FFCP PHASE1:Hg19::chr5:146889655..146889679,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr5:146889655..146889679,-
|short_description=p4@DPYSL3
|description=CAGE_peak_4_at_DPYSL3_5end
|association_with_transcript=-36bp_to_ENST00000343218,NM_001197...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=1809 | |EntrezGene=1809 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=3015 | |HGNC=3015 | ||
|TSSclassifier=strong | |||
|UniProt=B3SXQ8,Q14195,Q6DEN2 | |UniProt=B3SXQ8,Q14195,Q6DEN2 | ||
|association_with_transcript=-36bp_to_ENST00000343218,NM_001197294_5end | |||
|cluster_id=chr5:146889655..146889679,- | |||
|coexpression_cluster_id=C1527 | |||
|description=CAGE_peak_4_at_DPYSL3_5end | |||
|id=chr5:146889655..146889679,- | |||
|ontology_enrichment_celltype=CL:0000055!2.32e-37!180;CL:0000222!2.42e-18!119;CL:0000192!5.08e-18!42;CL:0000514!5.08e-18!42;CL:0000183!1.05e-17!59;CL:0000393!4.73e-17!60;CL:0000211!4.73e-17!60;CL:0000187!9.27e-17!54;CL:0000359!3.52e-16!32;CL:0000680!5.45e-16!57;CL:0000056!5.45e-16!57;CL:0000355!5.45e-16!57;CL:0002321!4.50e-15!248;CL:0000220!5.80e-15!246;CL:0000057!1.24e-14!75;CL:0000133!3.33e-08!59;CL:0002319!3.83e-08!25;CL:0000243!5.83e-07!15;CL:0000125!5.83e-07!15;CL:0000030!5.83e-07!15;CL:0000339!5.83e-07!15;CL:0000095!6.92e-07!17;CL:0000123!6.92e-07!17;CL:0002539!8.18e-07!10 | |||
|ontology_enrichment_celltype_v019=CL:0000359;4.02e-16;32!CL:0000192;1.45e-13;43!CL:0000187;2.02e-09;55!CL:0000393;1.47e-08;61!CL:0000211;1.47e-08;61!CL:0002319;1.61e-08;25!CL:0000134;1.63e-07;55!CL:0000048;1.81e-07;58!CL:0000243;2.06e-07;15!CL:0000125;2.06e-07;15!CL:0000095;2.85e-07;17!CL:0002539;3.22e-07;10!CL:0000723;9.55e-07;61 | |||
|ontology_enrichment_celltype_v019_2=CL:0000192,7.53e-19,43;CL:0000514,7.53e-19,43;CL:0000222,1.82e-18,121;CL:0000393,9.62e-18,61;CL:0000211,9.62e-18,61;CL:0000187,2.10e-17,55;CL:0000359,3.74e-17,32;CL:0000680,2.88e-16,58;CL:0000056,2.88e-16,58;CL:0000355,2.88e-16,58;CL:0000057,1.94e-15,76;CL:0002321,1.61e-13,250;CL:0002319,1.39e-08,25;CL:0000133,3.76e-08,59;CL:0000243,2.53e-07,15;CL:0000125,2.53e-07,15;CL:0000030,2.53e-07,15;CL:0000339,2.53e-07,15;CL:0000095,3.04e-07,17;CL:0000123,3.04e-07,17;CL:0002539,3.64e-07,10 | |||
|ontology_enrichment_development_v019=CL:0000514;1.45e-13;43!CL:0000355;2.50e-08;58!CL:0000339;2.06e-07;15 | |||
|ontology_enrichment_disease=DOID:2394!5.05e-07!14 | |||
|ontology_enrichment_disease_v019=DOID:2394;1.64e-07;14 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,1.56e-07,14 | |||
|ontology_enrichment_uberon=UBERON:0002049!1.54e-24!79;UBERON:0007798!1.54e-24!79;UBERON:0004872!1.57e-23!84;UBERON:0001981!7.11e-23!60;UBERON:0007500!7.11e-23!60;UBERON:0004537!7.11e-23!60;UBERON:0006965!7.11e-23!60;UBERON:0000119!4.11e-21!312;UBERON:0000483!6.29e-21!309;UBERON:0001637!6.91e-21!42;UBERON:0003509!6.91e-21!42;UBERON:0004572!6.91e-21!42;UBERON:0000055!2.38e-20!69;UBERON:0003914!2.15e-19!118;UBERON:0004535!1.45e-18!110;UBERON:0001009!6.76e-18!113;UBERON:0000468!9.02e-18!659;UBERON:0000477!3.05e-17!286;UBERON:0000475!1.04e-16!365;UBERON:0004573!1.18e-16!33;UBERON:0004571!1.18e-16!33;UBERON:0000914!1.36e-16!83;UBERON:0002329!1.36e-16!83;UBERON:0003077!1.36e-16!83;UBERON:0003059!1.36e-16!83;UBERON:0007282!1.36e-16!83;UBERON:0009618!1.36e-16!83;UBERON:0007285!1.36e-16!83;UBERON:0000481!3.17e-16!347;UBERON:0004290!5.14e-16!70;UBERON:0000467!9.59e-16!625;UBERON:0002385!1.11e-15!63;UBERON:0001015!1.11e-15!63;UBERON:0000383!1.11e-15!63;UBERON:0000480!1.79e-15!626;UBERON:0001134!2.36e-15!61;UBERON:0002036!2.36e-15!61;UBERON:0003082!2.36e-15!61;UBERON:0005256!3.08e-15!143;UBERON:0004111!4.34e-15!241;UBERON:0000025!1.88e-14!194;UBERON:0000486!2.99e-14!82;UBERON:0000490!3.15e-14!138;UBERON:0000922!1.00e-12!612;UBERON:0002050!1.18e-11!605;UBERON:0005423!1.18e-11!605;UBERON:0000923!1.73e-11!604;UBERON:0005291!1.73e-11!604;UBERON:0006598!1.73e-11!604;UBERON:0002532!1.73e-11!604;UBERON:0000947!4.90e-11!21;UBERON:0010191!4.90e-11!21;UBERON:0004121!6.99e-09!169;UBERON:0000924!1.59e-08!173;UBERON:0006601!1.59e-08!173;UBERON:0002100!3.35e-08!216;UBERON:0003104!7.39e-08!238;UBERON:0009142!7.39e-08!238;UBERON:0001135!2.31e-07!15;UBERON:0001801!2.39e-07!14;UBERON:0000970!4.14e-07!20;UBERON:0000064!4.95e-07!219;UBERON:0004237!8.18e-07!10;UBERON:0004695!8.18e-07!10;UBERON:0002111!8.18e-07!10;UBERON:0004178!8.18e-07!10;UBERON:0000019!9.49e-07!19;UBERON:0000047!9.49e-07!19;UBERON:0004088!9.49e-07!19;UBERON:0003072!9.49e-07!19;UBERON:0003071!9.49e-07!19;UBERON:0004128!9.49e-07!19;UBERON:0000948!9.54e-07!24;UBERON:0005498!9.54e-07!24;UBERON:0004140!9.54e-07!24;UBERON:0009881!9.54e-07!24;UBERON:0004141!9.54e-07!24;UBERON:0003084!9.54e-07!24;UBERON:0007005!9.54e-07!24;UBERON:0004139!9.54e-07!24;UBERON:0004291!9.54e-07!24 | |||
|ontology_enrichment_uberon_v019=UBERON:0004573;2.55e-16;33!UBERON:0004571;2.55e-16;33!UBERON:0001637;4.18e-16;42!UBERON:0003509;4.18e-16;42!UBERON:0004572;4.18e-16;42!UBERON:0007500;2.65e-13;56!UBERON:0001981;2.65e-13;56!UBERON:0004537;2.65e-13;56!UBERON:0000947;9.05e-12;21!UBERON:0010191;9.05e-12;21!UBERON:0003914;7.97e-11;74!UBERON:0002049;5.81e-10;75!UBERON:0007798;5.81e-10;75!UBERON:0000055;1.06e-09;65!UBERON:0001135;1.07e-07;15!UBERON:0001801;1.40e-07;14!UBERON:0004237;3.22e-07;10!UBERON:0004695;3.22e-07;10!UBERON:0002111;3.22e-07;10!UBERON:0004178;3.22e-07;10!UBERON:0000970;3.86e-07;20!UBERON:0000019;9.08e-07;19!UBERON:0000047;9.08e-07;19!UBERON:0004088;9.08e-07;19!UBERON:0010230;9.08e-07;19 | |||
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| ||
|short_description=p4@DPYSL3 | |||
}} | }} |
Latest revision as of 22:20, 15 September 2015
Short description: | p4@DPYSL3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_DPYSL3_5end |
Coexpression cluster: | C1527_glioblastoma_Lens_mesothelioma_mesenchymal_granulosa_Ciliary_Smooth |
Association with transcript: | -36bp_to_ENST00000343218, NM_001197294_5end |
EntrezGene: | DPYSL3 |
HGNC: | 3015 |
UniProt: | B3SXQ8Q14195Q6DEN2 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
smooth muscle cell | 7.53e-19 | 43 |
smooth muscle myoblast | 7.53e-19 | 43 |
mesodermal cell | 1.82e-18 | 121 |
electrically responsive cell | 9.62e-18 | 61 |
electrically active cell | 9.62e-18 | 61 |
muscle cell | 2.10e-17 | 55 |
vascular associated smooth muscle cell | 3.74e-17 | 32 |
muscle precursor cell | 2.88e-16 | 58 |
myoblast | 2.88e-16 | 58 |
multi-potent skeletal muscle stem cell | 2.88e-16 | 58 |
fibroblast | 1.94e-15 | 76 |
embryonic cell | 1.61e-13 | 250 |
neural cell | 1.39e-08 | 25 |
neurectodermal cell | 3.76e-08 | 59 |
glial cell (sensu Vertebrata) | 2.53e-07 | 15 |
glial cell | 2.53e-07 | 15 |
glioblast | 2.53e-07 | 15 |
glioblast (sensu Vertebrata) | 2.53e-07 | 15 |
neuron associated cell | 3.04e-07 | 17 |
neuron associated cell (sensu Vertebrata) | 3.04e-07 | 17 |
aortic smooth muscle cell | 3.64e-07 | 10 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 1.56e-07 | 14 |