FFCP PHASE1:Hg19::chr2:109271481..109271493,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3987 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6616 | |||
|TSSclassifier=strong | |||
|UniProt=B7Z7R3 | |||
|association_with_transcript=0bp_to_ENST00000542845_5end | |||
|cluster_id=chr2:109271481..109271493,+ | |||
|description=CAGE_peak_6_at_LIMS1_5end | |||
|id=chr2:109271481..109271493,+ | |||
|ontology_enrichment_celltype=CL:0000222!1.39e-25!119;CL:0000183!5.31e-22!59;CL:0000680!5.47e-22!57;CL:0000056!5.47e-22!57;CL:0000355!5.47e-22!57;CL:0000187!3.31e-20!54;CL:0000055!1.28e-19!180;CL:0000359!7.03e-18!32;CL:0002139!1.31e-17!24;CL:0000393!8.30e-17!60;CL:0000211!8.30e-17!60;CL:0000192!8.40e-17!42;CL:0000514!8.40e-17!42;CL:0000115!1.02e-14!35;CL:0000071!4.30e-13!18;CL:0002546!4.30e-13!18;CL:0002078!1.17e-12!44;CL:0002539!1.96e-08!10;CL:0000220!7.80e-08!246;CL:0002321!1.59e-07!248;CL:1000413!2.02e-07!9;CL:0002494!3.28e-07!16;CL:0000057!9.30e-07!75 | |||
|ontology_enrichment_celltype_v019=CL:0002139;2.24e-26;24!CL:0000115;3.17e-21;36!CL:0000071;2.51e-19;18!CL:0000359;1.23e-18;32!CL:0002078;6.97e-14;45!CL:0000192;5.58e-11;43!CL:0002494;7.17e-11;16!CL:1000413;1.51e-10;9!CL:0002539;2.26e-10;10!CL:0000134;2.57e-09;55!CL:0000187;1.07e-08;55!CL:0002138;1.23e-08;6!CL:0000048;1.79e-08;58!CL:0000723;6.48e-08;61!CL:0000213;7.16e-08;58!CL:0000215;7.16e-08;58!CL:0002544;7.97e-08;6!CL:0002543;8.32e-07;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0000222,9.89e-30,121;CL:0002139,2.00e-26,24;CL:0000115,3.94e-25,36;CL:0002078,1.78e-20,45;CL:0000359,7.41e-20,32;CL:0000071,2.05e-19,18;CL:0002546,2.05e-19,18;CL:0000680,1.39e-17,58;CL:0000056,1.39e-17,58;CL:0000355,1.39e-17,58;CL:0000187,2.49e-15,55;CL:0000192,6.64e-15,43;CL:0000514,6.64e-15,43;CL:0000393,9.05e-13,61;CL:0000211,9.05e-13,61;CL:0000213,1.27e-11,58;CL:0000215,1.27e-11,58;CL:0002494,5.14e-11,16;CL:1000413,1.22e-10,9;CL:0002539,1.80e-10,10;CL:0005020,1.37e-08,6;CL:0002138,1.37e-08,6;CL:0005022,1.37e-08,6;CL:0002544,7.04e-08,6;CL:0002321,2.27e-07,250;CL:0000048,2.46e-07,427;CL:0000723,7.19e-07,433;CL:0002543,8.24e-07,6 | |||
|ontology_enrichment_development_v019=CL:0002546;2.51e-19;18!CL:0000514;5.58e-11;43!CL:0000355;2.02e-09;58!CL:0005022;1.23e-08;6!CL:0000222;3.52e-08;121 | |||
|ontology_enrichment_disease=DOID:2394!9.78e-10!14 | |||
|ontology_enrichment_disease_v019=DOID:2394;7.40e-12;14 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,8.08e-12,14 | |||
|ontology_enrichment_uberon=UBERON:0000055!4.64e-40!69;UBERON:0002049!5.79e-39!79;UBERON:0007798!5.79e-39!79;UBERON:0004872!3.06e-37!84;UBERON:0001981!3.20e-37!60;UBERON:0007500!3.20e-37!60;UBERON:0004537!3.20e-37!60;UBERON:0006965!3.20e-37!60;UBERON:0001009!3.51e-33!113;UBERON:0004535!5.61e-33!110;UBERON:0003914!3.06e-29!118;UBERON:0001637!3.00e-27!42;UBERON:0003509!3.00e-27!42;UBERON:0004572!3.00e-27!42;UBERON:0004290!2.26e-23!70;UBERON:0002385!3.95e-23!63;UBERON:0001015!3.95e-23!63;UBERON:0000383!3.95e-23!63;UBERON:0001134!4.29e-23!61;UBERON:0002036!4.29e-23!61;UBERON:0003082!4.29e-23!61;UBERON:0004573!8.16e-22!33;UBERON:0004571!8.16e-22!33;UBERON:0000914!3.54e-19!83;UBERON:0002329!3.54e-19!83;UBERON:0003077!3.54e-19!83;UBERON:0003059!3.54e-19!83;UBERON:0007282!3.54e-19!83;UBERON:0009618!3.54e-19!83;UBERON:0007285!3.54e-19!83;UBERON:0000490!2.28e-18!138;UBERON:0000486!2.48e-17!82;UBERON:0004111!3.43e-15!241;UBERON:0000947!4.57e-15!21;UBERON:0010191!4.57e-15!21;UBERON:0005256!3.14e-14!143;UBERON:0000025!4.57e-14!194;UBERON:0001986!4.30e-13!18;UBERON:0004638!4.30e-13!18;UBERON:0004852!4.30e-13!18;UBERON:0000477!5.12e-13!286;UBERON:0000119!8.95e-13!312;UBERON:0000483!3.79e-12!309;UBERON:0000948!1.24e-10!24;UBERON:0005498!1.24e-10!24;UBERON:0004140!1.24e-10!24;UBERON:0009881!1.24e-10!24;UBERON:0004141!1.24e-10!24;UBERON:0003084!1.24e-10!24;UBERON:0007005!1.24e-10!24;UBERON:0004139!1.24e-10!24;UBERON:0004291!1.24e-10!24;UBERON:0007100!1.33e-10!27;UBERON:0000487!3.59e-09!22;UBERON:0000468!9.21e-09!659;UBERON:0001135!1.85e-08!15;UBERON:0004237!1.96e-08!10;UBERON:0004695!1.96e-08!10;UBERON:0002111!1.96e-08!10;UBERON:0004178!1.96e-08!10;UBERON:0002100!4.39e-08!216;UBERON:0006914!9.20e-08!25;UBERON:0003081!1.28e-07!216;UBERON:0003915!2.02e-07!9;UBERON:0004700!2.02e-07!9;UBERON:0001917!2.02e-07!9;UBERON:0000467!2.13e-07!625;UBERON:0000480!2.82e-07!626;UBERON:0003103!3.75e-07!69;UBERON:0000926!9.72e-07!448;UBERON:0004120!9.72e-07!448;UBERON:0006603!9.72e-07!448 | |||
|ontology_enrichment_uberon_v019=UBERON:0001637;1.30e-26;42!UBERON:0003509;1.30e-26;42!UBERON:0004572;1.30e-26;42!UBERON:0004573;7.40e-26;33!UBERON:0004571;7.40e-26;33!UBERON:0007500;2.73e-24;56!UBERON:0001981;2.73e-24;56!UBERON:0004537;2.73e-24;56!UBERON:0000055;8.37e-24;65!UBERON:0004638;2.51e-19;18!UBERON:0001986;2.51e-19;18!UBERON:0004852;2.51e-19;18!UBERON:0000947;3.51e-19;21!UBERON:0010191;3.51e-19;21!UBERON:0003914;2.32e-18;74!UBERON:0002049;7.19e-18;75!UBERON:0007798;7.19e-18;75!UBERON:0000487;1.14e-14;22!UBERON:0004535;1.11e-12;109!UBERON:0006914;3.47e-12;25!UBERON:0000948;5.26e-12;22!UBERON:0000025;7.07e-12;93!UBERON:0001009;3.47e-11;112!UBERON:0003915;1.51e-10;9!UBERON:0004700;1.51e-10;9!UBERON:0001917;1.51e-10;9!UBERON:0004237;2.26e-10;10!UBERON:0004695;2.26e-10;10!UBERON:0002111;2.26e-10;10!UBERON:0004178;2.26e-10;10!UBERON:0007100;6.20e-10;25!UBERON:0002385;1.30e-08;31!UBERON:0001015;1.30e-08;31!UBERON:0000383;1.30e-08;31!UBERON:0000490;4.00e-08;33!UBERON:0003513;5.38e-08;7!UBERON:0002118;2.74e-07;5!UBERON:0000992;4.04e-07;13!UBERON:0010260;5.34e-07;9!UBERON:0001638;7.88e-07;9!UBERON:0003920;7.88e-07;9!UBERON:0004582;7.88e-07;9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000055,6.05e-52,68;UBERON:0004872,5.39e-50,83;UBERON:0007500,4.31e-48,59;UBERON:0001981,4.31e-48,59;UBERON:0004537,4.31e-48,59;UBERON:0006965,4.31e-48,59;UBERON:0002049,1.22e-45,78;UBERON:0007798,1.22e-45,78;UBERON:0003914,9.77e-44,117;UBERON:0004535,4.33e-43,109;UBERON:0001009,3.18e-41,112;UBERON:0001637,1.34e-36,42;UBERON:0003509,1.34e-36,42;UBERON:0004572,1.34e-36,42;UBERON:0004573,3.34e-28,33;UBERON:0004571,3.34e-28,33;UBERON:0007503,9.94e-24,78;UBERON:0000926,4.68e-22,315;UBERON:0004120,4.68e-22,315;UBERON:0006603,4.68e-22,315;UBERON:0000490,5.87e-20,148;UBERON:0002329,1.44e-19,71;UBERON:0003059,1.44e-19,71;UBERON:0007282,1.44e-19,71;UBERON:0004290,1.44e-19,71;UBERON:0009618,1.44e-19,71;UBERON:0001134,1.73e-19,62;UBERON:0002036,1.73e-19,62;UBERON:0003082,1.73e-19,62;UBERON:0004638,2.05e-19,18;UBERON:0001986,2.05e-19,18;UBERON:0004852,2.05e-19,18;UBERON:0000947,3.00e-19,21;UBERON:0010191,3.00e-19,21;UBERON:0003077,4.27e-19,72;UBERON:0007285,4.27e-19,72;UBERON:0007524,1.23e-18,73;UBERON:0003081,1.56e-18,203;UBERON:0002385,1.84e-18,64;UBERON:0001015,1.84e-18,64;UBERON:0000383,1.84e-18,64;UBERON:0000025,7.11e-18,192;UBERON:0004111,6.86e-16,240;UBERON:0000487,9.70e-15,22;UBERON:0000486,1.03e-14,83;UBERON:0005256,2.25e-14,122;UBERON:0000948,6.36e-14,24;UBERON:0005498,6.36e-14,24;UBERON:0004140,6.36e-14,24;UBERON:0009881,6.36e-14,24;UBERON:0004141,6.36e-14,24;UBERON:0003084,6.36e-14,24;UBERON:0007005,6.36e-14,24;UBERON:0004139,6.36e-14,24;UBERON:0004291,6.36e-14,24;UBERON:0003104,5.92e-13,160;UBERON:0009142,5.92e-13,160;UBERON:0006914,3.02e-12,25;UBERON:0007100,1.08e-11,27;UBERON:0000119,3.41e-11,309;UBERON:0000483,9.63e-11,306;UBERON:0003915,1.22e-10,9;UBERON:0004700,1.22e-10,9;UBERON:0001917,1.22e-10,9;UBERON:0004237,1.80e-10,10;UBERON:0004695,1.80e-10,10;UBERON:0002111,1.80e-10,10;UBERON:0004178,1.80e-10,10;UBERON:0003513,4.91e-08,7;UBERON:0002100,7.16e-08,199;UBERON:0003103,8.00e-08,68;UBERON:0002118,2.52e-07,5;UBERON:0000992,4.26e-07,13;UBERON:0010260,7.16e-07,9 | |||
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| |||
|short_description=p6@LIMS1 | |||
}} |
Latest revision as of 06:43, 16 September 2015
Short description: | p6@LIMS1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_6_at_LIMS1_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000542845_5end |
EntrezGene: | LIMS1 |
HGNC: | 6616 |
UniProt: | B7Z7R3 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mesodermal cell | 9.89e-30 | 121 |
endothelial cell of vascular tree | 2.00e-26 | 24 |
endothelial cell | 3.94e-25 | 36 |
meso-epithelial cell | 1.78e-20 | 45 |
vascular associated smooth muscle cell | 7.41e-20 | 32 |
blood vessel endothelial cell | 2.05e-19 | 18 |
embryonic blood vessel endothelial progenitor cell | 2.05e-19 | 18 |
muscle precursor cell | 1.39e-17 | 58 |
myoblast | 1.39e-17 | 58 |
multi-potent skeletal muscle stem cell | 1.39e-17 | 58 |
muscle cell | 2.49e-15 | 55 |
smooth muscle cell | 6.64e-15 | 43 |
smooth muscle myoblast | 6.64e-15 | 43 |
electrically responsive cell | 9.05e-13 | 61 |
electrically active cell | 9.05e-13 | 61 |
lining cell | 1.27e-11 | 58 |
barrier cell | 1.27e-11 | 58 |
cardiocyte | 5.14e-11 | 16 |
endothelial cell of artery | 1.22e-10 | 9 |
aortic smooth muscle cell | 1.80e-10 | 10 |
lymphangioblast | 1.37e-08 | 6 |
endothelial cell of lymphatic vessel | 1.37e-08 | 6 |
vascular lymphangioblast | 1.37e-08 | 6 |
aortic endothelial cell | 7.04e-08 | 6 |
embryonic cell | 2.27e-07 | 250 |
multi fate stem cell | 2.46e-07 | 427 |
somatic stem cell | 7.19e-07 | 433 |
vein endothelial cell | 8.24e-07 | 6 |
Ontology term | p-value | n |
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