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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@SAMD00005791
|accession_numbers=CAGE;DRX008575;DRR009447;DRZ000872;DRZ002257;DRZ012222;DRZ013607
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001044,UBERON:0000033,UBERON:0001007,UBERON:0004121,UBERON:0004119,UBERON:0011216,UBERON:0000466,UBERON:0000062,UBERON:0004111,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0004921,UBERON:0000161,UBERON:0001444,UBERON:0002553,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003293,UBERON:0003294,UBERON:0002365,UBERON:0000464,UBERON:0002530,UBERON:0010047,UBERON:0003408,UBERON:0010317,UBERON:0001555,UBERON:0001004,UBERON:0000153,UBERON:0007811,UBERON:0000165,UBERON:0001041,UBERON:0000166,UBERON:0000167,UBERON:0002330
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001044,UBERON:0000033,UBERON:0001007,UBERON:0004121,UBERON:0004119,UBERON:0011216,UBERON:0000466,UBERON:0000062,UBERON:0004111,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0004921,UBERON:0000161,UBERON:0001444,UBERON:0002553,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003293,UBERON:0003294,UBERON:0002365,UBERON:0000464,UBERON:0002530,UBERON:0010047,UBERON:0003408,UBERON:0010317,UBERON:0001555,UBERON:0001004,UBERON:0000153,UBERON:0007811,UBERON:0000165,UBERON:0001041,UBERON:0000166,UBERON:0000167,UBERON:0002330
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000151,CL:0000066,CL:0002371,CL:0000150,CL:0000154,CL:0000255,CL:0000622,CL:0002076,CL:0002251,CL:0002623
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000151,CL:0000066,CL:0002371,CL:0000150,CL:0000154,CL:0000255,CL:0000622,CL:0002076,CL:0002251,CL:0002623
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|created_by=
|created_by=
|creation_date=
|creation_date=
|datafreeze_phase=1
|data_phase=2
|datafreeze_phase=2
|def=
|def=
|expression_enrichment_score=chr6:1312325..1312340,+!p1@FOXQ1!2.59!617.99!FOXQ1;;chr4:57547454..57547469,-!p1@HOPX!2.46!285.49!HOPX;;chr2:122042770..122042785,-!p1@TFCP2L1!2.20!156.22!TFCP2L1;;chr7:96654133..96654150,-!p1@DLX5!2.13!134.10!DLX5;;chr17:80797886..80797906,-!p1@ZNF750!2.03!106.45!ZNF750;;chr19:46801639..46801699,+!p1@HIF3A!1.99!96.09!HIF3A;;chr11:34642612..34642646,+!p1@EHF!1.97!92.63!EHF;;chr11:113930425..113930471,+!p1@ZBTB16!1.96!128.57!ZBTB16;;chr6:10415484..10415508,-!p3@TFAP2A!1.88!74.66!TFAP2A;;chr6:10412600..10412637,-!p1@TFAP2A!1.87!119.59!TFAP2A;;chr12:54785054..54785072,-!p4@ZNF385A!1.85!78.80!ZNF385A;;chr5:2751762..2751784,-!p1@IRX2!1.85!70.51!IRX2;;chr13:73633131..73633149,+!p1@KLF5!1.82!660.15!KLF5;;chr1:209979467..209979494,-!p1@IRF6!1.79!67.74!IRF6;;chr6:10415276..10415341,-!p2@TFAP2A!1.77!70.51!TFAP2A;;chr15:83953397..83953425,-!p1@BNC1!1.76!64.29!BNC1;;chr16:54320617..54320643,-!p3@IRX3!1.74!68.43!IRX3;;chr19:33793430..33793447,-!p1@CEBPA!1.72!206.00!CEBPA;;chr12:54785074..54785122,-!p2@ZNF385A!1.72!78.11!ZNF385A;;chr20:39317868..39317884,-!p1@MAFB!1.70!552.32!MAFB;;chr5:134369879..134369898,-!p2@PITX1!1.70!49.08!PITX1;;chr5:2751785..2751808,-!p2@IRX2!1.61!40.09!IRX2;;chr3:189507432..189507459,+!p1@TP63!1.61!40.09!TP63;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.61!40.09!ZBED1;;chr20:51588873..51588953,+!p1@TSHZ2!1.59!49.77!TSHZ2;;chrX:106960285..106960299,-!p1@TSC22D3!1.58!931.13!TSC22D3;;chr11:113930401..113930422,+!p3@ZBTB16!1.58!37.33!ZBTB16;;chr15:101069113..101069169,-!p1@CERS3!1.55!34.56!CERS3;;chr11:113930291..113930339,+!p2@ZBTB16!1.54!53.92!ZBTB16;;chr16:54320646..54320672,-!p2@IRX3!1.54!50.46!IRX3;;chr5:134369905..134369972,-!p1@PITX1!1.52!49.08!PITX1;;chr16:86600426..86600441,+!p1@FOXC2!1.51!75.35!FOXC2;;chrX:107019163..107019179,-!p7@TSC22D3!1.51!35.95!TSC22D3;;chr5:3595961..3595975,+!p3@IRX1!1.51!31.11!IRX1;;chr5:3595977..3595999,+!p1@IRX1!1.49!29.72!IRX1;;chr13:41240717..41240735,-!p2@FOXO1!1.48!190.10!FOXO1;;chr17:7492684..7492778,-!p2@SOX15!1.48!60.83!SOX15;;chr1:6479968..6479986,-!p1@HES2!1.47!28.34!HES2;;chr5:3595934..3595957,+!p2@IRX1!1.45!26.96!IRX1;;chr19:45908292..45908374,-!p1@PPP1R13L!1.40!205.30!PPP1R13L;;chr11:65554528..65554546,+!p1@OVOL1!1.39!23.50!OVOL1;;chr14:61116183..61116208,-!p1@SIX1!1.38!85.72!SIX1;;chr6:10412576..10412599,-!p5@TFAP2A!1.38!22.81!TFAP2A;;chr2:43453734..43453751,-!p1@ZFP36L2!1.36!2221.02!ZFP36L2;;chr7:64126535..64126559,+!p2@ZNF107!1.36!46.31!ZNF107;;chr14:37131058..37131139,+!p1@PAX9!1.35!21.43!PAX9;;chr2:10091815..10091864,+!p1@GRHL1!1.34!27.65!GRHL1;;chr18:45935720..45935772,-!p1@ZBTB7C!1.34!20.74!ZBTB7C;;chr1:61548225..61548299,+!p1@NFIA!1.32!251.62!NFIA;;chrX:85403445..85403479,+!p2@DACH2!1.32!20.05!DACH2;;chr7:19157248..19157268,-!p1@TWIST1!1.31!53.23!TWIST1;;chr1:24645921..24645973,+!p2@GRHL3!1.29!18.66!GRHL3;;chr8:22550982..22550999,-!p1@EGR3!1.28!50.46!EGR3;;chr16:54320675..54320715,-!p1@IRX3!1.27!37.33!IRX3;;chr16:54320101..54320125,-!p4@IRX3!1.26!24.19!IRX3;;chr1:209979411..209979433,-!p2@IRF6!1.26!17.28!IRF6;;chr6:106534192..106534224,+!p1@PRDM1!1.25!47.01!PRDM1;;chr7:64342913..64342935,+!p2@ZNF273!1.25!16.59!ZNF273;;chr7:96654026..96654061,-!p2@DLX5!1.25!16.59!DLX5;;chr2:45236540..45236577,-!p1@SIX2!1.25!16.59!SIX2;;chr12:53625966..53626012,-!p2@RARG!1.24!42.86!RARG;;chrX:66763856..66763896,+!p1@AR!1.24!23.50!AR;;chr14:75745523..75745537,+!p1@FOS!1.23!1844.28!FOS;;chr11:120110863..120110908,+!p2@POU2F3!1.23!15.90!POU2F3;;chr5:137801160..137801176,+!p1@EGR1!1.21!1494.50!EGR1;;chr2:66662281..66662308,+!p1@MEIS1!1.21!51.84!MEIS1;;chr20:55204351..55204377,+!p1@TFAP2C!1.21!19.36!TFAP2C;;chr8:49833948..49833973,-!p2@SNAI2!1.18!88.48!SNAI2;;chr6:106534230..106534254,+!p2@PRDM1!1.18!35.25!PRDM1;;chr12:125003087..125003141,-!p4@NCOR2!1.18!17.97!NCOR2;;chr13:41240737..41240787,-!p1@FOXO1!1.17!163.14!FOXO1;;chr1:40367668..40367684,-!p2@MYCL1!1.17!13.83!MYCL1;;chr8:49833978..49833996,-!p1@SNAI2!1.16!275.81!SNAI2;;chr1:10856639..10856662,-!p2@CASZ1!1.15!13.13!CASZ1;;chr10:8096772..8096787,+!p2@GATA3!1.14!15.21!GATA3;;chr9:14314566..14314618,-!p1@NFIB!1.13!147.24!NFIB;;chrX:107018969..107019024,-!p6@TSC22D3!1.13!17.28!TSC22D3;;chr17:26833339..26833378,+!p1@FOXN1!1.13!12.44!FOXN1;;chr9:14314131..14314147,-!p2@NFIB!1.11!65.67!NFIB;;chr11:113930355..113930366,+!p5@ZBTB16!1.11!11.75!ZBTB16;;chr19:9811347..9811351,-!p1@ZNF812!1.11!11.75!ZNF812;;chr2:172967621..172967637,-!p1@DLX2!1.10!31.11!DLX2;;chr9:88969303..88969335,-!p1@ZCCHC6!1.09!105.07!ZCCHC6;;chr2:60780753..60780800,-!p1@BCL11A!1.09!55.30!BCL11A;;chr11:45202580..45202606,+!p@chr11:45202580..45202606,+!1.09!14.52!PRDM11;;chr2:66662249..66662267,+!p2@MEIS1!1.08!42.86!MEIS1;;chr1:151804244..151804310,-!p1@RORC!1.08!11.06!RORC;;chr1:24645832..24645853,+!p1@GRHL3!1.08!11.06!GRHL3;;chr10:8096631..8096660,+!p1@GATA3!1.07!13.13!GATA3;;chr9:110252035..110252057,-!p1@KLF4!1.06!167.98!KLF4;;chr6:108881012..108881034,+!p3@FOXO3!1.06!38.02!FOXO3;;chr16:54320127..54320148,-!p6@IRX3!1.06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|expression_enrichment_score=chr6:1312325..1312340,+!p1@FOXQ1!2.59!617.99!FOXQ1;;chr4:57547454..57547469,-!p1@HOPX!2.46!285.49!HOPX;;chr2:122042770..122042785,-!p1@TFCP2L1!2.20!156.22!TFCP2L1;;chr7:96654133..96654150,-!p1@DLX5!2.13!134.10!DLX5;;chr17:80797886..80797906,-!p1@ZNF750!2.03!106.45!ZNF750;;chr19:46801639..46801699,+!p1@HIF3A!1.99!96.09!HIF3A;;chr11:34642612..34642646,+!p1@EHF!1.97!92.63!EHF;;chr11:113930425..113930471,+!p1@ZBTB16!1.96!128.57!ZBTB16;;chr6:10415484..10415508,-!p3@TFAP2A!1.88!74.66!TFAP2A;;chr6:10412600..10412637,-!p1@TFAP2A!1.87!119.59!TFAP2A;;chr12:54785054..54785072,-!p4@ZNF385A!1.85!78.80!ZNF385A;;chr5:2751762..2751784,-!p1@IRX2!1.85!70.51!IRX2;;chr13:73633131..73633149,+!p1@KLF5!1.82!660.15!KLF5;;chr1:209979467..209979494,-!p1@IRF6!1.79!67.74!IRF6;;chr6:10415276..10415341,-!p2@TFAP2A!1.77!70.51!TFAP2A;;chr15:83953397..83953425,-!p1@BNC1!1.76!64.29!BNC1;;chr16:54320617..54320643,-!p3@IRX3!1.74!68.43!IRX3;;chr19:33793430..33793447,-!p1@CEBPA!1.72!206.00!CEBPA;;chr12:54785074..54785122,-!p2@ZNF385A!1.72!78.11!ZNF385A;;chr20:39317868..39317884,-!p1@MAFB!1.70!552.32!MAFB;;chr5:134369879..134369898,-!p2@PITX1!1.70!49.08!PITX1;;chr5:2751785..2751808,-!p2@IRX2!1.61!40.09!IRX2;;chr3:189507432..189507459,+!p1@TP63!1.61!40.09!TP63;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.61!40.09!ZBED1;;chr20:51588873..51588953,+!p1@TSHZ2!1.59!49.77!TSHZ2;;chrX:106960285..106960299,-!p1@TSC22D3!1.58!931.13!TSC22D3;;chr11:113930401..113930422,+!p3@ZBTB16!1.58!37.33!ZBTB16;;chr15:101069113..101069169,-!p1@CERS3!1.55!34.56!CERS3;;chr11:113930291..113930339,+!p2@ZBTB16!1.54!53.92!ZBTB16;;chr16:54320646..54320672,-!p2@IRX3!1.54!50.46!IRX3;;chr5:134369905..134369972,-!p1@PITX1!1.52!49.08!PITX1;;chr16:86600426..86600441,+!p1@FOXC2!1.51!75.35!FOXC2;;chrX:107019163..107019179,-!p7@TSC22D3!1.51!35.95!TSC22D3;;chr5:3595961..3595975,+!p3@IRX1!1.51!31.11!IRX1;;chr5:3595977..3595999,+!p1@IRX1!1.49!29.72!IRX1;;chr13:41240717..41240735,-!p2@FOXO1!1.48!190.10!FOXO1;;chr17:7492684..7492778,-!p2@SOX15!1.48!60.83!SOX15;;chr1:6479968..6479986,-!p1@HES2!1.47!28.34!HES2;;chr5:3595934..3595957,+!p2@IRX1!1.45!26.96!IRX1;;chr19:45908292..45908374,-!p1@PPP1R13L!1.40!205.30!PPP1R13L;;chr11:65554528..65554546,+!p1@OVOL1!1.39!23.50!OVOL1;;chr14:61116183..61116208,-!p1@SIX1!1.38!85.72!SIX1;;chr6:10412576..10412599,-!p5@TFAP2A!1.38!22.81!TFAP2A;;chr2:43453734..43453751,-!p1@ZFP36L2!1.36!2221.02!ZFP36L2;;chr7:64126535..64126559,+!p2@ZNF107!1.36!46.31!ZNF107;;chr14:37131058..37131139,+!p1@PAX9!1.35!21.43!PAX9;;chr2:10091815..10091864,+!p1@GRHL1!1.34!27.65!GRHL1;;chr18:45935720..45935772,-!p1@ZBTB7C!1.34!20.74!ZBTB7C;;chr1:61548225..61548299,+!p1@NFIA!1.32!251.62!NFIA;;chrX:85403445..85403479,+!p2@DACH2!1.32!20.05!DACH2;;chr7:19157248..19157268,-!p1@TWIST1!1.31!53.23!TWIST1;;chr1:24645921..24645973,+!p2@GRHL3!1.29!18.66!GRHL3;;chr8:22550982..22550999,-!p1@EGR3!1.28!50.46!EGR3;;chr16:54320675..54320715,-!p1@IRX3!1.27!37.33!IRX3;;chr16:54320101..54320125,-!p4@IRX3!1.26!24.19!IRX3;;chr1:209979411..209979433,-!p2@IRF6!1.26!17.28!IRF6;;chr6:106534192..106534224,+!p1@PRDM1!1.25!47.01!PRDM1;;chr7:64342913..64342935,+!p2@ZNF273!1.25!16.59!ZNF273;;chr7:96654026..96654061,-!p2@DLX5!1.25!16.59!DLX5;;chr2:45236540..45236577,-!p1@SIX2!1.25!16.59!SIX2;;chr12:53625966..53626012,-!p2@RARG!1.24!42.86!RARG;;chrX:66763856..66763896,+!p1@AR!1.24!23.50!AR;;chr14:75745523..75745537,+!p1@FOS!1.23!1844.28!FOS;;chr11:120110863..120110908,+!p2@POU2F3!1.23!15.90!POU2F3;;chr5:137801160..137801176,+!p1@EGR1!1.21!1494.50!EGR1;;chr2:66662281..66662308,+!p1@MEIS1!1.21!51.84!MEIS1;;chr20:55204351..55204377,+!p1@TFAP2C!1.21!19.36!TFAP2C;;chr8:49833948..49833973,-!p2@SNAI2!1.18!88.48!SNAI2;;chr6:106534230..106534254,+!p2@PRDM1!1.18!35.25!PRDM1;;chr12:125003087..125003141,-!p4@NCOR2!1.18!17.97!NCOR2;;chr13:41240737..41240787,-!p1@FOXO1!1.17!163.14!FOXO1;;chr1:40367668..40367684,-!p2@MYCL1!1.17!13.83!MYCL1;;chr8:49833978..49833996,-!p1@SNAI2!1.16!275.81!SNAI2;;chr1:10856639..10856662,-!p2@CASZ1!1.15!13.13!CASZ1;;chr10:8096772..8096787,+!p2@GATA3!1.14!15.21!GATA3;;chr9:14314566..14314618,-!p1@NFIB!1.13!147.24!NFIB;;chrX:107018969..107019024,-!p6@TSC22D3!1.13!17.28!TSC22D3;;chr17:26833339..26833378,+!p1@FOXN1!1.13!12.44!FOXN1;;chr9:14314131..14314147,-!p2@NFIB!1.11!65.67!NFIB;;chr11:113930355..113930366,+!p5@ZBTB16!1.11!11.75!ZBTB16;;chr19:9811347..9811351,-!p1@ZNF812!1.11!11.75!ZNF812;;chr2:172967621..172967637,-!p1@DLX2!1.10!31.11!DLX2;;chr9:88969303..88969335,-!p1@ZCCHC6!1.09!105.07!ZCCHC6;;chr2:60780753..60780800,-!p1@BCL11A!1.09!55.30!BCL11A;;chr11:45202580..45202606,+!p@chr11:45202580..45202606,+!1.09!14.52!PRDM11;;chr2:66662249..66662267,+!p2@MEIS1!1.08!42.86!MEIS1;;chr1:151804244..151804310,-!p1@RORC!1.08!11.06!RORC;;chr1:24645832..24645853,+!p1@GRHL3!1.08!11.06!GRHL3;;chr10:8096631..8096660,+!p1@GATA3!1.07!13.13!GATA3;;chr9:110252035..110252057,-!p1@KLF4!1.06!167.98!KLF4;;chr6:108881012..108881034,+!p3@FOXO3!1.06!38.02!FOXO3;;chr16:54320127..54320148,-!p6@IRX3!1.06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|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000066;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000151;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000154;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000223;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000622;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002076;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002251;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002623;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000161;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000165;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000166;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001007;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001044;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002365
|ffid_belonging_in_development=CL:0000223
|fonse_cell_line=
|fonse_cell_line=
|fonse_cell_line_closure=
|fonse_cell_line_closure=
Line 37: Line 42:
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/salivary%2520acinar%2520cells%252c%2520donor3.CNhs12812.11773-123I9.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/salivary%2520acinar%2520cells%252c%2520donor3.CNhs12812.11773-123I9.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/salivary%2520acinar%2520cells%252c%2520donor3.CNhs12812.11773-123I9.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/salivary%2520acinar%2520cells%252c%2520donor3.CNhs12812.11773-123I9.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/salivary%2520acinar%2520cells%252c%2520donor3.CNhs12812.11773-123I9.hg38.nobarcode.ctss.bed.gz
|id=FF:11773-123I9
|id=FF:11773-123I9
|is_a=EFO:0002091;;FF:0000278
|is_a=EFO:0002091;;FF:0000278
|is_obsolete=
|is_obsolete=
|library_id=CNhs12812
|library_id_phase_based=2:CNhs12812
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11773
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11773
|name=salivary acinar cells, donor3
|name=salivary acinar cells, donor3
|namespace=FANTOM5
|namespace=FANTOM5
Line 45: Line 61:
|profile_cagescan=,,,
|profile_cagescan=,,,
|profile_hcage=CNhs12812,LSID972,release012,COMPLETED
|profile_hcage=CNhs12812,LSID972,release012,COMPLETED
|profile_rnaseq=,,,
|profile_rnaseq=
|profile_srnaseq=,,,
|profile_srnaseq=,,,
|refex=http://refex.dbcls.jp/genelist.php?lang
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Line 60: Line 79:
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|sample_cell_line=
Line 81: Line 101:
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|top_motifs=NKX2-1,4:2.39102036288;TP53:1.97026812037;TBX4,5:1.96446237573;TBP:1.87904125533;TFAP2{A,C}:1.81456088316;VSX1,2:1.79285558938;FOXO1,3,4:1.72384358136;PDX1:1.51626982239;ONECUT1,2:1.43598276799;SP1:1.41262423754;FOXN1:1.33026717077;SOX5:1.3270956095;BPTF:1.20289107698;MED-1{core}:1.18715645734;MAZ:1.15429214639;HOX{A4,D4}:1.11046197424;EGR1..3:1.07879735773;ZEB1:1.07580048374;SNAI1..3:1.04170016867;RORA:1.00790597006;TLX2:0.97050805003;SMAD1..7,9:0.959546837703;TEAD1:0.959048406442;bHLH_family:0.919272949611;HBP1_HMGB_SSRP1_UBTF:0.886490954537;TFCP2:0.883110879986;AR:0.856815595346;POU6F1:0.836886199689;NKX2-3_NKX2-5:0.794351843108;RBPJ:0.757055007345;ZNF148:0.722440929338;TEF:0.703916243156;CDC5L:0.691197714544;XCPE1{core}:0.675035545919;TFAP2B:0.665222338785;FOX{D1,D2}:0.661894316;HOX{A6,A7,B6,B7}:0.607506546534;ZBTB6:0.577611152051;PAX1,9:0.543693151422;GTF2A1,2:0.538390285201;FOS_FOS{B,L1}_JUN{B,D}:0.518640847538;FOX{F1,F2,J1}:0.496499855049;TLX1..3_NFIC{dimer}:0.492143233969;ZBTB16:0.483625358033;DBP:0.478168158037;PITX1..3:0.439925166629;SOX17:0.435693726995;MTF1:0.430799172056;MAFB:0.398260154428;MYOD1:0.398092060846;FOXM1:0.392526033748;ZNF423:0.375271394715;MYBL2:0.336681769151;NR3C1:0.333347944491;TFDP1:0.330632331268;PPARG:0.328729479287;CEBPA,B_DDIT3:0.32784173389;T:0.326315219952;HIC1:0.304405939201;FOXQ1:0.297969513885;GTF2I:0.286599282497;MYFfamily:0.271598105639;RFX2..5_RFXANK_RFXAP:0.27049015992;BREu{core}:0.267948234333;TGIF1:0.25830777592;TOPORS:0.236454314244;POU1F1:0.207948078176;PATZ1:0.205828820453;EVI1:0.204427328695;MZF1:0.192838928686;PAX2:0.192161124273;POU2F1..3:0.186756568201;NR1H4:0.166258312313;SREBF1,2:0.165456205711;BACH2:0.159088101761;PAX5:0.156571670331;GZF1:0.138014756638;SPZ1:0.11561552717;PAX4:0.100842246157;ZNF384:0.08789958095;NFIL3:0.065946206646;FOSL2:0.0565128391858;NR6A1:0.0466522202154;ADNP_IRX_SIX_ZHX:0.0453463914079;ZNF143:0.0424773218398;REST:0.0393715048769;MTE{core}:0.0353321537581;HAND1,2:0.0195821474859;EP300:0.00711152040163;LMO2:0.00572693444382;ZFP161:-0.00052892540543;ATF4:-0.0235715445581;NHLH1,2:-0.0299900563291;ESRRA:-0.0396742327679;STAT1,3:-0.0428008518256;HLF:-0.050744435827;GFI1:-0.0583171111765;FOXA2:-0.0641334210367;ATF2:-0.064648928436;NRF1:-0.0685053669961;CUX2:-0.0817488791614;ELK1,4_GABP{A,B1}:-0.0933629927554;NFE2:-0.100140020225;CDX1,2,4:-0.107704593845;TAL1_TCF{3,4,12}:-0.119413200119;FOX{I1,J2}:-0.119552794925;SOX2:-0.136369913127;FOXD3:-0.13851256407;STAT5{A,B}:-0.150747571986;LHX3,4:-0.154033348133;HNF1A:-0.157209945406;GLI1..3:-0.171343636137;LEF1_TCF7_TCF7L1,2:-0.184168953186;TFAP4:-0.18626952354;ESR1:-0.186302165547;NFKB1_REL_RELA:-0.187474906408;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.207979722085;NANOG:-0.220809977724;HIF1A:-0.239729441103;GFI1B:-0.24197408429;PRRX1,2:-0.244714984416;FOXL1:-0.245406736281;RFX1:-0.262113901095;HNF4A_NR2F1,2:-0.271653747772;RREB1:-0.277151281072;KLF4:-0.282761439587;MEF2{A,B,C,D}:-0.288096984984;UFEwm:-0.314164530515;ARID5B:-0.320501329879;CREB1:-0.322130301378;NFATC1..3:-0.332273390586;ALX4:-0.337821941426;IKZF1:-0.33856552216;POU5F1:-0.347787658852;SRF:-0.357038540224;AHR_ARNT_ARNT2:-0.369201970507;ATF5_CREB3:-0.373347069232;NKX3-2:-0.401903062395;NKX6-1,2:-0.405188655607;FOXP3:-0.416799337952;IRF7:-0.426584414373;GATA6:-0.427484169038;NFIX:-0.427696481099;ZNF238:-0.434061274201;FOXP1:-0.442124924348;IKZF2:-0.456864920676;GATA4:-0.468030820867;ATF6:-0.5008774198;HMGA1,2:-0.502880925698;HOX{A5,B5}:-0.534722474256;NFE2L2:-0.582295991689;JUN:-0.58418459883;ALX1:-0.618921552226;ETS1,2:-0.648228131143;RUNX1..3:-0.664878545174;ZIC1..3:-0.693933015139;AIRE:-0.697384970942;PRDM1:-0.713183948089;OCT4_SOX2{dimer}:-0.714217515223;HSF1,2:-0.719656240096;SPI1:-0.725436001125;PAX6:-0.737049540762;SOX{8,9,10}:-0.77052670907;NKX3-1:-0.773041603018;IRF1,2:-0.774160506858;SPIB:-0.801453690178;ELF1,2,4:-0.821235072041;NFY{A,B,C}:-0.839874338285;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.843032893158;CRX:-0.866707965843;E2F1..5:-0.871082605512;STAT2,4,6:-0.886510565411;RXR{A,B,G}:-0.958327788955;RXRA_VDR{dimer}:-0.976310091561;GCM1,2:-0.986723946805;EBF1:-1.04772186796;POU3F1..4:-1.05859176945;HES1:-1.1152026276;PAX8:-1.15539297454;YY1:-1.15935950244;DMAP1_NCOR{1,2}_SMARC:-1.15938582468;XBP1:-1.16583175523;PAX3,7:-1.18289262307;NR5A1,2:-1.19070968;MYB:-1.21785623709;NKX2-2,8:-1.29443029124;NANOG{mouse}:-1.29626242675;HMX1:-1.30433281858;NFE2L1:-1.45412354473;PBX1:-1.54208487644;EN1,2:-1.5653278181;HOXA9_MEIS1:-1.71098124429
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11773-123I9;search_select_hide=table117:FF:11773-123I9
}}
}}

Latest revision as of 18:19, 4 June 2020

Name:salivary acinar cells, donor3
Species:Human (Homo sapiens)
Library ID:CNhs12812
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueparotid gland
dev stageNA
sexfemale
age80
cell typesalivary acinar cell
cell lineNA
companyNA
collaborationSwati Pradhan
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-ethanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005791
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs12812 CAGE DRX008575 DRR009447
Accession ID Hg19

Library idBAMCTSS
CNhs12812 DRZ000872 DRZ002257
Accession ID Hg38

Library idBAMCTSS
CNhs12812 DRZ012222 DRZ013607
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.517
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.348
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.178
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.712
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.601
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature1.525
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0.377
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.534
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0.712
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.701
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.667
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12812

Jaspar motifP-value
MA0002.20.00156
MA0003.10.299
MA0004.10.825
MA0006.10.22
MA0007.10.463
MA0009.10.536
MA0014.10.475
MA0017.10.0304
MA0018.20.291
MA0019.10.102
MA0024.10.116
MA0025.10.822
MA0027.10.24
MA0028.10.0945
MA0029.10.137
MA0030.10.0119
MA0031.10.00269
MA0035.20.23
MA0038.10.101
MA0039.20.264
MA0040.10.749
MA0041.10.202
MA0042.10.498
MA0043.10.548
MA0046.10.986
MA0047.20.138
MA0048.10.936
MA0050.11.86221e-9
MA0051.17.41701e-7
MA0052.10.805
MA0055.10.903
MA0057.10.881
MA0058.10.571
MA0059.10.00668
MA0060.10.28
MA0061.10.00378
MA0062.22.64351e-4
MA0065.20.00729
MA0066.10.0257
MA0067.10.948
MA0068.10.122
MA0069.10.59
MA0070.10.763
MA0071.10.26
MA0072.10.67
MA0073.10.583
MA0074.10.774
MA0076.10.0592
MA0077.10.393
MA0078.10.833
MA0079.20.128
MA0080.25.49958e-12
MA0081.11.77215e-4
MA0083.10.732
MA0084.10.633
MA0087.10.577
MA0088.10.0807
MA0090.10.00158
MA0091.10.136
MA0092.10.197
MA0093.10.66
MA0099.20.931
MA0100.10.603
MA0101.10.0417
MA0102.20.298
MA0103.10.0238
MA0104.20.0152
MA0105.12.0927e-4
MA0106.10.00848
MA0107.10.0293
MA0108.26.5966e-6
MA0111.10.495
MA0112.20.00309
MA0113.18.00069e-4
MA0114.10.0542
MA0115.10.31
MA0116.10.00109
MA0117.10.445
MA0119.10.267
MA0122.10.811
MA0124.10.551
MA0125.10.306
MA0131.10.811
MA0135.10.0832
MA0136.17.29902e-10
MA0137.20.175
MA0138.20.0974
MA0139.10.0146
MA0140.10.0987
MA0141.10.0197
MA0142.10.0337
MA0143.10.564
MA0144.10.216
MA0145.10.884
MA0146.10.741
MA0147.10.0105
MA0148.10.0174
MA0149.10.769
MA0150.10.0705
MA0152.10.881
MA0153.10.895
MA0154.10.002
MA0155.10.327
MA0156.11.24873e-8
MA0157.10.308
MA0159.10.0788
MA0160.10.165
MA0162.10.244
MA0163.14.23777e-8
MA0164.10.627
MA0258.10.0273
MA0259.10.056



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12812

Novel motifP-value
10.138
100.0543
1000.19
1010.415
1020.725
1030.349
1040.898
1050.946
1060.339
1070.956
1080.891
1090.366
110.0374
1100.234
1110.398
1120.717
1130.228
1140.156
1150.966
1160.354
1170.32
1180.179
1190.416
120.508
1200.14
1210.935
1220.314
1230.62
1240.00289
1250.143
1260.572
1270.656
1280.622
1290.613
130.449
1300.745
1310.491
1320.598
1330.314
1340.771
1350.00946
1360.661
1370.172
1380.594
1390.214
140.846
1400.548
1410.63
1420.161
1430.0156
1440.104
1450.856
1460.81
1470.613
1480.00743
1490.121
150.0539
1500.634
1510.689
1520.256
1530.691
1540.501
1550.352
1560.262
1570.736
1580.746
1590.0884
160.596
1600.247
1610.89
1620.739
1630.673
1640.261
1650.96
1660.25
1670.88
1680.443
1690.549
170.684
180.111
190.147
20.626
200.468
210.126
220.838
230.62
240.477
250.257
260.433
270.111
280.357
290.124
30.416
300.347
310.896
320.197
330.374
340.374
350.193
360.00393
370.316
380.804
390.758
40.268
400.0463
410.252
420.532
430.304
440.0504
450.574
460.133
470.00144
480.058
490.169
50.201
500.548
510.66
520.233
530.376
540.836
550.164
560.891
570.988
580.267
590.0696
60.0776
600.526
610.269
620.0985
630.978
640.0752
650.855
660.487
670.0392
680.718
690.439
70.31
700.576
710.0365
720.44
730.761
740.0404
750.143
760.617
770.232
780.945
790.0877
80.121
800.279
810.435
820.319
830.313
840.0289
850.945
860.798
870.733
880.87
890.921
90.723
900.401
910.265
920.568
930.948
940.0453
950.887
960.433
970.266
980.806
990.677



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs12812


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000151 (secretory cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000150 (glandular epithelial cell)
0000154 (protein secreting cell)
0000255 (eukaryotic cell)
0000622 (acinar cell)
0002076 (endo-epithelial cell)
0002251 (epithelial cell of alimentary canal)
0002623 (acinar cell of salivary gland)

UBERON: Anatomy
0000468 (multi-cellular organism)
0001044 (saliva-secreting gland)
0000033 (head)
0001007 (digestive system)
0004121 (ectoderm-derived structure)
0004119 (endoderm-derived structure)
0011216 (organ system subdivision)
0000466 (immaterial anatomical entity)
0000062 (organ)
0004111 (anatomical conduit)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0004921 (subdivision of digestive tract)
0000161 (orifice)
0001444 (subdivision of head)
0002553 (anatomical cavity)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003293 (gland of oral region)
0003294 (gland of foregut)
0002365 (exocrine gland)
0000464 (anatomical space)
0002530 (gland)
0010047 (oral gland)
0003408 (gland of gut)
0010317 (germ layer / neural crest derived structure)
0001555 (digestive tract)
0001004 (respiratory system)
0000153 (anterior region of body)
0007811 (craniocervical region)
0000165 (mouth)
0001041 (foregut)
0000166 (oral opening)
0000167 (oral cavity)
0002330 (exocrine system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000278 (human salivary acinar cell sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000223 (endodermal cell)

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