FF:11292-117A5: Difference between revisions
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{{f5samples | {{f5samples | ||
|DRA_sample_Accession=CAGE@SAMD00005201 | |||
|accession_numbers=CAGE;DRX008522;DRR009394;DRZ000819;DRZ002204;DRZ012169;DRZ013554 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0003126,UBERON:0002100,UBERON:0000064,UBERON:0004119,UBERON:0000466,UBERON:0000062,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003103,UBERON:0009569,UBERON:0005178,UBERON:0000072,UBERON:0005177,UBERON:0000464,UBERON:0001005,UBERON:0005181,UBERON:0010317,UBERON:0007196,UBERON:0000065,UBERON:0001558,UBERON:0001004,UBERON:0002224,UBERON:0000915 | |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0003126,UBERON:0002100,UBERON:0000064,UBERON:0004119,UBERON:0000466,UBERON:0000062,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003103,UBERON:0009569,UBERON:0005178,UBERON:0000072,UBERON:0005177,UBERON:0000464,UBERON:0001005,UBERON:0005181,UBERON:0010317,UBERON:0007196,UBERON:0000065,UBERON:0001558,UBERON:0001004,UBERON:0002224,UBERON:0000915 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0002202,CL:0000255,CL:0002076,CL:0002632,CL:0002368,CL:0000307 | |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0002202,CL:0000255,CL:0002076,CL:0002632,CL:0002368,CL:0000307 | ||
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|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|datafreeze_phase= | |data_phase=2 | ||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr17:7493405..7493419,-!p1@SOX15!2.23!170.60!SOX15;;chr3:189507432..189507459,+!p1@TP63!2.15!140.10!TP63;;chr1:209979467..209979494,-!p1@IRF6!2.04!121.72!IRF6;;chr11:34642612..34642646,+!p1@EHF!2.03!106.61!EHF;;chr1:209979411..209979433,-!p2@IRF6!1.82!64.47!IRF6;;chr3:111314186..111314204,-!p1@ZBED2!1.80!62.16!ZBED2;;chr6:34524093..34524135,-!p1@SPDEF!1.67!45.51!SPDEF;;chr6:10415276..10415341,-!p2@TFAP2A!1.66!53.60!TFAP2A;;chr15:83953397..83953425,-!p1@BNC1!1.62!46.38!BNC1;;chr1:6479968..6479986,-!p1@HES2!1.56!34.93!HES2;;chr12:54785074..54785122,-!p2@ZNF385A!1.54!51.58!ZNF385A;;chr6:10412600..10412637,-!p1@TFAP2A!1.52!52.63!TFAP2A;;chr6:34524049..34524089,-!p2@SPDEF!1.49!29.64!SPDEF;;chr5:134369905..134369972,-!p1@PITX1!1.47!43.49!PITX1;;chr17:7492684..7492778,-!p2@SOX15!1.46!57.35!SOX15;;chr8:10588010..10588030,-!p1@SOX7!1.44!26.46!SOX7;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.43!26.17!ZBED1;;chr6:34524025..34524045,-!p3@SPDEF!1.43!25.88!SPDEF;;chr12:54785054..54785072,-!p4@ZNF385A!1.42!28.48!ZNF385A;;chr12:66218255..66218304,+!p3@HMGA2!1.38!60.43!HMGA2;;chr13:73633131..73633149,+!p1@KLF5!1.31!202.64!KLF5;;chr22:19748231..19748317,+!p1@TBX1!1.28!18.19!TBX1;;chr5:134369879..134369898,-!p2@PITX1!1.28!17.90!PITX1;;chr17:80797886..80797906,-!p1@ZNF750!1.24!16.36!ZNF750;;chr3:111314230..111314241,-!p2@ZBED2!1.21!15.30!ZBED2;;chr2:46524897..46524911,+!p2@EPAS1!1.20!41.09!EPAS1;;chr12:66218598..66218645,+!p2@HMGA2!1.17!62.93!HMGA2;;chr20:22565185..22565223,-!p3@FOXA2!1.17!13.95!FOXA2;;chr14:37131058..37131139,+!p1@PAX9!1.17!13.66!PAX9;;chr8:102504651..102504683,+!p1@GRHL2!1.15!13.28!GRHL2;;chr12:27485762..27485776,+!p3@ARNTL2!1.12!32.81!ARNTL2;;chr5:2751762..2751784,-!p1@IRX2!1.12!12.22!IRX2;;chr19:45908292..45908374,-!p1@PPP1R13L!1.10!103.34!PPP1R13L;;chr1:24645832..24645853,+!p1@GRHL3!1.04!10.01!GRHL3;;chr11:34642656..34642667,+!p2@EHF!1.02!9.53!EHF;;chr6:10415484..10415508,-!p3@TFAP2A!1.01!9.24!TFAP2A;;chr6:10412576..10412599,-!p5@TFAP2A!1.00!9.04!TFAP2A;;chr17:8027418..8027432,-!p1@HES7!0.97!8.28!HES7;;chr14:38064429..38064486,-!p1@FOXA1!0.95!7.89!FOXA1;;chr11:34645791..34645836,+!p3@EHF!0.94!7.70!EHF;;chr17:46132044..46132080,+!p4@NFE2L1!0.94!7.70!NFE2L1;;chr11:65667884..65667895,-!p2@FOSL1!0.90!28.19!FOSL1;;chr8:49833948..49833973,-!p2@SNAI2!0.89!44.94!SNAI2;;chr12:66218212..66218244,+!p5@HMGA2!0.89!10.10!HMGA2;;chr20:22564895..22564910,-!p1@FOXA2!0.89!6.83!FOXA2;;chr11:65667846..65667868,-!p1@FOSL1!0.88!182.34!FOSL1;;chr6:10413188..10413249,-!p7@TFAP2A!0.88!6.54!TFAP2A;;chr12:66218836..66218888,+!p1@HMGA2!0.87!63.41!HMGA2;;chr11:65686802..65686818,+!p6@DRAP1!0.85!10.87!DRAP1;;chr2:239756671..239756732,+!p1@TWIST2!0.84!20.11!TWIST2;;chr2:122042770..122042785,-!p1@TFCP2L1!0.84!5.97!TFCP2L1;;chr2:63277948..63277974,+!p1@OTX1!0.84!5.97!OTX1;;chr15:83953373..83953386,-!p2@BNC1!0.83!5.77!BNC1;;chr19:42636586..42636607,-!p1@POU2F2!0.81!15.88!POU2F2;;chr12:66218183..66218209,+!p4@HMGA2!0.81!11.07!HMGA2;;chr1:209979449..209979460,-!p3@IRF6!0.81!5.48!IRF6;;chr20:22565370..22565388,-!p2@FOXA2!0.79!5.20!FOXA2;;chr1:24645921..24645973,+!p2@GRHL3!0.79!5.10!GRHL3;;chr8:128748308..128748324,+!p2@MYC!0.78!151.93!MYC;;chr1:158979792..158979814,+!p2@IFI16!0.78!52.83!IFI16;;chr6:34204672..34204692,+!p1@HMGA1!0.77!606.58!HMGA1;;chr12:66218003..66218018,+!p9@HMGA2!0.77!6.06!HMGA2;;chr6:1312325..1312340,+!p1@FOXQ1!0.76!8.18!FOXQ1;;chr12:66218378..66218401,+!p6@HMGA2!0.76!7.79!HMGA2;;chr3:189507460..189507471,+!p3@TP63!0.76!4.81!TP63;;chr6:106546808..106546833,+!p3@PRDM1!0.75!5.97!PRDM1;;chr8:49833978..49833996,-!p1@SNAI2!0.74!104.02!SNAI2;;chr12:27485785..27485816,+!p1@ARNTL2!0.74!34.93!ARNTL2;;chr4:57547454..57547469,-!p1@HOPX!0.74!4.52!HOPX;;chr14:90085820..90085840,-!p6@FOXN3!0.74!4.52!FOXN3;;chr2:208030647..208030689,-!p1@KLF7!0.73!40.80!KLF7;;chr2:113994526..113994556,-!p3@PAX8!0.72!4.23!PAX8;;chr20:18038521..18038571,-!p1@OVOL2!0.72!4.23!OVOL2;;chr15:101069113..101069169,-!p1@CERS3!0.72!4.23!CERS3;;chr1:37940170..37940190,+!p1@ZC3H12A!0.71!58.21!ZC3H12A;;chr2:70142232..70142251,+!p1@MXD1!0.71!26.08!MXD1;;chr17:41623009..41623053,-!p4@ETV4!0.71!7.02!ETV4;;chr20:55204351..55204377,+!p1@TFAP2C!0.71!5.39!TFAP2C;;chr2:45236540..45236577,-!p1@SIX2!0.71!4.14!SIX2;;chr17:41623692..41623715,-!p1@ETV4!0.70!19.24!ETV4;;chr12:27485823..27485868,+!p2@ARNTL2!0.70!17.99!ARNTL2;;chr11:129245526..129245553,+!p1@BARX2!0.70!4.04!BARX2;;chr11:128392273..128392308,-!p2@ETS1!0.69!18.57!ETS1;;chr9:100615499..100615519,+!p1@FOXE1!0.69!3.95!FOXE1;;chr6:21597765..21597779,+!p2@SOX4!0.67!34.35!SOX4;;chr2:46612334..46612349,+!p6@EPAS1!0.67!5.10!EPAS1;;chr4:57522598..57522664,-!p3@HOPX!0.67!3.66!HOPX;;chr3:141121847..141121868,+!p5@ZBTB38!0.65!5.68!ZBTB38;;chr14:21566731..21566836,-!p1@ZNF219!0.64!42.53!ZNF219;;chr2:46524878..46524891,+!p3@EPAS1!0.64!6.35!EPAS1;;chr14:37051798..37051831,-!p1@NKX2-8!0.64!3.37!NKX2-8;;chr17:46131916..46131952,+!p7@NFE2L1!0.64!3.37!NFE2L1;;chr12:77459306..77459365,-!p1@E2F7!0.63!48.88!E2F7;;chr16:54964740..54964789,+!p1@IRX5!0.63!5.00!IRX5;;chr12:66218443..66218461,+!p8@HMGA2!0.63!4.43!HMGA2;;chr20:50721803..50721857,-!p2@ZFP64!0.61!5.20!ZFP64;;chr20:6748325..6748352,+!p1@BMP2!0.61!4.71!BMP2;;chr11:120107344..120107351,+!p1@POU2F3!0.61!3.85!POU2F3;;chr3:189507523..189507535,+!p5@TP63!0.61!3.08!TP63;;chr5:2751785..2751808,-!p2@IRX2!0.61!3.08!IRX2;;chr6:10415263..10415274,-!p8@TFAP2A!0.61!3.08!TFAP2A;;chr6:10419768..10419819,-!p6@TFAP2A!0.61!3.08!TFAP2A;;chr1:24646263..24646277,+!p4@GRHL3!0.61!3.08!GRHL3;;chr11:47236584..47236679,+!p1@DDB2!0.60!39.35!DDB2;;chr13:41593425..41593480,-!p1@ELF1!0.60!22.71!ELF1;;chr6:126102292..126102329,+!p3@NCOA7!0.60!11.45!NCOA7;;chr5:50679228..50679288,+!p1@ISL1!0.60!2.98!ISL1;;chr1:209979375..209979386,-!p4@IRF6!0.60!2.98!IRF6;;chr5:137804484..137804498,+!p2@EGR1!0.59!13.86!EGR1;;chr12:48298765..48298783,-!p2@VDR!0.59!6.74!VDR;;chr2:10091815..10091864,+!p1@GRHL1!0.59!4.04!GRHL1;;chr11:65554528..65554546,+!p1@OVOL1!0.59!2.89!OVOL1;;chr11:65687362..65687436,+!p3@DRAP1!0.58!15.49!DRAP1;;chr17:41622925..41622976,-!p3@ETV4!0.58!4.62!ETV4;;chr12:53625966..53626012,-!p2@RARG!0.57!8.47!RARG;;chr2:239756739..239756755,+!p2@TWIST2!0.57!5.20!TWIST2;;chr2:60778035..60778060,-!p4@BCL11A!0.57!3.37!BCL11A;;chr1:10856694..10856715,-!p3@CASZ1!0.57!2.69!CASZ1;;chr12:48298785..48298828,-!p1@VDR!0.56!17.03!VDR;;chr14:61116183..61116208,-!p1@SIX1!0.56!12.12!SIX1;;chr12:66218573..66218596,+!p7@HMGA2!0.56!4.23!HMGA2;;chr15:83953694..83953708,-!p4@BNC1!0.56!2.60!BNC1;;chr11:65686732..65686756,+!p2@DRAP1!0.55!13.09!DRAP1;;chr6:10412392..10412409,-!p4@TFAP2A!0.54!2.89!TFAP2A;;chr2:63277978..63277995,+!p2@OTX1!0.54!2.50!OTX1;;chr1:8938709..8938720,-!p3@ENO1!0.53!150.97!ENO1;;chr5:72744594..72744609,-!p1@FOXD1!0.53!13.57!FOXD1;;chr8:128748470..128748487,+!p1@MYC!0.52!333.51!MYC;;chr8:102504979..102505010,+!p2@GRHL2!0.52!2.31!GRHL2;;chr22:24093154..24093183,-!p2@ZNF70!0.52!2.31!ZNF70;;chr6:34204642..34204664,+!p2@HMGA1!0.51!397.88!HMGA1;;chr6:106546786..106546802,+!p6@PRDM1!0.51!2.21!PRDM1;;chr1:50889155..50889173,-!p2@DMRTA2!0.51!2.21!DMRTA2;;chr12:66218420..66218439,+!p12@HMGA2!0.51!2.21!HMGA2;;chr1:8938766..8938774,-!p2@ENO1!0.50!200.24!ENO1;;chr19:45579725..45579743,-!p1@ZNF296!0.50!12.41!ZNF296;;chr12:80084737..80084763,-!p3@PAWR!0.50!10.10!PAWR;;chr2:70167296..70167306,+!p3@MXD1!0.50!3.75!MXD1;;chr8:128747661..128747703,+!p6@MYC!0.50!3.18!MYC;;chr12:27485889..27485900,+!p4@ARNTL2!0.50!2.79!ARNTL2;;chr17:41623075..41623101,-!p9@ETV4!0.50!2.69!ETV4;;chr17:41623259..41623278,-!p7@ETV4!0.50!2.69!ETV4;;chr8:10697329..10697365,-!p2@PINX1,p2@SOX7!0.49!17.90!SOX7;;chr2:169312600..169312606,+!p2@CERS6!0.49!3.75!CERS6;;chr13:73636252..73636307,+!p2@KLF5!0.49!2.60!KLF5;;chr12:66218904..66218913,+!p11@HMGA2!0.49!2.12!HMGA2;;chr22:19746969..19746987,+!p2@TBX1!0.49!2.12!TBX1;;chr5:134369973..134369984,-!p3@PITX1!0.49!2.12!PITX1;;chr20:50722202..50722217,-!p7@ZFP64!0.49!2.12!ZFP64;;chr9:22447422..22447483,+!p1@DMRTA1!0.49!2.12!DMRTA1;;chr1:154975258..154975330,+!p1@ZBTB7B!0.48!9.72!ZBTB7B;;chr16:2059754..2059777,-!p2@ZNF598!0.48!8.95!ZNF598;;chr1:10754477..10754517,-!p1@CASZ1!0.48!3.85!CASZ1;;chr12:66218152..66218174,+!p10@HMGA2!0.48!2.21!HMGA2;;chr4:299227..299272,-!p1@ZNF732!0.48!2.02!ZNF732;;chr3:32023232..32023273,+!p1@ZNF860!0.47!3.08!ZNF860;;chr4:57522166..57522260,-!p2@HOPX!0.47!2.41!HOPX;;chr12:66218469..66218477,+!p16@HMGA2!0.47!1.92!HMGA2;;chr1:37945588..37945604,+!p3@ZC3H12A!0.47!1.92!ZC3H12A;;chr9:2158443..2158481,+!p2@SMARCA2!0.46!6.74!SMARCA2;;chr11:65686952..65686975,+!p5@DRAP1!0.45!13.47!DRAP1;;chr17:41622834..41622883,-!p6@ETV4!0.45!2.41!ETV4;;chr20:48807548..48807572,+!p14@CEBPB!0.45!2.41!CEBPB;;chr1:10856639..10856662,-!p2@CASZ1!0.45!1.83!CASZ1;;chr20:55205825..55205847,+!p2@TFAP2C!0.45!1.83!TFAP2C;;chr2:45236579..45236596,-!p2@SIX2!0.45!1.83!SIX2;;chr15:83953474..83953483,-!p3@BNC1!0.45!1.83!BNC1;;chr17:80797863..80797874,-!p2@ZNF750!0.45!1.83!ZNF750;;chr8:48650715..48650735,-!p1@CEBPD!0.44!323.69!CEBPD;;chr22:29196547..29196563,-!p2@XBP1!0.44!92.76!XBP1;;chr6:34204921..34204939,+!p3@HMGA1!0.44!75.25!HMGA1;;chr5:3595977..3595999,+!p1@IRX1!0.44!1.73!IRX1;;chr8:102504690..102504704,+!p3@GRHL2!0.44!1.73!GRHL2;;chr1:10856665..10856683,-!p4@CASZ1!0.44!1.73!CASZ1;;chr1:50889103..50889145,-!p1@DMRTA2!0.44!1.73!DMRTA2;;chr3:138665969..138665993,-!p2@FOXL2!0.44!1.73!FOXL2;;chr18:3450161..3450183,+!p1@TGIF1!0.43!83.81!TGIF1;;chr11:65687158..65687216,+!p4@DRAP1!0.43!13.47!DRAP1;;chr2:60780753..60780800,-!p1@BCL11A!0.43!11.45!BCL11A;;chr7:148892653..148892729,+!p1@ZNF282!0.42!34.64!ZNF282;;chr17:38256799..38256815,-!p3@NR1D1!0.42!3.56!NR1D1;;chr16:30102849..30102865,-!p2@TBX6!0.42!1.64!TBX6;;chr17:7492979..7492991,-!p5@SOX15!0.42!1.64!SOX15;;chr5:3595934..3595957,+!p2@IRX1!0.42!1.64!IRX1;;chr6:106546731..106546755,+!p5@PRDM1!0.42!1.64!PRDM1;;chr6:41701581..41701613,-!p2@TFEB!0.42!1.64!TFEB;;chr7:97840743..97840786,+!p1@BHLHA15!0.42!1.64!BHLHA15;;chr19:42636625..42636632,-!p2@POU2F2!0.42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| |expression_enrichment_score=chr17:7493405..7493419,-!p1@SOX15!2.23!170.60!SOX15;;chr3:189507432..189507459,+!p1@TP63!2.15!140.10!TP63;;chr1:209979467..209979494,-!p1@IRF6!2.04!121.72!IRF6;;chr11:34642612..34642646,+!p1@EHF!2.03!106.61!EHF;;chr1:209979411..209979433,-!p2@IRF6!1.82!64.47!IRF6;;chr3:111314186..111314204,-!p1@ZBED2!1.80!62.16!ZBED2;;chr6:34524093..34524135,-!p1@SPDEF!1.67!45.51!SPDEF;;chr6:10415276..10415341,-!p2@TFAP2A!1.66!53.60!TFAP2A;;chr15:83953397..83953425,-!p1@BNC1!1.62!46.38!BNC1;;chr1:6479968..6479986,-!p1@HES2!1.56!34.93!HES2;;chr12:54785074..54785122,-!p2@ZNF385A!1.54!51.58!ZNF385A;;chr6:10412600..10412637,-!p1@TFAP2A!1.52!52.63!TFAP2A;;chr6:34524049..34524089,-!p2@SPDEF!1.49!29.64!SPDEF;;chr5:134369905..134369972,-!p1@PITX1!1.47!43.49!PITX1;;chr17:7492684..7492778,-!p2@SOX15!1.46!57.35!SOX15;;chr8:10588010..10588030,-!p1@SOX7!1.44!26.46!SOX7;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.43!26.17!ZBED1;;chr6:34524025..34524045,-!p3@SPDEF!1.43!25.88!SPDEF;;chr12:54785054..54785072,-!p4@ZNF385A!1.42!28.48!ZNF385A;;chr12:66218255..66218304,+!p3@HMGA2!1.38!60.43!HMGA2;;chr13:73633131..73633149,+!p1@KLF5!1.31!202.64!KLF5;;chr22:19748231..19748317,+!p1@TBX1!1.28!18.19!TBX1;;chr5:134369879..134369898,-!p2@PITX1!1.28!17.90!PITX1;;chr17:80797886..80797906,-!p1@ZNF750!1.24!16.36!ZNF750;;chr3:111314230..111314241,-!p2@ZBED2!1.21!15.30!ZBED2;;chr2:46524897..46524911,+!p2@EPAS1!1.20!41.09!EPAS1;;chr12:66218598..66218645,+!p2@HMGA2!1.17!62.93!HMGA2;;chr20:22565185..22565223,-!p3@FOXA2!1.17!13.95!FOXA2;;chr14:37131058..37131139,+!p1@PAX9!1.17!13.66!PAX9;;chr8:102504651..102504683,+!p1@GRHL2!1.15!13.28!GRHL2;;chr12:27485762..27485776,+!p3@ARNTL2!1.12!32.81!ARNTL2;;chr5:2751762..2751784,-!p1@IRX2!1.12!12.22!IRX2;;chr19:45908292..45908374,-!p1@PPP1R13L!1.10!103.34!PPP1R13L;;chr1:24645832..24645853,+!p1@GRHL3!1.04!10.01!GRHL3;;chr11:34642656..34642667,+!p2@EHF!1.02!9.53!EHF;;chr6:10415484..10415508,-!p3@TFAP2A!1.01!9.24!TFAP2A;;chr6:10412576..10412599,-!p5@TFAP2A!1.00!9.04!TFAP2A;;chr17:8027418..8027432,-!p1@HES7!0.97!8.28!HES7;;chr14:38064429..38064486,-!p1@FOXA1!0.95!7.89!FOXA1;;chr11:34645791..34645836,+!p3@EHF!0.94!7.70!EHF;;chr17:46132044..46132080,+!p4@NFE2L1!0.94!7.70!NFE2L1;;chr11:65667884..65667895,-!p2@FOSL1!0.90!28.19!FOSL1;;chr8:49833948..49833973,-!p2@SNAI2!0.89!44.94!SNAI2;;chr12:66218212..66218244,+!p5@HMGA2!0.89!10.10!HMGA2;;chr20:22564895..22564910,-!p1@FOXA2!0.89!6.83!FOXA2;;chr11:65667846..65667868,-!p1@FOSL1!0.88!182.34!FOSL1;;chr6:10413188..10413249,-!p7@TFAP2A!0.88!6.54!TFAP2A;;chr12:66218836..66218888,+!p1@HMGA2!0.87!63.41!HMGA2;;chr11:65686802..65686818,+!p6@DRAP1!0.85!10.87!DRAP1;;chr2:239756671..239756732,+!p1@TWIST2!0.84!20.11!TWIST2;;chr2:122042770..122042785,-!p1@TFCP2L1!0.84!5.97!TFCP2L1;;chr2:63277948..63277974,+!p1@OTX1!0.84!5.97!OTX1;;chr15:83953373..83953386,-!p2@BNC1!0.83!5.77!BNC1;;chr19:42636586..42636607,-!p1@POU2F2!0.81!15.88!POU2F2;;chr12:66218183..66218209,+!p4@HMGA2!0.81!11.07!HMGA2;;chr1:209979449..209979460,-!p3@IRF6!0.81!5.48!IRF6;;chr20:22565370..22565388,-!p2@FOXA2!0.79!5.20!FOXA2;;chr1:24645921..24645973,+!p2@GRHL3!0.79!5.10!GRHL3;;chr8:128748308..128748324,+!p2@MYC!0.78!151.93!MYC;;chr1:158979792..158979814,+!p2@IFI16!0.78!52.83!IFI16;;chr6:34204672..34204692,+!p1@HMGA1!0.77!606.58!HMGA1;;chr12:66218003..66218018,+!p9@HMGA2!0.77!6.06!HMGA2;;chr6:1312325..1312340,+!p1@FOXQ1!0.76!8.18!FOXQ1;;chr12:66218378..66218401,+!p6@HMGA2!0.76!7.79!HMGA2;;chr3:189507460..189507471,+!p3@TP63!0.76!4.81!TP63;;chr6:106546808..106546833,+!p3@PRDM1!0.75!5.97!PRDM1;;chr8:49833978..49833996,-!p1@SNAI2!0.74!104.02!SNAI2;;chr12:27485785..27485816,+!p1@ARNTL2!0.74!34.93!ARNTL2;;chr4:57547454..57547469,-!p1@HOPX!0.74!4.52!HOPX;;chr14:90085820..90085840,-!p6@FOXN3!0.74!4.52!FOXN3;;chr2:208030647..208030689,-!p1@KLF7!0.73!40.80!KLF7;;chr2:113994526..113994556,-!p3@PAX8!0.72!4.23!PAX8;;chr20:18038521..18038571,-!p1@OVOL2!0.72!4.23!OVOL2;;chr15:101069113..101069169,-!p1@CERS3!0.72!4.23!CERS3;;chr1:37940170..37940190,+!p1@ZC3H12A!0.71!58.21!ZC3H12A;;chr2:70142232..70142251,+!p1@MXD1!0.71!26.08!MXD1;;chr17:41623009..41623053,-!p4@ETV4!0.71!7.02!ETV4;;chr20:55204351..55204377,+!p1@TFAP2C!0.71!5.39!TFAP2C;;chr2:45236540..45236577,-!p1@SIX2!0.71!4.14!SIX2;;chr17:41623692..41623715,-!p1@ETV4!0.70!19.24!ETV4;;chr12:27485823..27485868,+!p2@ARNTL2!0.70!17.99!ARNTL2;;chr11:129245526..129245553,+!p1@BARX2!0.70!4.04!BARX2;;chr11:128392273..128392308,-!p2@ETS1!0.69!18.57!ETS1;;chr9:100615499..100615519,+!p1@FOXE1!0.69!3.95!FOXE1;;chr6:21597765..21597779,+!p2@SOX4!0.67!34.35!SOX4;;chr2:46612334..46612349,+!p6@EPAS1!0.67!5.10!EPAS1;;chr4:57522598..57522664,-!p3@HOPX!0.67!3.66!HOPX;;chr3:141121847..141121868,+!p5@ZBTB38!0.65!5.68!ZBTB38;;chr14:21566731..21566836,-!p1@ZNF219!0.64!42.53!ZNF219;;chr2:46524878..46524891,+!p3@EPAS1!0.64!6.35!EPAS1;;chr14:37051798..37051831,-!p1@NKX2-8!0.64!3.37!NKX2-8;;chr17:46131916..46131952,+!p7@NFE2L1!0.64!3.37!NFE2L1;;chr12:77459306..77459365,-!p1@E2F7!0.63!48.88!E2F7;;chr16:54964740..54964789,+!p1@IRX5!0.63!5.00!IRX5;;chr12:66218443..66218461,+!p8@HMGA2!0.63!4.43!HMGA2;;chr20:50721803..50721857,-!p2@ZFP64!0.61!5.20!ZFP64;;chr20:6748325..6748352,+!p1@BMP2!0.61!4.71!BMP2;;chr11:120107344..120107351,+!p1@POU2F3!0.61!3.85!POU2F3;;chr3:189507523..189507535,+!p5@TP63!0.61!3.08!TP63;;chr5:2751785..2751808,-!p2@IRX2!0.61!3.08!IRX2;;chr6:10415263..10415274,-!p8@TFAP2A!0.61!3.08!TFAP2A;;chr6:10419768..10419819,-!p6@TFAP2A!0.61!3.08!TFAP2A;;chr1:24646263..24646277,+!p4@GRHL3!0.61!3.08!GRHL3;;chr11:47236584..47236679,+!p1@DDB2!0.60!39.35!DDB2;;chr13:41593425..41593480,-!p1@ELF1!0.60!22.71!ELF1;;chr6:126102292..126102329,+!p3@NCOA7!0.60!11.45!NCOA7;;chr5:50679228..50679288,+!p1@ISL1!0.60!2.98!ISL1;;chr1:209979375..209979386,-!p4@IRF6!0.60!2.98!IRF6;;chr5:137804484..137804498,+!p2@EGR1!0.59!13.86!EGR1;;chr12:48298765..48298783,-!p2@VDR!0.59!6.74!VDR;;chr2:10091815..10091864,+!p1@GRHL1!0.59!4.04!GRHL1;;chr11:65554528..65554546,+!p1@OVOL1!0.59!2.89!OVOL1;;chr11:65687362..65687436,+!p3@DRAP1!0.58!15.49!DRAP1;;chr17:41622925..41622976,-!p3@ETV4!0.58!4.62!ETV4;;chr12:53625966..53626012,-!p2@RARG!0.57!8.47!RARG;;chr2:239756739..239756755,+!p2@TWIST2!0.57!5.20!TWIST2;;chr2:60778035..60778060,-!p4@BCL11A!0.57!3.37!BCL11A;;chr1:10856694..10856715,-!p3@CASZ1!0.57!2.69!CASZ1;;chr12:48298785..48298828,-!p1@VDR!0.56!17.03!VDR;;chr14:61116183..61116208,-!p1@SIX1!0.56!12.12!SIX1;;chr12:66218573..66218596,+!p7@HMGA2!0.56!4.23!HMGA2;;chr15:83953694..83953708,-!p4@BNC1!0.56!2.60!BNC1;;chr11:65686732..65686756,+!p2@DRAP1!0.55!13.09!DRAP1;;chr6:10412392..10412409,-!p4@TFAP2A!0.54!2.89!TFAP2A;;chr2:63277978..63277995,+!p2@OTX1!0.54!2.50!OTX1;;chr1:8938709..8938720,-!p3@ENO1!0.53!150.97!ENO1;;chr5:72744594..72744609,-!p1@FOXD1!0.53!13.57!FOXD1;;chr8:128748470..128748487,+!p1@MYC!0.52!333.51!MYC;;chr8:102504979..102505010,+!p2@GRHL2!0.52!2.31!GRHL2;;chr22:24093154..24093183,-!p2@ZNF70!0.52!2.31!ZNF70;;chr6:34204642..34204664,+!p2@HMGA1!0.51!397.88!HMGA1;;chr6:106546786..106546802,+!p6@PRDM1!0.51!2.21!PRDM1;;chr1:50889155..50889173,-!p2@DMRTA2!0.51!2.21!DMRTA2;;chr12:66218420..66218439,+!p12@HMGA2!0.51!2.21!HMGA2;;chr1:8938766..8938774,-!p2@ENO1!0.50!200.24!ENO1;;chr19:45579725..45579743,-!p1@ZNF296!0.50!12.41!ZNF296;;chr12:80084737..80084763,-!p3@PAWR!0.50!10.10!PAWR;;chr2:70167296..70167306,+!p3@MXD1!0.50!3.75!MXD1;;chr8:128747661..128747703,+!p6@MYC!0.50!3.18!MYC;;chr12:27485889..27485900,+!p4@ARNTL2!0.50!2.79!ARNTL2;;chr17:41623075..41623101,-!p9@ETV4!0.50!2.69!ETV4;;chr17:41623259..41623278,-!p7@ETV4!0.50!2.69!ETV4;;chr8:10697329..10697365,-!p2@PINX1,p2@SOX7!0.49!17.90!SOX7;;chr2:169312600..169312606,+!p2@CERS6!0.49!3.75!CERS6;;chr13:73636252..73636307,+!p2@KLF5!0.49!2.60!KLF5;;chr12:66218904..66218913,+!p11@HMGA2!0.49!2.12!HMGA2;;chr22:19746969..19746987,+!p2@TBX1!0.49!2.12!TBX1;;chr5:134369973..134369984,-!p3@PITX1!0.49!2.12!PITX1;;chr20:50722202..50722217,-!p7@ZFP64!0.49!2.12!ZFP64;;chr9:22447422..22447483,+!p1@DMRTA1!0.49!2.12!DMRTA1;;chr1:154975258..154975330,+!p1@ZBTB7B!0.48!9.72!ZBTB7B;;chr16:2059754..2059777,-!p2@ZNF598!0.48!8.95!ZNF598;;chr1:10754477..10754517,-!p1@CASZ1!0.48!3.85!CASZ1;;chr12:66218152..66218174,+!p10@HMGA2!0.48!2.21!HMGA2;;chr4:299227..299272,-!p1@ZNF732!0.48!2.02!ZNF732;;chr3:32023232..32023273,+!p1@ZNF860!0.47!3.08!ZNF860;;chr4:57522166..57522260,-!p2@HOPX!0.47!2.41!HOPX;;chr12:66218469..66218477,+!p16@HMGA2!0.47!1.92!HMGA2;;chr1:37945588..37945604,+!p3@ZC3H12A!0.47!1.92!ZC3H12A;;chr9:2158443..2158481,+!p2@SMARCA2!0.46!6.74!SMARCA2;;chr11:65686952..65686975,+!p5@DRAP1!0.45!13.47!DRAP1;;chr17:41622834..41622883,-!p6@ETV4!0.45!2.41!ETV4;;chr20:48807548..48807572,+!p14@CEBPB!0.45!2.41!CEBPB;;chr1:10856639..10856662,-!p2@CASZ1!0.45!1.83!CASZ1;;chr20:55205825..55205847,+!p2@TFAP2C!0.45!1.83!TFAP2C;;chr2:45236579..45236596,-!p2@SIX2!0.45!1.83!SIX2;;chr15:83953474..83953483,-!p3@BNC1!0.45!1.83!BNC1;;chr17:80797863..80797874,-!p2@ZNF750!0.45!1.83!ZNF750;;chr8:48650715..48650735,-!p1@CEBPD!0.44!323.69!CEBPD;;chr22:29196547..29196563,-!p2@XBP1!0.44!92.76!XBP1;;chr6:34204921..34204939,+!p3@HMGA1!0.44!75.25!HMGA1;;chr5:3595977..3595999,+!p1@IRX1!0.44!1.73!IRX1;;chr8:102504690..102504704,+!p3@GRHL2!0.44!1.73!GRHL2;;chr1:10856665..10856683,-!p4@CASZ1!0.44!1.73!CASZ1;;chr1:50889103..50889145,-!p1@DMRTA2!0.44!1.73!DMRTA2;;chr3:138665969..138665993,-!p2@FOXL2!0.44!1.73!FOXL2;;chr18:3450161..3450183,+!p1@TGIF1!0.43!83.81!TGIF1;;chr11:65687158..65687216,+!p4@DRAP1!0.43!13.47!DRAP1;;chr2:60780753..60780800,-!p1@BCL11A!0.43!11.45!BCL11A;;chr7:148892653..148892729,+!p1@ZNF282!0.42!34.64!ZNF282;;chr17:38256799..38256815,-!p3@NR1D1!0.42!3.56!NR1D1;;chr16:30102849..30102865,-!p2@TBX6!0.42!1.64!TBX6;;chr17:7492979..7492991,-!p5@SOX15!0.42!1.64!SOX15;;chr5:3595934..3595957,+!p2@IRX1!0.42!1.64!IRX1;;chr6:106546731..106546755,+!p5@PRDM1!0.42!1.64!PRDM1;;chr6:41701581..41701613,-!p2@TFEB!0.42!1.64!TFEB;;chr7:97840743..97840786,+!p1@BHLHA15!0.42!1.64!BHLHA15;;chr19:42636625..42636632,-!p2@POU2F2!0.42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| ||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000066;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000223;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000307;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002076;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002368;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002632;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000065;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001558;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0003126;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0005181;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0008947 | |||
|ffid_belonging_in_development=CL:0000223,CL:0000377 | |ffid_belonging_in_development=CL:0000223,CL:0000377 | ||
|fonse_cell_line= | |fonse_cell_line= | ||
Line 38: | Line 42: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Tracheal%2520Epithelial%2520Cells%252c%2520donor1.CNhs11092.11292-117A5.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Tracheal%2520Epithelial%2520Cells%252c%2520donor1.CNhs11092.11292-117A5.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Tracheal%2520Epithelial%2520Cells%252c%2520donor1.CNhs11092.11292-117A5.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Tracheal%2520Epithelial%2520Cells%252c%2520donor1.CNhs11092.11292-117A5.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Tracheal%2520Epithelial%2520Cells%252c%2520donor1.CNhs11092.11292-117A5.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11292-117A5 | |id=FF:11292-117A5 | ||
|is_a=EFO:0002091;;FF:0000189 | |is_a=EFO:0002091;;FF:0000189 | ||
|is_obsolete= | |is_obsolete= | ||
|library_id=CNhs11092 | |||
|library_id_phase_based=2:CNhs11092 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11292 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11292 | |||
|name=Tracheal Epithelial Cells, donor1 | |name=Tracheal Epithelial Cells, donor1 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
Line 46: | Line 61: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11092,LSID724,release008,COMPLETED | |profile_hcage=CNhs11092,LSID724,release008,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=SRhi10009,,, | |profile_srnaseq=SRhi10009,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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| |||
|rna_box=117 | |rna_box=117 | ||
|rna_catalog_number=CA504-R10a | |rna_catalog_number=CA504-R10a | ||
Line 61: | Line 79: | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|sample_age=50 | |sample_age=50 | ||
|sample_category=primary cells | |||
|sample_cell_catalog=N/A | |sample_cell_catalog=N/A | ||
|sample_cell_line= | |sample_cell_line= | ||
Line 82: | Line 101: | ||
|top_motifs=TP53:2.28453204493;VSX1,2:2.03901056338;TBX4,5:1.98192688553;ZEB1:1.78424128607;SNAI1..3:1.53891665673;ADNP_IRX_SIX_ZHX:1.52800332627;ZNF148:1.15953525421;PDX1:1.01010526454;PPARG:0.960405317757;HAND1,2:0.955069041649;ONECUT1,2:0.929596372815;NKX2-3_NKX2-5:0.916386828865;POU1F1:0.908066260652;NKX2-2,8:0.858240534674;CRX:0.826553537269;CEBPA,B_DDIT3:0.822269940481;MYOD1:0.819947761289;TEF:0.797366397322;POU2F1..3:0.773201746709;NANOG:0.772771601486;NR5A1,2:0.767770340998;FOXQ1:0.74055630566;TBP:0.697097875868;TEAD1:0.691835214149;CDC5L:0.63137241934;FOS_FOS{B,L1}_JUN{B,D}:0.627751821163;ELK1,4_GABP{A,B1}:0.591729252039;XCPE1{core}:0.552428666826;NFIL3:0.541450100199;ZNF423:0.498647318878;BACH2:0.475901285801;ARID5B:0.472051470176;bHLH_family:0.465185151435;MTF1:0.462731035607;TFCP2:0.462595241503;POU5F1:0.461328982087;FOXM1:0.452829003229;GTF2A1,2:0.427594396914;FOXL1:0.417260628115;LMO2:0.407099827175;STAT5{A,B}:0.394696872144;SP1:0.392889750754;EBF1:0.383309978152;FOSL2:0.379921435141;IKZF1:0.375859297935;NKX3-2:0.305334892822;FOX{I1,J2}:0.294867340747;PBX1:0.247287961454;GLI1..3:0.244844229991;LHX3,4:0.228150082864;HLF:0.222816029312;LEF1_TCF7_TCF7L1,2:0.202998574617;RBPJ:0.197765440597;ELF1,2,4:0.188861933778;ZNF238:0.160835604587;HOX{A4,D4}:0.159379706138;PAX4:0.146895955446;GFI1B:0.136994156459;AR:0.130683010846;POU6F1:0.128330973733;PAX1,9:0.126674200882;TLX1..3_NFIC{dimer}:0.122316925567;NFE2:0.113762101653;ZNF143:0.103284529377;TFAP2{A,C}:0.0879571106675;HES1:0.0795885347024;SOX17:0.0705342246447;NFY{A,B,C}:0.0582341635752;YY1:0.0395556112236;GZF1:0.0381670131354;PAX8:0.0270160830142;TLX2:0.0219529812157;HIF1A:0.0015845351419;HOX{A5,B5}:0.000175581106412;OCT4_SOX2{dimer}:-0.0353556714692;FOX{F1,F2,J1}:-0.0500624296;E2F1..5:-0.063857255428;SMAD1..7,9:-0.070822317421;SOX{8,9,10}:-0.0743343221048;ETS1,2:-0.0836543677517;GFI1:-0.0874871356404;NFKB1_REL_RELA:-0.0899028764041;KLF4:-0.0902456306992;NR1H4:-0.0905392215604;HNF4A_NR2F1,2:-0.0923794120421;PITX1..3:-0.106884871254;T:-0.108512634218;MYB:-0.11453139277;TFDP1:-0.115005800829;GATA6:-0.117075022938;NR6A1:-0.118617638098;HNF1A:-0.124940591193;NKX2-1,4:-0.133163303292;HSF1,2:-0.136745675464;FOXD3:-0.138389744203;PAX2:-0.151042435376;NRF1:-0.1674496343;TFAP4:-0.172174567629;MYBL2:-0.172293151278;GCM1,2:-0.175461577331;NKX6-1,2:-0.183643365858;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.207183277367;AHR_ARNT_ARNT2:-0.21662581649;SOX2:-0.217156410249;REST:-0.230079212605;MAZ:-0.236235480061;EN1,2:-0.241970809384;ATF2:-0.259666859882;FOXA2:-0.261898565533;ATF4:-0.283824753704;IRF7:-0.29596355991;JUN:-0.2973204969;ZBTB6:-0.297826459787;ATF5_CREB3:-0.306912946064;ZIC1..3:-0.318209901062;NFIX:-0.338614618888;SPIB:-0.349785479917;EP300:-0.35298697392;GTF2I:-0.378705775421;FOXP1:-0.383650054371;CREB1:-0.388012598059;NHLH1,2:-0.397874497419;UFEwm:-0.403195032769;SPI1:-0.42417033296;MED-1{core}:-0.425184822157;FOXN1:-0.427073023634;NR3C1:-0.43145705269;RXR{A,B,G}:-0.434234324442;RUNX1..3:-0.438411183836;NFE2L2:-0.438922858908;CUX2:-0.439455857431;PRRX1,2:-0.44916421124;ESR1:-0.477756626815;HIC1:-0.485756186547;RORA:-0.48648079828;SPZ1:-0.492862913058;EVI1:-0.493363435231;RFX2..5_RFXANK_RFXAP:-0.500096988881;FOXO1,3,4:-0.500670306764;RREB1:-0.505376708372;STAT2,4,6:-0.509488856539;PAX5:-0.512754565201;HOX{A6,A7,B6,B7}:-0.524213055609;RFX1:-0.537042291334;HMX1:-0.54300803152;AIRE:-0.555959108516;HMGA1,2:-0.568524909478;MEF2{A,B,C,D}:-0.569145829197;HBP1_HMGB_SSRP1_UBTF:-0.581568671612;ZNF384:-0.601660729486;ZFP161:-0.603286319085;PAX6:-0.614984434554;MAFB:-0.621588810266;POU3F1..4:-0.63756938809;DBP:-0.640990722797;TFAP2B:-0.647876379547;SRF:-0.674948329673;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.681830805021;NFATC1..3:-0.697503690919;NKX3-1:-0.715922448929;ALX1:-0.769629650216;ALX4:-0.774969762811;SOX5:-0.777599502442;MZF1:-0.779559464876;ZBTB16:-0.783987275614;TGIF1:-0.843692701672;PRDM1:-0.848924173074;NFE2L1:-0.86273430105;FOX{D1,D2}:-0.877060569824;RXRA_VDR{dimer}:-0.877553792375;TAL1_TCF{3,4,12}:-0.882490232589;TOPORS:-0.883088173047;BREu{core}:-0.90428393157;MYFfamily:-0.914488807054;CDX1,2,4:-0.926132361017;PAX3,7:-0.93353594245;IRF1,2:-0.994964420413;EGR1..3:-0.995373016193;MTE{core}:-0.997980342191;ATF6:-1.00461544863;BPTF:-1.01890802897;PATZ1:-1.02027580424;FOXP3:-1.03126559295;DMAP1_NCOR{1,2}_SMARC:-1.04519873989;ESRRA:-1.07645832948;IKZF2:-1.10584823642;STAT1,3:-1.13627871035;NANOG{mouse}:-1.15920868202;GATA4:-1.16528438671;HOXA9_MEIS1:-1.17154885652;SREBF1,2:-1.26079919633;XBP1:-1.42811414232 | |top_motifs=TP53:2.28453204493;VSX1,2:2.03901056338;TBX4,5:1.98192688553;ZEB1:1.78424128607;SNAI1..3:1.53891665673;ADNP_IRX_SIX_ZHX:1.52800332627;ZNF148:1.15953525421;PDX1:1.01010526454;PPARG:0.960405317757;HAND1,2:0.955069041649;ONECUT1,2:0.929596372815;NKX2-3_NKX2-5:0.916386828865;POU1F1:0.908066260652;NKX2-2,8:0.858240534674;CRX:0.826553537269;CEBPA,B_DDIT3:0.822269940481;MYOD1:0.819947761289;TEF:0.797366397322;POU2F1..3:0.773201746709;NANOG:0.772771601486;NR5A1,2:0.767770340998;FOXQ1:0.74055630566;TBP:0.697097875868;TEAD1:0.691835214149;CDC5L:0.63137241934;FOS_FOS{B,L1}_JUN{B,D}:0.627751821163;ELK1,4_GABP{A,B1}:0.591729252039;XCPE1{core}:0.552428666826;NFIL3:0.541450100199;ZNF423:0.498647318878;BACH2:0.475901285801;ARID5B:0.472051470176;bHLH_family:0.465185151435;MTF1:0.462731035607;TFCP2:0.462595241503;POU5F1:0.461328982087;FOXM1:0.452829003229;GTF2A1,2:0.427594396914;FOXL1:0.417260628115;LMO2:0.407099827175;STAT5{A,B}:0.394696872144;SP1:0.392889750754;EBF1:0.383309978152;FOSL2:0.379921435141;IKZF1:0.375859297935;NKX3-2:0.305334892822;FOX{I1,J2}:0.294867340747;PBX1:0.247287961454;GLI1..3:0.244844229991;LHX3,4:0.228150082864;HLF:0.222816029312;LEF1_TCF7_TCF7L1,2:0.202998574617;RBPJ:0.197765440597;ELF1,2,4:0.188861933778;ZNF238:0.160835604587;HOX{A4,D4}:0.159379706138;PAX4:0.146895955446;GFI1B:0.136994156459;AR:0.130683010846;POU6F1:0.128330973733;PAX1,9:0.126674200882;TLX1..3_NFIC{dimer}:0.122316925567;NFE2:0.113762101653;ZNF143:0.103284529377;TFAP2{A,C}:0.0879571106675;HES1:0.0795885347024;SOX17:0.0705342246447;NFY{A,B,C}:0.0582341635752;YY1:0.0395556112236;GZF1:0.0381670131354;PAX8:0.0270160830142;TLX2:0.0219529812157;HIF1A:0.0015845351419;HOX{A5,B5}:0.000175581106412;OCT4_SOX2{dimer}:-0.0353556714692;FOX{F1,F2,J1}:-0.0500624296;E2F1..5:-0.063857255428;SMAD1..7,9:-0.070822317421;SOX{8,9,10}:-0.0743343221048;ETS1,2:-0.0836543677517;GFI1:-0.0874871356404;NFKB1_REL_RELA:-0.0899028764041;KLF4:-0.0902456306992;NR1H4:-0.0905392215604;HNF4A_NR2F1,2:-0.0923794120421;PITX1..3:-0.106884871254;T:-0.108512634218;MYB:-0.11453139277;TFDP1:-0.115005800829;GATA6:-0.117075022938;NR6A1:-0.118617638098;HNF1A:-0.124940591193;NKX2-1,4:-0.133163303292;HSF1,2:-0.136745675464;FOXD3:-0.138389744203;PAX2:-0.151042435376;NRF1:-0.1674496343;TFAP4:-0.172174567629;MYBL2:-0.172293151278;GCM1,2:-0.175461577331;NKX6-1,2:-0.183643365858;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.207183277367;AHR_ARNT_ARNT2:-0.21662581649;SOX2:-0.217156410249;REST:-0.230079212605;MAZ:-0.236235480061;EN1,2:-0.241970809384;ATF2:-0.259666859882;FOXA2:-0.261898565533;ATF4:-0.283824753704;IRF7:-0.29596355991;JUN:-0.2973204969;ZBTB6:-0.297826459787;ATF5_CREB3:-0.306912946064;ZIC1..3:-0.318209901062;NFIX:-0.338614618888;SPIB:-0.349785479917;EP300:-0.35298697392;GTF2I:-0.378705775421;FOXP1:-0.383650054371;CREB1:-0.388012598059;NHLH1,2:-0.397874497419;UFEwm:-0.403195032769;SPI1:-0.42417033296;MED-1{core}:-0.425184822157;FOXN1:-0.427073023634;NR3C1:-0.43145705269;RXR{A,B,G}:-0.434234324442;RUNX1..3:-0.438411183836;NFE2L2:-0.438922858908;CUX2:-0.439455857431;PRRX1,2:-0.44916421124;ESR1:-0.477756626815;HIC1:-0.485756186547;RORA:-0.48648079828;SPZ1:-0.492862913058;EVI1:-0.493363435231;RFX2..5_RFXANK_RFXAP:-0.500096988881;FOXO1,3,4:-0.500670306764;RREB1:-0.505376708372;STAT2,4,6:-0.509488856539;PAX5:-0.512754565201;HOX{A6,A7,B6,B7}:-0.524213055609;RFX1:-0.537042291334;HMX1:-0.54300803152;AIRE:-0.555959108516;HMGA1,2:-0.568524909478;MEF2{A,B,C,D}:-0.569145829197;HBP1_HMGB_SSRP1_UBTF:-0.581568671612;ZNF384:-0.601660729486;ZFP161:-0.603286319085;PAX6:-0.614984434554;MAFB:-0.621588810266;POU3F1..4:-0.63756938809;DBP:-0.640990722797;TFAP2B:-0.647876379547;SRF:-0.674948329673;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.681830805021;NFATC1..3:-0.697503690919;NKX3-1:-0.715922448929;ALX1:-0.769629650216;ALX4:-0.774969762811;SOX5:-0.777599502442;MZF1:-0.779559464876;ZBTB16:-0.783987275614;TGIF1:-0.843692701672;PRDM1:-0.848924173074;NFE2L1:-0.86273430105;FOX{D1,D2}:-0.877060569824;RXRA_VDR{dimer}:-0.877553792375;TAL1_TCF{3,4,12}:-0.882490232589;TOPORS:-0.883088173047;BREu{core}:-0.90428393157;MYFfamily:-0.914488807054;CDX1,2,4:-0.926132361017;PAX3,7:-0.93353594245;IRF1,2:-0.994964420413;EGR1..3:-0.995373016193;MTE{core}:-0.997980342191;ATF6:-1.00461544863;BPTF:-1.01890802897;PATZ1:-1.02027580424;FOXP3:-1.03126559295;DMAP1_NCOR{1,2}_SMARC:-1.04519873989;ESRRA:-1.07645832948;IKZF2:-1.10584823642;STAT1,3:-1.13627871035;NANOG{mouse}:-1.15920868202;GATA4:-1.16528438671;HOXA9_MEIS1:-1.17154885652;SREBF1,2:-1.26079919633;XBP1:-1.42811414232 | ||
|xref= | |xref= | ||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11292-117A5;search_select_hide=table117:FF:11292-117A5 | |||
}} | }} |
Latest revision as of 16:31, 3 June 2020
Name: | Tracheal Epithelial Cells, donor1 |
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Species: | Human (Homo sapiens) |
Library ID: | CNhs11092 |
Sample type: | primary cells |
Genomic View: | UCSC |
RefEX: | Specific genes |
FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11 |
CAGEd-oPOSSUM: | link |
ZENBU report : | link |
Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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Download raw sequence, BAM & CTSS | ||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11092
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11092
Novel motif | Logo | P-value |
---|---|---|
1 | 1 | 0.3 |
10 | 10 | 0.788 |
100 | 100 | 0.343 |
101 | 101 | 0.0168 |
102 | 102 | 0.255 |
103 | 103 | 0.204 |
104 | 104 | 0.265 |
105 | 105 | 0.0248 |
106 | 106 | 0.0896 |
107 | 107 | 0.032 |
108 | 108 | 0.666 |
109 | 109 | 0.0015 |
11 | 11 | 0.108 |
110 | 110 | 0.0577 |
111 | 111 | 0.144 |
112 | 112 | 0.711 |
113 | 113 | 0.393 |
114 | 114 | 0.251 |
115 | 115 | 0.798 |
116 | 116 | 0.863 |
117 | 117 | 0.191 |
118 | 118 | 0.889 |
119 | 119 | 0.148 |
12 | 12 | 0.451 |
120 | 120 | 0.0287 |
121 | 121 | 0.889 |
122 | 122 | 0.0261 |
123 | 123 | 0.893 |
124 | 124 | 0.477 |
125 | 125 | 0.414 |
126 | 126 | 0.656 |
127 | 127 | 0.147 |
128 | 128 | 0.692 |
129 | 129 | 0.192 |
13 | 13 | 0.0127 |
130 | 130 | 0.751 |
131 | 131 | 0.555 |
132 | 132 | 0.414 |
133 | 133 | 7.85303e-4 |
134 | 134 | 0.343 |
135 | 135 | 0.989 |
136 | 136 | 0.164 |
137 | 137 | 0.189 |
138 | 138 | 0.887 |
139 | 139 | 0.965 |
14 | 14 | 0.88 |
140 | 140 | 0.456 |
141 | 141 | 0.426 |
142 | 142 | 0.262 |
143 | 143 | 0.853 |
144 | 144 | 0.074 |
145 | 145 | 0.116 |
146 | 146 | 0.00515 |
147 | 147 | 0.0781 |
148 | 148 | 0.366 |
149 | 149 | 0.886 |
15 | 15 | 0.895 |
150 | 150 | 0.263 |
151 | 151 | 0.435 |
152 | 152 | 0.0459 |
153 | 153 | 0.32 |
154 | 154 | 0.793 |
155 | 155 | 0.872 |
156 | 156 | 0.364 |
157 | 157 | 0.515 |
158 | 158 | 0.167 |
159 | 159 | 0.402 |
16 | 16 | 0.0798 |
160 | 160 | 0.169 |
161 | 161 | 0.655 |
162 | 162 | 0.216 |
163 | 163 | 0.909 |
164 | 164 | 0.364 |
165 | 165 | 0.497 |
166 | 166 | 0.304 |
167 | 167 | 0.452 |
168 | 168 | 0.549 |
169 | 169 | 0.0563 |
17 | 17 | 0.136 |
18 | 18 | 0.218 |
19 | 19 | 0.863 |
2 | 2 | 0.368 |
20 | 20 | 0.479 |
21 | 21 | 0.792 |
22 | 22 | 0.383 |
23 | 23 | 0.438 |
24 | 24 | 0.0318 |
25 | 25 | 0.719 |
26 | 26 | 0.228 |
27 | 27 | 0.643 |
28 | 28 | 0.586 |
29 | 29 | 0.269 |
3 | 3 | 0.415 |
30 | 30 | 0.133 |
31 | 31 | 0.934 |
32 | 32 | 0.145 |
33 | 33 | 0.0561 |
34 | 34 | 0.9 |
35 | 35 | 0.379 |
36 | 36 | 0.306 |
37 | 37 | 0.32 |
38 | 38 | 0.272 |
39 | 39 | 0.298 |
4 | 4 | 0.423 |
40 | 40 | 0.00949 |
41 | 41 | 0.455 |
42 | 42 | 0.395 |
43 | 43 | 0.526 |
44 | 44 | 0.761 |
45 | 45 | 0.225 |
46 | 46 | 0.59 |
47 | 47 | 0.155 |
48 | 48 | 0.032 |
49 | 49 | 0.856 |
5 | 5 | 0.724 |
50 | 50 | 0.366 |
51 | 51 | 0.96 |
52 | 52 | 0.581 |
53 | 53 | 0.524 |
54 | 54 | 0.791 |
55 | 55 | 0.792 |
56 | 56 | 0.337 |
57 | 57 | 0.226 |
58 | 58 | 0.762 |
59 | 59 | 0.246 |
6 | 6 | 0.35 |
60 | 60 | 0.281 |
61 | 61 | 0.529 |
62 | 62 | 0.962 |
63 | 63 | 0.107 |
64 | 64 | 0.242 |
65 | 65 | 0.476 |
66 | 66 | 0.168 |
67 | 67 | 0.778 |
68 | 68 | 0.454 |
69 | 69 | 0.696 |
7 | 7 | 0.182 |
70 | 70 | 0.0257 |
71 | 71 | 0.107 |
72 | 72 | 0.88 |
73 | 73 | 0.0295 |
74 | 74 | 0.0179 |
75 | 75 | 0.0821 |
76 | 76 | 0.817 |
77 | 77 | 0.0294 |
78 | 78 | 0.00998 |
79 | 79 | 0.125 |
8 | 8 | 0.238 |
80 | 80 | 0.94 |
81 | 81 | 0.497 |
82 | 82 | 0.978 |
83 | 83 | 0.406 |
84 | 84 | 0.741 |
85 | 85 | 0.958 |
86 | 86 | 0.871 |
87 | 87 | 0.0333 |
88 | 88 | 0.5 |
89 | 89 | 0.117 |
9 | 9 | 0.995 |
90 | 90 | 0.958 |
91 | 91 | 0.677 |
92 | 92 | 0.955 |
93 | 93 | 0.959 |
94 | 94 | 0.729 |
95 | 95 | 0.0607 |
96 | 96 | 0.82 |
97 | 97 | 0.811 |
98 | 98 | 0.762 |
99 | 99 | 0.0404 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11092
FANTOM5 (FF) ontology
Direct parent terms
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0002202 (epithelial cell of tracheobronchial tree)
0000255 (eukaryotic cell)
0002076 (endo-epithelial cell)
0002632 (epithelial cell of lower respiratory tract)
0002368 (respiratory epithelial cell)
0000307 (tracheal epithelial cell)
UBERON: Anatomy
0000468 (multi-cellular organism)
0003126 (trachea)
0002100 (trunk)
0000064 (organ part)
0004119 (endoderm-derived structure)
0000466 (immaterial anatomical entity)
0000062 (organ)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000063 (organ segment)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003103 (compound organ)
0009569 (subdivision of trunk)
0005178 (thoracic cavity element)
0000072 (segment of respiratory tract)
0005177 (trunk region element)
0000464 (anatomical space)
0001005 (respiratory airway)
0005181 (thoracic segment organ)
0010317 (germ layer / neural crest derived structure)
0007196 (tracheobronchial tree)
0000065 (respiratory tract)
0001558 (lower respiratory tract)
0001004 (respiratory system)
0002224 (thoracic cavity)
0000915 (thoracic segment of trunk)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000189 (human tracheal epithelial cell sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000223 (endodermal cell)
CL:0000377 (tracheoblast)