FF:11369-118A1: Difference between revisions

Latest revision as of 17:55, 4 June 2020

Name:	Tracheal Epithelial Cells, donor2
Species:	Human (Homo sapiens)
Library ID:	CNhs11993
Sample type:	primary cells
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	trachea
dev stage	45 years old adult
sex	male
age	45
cell type	tracheal epithelial cell
cell line	NA
company	Cell Applications
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	1217
catalog number	CA504-R10a
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00004729

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs11993		CAGE		DRX008523		DRR009395

Accession ID Hg19

Library id		BAM		CTSS
CNhs11993		DRZ000820		DRZ002205

Accession ID Hg38

Library id		BAM		CTSS
CNhs11993		DRZ012170		DRZ013555

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

RNA-Seq Accession numbers

Method		Sample accession id
sRNA-Seq		SAMD00004729

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
SRhi10006.GGTAGC		sRNA-Seq		DRX037089		DRR041455

Accession ID Hg19

Library id		BAM		CTSS
SRhi10006.GGTAGC		DRZ007097

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.0899
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.0868
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0.223
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	-0.295
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.224
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	0.719
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0.755
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	1.233
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	1.215
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	1.033
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0.223
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.239
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0.109
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0.223
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11993

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.314
MA0003.1	MA0003.1	0.276
MA0004.1	MA0004.1	0.784
MA0006.1	MA0006.1	0.13
MA0007.1	MA0007.1	0.114
MA0009.1	MA0009.1	0.0913
MA0014.1	MA0014.1	0.613
MA0017.1	MA0017.1	0.137
MA0018.2	MA0018.2	0.0609
MA0019.1	MA0019.1	0.249
MA0024.1	MA0024.1	0.293
MA0025.1	MA0025.1	0.393
MA0027.1	MA0027.1	0.483
MA0028.1	MA0028.1	0.725
MA0029.1	MA0029.1	0.708
MA0030.1	MA0030.1	0.903
MA0031.1	MA0031.1	0.115
MA0035.2	MA0035.2	0.343
MA0038.1	MA0038.1	0.445
MA0039.2	MA0039.2	0.00772
MA0040.1	MA0040.1	0.581
MA0041.1	MA0041.1	0.26
MA0042.1	MA0042.1	0.856
MA0043.1	MA0043.1	0.172
MA0046.1	MA0046.1	0.877
MA0047.2	MA0047.2	0.725
MA0048.1	MA0048.1	0.704
MA0050.1	MA0050.1	2.98038e-7
MA0051.1	MA0051.1	0.00137
MA0052.1	MA0052.1	0.66
MA0055.1	MA0055.1	0.0401
MA0057.1	MA0057.1	0.0716
MA0058.1	MA0058.1	0.56
MA0059.1	MA0059.1	0.441
MA0060.1	MA0060.1	0.275
MA0061.1	MA0061.1	0.627
MA0062.2	MA0062.2	0.67
MA0065.2	MA0065.2	0.00522
MA0066.1	MA0066.1	0.0288
MA0067.1	MA0067.1	0.279
MA0068.1	MA0068.1	0.0237
MA0069.1	MA0069.1	0.651
MA0070.1	MA0070.1	0.91
MA0071.1	MA0071.1	0.826
MA0072.1	MA0072.1	0.488
MA0073.1	MA0073.1	0.65
MA0074.1	MA0074.1	0.299
MA0076.1	MA0076.1	0.249
MA0077.1	MA0077.1	0.659
MA0078.1	MA0078.1	0.794
MA0079.2	MA0079.2	0.361
MA0080.2	MA0080.2	0.299
MA0081.1	MA0081.1	0.881
MA0083.1	MA0083.1	0.032
MA0084.1	MA0084.1	0.342
MA0087.1	MA0087.1	0.693
MA0088.1	MA0088.1	0.443
MA0090.1	MA0090.1	0.00931
MA0091.1	MA0091.1	0.913
MA0092.1	MA0092.1	0.349
MA0093.1	MA0093.1	0.643
MA0099.2	MA0099.2	9.80963e-18
MA0100.1	MA0100.1	0.036
MA0101.1	MA0101.1	0.997
MA0102.2	MA0102.2	0.13
MA0103.1	MA0103.1	6.92503e-5
MA0104.2	MA0104.2	0.857
MA0105.1	MA0105.1	0.754
MA0106.1	MA0106.1	2.53547e-6
MA0107.1	MA0107.1	0.801
MA0108.2	MA0108.2	3.63079e-15
MA0111.1	MA0111.1	0.583
MA0112.2	MA0112.2	0.016
MA0113.1	MA0113.1	0.675
MA0114.1	MA0114.1	0.0542
MA0115.1	MA0115.1	0.617
MA0116.1	MA0116.1	0.202
MA0117.1	MA0117.1	0.589
MA0119.1	MA0119.1	0.147
MA0122.1	MA0122.1	0.813
MA0124.1	MA0124.1	0.433
MA0125.1	MA0125.1	0.208
MA0131.1	MA0131.1	0.305
MA0135.1	MA0135.1	0.0322
MA0136.1	MA0136.1	0.131
MA0137.2	MA0137.2	0.148
MA0138.2	MA0138.2	0.152
MA0139.1	MA0139.1	0.8
MA0140.1	MA0140.1	0.833
MA0141.1	MA0141.1	0.351
MA0142.1	MA0142.1	0.0143
MA0143.1	MA0143.1	0.473
MA0144.1	MA0144.1	0.904
MA0145.1	MA0145.1	0.0248
MA0146.1	MA0146.1	0.038
MA0147.1	MA0147.1	0.912
MA0148.1	MA0148.1	0.64
MA0149.1	MA0149.1	0.173
MA0150.1	MA0150.1	0.0614
MA0152.1	MA0152.1	0.0849
MA0153.1	MA0153.1	0.188
MA0154.1	MA0154.1	0.237
MA0155.1	MA0155.1	0.238
MA0156.1	MA0156.1	0.514
MA0157.1	MA0157.1	0.288
MA0159.1	MA0159.1	0.29
MA0160.1	MA0160.1	0.22
MA0162.1	MA0162.1	0.117
MA0163.1	MA0163.1	0.43
MA0164.1	MA0164.1	0.929
MA0258.1	MA0258.1	0.038
MA0259.1	MA0259.1	0.768

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11993

Novel motif	Logo	P-value
1	1	0.638
10	10	0.55
100	100	0.382
101	101	0.00351
102	102	0.24
103	103	0.274
104	104	0.396
105	105	0.0712
106	106	0.0189
107	107	0.0152
108	108	0.527
109	109	0.00661
11	11	0.144
110	110	0.109
111	111	0.789
112	112	0.299
113	113	0.424
114	114	0.662
115	115	0.15
116	116	0.183
117	117	0.433
118	118	0.877
119	119	0.185
12	12	0.247
120	120	0.37
121	121	0.127
122	122	0.0167
123	123	0.411
124	124	0.421
125	125	0.87
126	126	0.82
127	127	0.0241
128	128	0.197
129	129	0.439
13	13	0.0488
130	130	0.327
131	131	0.369
132	132	0.711
133	133	0.0227
134	134	0.209
135	135	0.267
136	136	0.176
137	137	0.159
138	138	0.672
139	139	0.862
14	14	0.786
140	140	0.698
141	141	0.71
142	142	0.0256
143	143	0.618
144	144	0.249
145	145	0.189
146	146	0.00198
147	147	0.273
148	148	0.883
149	149	0.851
15	15	0.942
150	150	0.143
151	151	0.355
152	152	0.0368
153	153	0.896
154	154	0.443
155	155	0.546
156	156	0.746
157	157	0.998
158	158	0.244
159	159	0.76
16	16	0.0706
160	160	0.186
161	161	0.396
162	162	0.0859
163	163	0.845
164	164	0.75
165	165	0.526
166	166	0.218
167	167	0.269
168	168	0.545
169	169	0.0686
17	17	0.108
18	18	0.659
19	19	0.46
2	2	0.113
20	20	0.671
21	21	0.673
22	22	0.147
23	23	0.333
24	24	0.0413
25	25	0.971
26	26	0.0696
27	27	0.205
28	28	0.924
29	29	0.735
3	3	0.734
30	30	0.125
31	31	0.674
32	32	0.622
33	33	0.236
34	34	0.326
35	35	0.49
36	36	0.596
37	37	0.22
38	38	0.372
39	39	0.198
4	4	0.605
40	40	0.0134
41	41	0.879
42	42	0.983
43	43	0.497
44	44	0.924
45	45	0.0774
46	46	0.387
47	47	0.33
48	48	0.113
49	49	0.909
5	5	0.389
50	50	0.422
51	51	0.622
52	52	0.296
53	53	0.517
54	54	0.773
55	55	0.781
56	56	0.419
57	57	0.691
58	58	0.879
59	59	0.0564
6	6	0.203
60	60	0.259
61	61	0.928
62	62	0.931
63	63	0.184
64	64	0.367
65	65	0.158
66	66	0.557
67	67	0.639
68	68	0.885
69	69	0.117
7	7	0.388
70	70	0.0472
71	71	0.353
72	72	0.806
73	73	0.023
74	74	0.0907
75	75	0.449
76	76	0.814
77	77	0.018
78	78	0.144
79	79	0.99
8	8	0.14
80	80	0.898
81	81	0.745
82	82	0.78
83	83	0.859
84	84	0.72
85	85	0.371
86	86	0.919
87	87	0.0138
88	88	0.519
89	89	0.198
9	9	0.437
90	90	0.0036
91	91	0.725
92	92	0.769
93	93	0.72
94	94	0.688
95	95	0.141
96	96	0.761
97	97	0.741
98	98	0.287
99	99	0.0305

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs11993

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000189 human tracheal epithelial cell sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0002202 (epithelial cell of tracheobronchial tree)
0000255 (eukaryotic cell)
0002076 (endo-epithelial cell)
0002632 (epithelial cell of lower respiratory tract)
0002368 (respiratory epithelial cell)
0000307 (tracheal epithelial cell)

UBERON: Anatomy
0000468 (multi-cellular organism)
0003126 (trachea)
0002100 (trunk)
0000064 (organ part)
0004119 (endoderm-derived structure)
0000466 (immaterial anatomical entity)
0000062 (organ)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000063 (organ segment)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003103 (compound organ)
0009569 (subdivision of trunk)
0005178 (thoracic cavity element)
0000072 (segment of respiratory tract)
0005177 (trunk region element)
0000464 (anatomical space)
0001005 (respiratory airway)
0005181 (thoracic segment organ)
0010317 (germ layer / neural crest derived structure)
0007196 (tracheobronchial tree)
0000065 (respiratory tract)
0001558 (lower respiratory tract)
0001004 (respiratory system)
0002224 (thoracic cavity)
0000915 (thoracic segment of trunk)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000189 (human tracheal epithelial cell sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000223 (endodermal cell)
CL:0000377 (tracheoblast)

@@ Line 1: / Line 1: @@
 {{f5samples
+|DRA_sample_Accession=CAGE@SAMD00004729
+|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00004729
+|accession_numbers=CAGE;DRX008523;DRR009395;DRZ000820;DRZ002205;DRZ012170;DRZ013555
+|accession_numbers_RNASeq=sRNA-Seq;DRX037089;DRR041455;DRZ007097
 |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0003126,UBERON:0002100,UBERON:0000064,UBERON:0004119,UBERON:0000466,UBERON:0000062,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003103,UBERON:0009569,UBERON:0005178,UBERON:0000072,UBERON:0005177,UBERON:0000464,UBERON:0001005,UBERON:0005181,UBERON:0010317,UBERON:0007196,UBERON:0000065,UBERON:0001558,UBERON:0001004,UBERON:0002224,UBERON:0000915
 |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0002202,CL:0000255,CL:0002076,CL:0002632,CL:0002368,CL:0000307
@@ Line 7: / Line 11: @@
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr17:7493405..7493419,-!p1@SOX15!2.37!235.95!SOX15;;chr1:209979467..209979494,-!p1@IRF6!1.99!108.59!IRF6;;chr12:54785074..54785122,-!p2@ZNF385A!1.94!130.04!ZNF385A;;chr1:6479968..6479986,-!p1@HES2!1.84!68.37!HES2;;chr6:34524093..34524135,-!p1@SPDEF!1.84!67.70!SPDEF;;chr22:19748231..19748317,+!p1@TBX1!1.79!60.33!TBX1;;chr15:83953397..83953425,-!p1@BNC1!1.75!63.68!BNC1;;chr12:54785054..54785072,-!p4@ZNF385A!1.75!61.67!ZNF385A;;chr3:189507432..189507459,+!p1@TP63!1.72!51.61!TP63;;chr4:57547454..57547469,-!p1@HOPX!1.66!44.91!HOPX;;chr11:34642612..34642646,+!p1@EHF!1.64!42.90!EHF;;chr5:134369879..134369898,-!p2@PITX1!1.64!42.23!PITX1;;chr5:134369905..134369972,-!p1@PITX1!1.61!60.33!PITX1;;chr6:10415276..10415341,-!p2@TFAP2A!1.59!45.58!TFAP2A;;chr1:209979411..209979433,-!p2@IRF6!1.57!36.20!IRF6;;chr6:34524049..34524089,-!p2@SPDEF!1.53!32.84!SPDEF;;chr8:10588010..10588030,-!p1@SOX7!1.52!32.17!SOX7;;chr17:7492684..7492778,-!p2@SOX15!1.50!63.68!SOX15;;chr11:120107344..120107351,+!p1@POU2F3!1.49!36.20!POU2F3;;chr5:2751762..2751784,-!p1@IRX2!1.46!28.15!IRX2;;chr3:111314186..111314204,-!p1@ZBED2!1.43!26.14!ZBED2;;chr6:34524025..34524045,-!p3@SPDEF!1.42!25.47!SPDEF;;chr6:10412600..10412637,-!p1@TFAP2A!1.38!38.21!TFAP2A;;chr1:2461692..2461710,-!p1@HES5!1.32!20.11!HES5;;chr19:45908292..45908374,-!p1@PPP1R13L!1.29!158.86!PPP1R13L;;chr2:46524897..46524911,+!p2@EPAS1!1.20!40.89!EPAS1;;chr6:10415484..10415508,-!p3@TFAP2A!1.20!14.75!TFAP2A;;chr1:201979743..201979762,+!p1@ELF3!1.20!14.75!ELF3;;chr12:66218255..66218304,+!p3@HMGA2!1.19!38.88!HMGA2;;chr11:65667884..65667895,-!p2@FOSL1!1.18!54.29!FOSL1;;chr14:38064429..38064486,-!p1@FOXA1!1.18!14.08!FOXA1;;chr14:90085820..90085840,-!p6@FOXN3!1.14!12.74!FOXN3;;chr17:80797886..80797906,-!p1@ZNF750!1.14!12.74!ZNF750;;chr8:102504651..102504683,+!p1@GRHL2!1.09!11.40!GRHL2;;chr8:128748308..128748324,+!p2@MYC!1.08!304.99!MYC;;chr14:37131058..37131139,+!p1@PAX9!1.04!10.05!PAX9;;chr22:19746969..19746987,+!p2@TBX1!1.04!10.05!TBX1;;chr2:45236540..45236577,-!p1@SIX2!1.04!10.05!SIX2;;chr19:45579725..45579743,-!p1@ZNF296!1.03!44.24!ZNF296;;chr11:129245526..129245553,+!p1@BARX2!1.02!9.38!BARX2;;chr17:41623692..41623715,-!p1@ETV4!0.99!38.21!ETV4;;chr1:201979703..201979721,+!p2@ELF3!0.99!8.71!ELF3;;chr2:239756671..239756732,+!p1@TWIST2!0.97!27.48!TWIST2;;chr6:34204672..34204692,+!p1@HMGA1!0.96!931.72!HMGA1;;chr2:122042770..122042785,-!p1@TFCP2L1!0.96!8.04!TFCP2L1;;chr1:24645921..24645973,+!p2@GRHL3!0.96!8.04!GRHL3;;chr14:21566731..21566836,-!p1@ZNF219!0.94!86.47!ZNF219;;chr8:49833948..49833973,-!p2@SNAI2!0.94!50.27!SNAI2;;chr12:66218212..66218244,+!p5@HMGA2!0.94!11.40!HMGA2;;chr17:41623009..41623053,-!p4@ETV4!0.92!12.07!ETV4;;chr14:37051798..37051831,-!p1@NKX2-8!0.92!7.37!NKX2-8;;chr5:2751785..2751808,-!p2@IRX2!0.92!7.37!IRX2;;chr5:3595977..3595999,+!p1@IRX1!0.92!7.37!IRX1;;chr6:10412576..10412599,-!p5@TFAP2A!0.92!7.37!TFAP2A;;chr1:209979449..209979460,-!p3@IRF6!0.92!7.37!IRF6;;chr12:53614115..53614154,-!p1@RARG!0.91!40.22!RARG;;chr17:41622925..41622976,-!p3@ETV4!0.90!10.72!ETV4;;chr11:34642656..34642667,+!p2@EHF!0.89!6.70!EHF;;chr11:34645791..34645836,+!p3@EHF!0.89!6.70!EHF;;chr2:63277948..63277974,+!p1@OTX1!0.89!6.70!OTX1;;chr2:68592406..68592424,+!p1@PLEK!0.89!6.70!PLEK;;chr13:73633131..73633149,+!p1@KLF5!0.88!74.40!KLF5;;chr3:5021026..5021035,+!p5@BHLHE40!0.87!8.04!BHLHE40;;chr11:65667846..65667868,-!p1@FOSL1!0.86!176.96!FOSL1;;chr12:66218598..66218645,+!p2@HMGA2!0.86!30.16!HMGA2;;chr8:128747757..128747800,+!p7@MYC!0.86!8.71!MYC;;chr9:100615499..100615519,+!p1@FOXE1!0.85!6.03!FOXE1;;chr3:111314230..111314241,-!p2@ZBED2!0.85!6.03!ZBED2;;chr20:18038521..18038571,-!p1@OVOL2!0.85!6.03!OVOL2;;chr1:8938709..8938720,-!p3@ENO1!0.84!309.01!ENO1;;chr15:67418119..67418162,+!p5@SMAD3!0.84!6.70!SMAD3;;chr1:8934931..8934947,-!p4@ENO1!0.83!20.11!ENO1;;chr12:48298765..48298783,-!p2@VDR!0.83!12.74!VDR;;chr8:128747661..128747703,+!p6@MYC!0.83!8.04!MYC;;chr20:55204351..55204377,+!p1@TFAP2C!0.82!7.37!TFAP2C;;chr17:41623259..41623278,-!p7@ETV4!0.82!6.70!ETV4;;chr17:41623667..41623682,-!p8@ETV4!0.82!6.03!ETV4;;chr17:45928443..45928473,-!p2@SP6!0.80!5.36!SP6;;chr1:24645832..24645853,+!p1@GRHL3!0.80!5.36!GRHL3;;chr1:50889103..50889145,-!p1@DMRTA2!0.80!5.36!DMRTA2;;chr2:63277978..63277995,+!p2@OTX1!0.80!5.36!OTX1;;chr5:3595934..3595957,+!p2@IRX1!0.80!5.36!IRX1;;chr6:10413188..10413249,-!p7@TFAP2A!0.80!5.36!TFAP2A;;chr17:3571863..3571881,-!p1@TAX1BP3!0.79!398.83!TAX1BP3;;chr12:27485762..27485776,+!p3@ARNTL2!0.79!14.75!ARNTL2;;chr12:53625966..53626012,-!p2@RARG!0.78!14.08!RARG;;chr8:49833978..49833996,-!p1@SNAI2!0.77!111.94!SNAI2;;chr12:48298785..48298828,-!p1@VDR!0.77!28.15!VDR;;chr11:129245736..129245758,+!p2@BARX2!0.76!4.69!BARX2;;chr11:65554528..65554546,+!p1@OVOL1!0.76!4.69!OVOL1;;chr5:134370033..134370042,-!p5@PITX1!0.76!4.69!PITX1;;chr15:83953373..83953386,-!p2@BNC1!0.76!4.69!BNC1;;chr17:45928521..45928539,-!p1@SP6!0.76!4.69!SP6;;chr17:8027418..8027432,-!p1@HES7!0.76!4.69!HES7;;chr18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AWR;;chr9:110252074..110252079,-!p3@KLF4!0.27!2.01!KLF4;;chr1:10754477..10754517,-!p1@CASZ1!0.27!2.01!CASZ1;;chr1:151431811..151431832,-!p3@POGZ!0.27!2.01!POGZ;;chr9:35732312..35732324,+!p4@CREB3!0.27!2.01!CREB3;;chr9:137218262..137218273,+!p5@RXRA!0.27!2.01!RXRA;;chr6:21597431..21597447,+!p8@SOX4!0.27!1.34!SOX4;;chr22:41697484..41697496,+!p3@ZC3H7B!0.27!1.34!ZC3H7B;;chr2:61108808..61108821,+!p3@REL!0.27!1.34!REL;;chr11:45202580..45202606,+!p@chr11:45202580..45202606,+!0.27!1.34!PRDM11;;chr11:706938..707008,-!p3@DEAF1!0.27!1.34!DEAF1;;chr14:75746722..75746777,+!p2@FOS!0.27!1.34!FOS;;chr1:26496382..26496457,+!p1@ZNF593!0.26!100.55!ZNF593;;chr11:57103327..57103372,-!p1@SSRP1!0.26!78.43!SSRP1;;chr19:19302931..19302974,-!p1@MEF2BNB-MEF2B,p1@MEF2BNB,p1@MEF2B!0.26!40.89!MEF2B;;chr10:77161504..77161530,-!p1@ZNF503!0.26!21.45!ZNF503;;chr12:80084768..80084821,-!p2@PAWR!0.26!10.72!PAWR;;chr11:46722560..46722595,+!p1@ZNF408!0.26!8.04!ZNF408;;chr6:7107999..7108031,+!p2@RREB1!0.26!8.04!RREB1;;chr3:48282587..48282603,+!p1@ZNF589!0.26!6.70!ZNF589;;chr2:239148671..239148686,-!p1@HES6!0.26!5.36!HES6;;chr16:67596384..67596411,+!p3@CTCF!0.26!3.35!CTCF;;chr19:53662295..53662319,-!p1@ZNF347!0.26!3.35!ZNF347;;chr19:56652621..56652641,+!p2@ZNF444!0.26!2.68!ZNF444;;chr18:3449720..3449749,+!p2@TGIF1!0.26!2.68!TGIF1;;chr19:17356436..17356481,-!p3@NR2F6!0.26!2.01!NR2F6;;chr13:45151509..45151539,-!p6@TSC22D1!0.26!2.01!TSC22D1;;chr19:50168861..50168873,-!p3@IRF3!0.26!2.01!IRF3;;chr9:73029018..73029042,-!p6@KLF9!0.26!1.34!KLF9;;chr6:43139102..43139112,+!p7@SRF!0.26!1.34!SRF;;chr7:149470540..149470596,-!p2@ZNF467!0.26!1.34!ZNF467;;chr11:6947720..6947812,+!p1@ZNF215!0.26!1.34!ZNF215;;chr11:695731..695765,-!p5@DEAF1!0.26!1.34!DEAF1;;chr12:72056773..72056796,+!p3@THAP2!0.26!1.34!THAP2;;chr14:35873101..35873119,-!p6@NFKBIA!0.26!1.34!NFKBIA;;chr2:28616604..28616615,+!p6@FOSL2!0.26!1.34!FOSL2;;chr3:168865194..168865245,-!p3@MECOM!0.26!1.34!MECOM;;chr6:35464817..35464894,-!p1@TEAD3!0.25!24.13!TEAD3;;chr19:50169064..50169121,-!p1@IRF3!0.25!22.12!IRF3;;chr12:124873357..124873401,-!p1@NCOR2!0.25!18.10!NCOR2;;chr14:62162258..62162269,+!p2@HIF1A!0.25!14.75!HIF1A;;chr6:43139153..43139232,+!p1@SRF!0.25!14.75!SRF;;chr19:1863591..1863611,-!p2@KLF16!0.25!14.75!KLF16;;chr19:19496577..19496619,+!p5@GATAD2A!0.25!4.69!GATAD2A;;chr2:217277480..217277505,+!p2@SMARCAL1!0.25!4.69!SMARCAL1;;chr7:99613250..99613264,+!p2@ZKSCAN1!0.25!4.02!ZKSCAN1;;chr6:41514005..41514026,+!p3@FOXP4!0.25!2.68!FOXP4;;chr10:44144264..44144286,-!p2@ZNF32!0.25!2.68!ZNF32;;chr3:150126904..150126958,+!p7@TSC22D2!0.25!2.01!TSC22D2;;chr4:146859588..146859615,-!p4@ZNF827!0.25!1.34!ZNF827;;chr9:2017159..2017186,+!p12@SMARCA2!0.25!1.34!SMARCA2;;chr16:30569801..30569845,-!p4@ZNF764!0.25!1.34!ZNF764;;chr16:31085961..31086009,+!p2@ZNF646!0.25!1.34!ZNF646;;chr16:3930724..3930735,-!p2@CREBBP!0.25!1.34!CREBBP;;chr19:33865009..33865090,+!p3@CEBPG!0.25!1.34!CEBPG;;chr20:49547674..49547685,-!p7@ADNP!0.25!1.34!ADNP;;chr20:62680984..62680999,-!p1@SOX18!0.25!1.34!SOX18;;chr20:30193083..30193098,+!p1@ID1!0.24!128.70!ID1;;chr2:74374995..74375055,-!p1@BOLA3!0.24!69.71!BOLA3;;chr12:57505121..57505179,-!p1@STAT6!0.24!61.00!STAT6;;chr19:3572925..3573014,+!p1@HMG20B!0.24!46.25!HMG20B;;chr18:47807845..47807918,-!p1@MBD1!0.24!26.81!MBD1;;chr19:44100728..44100804,+!p1@SRRM5,p1@ZNF576!0.24!14.75!ZNF576;;chr8:48650697..48650708,-!p2@CEBPD!0.24!11.40!CEBPD;;chr8:144329092..144329140,+!p1@ZFP41!0.24!10.72!ZFP41;;chr6:43138999..43139017,+!p2@SRF!0.24!8.71!SRF;;chr19:926001..926046,+!p1@ARID3A!0.24!4.69!ARID3A;;chr1:23694794..23694863,-!p1@ZNF436!0.24!4.69!ZNF436;;chr9:109625401..109625458,+!p1@ZNF462!0.24!3.35!ZNF462;;chr6:42419514..42419606,-!p1@TRERF1!0.24!2.68!TRERF1;;chr20:48807171..48807234,+!p4@CEBPB!0.24!2.68!CEBPB;;chr17:7382911..7382932,-!p4@ZBTB4!0.24!2.68!ZBTB4;;chr18:5295679..5295734,-!p2@ZFP161!0.24!2.68!ZFP161;;chr2:121493425..121493474,+!p1@GLI2!0.24!2.68!GLI2;;chr2:214015111..214015179,-!p1@IKZF2!0.24!2.01!IKZF2;;chr19:56988677..56988729,-!p1@ZNF667!0.24!2.01!ZNF667;;chr12:53574398..53574412,+!p3@ZNF740!0.24!2.01!ZNF740;;chr3:71355163..71355209,-!p5@FOXP1!0.24!1.34!FOXP1;;chr4:87857491..87857519,+!p10@AFF1!0.24!1.34!AFF1;;chr17:46127997..46128015,+!p5@NFE2L1!0.24!1.34!NFE2L1;;chr1:170633348..170633399,+!p2@PRRX1!0.24!1.34!PRRX1;;chr22:39916558..39916579,+!p1@ATF4!0.23!444.41!ATF4;;chr22:42229100..42229146,+!p1@SREBF2!0.23!152.16!SREBF2;;chr1:59249707..59249727,-!p1@JUN!0.23!65.02!JUN;;chr21:36260980..36261011,-!p1@RUNX1!0.23!44.24!RUNX1;;chr12:57916584..57916682,+!p1@MBD6!0.23!30.16!MBD6;;chr8:145159415..145159438,+!p2@MAF1!0.23!29.49!MAF1;;chr1:247495140..247495177,-!p1@ZNF496!0.23!16.09!ZNF496;;chr22:31742303..31742350,-!p1@PATZ1!0.23!16.09!PATZ1;;chr19:35759424..35759454,+!p2@USF2!0.23!8.04!USF2;;chr2:157189180..157189290,-!p1@NR4A2!0.23!7.37!NR4A2;;chr2:28616358..28616380,+!p3@FOSL2!0.23!7.37!FOSL2;;chr1:8484314..8484348,-!p7@RERE!0.23!3.35!RERE;;chr9:137218362..137218385,+!p4@RXRA!0.23!3.35!RXRA;;ch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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000066;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000223;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000307;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002076;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002368;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002632;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000065;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001558;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0003126;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0005181;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0008947
 |ffid_belonging_in_development=CL:0000223,CL:0000377
 |fonse_cell_line=
@@ Line 38: / Line 44: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Tracheal%2520Epithelial%2520Cells%252c%2520donor2.CNhs11993.11369-118A1.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Tracheal%2520Epithelial%2520Cells%252c%2520donor2.CNhs11993.11369-118A1.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Tracheal%2520Epithelial%2520Cells%252c%2520donor2.CNhs11993.11369-118A1.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Tracheal%2520Epithelial%2520Cells%252c%2520donor2.CNhs11993.11369-118A1.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Tracheal%2520Epithelial%2520Cells%252c%2520donor2.CNhs11993.11369-118A1.hg38.nobarcode.ctss.bed.gz
 |id=FF:11369-118A1
 |is_a=EFO:0002091;;FF:0000189
 |is_obsolete=
+|library_id=CNhs11993
+|library_id_phase_based=2:CNhs11993
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11369
+|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10006.GGTAGC.11369
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11369
+|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10006.GGTAGC.11369
 |name=Tracheal Epithelial Cells, donor2
 |namespace=FANTOM5
@@ Line 46: / Line 65: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs11993,LSID837,release011,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=SRhi10006,,,
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@@ Line 62: / Line 82: @@
 |rna_tube_id=118A1
 |rna_weight_ug=10
+|rnaseq_library_id=SRhi10006.GGTAGC
 |sample_age=45
+|sample_category=primary cells
 |sample_cell_catalog=N/A
 |sample_cell_line=
@@ Line 84: / Line 106: @@
 |top_motifs=PPARG:2.6942259901;TP53:2.34604652751;TBX4,5:2.21442870651;POU2F1..3:2.17551536297;TBP:1.8757432982;NR5A1,2:1.71758701792;VSX1,2:1.552138092;ZNF148:1.49273742398;ZEB1:1.48910767855;XCPE1{core}:1.39925498184;SNAI1..3:1.2920564999;MYOD1:1.27213821365;PAX1,9:1.26665777458;GTF2A1,2:1.25752175819;ZNF423:1.23576593634;HMX1:1.13317630003;TFAP2{A,C}:1.07492587528;SP1:1.05379745987;NKX2-3_NKX2-5:1.04153407908;TFCP2:0.984874002322;GLI1..3:0.969182518998;TEAD1:0.865321542613;MTF1:0.865241340818;RXRA_VDR{dimer}:0.834076537571;NANOG:0.800102934819;NFIL3:0.782037027414;FOS_FOS{B,L1}_JUN{B,D}:0.769983179311;LMO2:0.757989216364;ADNP_IRX_SIX_ZHX:0.661197228779;TLX1..3_NFIC{dimer}:0.642539447429;ARID5B:0.640828897464;POU6F1:0.632026663294;HAND1,2:0.624974145619;ZNF238:0.621516568629;EBF1:0.547015443186;BACH2:0.530640568267;NFE2:0.461799175794;TFAP4:0.446722418276;ONECUT1,2:0.439972884676;ESR1:0.403383963044;bHLH_family:0.388523504859;AR:0.384601748163;HIF1A:0.379277878143;FOSL2:0.367516749338;GZF1:0.36140132014;RXR{A,B,G}:0.32523614113;STAT5{A,B}:0.317030811529;POU1F1:0.283295162025;GFI1:0.275927482333;IKZF1:0.25758491696;REST:0.228400235801;GFI1B:0.211779216843;PBX1:0.19675736531;ZBTB6:0.174231120572;ETS1,2:0.173015123027;SMAD1..7,9:0.160666640233;PAX2:0.160071131729;FOXM1:0.148660741309;ZIC1..3:0.1389665327;LEF1_TCF7_TCF7L1,2:0.128000123036;SPZ1:0.114875669498;HOX{A5,B5}:0.074981249617;SRF:0.0592558938388;SOX17:0.0369902003146;GCM1,2:0.0283516701044;HLF:0.0221983617543;HNF4A_NR2F1,2:0.0158334973078;MAZ:0.0144461948783;CEBPA,B_DDIT3:0.00456538815179;OCT4_SOX2{dimer}:-0.00761355161511;SOX{8,9,10}:-0.0113665336629;POU3F1..4:-0.0201565866097;SOX2:-0.0415337524633;JUN:-0.0463719784915;NFE2L1:-0.056456495106;EP300:-0.0602012471321;NFKB1_REL_RELA:-0.0674864292092;ZNF143:-0.0845010008589;CDC5L:-0.0883727068156;HIC1:-0.094460121901;NFY{A,B,C}:-0.10124757798;FOXQ1:-0.103653437053;NKX3-2:-0.108587414686;GATA6:-0.121002006264;TFDP1:-0.121027828757;ELF1,2,4:-0.137923035224;TFAP2B:-0.160885252024;E2F1..5:-0.164700697801;GTF2I:-0.16653640453;PAX5:-0.169551170343;RREB1:-0.175399197963;CRX:-0.190111696617;RUNX1..3:-0.194140225855;NKX2-2,8:-0.202047474533;SPIB:-0.206803657947;NR1H4:-0.208306481268;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.23793500668;ELK1,4_GABP{A,B1}:-0.244209190319;POU5F1:-0.253502466874;FOXL1:-0.269073628915;FOX{F1,F2,J1}:-0.277233975007;NFE2L2:-0.291107028222;UFEwm:-0.291854158824;HES1:-0.321711853969;YY1:-0.329717593567;STAT2,4,6:-0.347422857917;SPI1:-0.348068003513;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.3620130119;RBPJ:-0.365263828858;MED-1{core}:-0.367424676398;HNF1A:-0.371354183157;NR6A1:-0.372976244462;LHX3,4:-0.378342219308;PITX1..3:-0.379811795406;ESRRA:-0.43139646959;PAX8:-0.456148520952;EGR1..3:-0.45693312203;KLF4:-0.469922214658;PDX1:-0.490885200492;EN1,2:-0.50749355547;HOX{A4,D4}:-0.519973838169;IRF7:-0.525266730232;ATF2:-0.547722927795;HOX{A6,A7,B6,B7}:-0.558481749364;NKX2-1,4:-0.560519677302;PATZ1:-0.569776027102;MEF2{A,B,C,D}:-0.603282103227;MYFfamily:-0.60989919969;CUX2:-0.612805150833;MYBL2:-0.619126296622;ZFP161:-0.625878929834;RFX1:-0.644369196574;TLX2:-0.67052026771;NR3C1:-0.679581181822;MYB:-0.681155166696;NHLH1,2:-0.683015365526;HSF1,2:-0.685460047003;ATF5_CREB3:-0.687757787736;CREB1:-0.704968601435;ALX4:-0.724864747875;HOXA9_MEIS1:-0.732682773359;NANOG{mouse}:-0.73500280991;TAL1_TCF{3,4,12}:-0.735366618138;NFATC1..3:-0.742468495276;NRF1:-0.794947896442;FOXN1:-0.804344162631;RFX2..5_RFXANK_RFXAP:-0.824843688934;ZNF384:-0.827667163943;RORA:-0.835696822426;ATF4:-0.840676453131;TOPORS:-0.861383327958;PRRX1,2:-0.880769433166;MZF1:-0.893074225108;T:-0.89609490145;PAX6:-0.919648485465;PAX4:-0.927496816923;TGIF1:-0.968494627174;MAFB:-1.00160057695;IRF1,2:-1.00775551364;PRDM1:-1.02907576529;TEF:-1.03480730038;DBP:-1.04059721307;BREu{core}:-1.04148693823;MTE{core}:-1.0727698555;HBP1_HMGB_SSRP1_UBTF:-1.16314193307;ZBTB16:-1.20675943594;SOX5:-1.22054037915;AHR_ARNT_ARNT2:-1.28885472546;ATF6:-1.30479174331;ALX1:-1.3156323721;FOX{D1,D2}:-1.31789431337;PAX3,7:-1.34024809722;DMAP1_NCOR{1,2}_SMARC:-1.35473629295;NKX3-1:-1.36536301669;AIRE:-1.39408984713;SREBF1,2:-1.43823328953;NFIX:-1.44286434082;CDX1,2,4:-1.46205933856;HMGA1,2:-1.50973897376;XBP1:-1.53008245563;FOXO1,3,4:-1.53537369165;STAT1,3:-1.53958777367;FOXP3:-1.54891889565;FOXA2:-1.55322503285;GATA4:-1.60816971825;FOXP1:-1.69577959881;FOX{I1,J2}:-1.76075181733;FOXD3:-1.77825191249;NKX6-1,2:-1.79681095893;EVI1:-1.80583899834;IKZF2:-1.83048592096;BPTF:-2.11728546848
 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11369-118A1;search_select_hide=table117:FF:11369-118A1
 }}

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FF:11369-118A1: Difference between revisions

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Latest revision as of 17:55, 4 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0