FF:11515-119H3: Difference between revisions

Latest revision as of 18:05, 4 June 2020

Name:	Renal Proximal Tubular Epithelial Cell, donor1
Species:	Human (Homo sapiens)
Library ID:	CNhs11330
Sample type:	primary cells
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5, 6, 7, 8, 9, 10
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	kidney
dev stage	NA
sex	NA
age	NA
cell type	epithelial cell of kidney, proximal tubule
cell line	NA
company	Sciencell/3H
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	lot:5127
catalog number	SC4105
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005391

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs11330		CAGE		DRX008437		DRR009309

Accession ID Hg19

Library id		BAM		CTSS
CNhs11330		DRZ000734		DRZ002119

Accession ID Hg38

Library id		BAM		CTSS
CNhs11330		DRZ012084		DRZ013469

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

RNA-Seq Accession numbers

Method		Sample accession id
sRNA-Seq		SAMD00005391

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
SRhi10014.CCGTCC		sRNA-Seq		DRX037239		DRR041605

Accession ID Hg19

Library id		BAM		CTSS
SRhi10014.CCGTCC		DRZ007247

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.102
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	0.127
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0.0643
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	-0.0663
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	-0.351
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.0881
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.112
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.101
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0.518
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0.334
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	-0.0127
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0.0986
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.534
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11330

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	1
MA0003.1	MA0003.1	0.391
MA0004.1	MA0004.1	0.524
MA0006.1	MA0006.1	0.0456
MA0007.1	MA0007.1	0.0484
MA0009.1	MA0009.1	0.306
MA0014.1	MA0014.1	0.229
MA0017.1	MA0017.1	0.0164
MA0018.2	MA0018.2	0.189
MA0019.1	MA0019.1	0.64
MA0024.1	MA0024.1	0.0605
MA0025.1	MA0025.1	0.613
MA0027.1	MA0027.1	0.158
MA0028.1	MA0028.1	0.446
MA0029.1	MA0029.1	0.273
MA0030.1	MA0030.1	0.455
MA0031.1	MA0031.1	0.0411
MA0035.2	MA0035.2	0.0727
MA0038.1	MA0038.1	0.00242
MA0039.2	MA0039.2	0.00755
MA0040.1	MA0040.1	0.813
MA0041.1	MA0041.1	0.283
MA0042.1	MA0042.1	0.957
MA0043.1	MA0043.1	0.238
MA0046.1	MA0046.1	1.83958e-31
MA0047.2	MA0047.2	0.309
MA0048.1	MA0048.1	0.528
MA0050.1	MA0050.1	0.128
MA0051.1	MA0051.1	0.909
MA0052.1	MA0052.1	0.329
MA0055.1	MA0055.1	0.0433
MA0057.1	MA0057.1	0.08
MA0058.1	MA0058.1	0.52
MA0059.1	MA0059.1	0.497
MA0060.1	MA0060.1	4.51853e-10
MA0061.1	MA0061.1	0.853
MA0062.2	MA0062.2	0.0709
MA0065.2	MA0065.2	0.0478
MA0066.1	MA0066.1	0.652
MA0067.1	MA0067.1	0.0186
MA0068.1	MA0068.1	0.721
MA0069.1	MA0069.1	0.154
MA0070.1	MA0070.1	0.0529
MA0071.1	MA0071.1	0.451
MA0072.1	MA0072.1	0.675
MA0073.1	MA0073.1	0.99
MA0074.1	MA0074.1	0.777
MA0076.1	MA0076.1	0.0519
MA0077.1	MA0077.1	0.271
MA0078.1	MA0078.1	0.451
MA0079.2	MA0079.2	0.532
MA0080.2	MA0080.2	0.0148
MA0081.1	MA0081.1	0.117
MA0083.1	MA0083.1	0.411
MA0084.1	MA0084.1	0.00418
MA0087.1	MA0087.1	0.482
MA0088.1	MA0088.1	0.894
MA0090.1	MA0090.1	2.42803e-4
MA0091.1	MA0091.1	0.0521
MA0092.1	MA0092.1	0.91
MA0093.1	MA0093.1	0.503
MA0099.2	MA0099.2	2.8437e-10
MA0100.1	MA0100.1	0.524
MA0101.1	MA0101.1	0.163
MA0102.2	MA0102.2	0.0128
MA0103.1	MA0103.1	2.07991e-8
MA0104.2	MA0104.2	0.844
MA0105.1	MA0105.1	0.35
MA0106.1	MA0106.1	0.098
MA0107.1	MA0107.1	0.155
MA0108.2	MA0108.2	2.32413e-5
MA0111.1	MA0111.1	0.439
MA0112.2	MA0112.2	0.464
MA0113.1	MA0113.1	0.795
MA0114.1	MA0114.1	0.0368
MA0115.1	MA0115.1	0.0554
MA0116.1	MA0116.1	0.524
MA0117.1	MA0117.1	0.0785
MA0119.1	MA0119.1	0.932
MA0122.1	MA0122.1	0.275
MA0124.1	MA0124.1	0.36
MA0125.1	MA0125.1	0.214
MA0131.1	MA0131.1	0.32
MA0135.1	MA0135.1	0.265
MA0136.1	MA0136.1	0.111
MA0137.2	MA0137.2	0.527
MA0138.2	MA0138.2	0.754
MA0139.1	MA0139.1	0.585
MA0140.1	MA0140.1	0.759
MA0141.1	MA0141.1	0.184
MA0142.1	MA0142.1	0.488
MA0143.1	MA0143.1	0.296
MA0144.1	MA0144.1	0.432
MA0145.1	MA0145.1	0.0888
MA0146.1	MA0146.1	0.243
MA0147.1	MA0147.1	0.98
MA0148.1	MA0148.1	0.764
MA0149.1	MA0149.1	0.0301
MA0150.1	MA0150.1	0.898
MA0152.1	MA0152.1	0.124
MA0153.1	MA0153.1	4.15736e-18
MA0154.1	MA0154.1	0.824
MA0155.1	MA0155.1	0.373
MA0156.1	MA0156.1	0.14
MA0157.1	MA0157.1	0.0706
MA0159.1	MA0159.1	0.128
MA0160.1	MA0160.1	0.078
MA0162.1	MA0162.1	0.159
MA0163.1	MA0163.1	0.224
MA0164.1	MA0164.1	0.649
MA0258.1	MA0258.1	0.72
MA0259.1	MA0259.1	0.526

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11330

Novel motif	Logo	P-value
1	1	0.528
10	10	0.122
100	100	0.285
101	101	0.00869
102	102	0.321
103	103	0.732
104	104	0.88
105	105	0.0996
106	106	0.169
107	107	0.0144
108	108	0.666
109	109	0.0556
11	11	0.518
110	110	0.541
111	111	0.972
112	112	0.508
113	113	0.115
114	114	0.0579
115	115	0.584
116	116	0.463
117	117	0.359
118	118	0.562
119	119	0.493
12	12	0.825
120	120	0.187
121	121	0.34
122	122	0.0179
123	123	0.0468
124	124	0.156
125	125	0.244
126	126	0.4
127	127	0.352
128	128	0.439
129	129	0.0372
13	13	0.152
130	130	0.322
131	131	0.0751
132	132	0.204
133	133	0.0185
134	134	0.55
135	135	0.327
136	136	0.076
137	137	0.283
138	138	0.209
139	139	0.102
14	14	0.388
140	140	0.468
141	141	0.541
142	142	0.805
143	143	0.569
144	144	0.316
145	145	0.485
146	146	0.0211
147	147	0.428
148	148	0.31
149	149	0.833
15	15	0.846
150	150	0.257
151	151	0.69
152	152	0.057
153	153	0.52
154	154	0.284
155	155	0.881
156	156	0.0216
157	157	0.955
158	158	0.303
159	159	0.516
16	16	0.245
160	160	0.171
161	161	0.705
162	162	0.138
163	163	0.495
164	164	0.3
165	165	0.441
166	166	0.537
167	167	0.315
168	168	0.812
169	169	0.288
17	17	0.422
18	18	0.958
19	19	0.972
2	2	0.267
20	20	0.932
21	21	0.337
22	22	0.419
23	23	0.38
24	24	0.455
25	25	0.866
26	26	0.309
27	27	0.292
28	28	0.92
29	29	0.76
3	3	0.367
30	30	0.0286
31	31	0.663
32	32	0.0457
33	33	0.0374
34	34	0.565
35	35	0.00706
36	36	0.904
37	37	0.736
38	38	0.394
39	39	0.242
4	4	0.17
40	40	0.0081
41	41	0.288
42	42	0.765
43	43	0.697
44	44	0.595
45	45	0.208
46	46	0.962
47	47	0.697
48	48	0.436
49	49	0.661
5	5	0.53
50	50	0.173
51	51	0.807
52	52	0.276
53	53	0.573
54	54	0.657
55	55	0.377
56	56	0.203
57	57	0.884
58	58	0.674
59	59	0.241
6	6	0.154
60	60	0.291
61	61	0.586
62	62	0.414
63	63	0.194
64	64	0.393
65	65	0.334
66	66	0.0331
67	67	0.657
68	68	0.588
69	69	0.443
7	7	0.406
70	70	0.0846
71	71	0.38
72	72	0.841
73	73	0.0785
74	74	0.198
75	75	0.615
76	76	0.0861
77	77	0.00637
78	78	0.642
79	79	0.0189
8	8	0.522
80	80	0.418
81	81	0.144
82	82	0.0873
83	83	0.982
84	84	0.649
85	85	0.28
86	86	0.458
87	87	0.0195
88	88	0.972
89	89	0.162
9	9	0.81
90	90	0.261
91	91	0.417
92	92	0.683
93	93	0.58
94	94	0.443
95	95	0.333
96	96	0.695
97	97	0.83
98	98	0.974
99	99	6.99081e-4

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs11330

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000155 human renal proximal tubular epithelial cell sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000075 (columnar/cuboidal epithelial cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0002078 (meso-epithelial cell)
0000255 (eukaryotic cell)
0000239 (brush border epithelial cell)
1000615 (kidney cortex tubule cell)
1000497 (kidney cell)
0002518 (kidney epithelial cell)
0002681 (kidney cortical cell)
1000449 (epithelial cell of nephron)
1000507 (kidney tubule cell)
0002584 (renal cortical epithelial cell)
1000494 (nephron tubule epithelial cell)
0002306 (epithelial cell of proximal tubule)

UBERON: Anatomy
0000468 (multi-cellular organism)
0002113 (kidney)
0002100 (trunk)
0000483 (epithelium)
0001851 (cortex)
0000479 (tissue)
0000064 (organ part)
0000062 (organ)
0004111 (anatomical conduit)
0000475 (organism subdivision)
0006555 (excretory tube)
0006554 (urinary system structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0003914 (epithelial tube)
0000025 (tube)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0003103 (compound organ)
0009569 (subdivision of trunk)
0004211 (nephron epithelium)
0009773 (renal tubule)
0000489 (cavitated compound organ)
0000353 (parenchyma)
0005177 (trunk region element)
0005172 (abdomen element)
0006853 (renal cortex tubule)
0001231 (nephron tubule)
0004819 (kidney epithelium)
0005173 (abdominal segment element)
0007685 (region of nephron tubule)
0004810 (nephron tubule epithelium)
0001285 (nephron)
0004134 (proximal tubule)
0001225 (cortex of kidney)
0011143 (upper urinary tract)
0001008 (renal system)
0002417 (abdominal segment of trunk)
0008987 (renal parenchyma)
0007684 (uriniferous tubule)
0000916 (abdomen)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000151 (human renal epithelial cell sample)
0000155 (human renal proximal tubular epithelial cell sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000222 (mesodermal cell)

@@ Line 1: / Line 1: @@
 {{f5samples
+|DRA_sample_Accession=CAGE@SAMD00005391
+|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005391
+|accession_numbers=CAGE;DRX008437;DRR009309;DRZ000734;DRZ002119;DRZ012084;DRZ013469
+|accession_numbers_RNASeq=sRNA-Seq;DRX037239;DRR041605;DRZ007247
 |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002113,UBERON:0002100,UBERON:0000483,UBERON:0001851,UBERON:0000479,UBERON:0000064,UBERON:0000062,UBERON:0004111,UBERON:0000475,UBERON:0006555,UBERON:0006554,UBERON:0000061,UBERON:0000465,UBERON:0003914,UBERON:0000025,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0003103,UBERON:0009569,UBERON:0004211,UBERON:0009773,UBERON:0000489,UBERON:0000353,UBERON:0005177,UBERON:0005172,UBERON:0006853,UBERON:0001231,UBERON:0004819,UBERON:0005173,UBERON:0007685,UBERON:0004810,UBERON:0001285,UBERON:0004134,UBERON:0001225,UBERON:0011143,UBERON:0001008,UBERON:0002417,UBERON:0008987,UBERON:0007684,UBERON:0000916
 |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000075,CL:0000066,CL:0002371,CL:0002078,CL:0000255,CL:0000239,CL:1000615,CL:1000497,CL:0002518,CL:0002681,CL:1000449,CL:1000507,CL:0002584,CL:1000494,CL:0002306
@@ Line 7: / Line 11: @@
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr2:114036488..114036504,-!p1@PAX8!2.07!117.24!PAX8;;chr17:36105042..36105060,-!p1@HNF1B!1.93!84.87!HNF1B;;chr1:201979703..201979721,+!p2@ELF3!1.89!76.46!ELF3;;chr1:201979743..201979762,+!p1@ELF3!1.88!75.44!ELF3;;chr1:209979467..209979494,-!p1@IRF6!1.61!44.09!IRF6;;chr6:50786591..50786614,+!p1@TFAP2B!1.55!34.66!TFAP2B;;chr17:46622205..46622218,-!p3@HOXB2!1.50!34.92!HOXB2;;chr17:46703687..46703740,-!p1@HOXB9!1.50!30.33!HOXB9;;chr6:34204921..34204939,+!p3@HMGA1!1.41!708.05!HMGA1;;chr17:46682321..46682362,-!p1@HOXB6!1.40!23.96!HOXB6;;chr2:122042770..122042785,-!p1@TFCP2L1!1.38!23.19!TFCP2L1;;chr17:46675558..46675577,-!p2@HOXB6!1.38!22.94!HOXB6;;chr7:27205136..27205164,-!p1@HOXA9!1.37!22.68!HOXA9;;chr2:105470562..105470582,+!p@chr2:105470562..105470582,+!1.32!19.88!POU3F3;;chr21:38071430..38071456,+!p1@SIM2!1.29!18.35!SIM2;;chr6:10415276..10415341,-!p2@TFAP2A!1.27!21.66!TFAP2A;;chr11:34642612..34642646,+!p1@EHF!1.26!17.08!EHF;;chr3:111314186..111314204,-!p1@ZBED2!1.22!15.55!ZBED2;;chr17:46622440..46622477,-!p5@HOXB2!1.18!15.80!HOXB2;;chr5:2751762..2751784,-!p1@IRX2!1.17!13.76!IRX2;;chr2:176994408..176994492,+!p1@HOXD8!1.17!13.76!HOXD8;;chr7:27205106..27205134,-!p2@HOXA9!1.16!13.51!HOXA9;;chr2:177053386..177053402,+!p1@HOXD1!1.14!12.74!HOXD1;;chr6:34204672..34204692,+!p1@HMGA1!1.06!1171.16!HMGA1;;chr2:46524897..46524911,+!p2@EPAS1!1.02!27.02!EPAS1;;chr17:46687959..46688007,-!p2@HOXB7!1.02!13.25!HOXB7;;chr17:46690839..46690884,-!p1@HOXB8!1.01!9.18!HOXB8;;chr20:42295745..42295765,+!p1@MYBL2!0.99!146.04!MYBL2;;chr17:46622229..46622257,-!p6@HOXB2!0.98!10.20!HOXB2;;chr17:46622070..46622109,-!p1@HOXB2!0.96!18.35!HOXB2;;chr17:46667594..46667619,-!p1@HOXB3!0.96!8.16!HOXB3;;chr1:24645832..24645853,+!p1@GRHL3!0.96!8.16!GRHL3;;chr7:27153454..27153469,-!p2@HOXA3!0.95!7.90!HOXA3;;chr17:46688334..46688385,-!p1@HOXB7!0.94!11.21!HOXB7;;chr17:46675420..46675465,-!p3@HOXB6!0.94!8.92!HOXB6;;chr17:7493405..7493419,-!p1@SOX15!0.94!7.65!SOX15;;chr6:10415484..10415508,-!p3@TFAP2A!0.94!7.65!TFAP2A;;chr11:65686732..65686756,+!p2@DRAP1!0.92!32.11!DRAP1;;chr15:83953397..83953425,-!p1@BNC1!0.92!8.41!BNC1;;chr10:8096631..8096660,+!p1@GATA3!0.91!8.67!GATA3;;chr6:1312325..1312340,+!p1@FOXQ1!0.90!11.72!FOXQ1;;chr20:42295713..42295738,+!p2@MYBL2!0.89!42.05!MYBL2;;chr11:65667846..65667868,-!p1@FOSL1!0.87!180.96!FOSL1;;chr2:105470536..105470556,+!p@chr2:105470536..105470556,+!0.87!6.37!POU3F3;;chr17:41623692..41623715,-!p1@ETV4!0.85!27.78!ETV4;;chr17:46703826..46703845,-!p3@HOXB9!0.85!6.12!HOXB9;;chr7:27219849..27219867,-!p6@HOXA10!0.85!6.12!HOXA10;;chr7:27224795..27224840,-!p2@HOXA11!0.84!5.86!HOXA11;;chr12:54380404..54380433,+!p3@HOXC10!0.84!5.86!HOXC10;;chr17:46703528..46703549,-!p5@HOXB9!0.84!5.86!HOXB9;;chr17:46675539..46675551,-!p7@HOXB6!0.82!5.61!HOXB6;;chr6:50789717..50789729,+!p4@TFAP2B!0.82!5.61!TFAP2B;;chr12:54393880..54393962,+!p1@HOXC9!0.82!5.61!HOXC9;;chr11:65686802..65686818,+!p6@DRAP1!0.81!9.94!DRAP1;;chr10:119303078..119303169,+!p2@EMX2!0.80!5.35!EMX2;;chr1:209979411..209979433,-!p2@IRF6!0.80!5.35!IRF6;;chr7:27192185..27192209,-!p1@HOXA3!0.80!5.35!HOXA3;;chr7:27196217..27196246,-!p2@HOXA7!0.80!5.35!HOXA7;;chr20:31350184..31350200,+!p1@DNMT3B!0.79!11.47!DNMT3B;;chr10:102505493..102505546,+!p2@PAX2!0.79!5.10!PAX2;;chr17:36105074..36105086,-!p2@HNF1B!0.79!5.10!HNF1B;;chr12:66218255..66218304,+!p3@HMGA2!0.78!14.53!HMGA2;;chr12:3069037..3069119,+!p2@TEAD4!0.77!18.35!TEAD4;;chr3:69915385..69915438,+!p3@MITF!0.77!4.84!MITF;;chr7:27224842..27224872,-!p1@HOXA11!0.77!4.84!HOXA11;;chr7:28448965..28448994,+!p2@CREB5!0.76!18.35!CREB5;;chr17:70117153..70117174,+!p1@SOX9!0.75!53.27!SOX9;;chr11:61520075..61520136,+!p1@C11orf9!0.75!10.45!C11orf9;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!0.75!4.59!HOXC5;;chr17:46675619..46675642,-!p5@HOXB6!0.75!4.59!HOXB6;;chr17:46692624..46692659,-!p3@HOXB8!0.75!4.59!HOXB8;;chr1:6479968..6479986,-!p1@HES2!0.75!4.59!HES2;;chr3:69811858..69811881,+!p5@MITF!0.75!4.59!MITF;;chr2:46524878..46524891,+!p3@EPAS1!0.74!8.41!EPAS1;;chr2:177016336..177016350,+!p1@HOXD4!0.73!4.33!HOXD4;;chr3:69811882..69811898,+!p6@MITF!0.73!4.33!MITF;;chr17:46675586..46675600,-!p6@HOXB6!0.73!4.33!HOXB6;;chr13:73633131..73633149,+!p1@KLF5!0.72!51.23!KLF5;;chr11:65668011..65668020,-!p3@FOSL1!0.71!4.08!FOSL1;;chr17:35294075..35294102,+!p1@ENST00000559335!0.71!4.08!LHX1;;chr17:45928443..45928473,-!p2@SP6!0.71!4.08!SP6;;chr17:46622175..46622186,-!p12@HOXB2!0.71!4.08!HOXB2;;chr17:46692457..46692484,-!p2@HOXB8!0.71!4.08!HOXB8;;chr7:27219833..27219845,-!p7@HOXA10!0.71!4.08!HOXA10;;chr17:46621101..46621143,-!p7@HOXB2!0.70!5.61!HOXB2;;chr6:31126291..31126399,+!p1@TCF19!0.69!41.80!TCF19;;chr17:46655704..46655718,-!p2@HOXB4!0.69!6.12!HOXB4;;chr12:66218003..66218018,+!p9@HMGA2!0.69!4.84!HMGA2;;chr7:26191809..26191890,+!p1@NFE2L3!0.67!20.90!NFE2L3;;chr12:66218598..66218645,+!p2@HMGA2!0.67!19.12!HMGA2;;chr6:10412600..10412637,-!p1@TFAP2A!0.67!6.63!TFAP2A;;chr10:8100691..8100732,+!p5@GATA3!0.66!3.57!GATA3;;chr16:51185318..51185348,-!p2@SALL1!0.66!3.57!SALL1;;chr17:46667628..46667642,-!p2@HOXB3!0.66!3.57!HOXB3;;chr21:38071403..38071428,+!p2@SIM2!0.66!3.57!SIM2;;chr6:21593973..21593988,+!p1@SOX4!0.64!142.48!SOX4;;chr6:21597765..21597779,+!p2@SOX4!0.63!31.35!SOX4;;chr12:7079780..7079791,-!p2@PHB2!0.63!19.88!PHB2;;chr7:27169801..27169844,-!p2@HOXA4!0.63!3.31!HOXA4;;chr7:97840743..97840786,+!p1@BHLHA15!0.63!3.31!BHLHA15;;chr8:102504651..102504683,+!p1@GRHL2!0.63!3.31!GRHL2;;chr2:176987441..176987454,+!p1@HOXD9!0.63!3.31!HOXD9;;chr2:96012397..96012417,+!p3@KCNIP3!0.63!3.31!KCNIP3;;chr3:111314230..111314241,-!p2@ZBED2!0.63!3.31!ZBED2;;chr19:53496768..53496799,-!p1@ZNF702P!0.62!5.35!ZNF702P;;chr17:41623009..41623053,-!p4@ETV4!0.61!5.35!ETV4;;chr17:46622114..46622138,-!p4@HOXB2!0.61!5.10!HOXB2;;chr12:66218212..66218244,+!p5@HMGA2!0.61!4.84!HMGA2;;chr11:65554528..65554546,+!p1@OVOL1!0.61!3.06!OVOL1;;chr16:51185172..51185197,-!p1@SALL1!0.61!3.06!SALL1;;chr17:46675469..46675481,-!p4@HOXB6!0.61!3.06!HOXB6;;chr17:46687935..46687950,-!p3@HOXB7!0.61!3.06!HOXB7;;chr17:46692318..46692362,-!p5@HOXB8!0.61!3.06!HOXB8;;chr17:46703212..46703238,-!p2@HOXB9!0.61!3.06!HOXB9;;chr2:176972000..176972025,+!p4@HOXD11!0.61!3.06!HOXD11;;chr2:96012353..96012378,+!p4@KCNIP3!0.61!3.06!KCNIP3;;chr4:299227..299272,-!p1@ZNF732!0.61!3.06!ZNF732;;chr6:1612300..1612324,+!p3@FOXC1!0.61!3.06!FOXC1;;chr7:27196267..27196311,-!p1@HOXA7!0.61!3.06!HOXA7;;chr1:24646002..24646013,+!p3@GRHL3!0.61!3.06!GRHL3;;chr10:104155480..104155534,+!p2@NFKB2!0.60!23.19!NFKB2;;chr17:41622925..41622976,-!p3@ETV4!0.60!4.84!ETV4;;chr12:66218836..66218888,+!p1@HMGA2!0.59!32.62!HMGA2;;chr20:50159198..50159299,-!p1@NFATC2!0.59!4.59!NFATC2;;chr11:65686776..65686787,+!p9@DRAP1!0.59!3.57!DRAP1;;chr11:65667884..65667895,-!p2@FOSL1!0.58!13.00!FOSL1;;chr10:119302232..119302265,+!p1@EMX2!0.58!2.80!EMX2;;chr12:54378923..54378966,+!p1@HOXC10!0.58!2.80!HOXC10;;chr12:54394059..54394088,+!p3@HOXC9!0.58!2.80!HOXC9;;chr2:105470599..105470610,+!p@chr2:105470599..105470610,+!0.58!2.80!POU3F3;;chr3:141043050..141043063,+!p22@ZBTB38!0.58!2.80!ZBTB38;;chr5:3595977..3595999,+!p1@IRX1!0.58!2.80!IRX1;;chr6:34210478..34210481,+!p8@HMGA1!0.58!2.80!HMGA1;;chr7:27190547..27190591,-!p1@HOXA6!0.58!2.80!HOXA6;;chr7:27213893..27213954,-!p1@HOXA10!0.58!2.80!HOXA10;;chr15:67357924..67357952,+!p2@SMAD3!0.57!21.92!SMAD3;;chr1:8938736..8938756,-!p1@ENO1!0.56!3624.34!ENO1;;chr1:8938766..8938774,-!p2@ENO1!0.56!225.31!ENO1;;chr18:3450161..3450183,+!p1@TGIF1!0.56!111.38!TGIF1;;chr12:2986275..2986363,-!p1@FOXM1!0.56!32.62!FOXM1;;chr15:96869255..96869291,+!p6@NR2F2!0.56!5.35!NR2F2;;chr20:50721803..50721857,-!p2@ZFP64!0.56!4.59!ZFP64;;chr22:21355896..21355920,-!p4@THAP7!0.56!3.06!THAP7;;chr10:104154246..104154347,+!p3@NFKB2!0.55!19.12!NFKB2;;chr17:46621937..46621966,-!p2@HOXB2!0.55!8.16!HOXB2;;chr11:64764435..64764449,-!p1@BATF2!0.55!3.82!BATF2;;chr12:54447599..54447630,+!p3@HOXC4!0.55!3.31!HOXC4;;chr12:54402745..54402788,+!p1@HOXC8!0.55!2.55!HOXC8;;chr16:51185573..51185593,-!p3@SALL1!0.55!2.55!SALL1;;chr17:46691732..46691766,-!p4@HOXB8!0.55!2.55!HOXB8;;chr17:46692603..46692621,-!p6@HOXB8!0.55!2.55!HOXB8;;chr5:3595934..3595957,+!p2@IRX1!0.55!2.55!IRX1;;chr3:141043020..141043049,+!p17@ZBTB38!0.55!2.55!ZBTB38;;chr1:8938709..8938720,-!p3@ENO1!0.54!152.16!ENO1;;chr17:7492684..7492778,-!p2@SOX15!0.53!5.86!SOX15;;chr15:96869114..96869160,+!p11@NR2F2!0.53!3.57!NR2F2;;chr6:44233252..44233296,-!p1@NFKBIE!0.52!29.06!NFKBIE;;chr22:42229210..42229229,+!p3@SREBF2!0.52!6.37!SREBF2;;chr6:1610293..1610310,+!p1@FOXC1!0.52!4.33!FOXC1;;chr17:53342311..53342400,+!p1@HLF!0.52!2.80!HLF;;chr16:52581025..52581072,-!p1@TOX3!0.52!2.29!TOX3;;chr17:46621146..46621180,-!p10@HOXB2!0.52!2.29!HOXB2;;chr6:100912785..100912822,-!p1@SIM1!0.52!2.29!SIM1;;chr6:134210243..134210257,+!p1@TCF21!0.52!2.29!TCF21;;chr9:100615499..100615519,+!p1@FOXE1!0.52!2.29!FOXE1;;chr10:119302645..119302712,+!p3@EMX2!0.52!2.29!EMX2;;chr11:65554563..65554576,+!p2@OVOL1!0.52!2.29!OVOL1;;chr1:10856694..10856715,-!p3@CASZ1!0.52!2.29!CASZ1;;chr2:176987463..176987479,+!p2@HOXD9!0.52!2.29!HOXD9;;chr2:176994919..176994931,+!p2@HOXD8!0.52!2.29!HOXD8;;chr2:177001290..177001315,+!p1@HOXD3!0.52!2.29!HOXD3;;chr2:95963052..95963106,+!p1@KCNIP3!0.52!2.29!KCNIP3;;chr9:117160738..117160782,-!p2@AKNA!0.51!11.47!AKNA;;chr3:12329358..12329393,+!p3@PPARG!0.51!6.63!PPARG;;chr3:24536253..24536328,-!p1@THRB!0.51!4.84!THRB;;chr17:41622765..41622821,-!p2@ETV4!0.51!3.82!ETV4;;chr10:8096772..8096787,+!p2@GATA3!0.51!2.80!GATA3;;chr19:45908292..45908374,-!p1@PPP1R13L!0.50!24.98!PPP1R13L;;chr17:47492252..47492265,-!p2@PHB!0.50!11.21!PHB;;chr19:20188776..20188826,+!p1@ZNF90!0.50!7.14!ZNF90;;chr16:8962544..8962584,-!p2@CARHSP1!0.50!5.86!CARHSP1;;chr16:54320675..54320715,-!p1@IRX3!0.50!5.61!IRX3;;chr6:10412392..10412409,-!p4@TFAP2A!0.50!2.55!TFAP2A;;chr6:34204973..34204990,+!p4@HMGA1!0.49!37.47!HMGA1;;chr22:42229246..42229270,+!p2@SREBF2!0.49!34.92!SREBF2;;chr2:239148671..239148686,-!p1@HES6!0.49!9.69!HES6;;chr1:8926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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000066;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002078;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002518;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002584;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:1000494;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:1000615;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000353;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001008;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002113;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0004122
 |ffid_belonging_in_development=CL:0000222
 |fonse_cell_line=
@@ Line 38: / Line 44: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Renal%2520Proximal%2520Tubular%2520Epithelial%2520Cell%252c%2520donor1.CNhs11330.11515-119H3.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Renal%2520Proximal%2520Tubular%2520Epithelial%2520Cell%252c%2520donor1.CNhs11330.11515-119H3.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Renal%2520Proximal%2520Tubular%2520Epithelial%2520Cell%252c%2520donor1.CNhs11330.11515-119H3.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Renal%2520Proximal%2520Tubular%2520Epithelial%2520Cell%252c%2520donor1.CNhs11330.11515-119H3.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Renal%2520Proximal%2520Tubular%2520Epithelial%2520Cell%252c%2520donor1.CNhs11330.11515-119H3.hg38.nobarcode.ctss.bed.gz
 |id=FF:11515-119H3
 |is_a=EFO:0002091;;FF:0000155
 |is_obsolete=
+|library_id=CNhs11330
+|library_id_phase_based=2:CNhs11330
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11515
+|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10014.CCGTCC.11515
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11515
+|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10014.CCGTCC.11515
 |name=Renal Proximal Tubular Epithelial Cell, donor1
 |namespace=FANTOM5
@@ Line 46: / Line 65: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs11330,LSID768,release014,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=SRhi10014,,,
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 |rna_box=119
 |rna_catalog_number=SC4105
@@ Line 60: / Line 82: @@
 |rna_tube_id=119H3
 |rna_weight_ug=10
+|rnaseq_library_id=SRhi10014.CCGTCC
 |sample_age=
+|sample_category=primary cells
 |sample_cell_catalog=N/A
 |sample_cell_line=
@@ Line 82: / Line 106: @@
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 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11515-119H3;search_select_hide=table117:FF:11515-119H3
 }}

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FF:11515-119H3: Difference between revisions

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Latest revision as of 18:05, 4 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0