FFCP PHASE1:Mm9::chr11:118431276..118431314,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(One intermediate revision by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP|EntrezGene=52897|HGNC=|MCL_coexpression_id=353|UniProt=A2A4W9|association_with_transcript=-52bp_to_ENSMUST00000136551_5end|description=CAGE_peak_3_at_Rbfox3_5end|id=chr11:118431276..118431314,-|ontology_enrichment_celltype=CL:0000117!1.63e-15!23;CL:0000337!1.63e-15!23;CL:0000540!2.41e-10!33;CL:0000047!2.41e-10!33;CL:0000031!2.41e-10!33;CL:0000404!2.41e-10!33;CL:0000221!5.13e-08!44;CL:0000133!5.13e-08!44;CL:0000393!1.29e-07!39;CL:0000211!1.29e-07!39;CL:0002319!1.85e-07!43|ontology_enrichment_celltype_v019_2=CL:0000117,2.82e-13,23;CL:0000337,2.82e-13,23;CL:0000540,3.82e-08,33;CL:0000047,3.82e-08,33;CL:0000031,3.82e-08,33;CL:0000404,3.82e-08,33;CL:0002612,4.77e-07,3|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001049!3.08e-29!52;UBERON:0005068!3.08e-29!52;UBERON:0006241!3.08e-29!52;UBERON:0007135!3.08e-29!52;UBERON:0000073!3.14e-28!75;UBERON:0001016!3.14e-28!75;UBERON:0001017!1.95e-27!73;UBERON:0005743!1.95e-27!73;UBERON:0000955!3.90e-26!50;UBERON:0006238!3.90e-26!50;UBERON:0002616!1.83e-25!49;UBERON:0000033!4.12e-24!63;UBERON:0003080!1.10e-21!40;UBERON:0002346!9.91e-21!71;UBERON:0003075!9.91e-21!71;UBERON:0007284!9.91e-21!71;UBERON:0002780!1.18e-20!39;UBERON:0001890!1.18e-20!39;UBERON:0006240!1.18e-20!39;UBERON:0002020!6.55e-20!34;UBERON:0004121!8.22e-20!102;UBERON:0000924!8.22e-20!102;UBERON:0006601!8.22e-20!102;UBERON:0003056!1.52e-19!49;UBERON:0002791!8.40e-15!29;UBERON:0003528!8.40e-15!29;UBERON:0001893!8.40e-15!29;UBERON:0007811!1.59e-14!86;UBERON:0000153!6.21e-12!94;UBERON:0000956!2.75e-09!21;UBERON:0001869!2.75e-09!21;UBERON:0000203!2.75e-09!21;UBERON:0002021!1.42e-08!10;UBERON:0000411!1.42e-08!10;UBERON:0001950!1.42e-08!10;UBERON:0003076!6.10e-08!12;UBERON:0003057!6.10e-08!12;UBERON:0002240!6.26e-08!6;UBERON:0005174!6.26e-08!6;UBERON:0001137!6.26e-08!6;UBERON:0002619!1.21e-07!17;UBERON:0002298!2.93e-07!6;UBERON:0002420!4.47e-07!8;UBERON:0007245!4.47e-07!8;UBERON:0010009!4.47e-07!8;UBERON:0010011!4.47e-07!8;UBERON:0000454!4.47e-07!8;UBERON:0001948!7.17e-07!5;UBERON:0002315!7.17e-07!5;UBERON:0001894!7.62e-07!10;UBERON:0006222!7.62e-07!10|ontology_enrichment_uberon_v019_2=UBERON:0000073,2.07e-29,54;UBERON:0001049,7.16e-27,52;UBERON:0005068,7.16e-27,52;UBERON:0006241,7.16e-27,52;UBERON:0007135,7.16e-27,52;UBERON:0001017,4.53e-26,73;UBERON:0001016,4.13e-25,75;UBERON:0002346,3.22e-20,64;UBERON:0003075,3.22e-20,64;UBERON:0007284,3.22e-20,64;UBERON:0004121,5.26e-19,95;UBERON:0000924,5.26e-19,95;UBERON:0006601,5.26e-19,95;UBERON:0002616,4.91e-18,46;UBERON:0010371,5.16e-18,73;UBERON:0003080,1.25e-17,40;UBERON:0000955,1.66e-17,47;UBERON:0006238,1.66e-17,47;UBERON:0002020,5.24e-17,34;UBERON:0002780,2.95e-16,39;UBERON:0001890,2.95e-16,39;UBERON:0006240,2.95e-16,39;UBERON:0003056,2.97e-13,49;UBERON:0002240,1.42e-12,6;UBERON:0005174,1.42e-12,6;UBERON:0001137,1.42e-12,6;UBERON:0010314,1.60e-12,92;UBERON:0001948,9.44e-11,5;UBERON:0002315,9.44e-11,5;UBERON:0003528,3.00e-10,29;UBERON:0002791,3.00e-10,29;UBERON:0001893,3.00e-10,29;UBERON:0003076,4.69e-10,12;UBERON:0003057,4.69e-10,12;UBERON:0002021,1.22e-09,10;UBERON:0000411,1.22e-09,10;UBERON:0001950,1.22e-09,10;UBERON:0002950,5.61e-08,4;UBERON:0001891,5.61e-08,4;UBERON:0009616,5.61e-08,4;UBERON:0010286,5.61e-08,4;UBERON:0000025,9.08e-08,114;UBERON:0001894,1.90e-07,10;UBERON:0006222,1.90e-07,10;UBERON:0004111,1.96e-07,122;UBERON:0002257,4.77e-07,3|phase1_expression=0.640595388419176,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.850432901510698,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.22548106945558,2.11596391708813,3.1691570175309,0,0,0,0,0,0,0,0.207379224616955,0.135005938331691,0.210324961351382,20.8525218614777,22.0868540951614,0.244981598429908,0.0958454710182364,0,1.10115880999389,4.59674417106676,5.83704826373725,0.395658863190582,0.640413505216868,0.52091337055676,4.4669279840221,1.68828783009504,4.27835093775068,23.2756582524197,17.0846016958924,10.0655700745662,0.075726193333184,0.302286240427142,0,0,0,0,0,0,0.280888840263504,0,0,0,1.40843419776681,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.292780797011547,0.209446706813455,0,0,0,0,13.1815762676244,9.60751265919116,1.88481528169297,4.17178368461463,2.55715457330331,5.194701113989,2.92034273521964,0,0,0,0.210441855886474,0,0,0,0,0,0.2562274405697,0.281105173679186,0.776110112217047,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.36463917702604,0.411618449517138,0,0,0.213288250535234,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,9.31193421929193,8.67366480782304,0,0,0,0,0,0.238968797952552,0,0,0,0,0,0.963963949265421,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.36012218806262,1.29358683782755,1.71469628025274,0.886701168211368,1.60531935841864,1.64549020602121,1.2178597964584,0,0,0,0,0,0,0,0,0,18.3571048990405,0,0,0,0,0,0,0,0,0,0,0,0.203319467126849,0,0,0,0,0,0,0.129614973291793,0,0.56369293868419,0,0,0.388902376688095,0.258319646955462,0.168956125490778,0,0,0.104859344425711,0,0,0,0,0,0,0,0,0,0,0.100966449948148,0,0,0.0974578807397524,0,0,0,0,0,0,0,0,0,0,0,1.6942555278512,1.38097570952153,4.01026859407578,0.343706364687375,1.37016503954128,0.755393897389701,1.35004500046361,4.05289082901798,3.62513927187364,1.03552062350364,0,0,0,0.486213434136588,2.09613162627982,1.10306105070008,0.888986911206461,1.23621034343337,1.92551525755089,0.252697211763798,0,0.943131706930381,0.655490552289177,1.15245274328765,0.976402972245426,0.952587382566147,1.0429589335037,0.38581844092741,0,0.147198920134397,1.37147700954166,1.06485483695602,0.953744759789284,0.726732083161643,1.2234219453993,1.01537529470012,1.28049581010941,1.05227884575137,0.407412341537585,0,0.711810108745045,1.0835493061312,1.22769312950907,0.77468420592983,0.578719832943424,1.24905288968973,0.701794825336225,0.859484216193193,0.765153328275374,0.882365676478062,0.927471342481686|short_description=p3@Rbfox3}} | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=52897 | |||
|HGNC= | |||
|MCL_coexpression_id=353 | |||
|TSSclassifier=NA | |||
|UniProt=A2A4W9 | |||
|association_with_transcript=-52bp_to_ENSMUST00000136551_5end | |||
|cluster_id=chr11:118431276..118431314,- | |||
|description=CAGE_peak_3_at_Rbfox3_5end | |||
|id=chr11:118431276..118431314,- | |||
|ontology_enrichment_celltype=CL:0000117!1.63e-15!23;CL:0000337!1.63e-15!23;CL:0000540!2.41e-10!33;CL:0000047!2.41e-10!33;CL:0000031!2.41e-10!33;CL:0000404!2.41e-10!33;CL:0000221!5.13e-08!44;CL:0000133!5.13e-08!44;CL:0000393!1.29e-07!39;CL:0000211!1.29e-07!39;CL:0002319!1.85e-07!43 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,2.82e-13,23;CL:0000337,2.82e-13,23;CL:0000540,3.82e-08,33;CL:0000047,3.82e-08,33;CL:0000031,3.82e-08,33;CL:0000404,3.82e-08,33;CL:0002612,4.77e-07,3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!3.08e-29!52;UBERON:0005068!3.08e-29!52;UBERON:0006241!3.08e-29!52;UBERON:0007135!3.08e-29!52;UBERON:0000073!3.14e-28!75;UBERON:0001016!3.14e-28!75;UBERON:0001017!1.95e-27!73;UBERON:0005743!1.95e-27!73;UBERON:0000955!3.90e-26!50;UBERON:0006238!3.90e-26!50;UBERON:0002616!1.83e-25!49;UBERON:0000033!4.12e-24!63;UBERON:0003080!1.10e-21!40;UBERON:0002346!9.91e-21!71;UBERON:0003075!9.91e-21!71;UBERON:0007284!9.91e-21!71;UBERON:0002780!1.18e-20!39;UBERON:0001890!1.18e-20!39;UBERON:0006240!1.18e-20!39;UBERON:0002020!6.55e-20!34;UBERON:0004121!8.22e-20!102;UBERON:0000924!8.22e-20!102;UBERON:0006601!8.22e-20!102;UBERON:0003056!1.52e-19!49;UBERON:0002791!8.40e-15!29;UBERON:0003528!8.40e-15!29;UBERON:0001893!8.40e-15!29;UBERON:0007811!1.59e-14!86;UBERON:0000153!6.21e-12!94;UBERON:0000956!2.75e-09!21;UBERON:0001869!2.75e-09!21;UBERON:0000203!2.75e-09!21;UBERON:0002021!1.42e-08!10;UBERON:0000411!1.42e-08!10;UBERON:0001950!1.42e-08!10;UBERON:0003076!6.10e-08!12;UBERON:0003057!6.10e-08!12;UBERON:0002240!6.26e-08!6;UBERON:0005174!6.26e-08!6;UBERON:0001137!6.26e-08!6;UBERON:0002619!1.21e-07!17;UBERON:0002298!2.93e-07!6;UBERON:0002420!4.47e-07!8;UBERON:0007245!4.47e-07!8;UBERON:0010009!4.47e-07!8;UBERON:0010011!4.47e-07!8;UBERON:0000454!4.47e-07!8;UBERON:0001948!7.17e-07!5;UBERON:0002315!7.17e-07!5;UBERON:0001894!7.62e-07!10;UBERON:0006222!7.62e-07!10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000073,2.07e-29,54;UBERON:0001049,7.16e-27,52;UBERON:0005068,7.16e-27,52;UBERON:0006241,7.16e-27,52;UBERON:0007135,7.16e-27,52;UBERON:0001017,4.53e-26,73;UBERON:0001016,4.13e-25,75;UBERON:0002346,3.22e-20,64;UBERON:0003075,3.22e-20,64;UBERON:0007284,3.22e-20,64;UBERON:0004121,5.26e-19,95;UBERON:0000924,5.26e-19,95;UBERON:0006601,5.26e-19,95;UBERON:0002616,4.91e-18,46;UBERON:0010371,5.16e-18,73;UBERON:0003080,1.25e-17,40;UBERON:0000955,1.66e-17,47;UBERON:0006238,1.66e-17,47;UBERON:0002020,5.24e-17,34;UBERON:0002780,2.95e-16,39;UBERON:0001890,2.95e-16,39;UBERON:0006240,2.95e-16,39;UBERON:0003056,2.97e-13,49;UBERON:0002240,1.42e-12,6;UBERON:0005174,1.42e-12,6;UBERON:0001137,1.42e-12,6;UBERON:0010314,1.60e-12,92;UBERON:0001948,9.44e-11,5;UBERON:0002315,9.44e-11,5;UBERON:0003528,3.00e-10,29;UBERON:0002791,3.00e-10,29;UBERON:0001893,3.00e-10,29;UBERON:0003076,4.69e-10,12;UBERON:0003057,4.69e-10,12;UBERON:0002021,1.22e-09,10;UBERON:0000411,1.22e-09,10;UBERON:0001950,1.22e-09,10;UBERON:0002950,5.61e-08,4;UBERON:0001891,5.61e-08,4;UBERON:0009616,5.61e-08,4;UBERON:0010286,5.61e-08,4;UBERON:0000025,9.08e-08,114;UBERON:0001894,1.90e-07,10;UBERON:0006222,1.90e-07,10;UBERON:0004111,1.96e-07,122;UBERON:0002257,4.77e-07,3 | |||
|phase1_expression=0.640595388419176,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.850432901510698,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.22548106945558,2.11596391708813,3.1691570175309,0,0,0,0,0,0,0,0.207379224616955,0.135005938331691,0.210324961351382,20.8525218614777,22.0868540951614,0.244981598429908,0.0958454710182364,0,1.10115880999389,4.59674417106676,5.83704826373725,0.395658863190582,0.640413505216868,0.52091337055676,4.4669279840221,1.68828783009504,4.27835093775068,23.2756582524197,17.0846016958924,10.0655700745662,0.075726193333184,0.302286240427142,0,0,0,0,0,0,0.280888840263504,0,0,0,1.40843419776681,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.292780797011547,0.209446706813455,0,0,0,0,13.1815762676244,9.60751265919116,1.88481528169297,4.17178368461463,2.55715457330331,5.194701113989,2.92034273521964,0,0,0,0.210441855886474,0,0,0,0,0,0.2562274405697,0.281105173679186,0.776110112217047,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.36463917702604,0.411618449517138,0,0,0.213288250535234,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,9.31193421929193,8.67366480782304,0,0,0,0,0,0.238968797952552,0,0,0,0,0,0.963963949265421,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.36012218806262,1.29358683782755,1.71469628025274,0.886701168211368,1.60531935841864,1.64549020602121,1.2178597964584,0,0,0,0,0,0,0,0,0,18.3571048990405,0,0,0,0,0,0,0,0,0,0,0,0.203319467126849,0,0,0,0,0,0,0.129614973291793,0,0.56369293868419,0,0,0.388902376688095,0.258319646955462,0.168956125490778,0,0,0.104859344425711,0,0,0,0,0,0,0,0,0,0,0.100966449948148,0,0,0.0974578807397524,0,0,0,0,0,0,0,0,0,0,0,1.6942555278512,1.38097570952153,4.01026859407578,0.343706364687375,1.37016503954128,0.755393897389701,1.35004500046361,4.05289082901798,3.62513927187364,1.03552062350364,0,0,0,0.486213434136588,2.09613162627982,1.10306105070008,0.888986911206461,1.23621034343337,1.92551525755089,0.252697211763798,0,0.943131706930381,0.655490552289177,1.15245274328765,0.976402972245426,0.952587382566147,1.0429589335037,0.38581844092741,0,0.147198920134397,1.37147700954166,1.06485483695602,0.953744759789284,0.726732083161643,1.2234219453993,1.01537529470012,1.28049581010941,1.05227884575137,0.407412341537585,0,0.711810108745045,1.0835493061312,1.22769312950907,0.77468420592983,0.578719832943424,1.24905288968973,0.701794825336225,0.859484216193193,0.765153328275374,0.882365676478062,0.927471342481686 | |||
|short_description=p3@Rbfox3 | |||
}} |
Latest revision as of 01:58, 27 September 2015
Short description: | p3@Rbfox3 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Rbfox3_5end |
Coexpression cluster: | MCL_coexpression_mm9:353 |
Association with transcript: | -52bp_to_ENSMUST00000136551_5end |
EntrezGene: | Rbfox3 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 2.82e-13 | 23 |
neuroblast (sensu Vertebrata) | 2.82e-13 | 23 |
neuron | 3.82e-08 | 33 |
neuronal stem cell | 3.82e-08 | 33 |
neuroblast | 3.82e-08 | 33 |
electrically signaling cell | 3.82e-08 | 33 |
neuron of the ventral spinal cord | 4.77e-07 | 3 |