FF:10170-103B8: Difference between revisions

Latest revision as of 12:24, 3 June 2020

Name:	medial frontal gyrus - adult, donor10196
Species:	Human (Homo sapiens)
Library ID:	CNhs13796
Sample type:	tissues
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5, 6, 7, 8, 9
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	medial frontal gyrus
dev stage	NA
sex	female
age	60
cell type	CELL MIXTURE - tissue sample
cell line	NA
company	NA
collaboration	Peter Heutink
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005484

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs13796		CAGE		DRX008682		DRR009554

Accession ID Hg19

Library id		BAM		CTSS
CNhs13796		DRZ000979		DRZ002364

Accession ID Hg38

Library id		BAM		CTSS
CNhs13796		DRZ012329		DRZ013714

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0.443
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0.804
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.328
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0.563
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0.276
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0.276
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.111
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.689
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.0999
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.172
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.797
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0.443
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0.813
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0.908
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0.657
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0.657
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0.12
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0.563
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0.276
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0.443
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.553
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0.735
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0.8
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0.735
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0.276
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0.276
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0.443
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13796

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.043
MA0003.1	MA0003.1	0.327
MA0004.1	MA0004.1	0.316
MA0006.1	MA0006.1	0.211
MA0007.1	MA0007.1	0.185
MA0009.1	MA0009.1	0.253
MA0014.1	MA0014.1	0.651
MA0017.1	MA0017.1	0.00211
MA0018.2	MA0018.2	0.0611
MA0019.1	MA0019.1	0.516
MA0024.1	MA0024.1	0.598
MA0025.1	MA0025.1	0.551
MA0027.1	MA0027.1	0.4
MA0028.1	MA0028.1	0.0696
MA0029.1	MA0029.1	0.0244
MA0030.1	MA0030.1	0.75
MA0031.1	MA0031.1	0.283
MA0035.2	MA0035.2	0.0294
MA0038.1	MA0038.1	0.629
MA0039.2	MA0039.2	0.0407
MA0040.1	MA0040.1	0.34
MA0041.1	MA0041.1	0.663
MA0042.1	MA0042.1	0.921
MA0043.1	MA0043.1	0.704
MA0046.1	MA0046.1	0.00219
MA0047.2	MA0047.2	0.0101
MA0048.1	MA0048.1	0.0798
MA0050.1	MA0050.1	2.66735e-4
MA0051.1	MA0051.1	0.0224
MA0052.1	MA0052.1	0.723
MA0055.1	MA0055.1	0.0012
MA0057.1	MA0057.1	0.87
MA0058.1	MA0058.1	0.216
MA0059.1	MA0059.1	0.0991
MA0060.1	MA0060.1	0.931
MA0061.1	MA0061.1	0.00763
MA0062.2	MA0062.2	0.00123
MA0065.2	MA0065.2	7.05094e-4
MA0066.1	MA0066.1	0.0429
MA0067.1	MA0067.1	0.674
MA0068.1	MA0068.1	0.696
MA0069.1	MA0069.1	0.353
MA0070.1	MA0070.1	0.543
MA0071.1	MA0071.1	0.0179
MA0072.1	MA0072.1	0.257
MA0073.1	MA0073.1	0.314
MA0074.1	MA0074.1	0.133
MA0076.1	MA0076.1	0.122
MA0077.1	MA0077.1	0.448
MA0078.1	MA0078.1	0.997
MA0079.2	MA0079.2	0.899
MA0080.2	MA0080.2	7.36941e-10
MA0081.1	MA0081.1	0.0249
MA0083.1	MA0083.1	0.00566
MA0084.1	MA0084.1	0.977
MA0087.1	MA0087.1	0.829
MA0088.1	MA0088.1	0.203
MA0090.1	MA0090.1	0.301
MA0091.1	MA0091.1	0.413
MA0092.1	MA0092.1	0.348
MA0093.1	MA0093.1	0.316
MA0099.2	MA0099.2	1.17885e-19
MA0100.1	MA0100.1	0.59
MA0101.1	MA0101.1	0.00134
MA0102.2	MA0102.2	0.113
MA0103.1	MA0103.1	0.359
MA0104.2	MA0104.2	0.611
MA0105.1	MA0105.1	0.0129
MA0106.1	MA0106.1	0.0424
MA0107.1	MA0107.1	0.00251
MA0108.2	MA0108.2	0.249
MA0111.1	MA0111.1	0.571
MA0112.2	MA0112.2	0.00244
MA0113.1	MA0113.1	0.481
MA0114.1	MA0114.1	0.00215
MA0115.1	MA0115.1	0.852
MA0116.1	MA0116.1	0.0188
MA0117.1	MA0117.1	0.88
MA0119.1	MA0119.1	0.0726
MA0122.1	MA0122.1	0.511
MA0124.1	MA0124.1	0.832
MA0125.1	MA0125.1	0.455
MA0131.1	MA0131.1	0.882
MA0135.1	MA0135.1	0.0492
MA0136.1	MA0136.1	7.11915e-14
MA0137.2	MA0137.2	0.64
MA0138.2	MA0138.2	0.0784
MA0139.1	MA0139.1	0.432
MA0140.1	MA0140.1	0.00564
MA0141.1	MA0141.1	0.0112
MA0142.1	MA0142.1	0.76
MA0143.1	MA0143.1	0.653
MA0144.1	MA0144.1	0.295
MA0145.1	MA0145.1	0.134
MA0146.1	MA0146.1	0.00457
MA0147.1	MA0147.1	0.458
MA0148.1	MA0148.1	0.0219
MA0149.1	MA0149.1	0.0459
MA0150.1	MA0150.1	5.74107e-4
MA0152.1	MA0152.1	0.516
MA0153.1	MA0153.1	0.0552
MA0154.1	MA0154.1	0.068
MA0155.1	MA0155.1	0.516
MA0156.1	MA0156.1	3.86465e-10
MA0157.1	MA0157.1	0.231
MA0159.1	MA0159.1	0.00808
MA0160.1	MA0160.1	0.0155
MA0162.1	MA0162.1	0.142
MA0163.1	MA0163.1	3.28718e-4
MA0164.1	MA0164.1	0.946
MA0258.1	MA0258.1	0.0153
MA0259.1	MA0259.1	0.95

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13796

Novel motif	Logo	P-value
1	1	0.0852
10	10	0.0581
100	100	0.329
101	101	0.483
102	102	0.839
103	103	0.352
104	104	0.109
105	105	0.0509
106	106	0.0277
107	107	0.0626
108	108	0.997
109	109	0.00288
11	11	0.0195
110	110	0.054
111	111	0.35
112	112	0.653
113	113	0.438
114	114	0.387
115	115	0.999
116	116	0.091
117	117	0.00835
118	118	0.123
119	119	0.273
12	12	0.41
120	120	0.313
121	121	0.167
122	122	0.981
123	123	0.619
124	124	0.00699
125	125	0.428
126	126	0.0105
127	127	0.588
128	128	0.218
129	129	0.595
13	13	3.05299e-4
130	130	0.0537
131	131	0.105
132	132	0.839
133	133	0.00315
134	134	0.67
135	135	0.164
136	136	4.88254e-4
137	137	0.711
138	138	0.779
139	139	0.164
14	14	0.744
140	140	0.47
141	141	0.94
142	142	0.666
143	143	0.0982
144	144	0.917
145	145	0.0814
146	146	0.244
147	147	0.451
148	148	0.448
149	149	0.221
15	15	0.116
150	150	0.122
151	151	0.634
152	152	0.0589
153	153	0.896
154	154	0.442
155	155	0.766
156	156	0.309
157	157	0.425
158	158	0.384
159	159	0.0727
16	16	0.0594
160	160	0.268
161	161	0.156
162	162	0.657
163	163	0.687
164	164	0.0168
165	165	0.031
166	166	0.935
167	167	0.821
168	168	0.352
169	169	0.0125
17	17	0.154
18	18	0.23
19	19	0.161
2	2	0.688
20	20	0.101
21	21	0.0863
22	22	0.139
23	23	0.442
24	24	0.0319
25	25	0.506
26	26	3.10475e-5
27	27	0.956
28	28	0.619
29	29	0.0147
3	3	0.0493
30	30	0.967
31	31	0.895
32	32	0.0314
33	33	0.0566
34	34	0.458
35	35	0.871
36	36	0.265
37	37	0.0468
38	38	0.347
39	39	0.156
4	4	0.99
40	40	0.0353
41	41	0.393
42	42	0.25
43	43	0.0992
44	44	0.302
45	45	0.579
46	46	0.105
47	47	0.0867
48	48	0.044
49	49	0.214
5	5	0.71
50	50	0.149
51	51	0.501
52	52	0.354
53	53	0.929
54	54	0.406
55	55	0.392
56	56	0.498
57	57	0.449
58	58	0.423
59	59	0.0528
6	6	0.828
60	60	0.0456
61	61	0.0323
62	62	0.293
63	63	0.104
64	64	0.364
65	65	0.305
66	66	0.14
67	67	0.374
68	68	0.233
69	69	0.388
7	7	0.0388
70	70	0.0616
71	71	0.00984
72	72	0.389
73	73	0.022
74	74	0.883
75	75	0.0401
76	76	0.519
77	77	0.136
78	78	0.00159
79	79	0.253
8	8	0.0928
80	80	0.492
81	81	0.952
82	82	0.901
83	83	0.0319
84	84	0.557
85	85	0.368
86	86	0.187
87	87	1.72279e-4
88	88	0.878
89	89	0.794
9	9	0.287
90	90	0.411
91	91	0.825
92	92	0.809
93	93	0.746
94	94	0.246
95	95	0.0131
96	96	0.87
97	97	0.577
98	98	0.379
99	99	0.598

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs13796

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
FF:0000004 tissue sample
FF:0000210 human sample
UBERON:0002702 middle frontal gyrus
UBERON:0007023 adult organism

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0000955 (brain)
0000200 (gyrus)
0001870 (frontal cortex)
0000956 (cerebral cortex)
0000479 (tissue)
0002702 (middle frontal gyrus)
0004121 (ectoderm-derived structure)
0000064 (organ part)
0010314 (structure with developmental contribution from neural crest)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0000073 (regional part of nervous system)
0000477 (anatomical cluster)
0003528 (brain grey matter)
0002791 (regional part of telencephalon)
0000467 (anatomical system)
0002619 (regional part of cerebral cortex)
0001062 (anatomical entity)
0000480 (anatomical group)
0002616 (regional part of brain)
0002780 (regional part of forebrain)
0002020 (gray matter)
0010317 (germ layer / neural crest derived structure)
0001017 (central nervous system)
0001016 (nervous system)
0001869 (cerebral hemisphere)
0001893 (telencephalon)
0001890 (forebrain)
0000203 (pallium)
0001950 (neocortex)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000004 (tissue sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
UBERON:0002532 (epiblast (generic))
UBERON:0006601 (presumptive ectoderm)
UBERON:0010316 (germ layer / neural crest)

@@ Line 1: / Line 1: @@
 {{f5samples
-|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0000922,UBERON:0000955,UBERON:0000200,UBERON:0001870,UBERON:0000483,UBERON:0000956,UBERON:0000033,UBERON:0000479,UBERON:0002702,UBERON:0002346,UBERON:0000064,UBERON:0000073,UBERON:0004121,UBERON:0000062,UBERON:0004111,UBERON:0000475,UBERON:0000025,UBERON:0000061,UBERON:0000465,UBERON:0000480,UBERON:0000923,UBERON:0002050,UBERON:0005423,UBERON:0000477,UBERON:0002020,UBERON:0002791,UBERON:0003528,UBERON:0000481,UBERON:0000467,UBERON:0002616,UBERON:0002619,UBERON:0001062,UBERON:0000119,UBERON:0005291,UBERON:0002780,UBERON:0006598,UBERON:0002532,UBERON:0001017,UBERON:0001016,UBERON:0000153,UBERON:0007811,UBERON:0000924,UBERON:0001869,UBERON:0001893,UBERON:0001890,UBERON:0000203,UBERON:0005743,UBERON:0001950,UBERON:0003075,UBERON:0003056,UBERON:0001049,UBERON:0006238,UBERON:0006601,UBERON:0005068,UBERON:0006241,UBERON:0003080,UBERON:0006240,UBERON:0007284,UBERON:0007135
+|DRA_sample_Accession=CAGE@SAMD00005484
+|accession_numbers=CAGE;DRX008682;DRR009554;DRZ000979;DRZ002364;DRZ012329;DRZ013714
+|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0000955,UBERON:0000200,UBERON:0001870,UBERON:0000956,UBERON:0000479,UBERON:0002702,UBERON:0004121,UBERON:0000064,UBERON:0010314,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0000073,UBERON:0000477,UBERON:0003528,UBERON:0002791,UBERON:0000467,UBERON:0002619,UBERON:0001062,UBERON:0000480,UBERON:0002616,UBERON:0002780,UBERON:0002020,UBERON:0010317,UBERON:0001017,UBERON:0001016,UBERON:0001869,UBERON:0001893,UBERON:0001890,UBERON:0000203,UBERON:0001950
 |ancestors_in_cell_lineage_facet=
 |ancestors_in_disease_facet=
+|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000101,FF:0000001,FF:0000004
 |comment=
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!2.30!198.48!PEG3;;chr21:34442439..34442455,+!p1@OLIG1!2.23!170.13!OLIG1;;chr7:100065686..100065701,-!p2@TSC22D4!2.21!160.38!TSC22D4;;chr9:114287433..114287513,+!p1@ZNF483!2.14!337.59!ZNF483;;chr17:53342311..53342400,+!p1@HLF!2.06!129.37!HLF;;chr9:77112244..77112262,+!p1@RORB!2.03!119.62!RORB;;chr17:38821373..38821440,-!p1@KRT222,p2@SMARCE1!2.00!98.35!SMARCE1;;chr2:162272785..162272836,+!p1@TBR1!1.93!84.18!TBR1;;chrX:25034067..25034088,-!p1@ARX!1.92!81.52!ARX;;chr4:81118647..81118666,+!p1@PRDM8!1.91!105.44!PRDM8;;chr10:64134120..64134183,+!p1@ZNF365!1.91!94.81!ZNF365;;chr4:57547454..57547469,-!p1@HOPX!1.88!75.32!HOPX;;chr5:88178983..88179012,-!p1@MEF2C!1.86!515.69!MEF2C;;chr15:80733570..80733659,+!p2@ARNT2!1.84!68.23!ARNT2;;chr2:2334997..2335053,-!p1@MYT1L!1.82!64.68!MYT1L;;chr15:80735246..80735321,+!p3@ARNT2!1.81!62.91!ARNT2;;chr3:181429704..181429722,+!p1@SOX2!1.75!55.82!SOX2;;chr2:166326200..166326216,+!p1@CSRNP3!1.71!72.66!CSRNP3;;chr21:34442540..34442560,+!p2@OLIG1!1.71!50.51!OLIG1;;chr14:29235961..29236008,+!p1@FOXG1!1.70!49.62!FOXG1;;chr2:95963052..95963106,+!p1@KCNIP3!1.70!48.73!KCNIP3;;chr8:40755333..40755352,-!p1@ZMAT4!1.70!48.73!ZMAT4;;chr17:37764128..37764258,-!p1@NEUROD2!1.70!48.73!NEUROD2;;chr18:53070846..53070902,-!p6@TCF4!1.70!48.73!TCF4;;chr19:13135582..13135600,+!p3@NFIX!1.67!46.08!NFIX;;chr7:31380292..31380351,-!p1@NEUROD6!1.64!42.53!NEUROD6;;chr10:48355030..48355090,+!p1@ZNF488!1.62!51.39!ZNF488;;chr2:60781201..60781258,-!p3@BCL11A!1.62!40.76!BCL11A;;chr19:13135386..13135435,+!p4@NFIX!1.56!35.44!NFIX;;chrX:85969626..85969664,+!p1@DACH2!1.56!35.44!DACH2;;chr22:38380543..38380569,-!p1@SOX10!1.54!33.67!SOX10;;chr2:95963120..95963136,+!p2@KCNIP3!1.53!32.78!KCNIP3;;chr10:64133862..64133884,+!p4@ZNF365!1.52!31.90!ZNF365;;chr11:113930425..113930471,+!p1@ZBTB16!1.50!43.42!ZBTB16;;chr12:106976774..106976788,+!p1@RFX4!1.49!30.13!RFX4;;chr19:57352109..57352153,-!p2@ZIM2!1.49!30.13!ZIM2;;chr7:63505799..63505904,+!p1@ZNF727!1.48!29.24!ZNF727;;chr5:88179017..88179046,-!p2@MEF2C!1.47!111.64!MEF2C;;chr2:105470562..105470582,+!p@chr2:105470562..105470582,+!1.45!27.47!POU3F3;;chr11:125034640..125034655,+!p1@PKNOX2!1.44!26.58!PKNOX2;;chr11:61520075..61520136,+!p1@C11orf9!1.43!54.05!C11orf9;;chr15:80696703..80696754,+!p1@ARNT2!1.43!34.56!ARNT2;;chr19:38085768..38085821,+!p1@ZNF540!1.41!36.33!ZNF540;;chr3:181429741..181429767,+!p2@SOX2!1.41!24.81!SOX2;;chr4:57522598..57522664,-!p3@HOPX!1.40!23.92!HOPX;;chr10:119302232..119302265,+!p1@EMX2!1.40!23.92!EMX2;;chr11:8102846..8102892,+!p1@TUB!1.39!32.78!TUB;;chr3:141105705..141105770,+!p4@ZBTB38!1.39!28.35!ZBTB38;;chr14:33403881..33403924,+!p1@NPAS3!1.38!23.04!NPAS3;;chr1:151032860..151032918,+!p1@MLLT11!1.37!254.30!MLLT11;;chr9:126774018..126774055,+!p1@LHX2!1.36!22.15!LHX2;;chr9:126773880..126773895,+!p2@LHX2!1.36!22.15!LHX2;;chr12:106976678..106976708,+!p2@RFX4!1.35!21.27!RFX4;;chr21:34398234..34398250,+!p1@OLIG2!1.35!21.27!OLIG2;;chr18:53070913..53070933,-!p16@TCF4!1.33!20.38!TCF4;;chr2:192015750..192015793,-!p2@STAT4!1.32!26.58!STAT4;;chr4:57522166..57522260,-!p2@HOPX!1.32!23.04!HOPX;;chr2:180726291..180726311,-!p1@ZNF385B!1.31!19.49!ZNF385B;;chr19:46801639..46801699,+!p1@HIF3A!1.31!19.49!HIF3A;;chr17:7492684..7492778,-!p2@SOX15!1.30!39.87!SOX15;;chr12:26277817..26277863,-!p2@BHLHE41!1.29!24.81!BHLHE41;;chr10:31610110..31610159,+!p2@ZEB1!1.29!18.61!ZEB1;;chr2:162272889..162272915,+!p2@TBR1!1.29!18.61!TBR1;;chr3:24536253..24536328,-!p1@THRB!1.28!33.67!THRB;;chr2:145277882..145277967,-!p3@ZEB2!1.28!31.01!ZEB2;;chrX:118739835..118739862,-!p1@NKRF!1.27!19.49!NKRF;;chr14:29236269..29236285,+!p3@FOXG1!1.27!17.72!FOXG1;;chr11:125034605..125034636,+!p2@PKNOX2!1.25!16.84!PKNOX2;;chr14:29234581..29234601,+!p2@FOXG1!1.25!16.84!FOXG1;;chr3:141105235..141105307,+!p7@ZBTB38!1.25!16.84!ZBTB38;;chr8:53322304..53322340,-!p1@ST18!1.25!16.84!ST18;;chr2:166428839..166428859,+!p2@CSRNP3!1.23!15.95!CSRNP3;;chrX:118739782..118739829,-!p2@NKRF!1.23!15.95!NKRF;;chr16:1031762..1031781,+!p1@SOX8!1.21!15.06!SOX8;;chr12:26277956..26277980,-!p1@BHLHE41!1.18!50.51!BHLHE41;;chr15:31658288..31658338,+!p4@KLF13!1.18!14.18!KLF13;;chr9:126774058..126774081,+!p3@LHX2!1.18!14.18!LHX2;;chr1:151032922..151032951,+!p2@MLLT11!1.17!23.04!MLLT11;;chr17:70117153..70117174,+!p1@SOX9!1.16!138.23!SOX9;;chr19:38720294..38720348,-!p1@DPF1!1.16!16.84!DPF1;;chr21:34442584..34442587,+!p3@OLIG1!1.16!13.29!OLIG1;;chr10:64134045..64134083,+!p3@ZNF365!1.16!13.29!ZNF365;;chr5:138609489..138609542,+!p8@MATR3!1.16!13.29!MATR3;;chr6:15401104..15401166,+!p5@JARID2!1.16!13.29!JARID2;;chr2:166428861..166428883,+!p3@CSRNP3!1.16!13.29!CSRNP3;;chr2:60780753..60780800,-!p1@BCL11A!1.13!62.02!BCL11A;;chr2:60780607..60780624,-!p2@BCL11A!1.13!38.10!BCL11A;;chr1:151032782..151032801,+!p4@MLLT11!1.13!24.81!MLLT11;;chr11:113930291..113930339,+!p2@ZBTB16!1.13!20.38!ZBTB16;;chr11:31832862..31832884,-!p2@PAX6!1.13!12.40!PAX6;;chr12:103351444..103351461,+!p1@ASCL1!1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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000200;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000955;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000956;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001016;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001870;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001890;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001893;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002702;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0003528
+|ffid_belonging_in_development=UBERON:0002532,UBERON:0006601,UBERON:0010316
 |fonse_cell_line=
 |fonse_cell_line_closure=
@@ Line 36: / Line 42: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/medial%2520frontal%2520gyrus%2520-%2520adult%252c%2520donor10196.CNhs13796.10170-103B8.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/medial%2520frontal%2520gyrus%2520-%2520adult%252c%2520donor10196.CNhs13796.10170-103B8.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/medial%2520frontal%2520gyrus%2520-%2520adult%252c%2520donor10196.CNhs13796.10170-103B8.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/medial%2520frontal%2520gyrus%2520-%2520adult%252c%2520donor10196.CNhs13796.10170-103B8.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/medial%2520frontal%2520gyrus%2520-%2520adult%252c%2520donor10196.CNhs13796.10170-103B8.hg38.nobarcode.ctss.bed.gz
 |id=FF:10170-103B8
 |is_a=FF:0000004;;FF:0000210;;UBERON:0002702;;UBERON:0007023
 |is_obsolete=
+|library_id=CNhs13796
+|library_id_phase_based=2:CNhs13796
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10170
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10170
 |name=medial frontal gyrus - adult, donor10196
 |namespace=
@@ Line 46: / Line 63: @@
 |profile_rnaseq=
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 |rna_box=103
 |rna_catalog_number=
@@ Line 59: / Line 79: @@
 |rna_weight_ug=73.872
 |sample_age=60
+|sample_category=tissues
 |sample_cell_catalog=NA
 |sample_cell_line=
@@ Line 80: / Line 101: @@
 |top_motifs=REST:3.84545321499;DBP:3.81859156824;CUX2:3.7793412588;AHR_ARNT_ARNT2:3.56084025405;HOXA9_MEIS1:3.54329798001;ALX1:3.47064498332;FOXM1:3.42476012412;PRRX1,2:3.41505757918;MYFfamily:3.37601402099;NHLH1,2:3.31138488845;PAX4:2.96685078489;ZFP161:2.91108580876;ZBTB6:2.87918538548;PRDM1:2.81199649804;EGR1..3:2.79386506918;MTE{core}:2.77682656593;OCT4_SOX2{dimer}:2.75925709074;MED-1{core}:2.73950315323;MTF1:2.66162560826;RFX1:2.55906497362;ATF2:2.55595144715;NKX3-2:2.54836695308;PAX6:2.53704882334;ARID5B:2.51711921939;RREB1:2.47201295929;GATA4:2.40756016503;POU6F1:2.31533650987;JUN:2.23943651892;PAX5:2.10157755318;HOX{A4,D4}:2.05819196466;FOXQ1:2.02203921703;GTF2I:2.00232274179;POU1F1:1.9684342728;CDC5L:1.95181322628;POU5F1:1.92773051636;NKX2-3_NKX2-5:1.91480106264;MZF1:1.91064058507;KLF4:1.88292160786;POU3F1..4:1.77943793677;GFI1B:1.77924096884;NRF1:1.77844219955;BREu{core}:1.77318314822;RFX2..5_RFXANK_RFXAP:1.74933402428;TFAP2B:1.65569267537;TGIF1:1.62943810273;SOX17:1.61910026113;ESRRA:1.56640416679;HMGA1,2:1.54531047588;LEF1_TCF7_TCF7L1,2:1.53733454483;LMO2:1.53420316849;HBP1_HMGB_SSRP1_UBTF:1.53204223241;HIC1:1.5086737026;TFDP1:1.43117052173;ZNF384:1.40286977326;SOX{8,9,10}:1.39623667033;MAFB:1.38821003157;TEF:1.37883248782;SMAD1..7,9:1.35348444031;CRX:1.32502316108;SOX2:1.32230612668;HAND1,2:1.32008766359;SOX5:1.27914852739;MYOD1:1.27234317115;FOXL1:1.26853666982;PAX1,9:1.2281567727;MAZ:1.20697469555;NKX6-1,2:1.15859569857;IKZF2:1.1259012892;PATZ1:1.11023965359;NFIX:1.10932561014;RORA:1.08364480208;NFIL3:1.06061655733;FOXP1:1.02728617641;FOXD3:1.00685923878;PAX8:0.976406359485;NANOG:0.968329373062;XBP1:0.967803163;ZBTB16:0.966752879678;NR3C1:0.961172773526;ONECUT1,2:0.961013597722;CREB1:0.933086552606;BPTF:0.87548368837;FOX{F1,F2,J1}:0.864286670912;STAT1,3:0.823253320646;FOXP3:0.78581082845;ZEB1:0.768194374982;RBPJ:0.708032815631;ZNF143:0.694453936457;YY1:0.691282438175;TLX2:0.661287428503;GCM1,2:0.608062915781;MEF2{A,B,C,D}:0.527200387978;ADNP_IRX_SIX_ZHX:0.501372578105;SREBF1,2:0.485830846445;ATF4:0.464533597342;ATF5_CREB3:0.452762887444;UFEwm:0.422647277164;EP300:0.351704735503;LHX3,4:0.341818360415;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.315491433711;PAX2:0.312710492346;EBF1:0.29316701014;HMX1:0.277215038224;GTF2A1,2:0.269257843915;IKZF1:0.263377663706;FOXN1:0.259902621237;GZF1:0.25598061686;GFI1:0.19915444842;ZIC1..3:0.182415381778;SPZ1:0.17762783964;TBX4,5:0.141384405882;ZNF238:0.105067249802;MYBL2:0.100170981369;FOX{D1,D2}:0.0785252493351;STAT2,4,6:0.0752305379739;AIRE:0.0643146015505;NFE2L1:0.0475261891059;EVI1:0.0135770632246;DMAP1_NCOR{1,2}_SMARC:0.00287150372035;AR:-0.00192741261789;TLX1..3_NFIC{dimer}:-0.0175547144445;IRF7:-0.0366585780576;NFE2L2:-0.0480377992673;PAX3,7:-0.0856404215727;SNAI1..3:-0.0947105875377;TOPORS:-0.114644505705;HOX{A6,A7,B6,B7}:-0.148258854638;ATF6:-0.16633624285;ZNF423:-0.171732411416;HSF1,2:-0.185885014837;PBX1:-0.232913737003;NFATC1..3:-0.304983624585;VSX1,2:-0.312079182473;NFY{A,B,C}:-0.316574364719;bHLH_family:-0.32433315914;NKX3-1:-0.329796389177;T:-0.343737233847;FOX{I1,J2}:-0.345739623996;SP1:-0.353072188934;CEBPA,B_DDIT3:-0.377699563458;NANOG{mouse}:-0.391333361959;PDX1:-0.406053955207;NFE2:-0.438755820768;GATA6:-0.453354851201;FOXA2:-0.476754150901;TFAP2{A,C}:-0.515823143766;SPI1:-0.537605526273;CDX1,2,4:-0.58342433059;IRF1,2:-0.646455645698;NR1H4:-0.710342109168;HNF1A:-0.784389347862;SPIB:-0.839064122796;HIF1A:-0.85806873001;FOSL2:-0.885427508033;BACH2:-0.898708493532;FOXO1,3,4:-0.962967957427;NR5A1,2:-0.991070309108;FOS_FOS{B,L1}_JUN{B,D}:-0.995841676502;RXRA_VDR{dimer}:-1.10365356633;ETS1,2:-1.10903787911;HNF4A_NR2F1,2:-1.11722433201;XCPE1{core}:-1.13116983307;RXR{A,B,G}:-1.1544164509;TP53:-1.16874206194;TEAD1:-1.17398713528;RUNX1..3:-1.21156580222;TAL1_TCF{3,4,12}:-1.22680017336;TBP:-1.25666201714;GLI1..3:-1.25843169835;NFKB1_REL_RELA:-1.27259723609;HOX{A5,B5}:-1.3076611939;POU2F1..3:-1.31016558352;E2F1..5:-1.31084729288;NKX2-2,8:-1.33057849262;PITX1..3:-1.34237949017;ELK1,4_GABP{A,B1}:-1.35528336448;HLF:-1.42266887068;MYB:-1.45484172509;ELF1,2,4:-1.47359357078;ZNF148:-1.48354594408;HES1:-1.57287923997;ESR1:-1.59387718262;ALX4:-1.6272846532;TFAP4:-1.64691864737;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.72423113693;PPARG:-1.74167165186;STAT5{A,B}:-1.80621582645;SRF:-1.87193073221;TFCP2:-1.89487464858;NKX2-1,4:-1.9695746773;EN1,2:-2.37037036744;NR6A1:-2.57077146356
 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10170-103B8;search_select_hide=table117:FF:10170-103B8
 }}

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FF:10170-103B8: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 12:24, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0