3 | 0.355 |
| 30 | 30 | 0.933 |
| 31 | 31 | 0.497 |
| 32 | 32 | 0.96 |
| 33 | 33 | 0.921 |
| 34 | 34 | 0.444 |
| 35 | 35 | 0.245 |
| 36 | 36 | 0.0882 |
| 37 | 37 | 0.132 |
| 38 | 38 | 0.402 |
| 39 | 39 | 0.794 |
| 4 | 4 | 0.457 |
| 40 | 40 | 0.172 |
| 41 | 41 | 0.0452 |
| 42 | 42 | 0.732 |
| 43 | 43 | 0.22 |
| 44 | 44 | 0.38 |
| 45 | 45 | 0.274 |
| 46 | 46 | 0.382 |
| 47 | 47 | 0.43 |
| 48 | 48 | 0.59 |
| 49 | 49 | 0.19 |
| 5 | 5 | 0.1 |
| 50 | 50 | 0.546 |
| 51 | 51 | 0.552 |
| 52 | 52 | 0.184 |
| 53 | 53 | 0.361 |
| 54 | 54 | 0.728 |
| 55 | 55 | 0.934 |
| 56 | 56 | 0.888 |
| 57 | 57 | 0.785 |
| 58 | 58 | 0.0491 |
| 59 | 59 | 0.471 |
| 6 | 6 | 0.932 |
| 60 | 60 | 0.00905 |
| 61 | 61 | 0.678 |
| 62 | 62 | 0.0486 |
| 63 | 63 | 0.735 |
| 64 | 64 | 0.514 |
| 65 | 65 | 0.13 |
| 66 | 66 | 0.0884 |
| 67 | 67 | 0.519 |
| 68 | 68 | 0.54 |
| 69 | 69 | 0.478 |
| 7 | 7 | 0.155 |
| 70 | 70 | 0.0308 |
| 71 | 71 | 0.233 |
| 72 | 72 | 0.249 |
| 73 | 73 | 0.11 |
| 74 | 74 | 0.957 |
| 75 | 75 | 0.244 |
| 76 | 76 | 0.766 |
| 77 | 77 | 0.329 |
| 78 | 78 | 0.631 |
| 79 | 79 | 0.842 |
| 8 | 8 | 0.512 |
| 80 | 80 | 0.00708 |
| 81 | 81 | 0.415 |
| 82 | 82 | 0.00592 |
| 83 | 83 | 0.381 |
| 84 | 84 | 0.937 |
| 85 | 85 | 0.00226 |
| 86 | 86 | 0.285 |
| 87 | 87 | 0.339 |
| 88 | 88 | 0.461 |
| 89 | 89 | 0.0601 |
| 9 | 9 | 0.461 |
| 90 | 90 | 0.279 |
| 91 | 91 | 0.866 |
| 92 | 92 | 0.105 |
| 93 | 93 | 0.752 |
| 94 | 94 | 0.311 |
| 95 | 95 | 0.347 |
| 96 | 96 | 0.284 |
| 97 | 97 | 0.966 |
| 98 | 98 | 0.102 |
| 99 | 99 | 0.0264 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11962
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000067 human fibroblast of periodontium sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0000057 (fibroblast)
0002556 (fibroblast of periodontium)
UBERON: Anatomy
0000468 (multi-cellular organism)
0002384 (connective tissue)
0000033 (head)
0000479 (tissue)
0001007 (digestive system)
0004121 (ectoderm-derived structure)
0004119 (endoderm-derived structure)
0010314 (structure with developmental contribution from neural crest)
0011216 (organ system subdivision)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0001444 (subdivision of head)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000075 (subdivision of skeletal system)
0010317 (germ layer / neural crest derived structure)
0001555 (digestive tract)
0001758 (periodontium)
0000153 (anterior region of body)
0007811 (craniocervical region)
0002204 (musculoskeletal system)
0001434 (skeletal system)
0000165 (mouth)
0003672 (dentition)
0011137 (axial skeletal system)
0010323 (cranial skeletal system)
0003129 (skull)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000057 (fibroblast sample)
0000001 (sample)
0000067 (human fibroblast of periodontium sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)
