FFCP PHASE1:Mm9::chr5:121459450..121459489,-: Difference between revisions
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{{FFCP|EntrezGene=19894|HGNC=|MCL_coexpression_id=1|UniProt=P47708|association_with_transcript=37bp_to_ENSMUST00000079204,NM_011286,uc008zil.1_5end|description=CAGE_peak_2_at_Rph3a_5end|id=chr5:121459450..121459489,-|ontology_enrichment_celltype=CL:0000117!8.16e-17!23;CL:0000337!8.16e-17!23;CL:0000540!4.26e-10!33;CL:0000047!4.26e-10!33;CL:0000031!4.26e-10!33;CL:0000404!4.26e-10!33;CL:0000393!2.79e-07!39;CL:0000211!2.79e-07!39;CL:0000221!9.65e-07!44;CL:0000133!9.65e-07!44|ontology_enrichment_celltype_v019_2=CL:0000117,4.80e-21,23;CL:0000337,4.80e-21,23;CL:0000540,1.20e-13,33;CL:0000047,1.20e-13,33;CL:0000031,1.20e-13,33;CL:0000404,1.20e-13,33;CL:0000393,2.05e-10,39;CL:0000211,2.05e-10,39;CL:0000221,2.70e-09,44;CL:0000133,2.70e-09,44;CL:0002319,8.55e-09,43|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002346!4.58e-37!71;UBERON:0003075!4.58e-37!71;UBERON:0007284!4.58e-37!71;UBERON:0000033!1.37e-36!63;UBERON:0001049!1.43e-32!52;UBERON:0005068!1.43e-32!52;UBERON:0006241!1.43e-32!52;UBERON:0007135!1.43e-32!52;UBERON:0003056!2.01e-31!49;UBERON:0000955!3.65e-31!50;UBERON:0006238!3.65e-31!50;UBERON:0002616!1.94e-30!49;UBERON:0004121!7.46e-30!102;UBERON:0000924!7.46e-30!102;UBERON:0006601!7.46e-30!102;UBERON:0001017!4.52e-28!73;UBERON:0005743!4.52e-28!73;UBERON:0000073!1.42e-27!75;UBERON:0001016!1.42e-27!75;UBERON:0003080!1.34e-25!40;UBERON:0002780!1.11e-24!39;UBERON:0001890!1.11e-24!39;UBERON:0006240!1.11e-24!39;UBERON:0002020!3.67e-23!34;UBERON:0007811!9.91e-21!86;UBERON:0002791!2.14e-19!29;UBERON:0003528!2.14e-19!29;UBERON:0001893!2.14e-19!29;UBERON:0000153!3.79e-17!94;UBERON:0000956!2.03e-13!21;UBERON:0001869!2.03e-13!21;UBERON:0000203!2.03e-13!21;UBERON:0002619!4.98e-11!17;UBERON:0002021!3.27e-10!10;UBERON:0000411!3.27e-10!10;UBERON:0001950!3.27e-10!10;UBERON:0003076!2.61e-07!12;UBERON:0003057!2.61e-07!12;UBERON:0002420!3.29e-07!8;UBERON:0007245!3.29e-07!8;UBERON:0010009!3.29e-07!8;UBERON:0010011!3.29e-07!8;UBERON:0000454!3.29e-07!8|ontology_enrichment_uberon_v019_2=UBERON:0002346,4.22e-43,64;UBERON:0003075,4.22e-43,64;UBERON:0007284,4.22e-43,64;UBERON:0000073,7.00e-42,54;UBERON:0001049,2.25e-39,52;UBERON:0005068,2.25e-39,52;UBERON:0006241,2.25e-39,52;UBERON:0007135,2.25e-39,52;UBERON:0010371,1.17e-38,73;UBERON:0003056,2.36e-36,49;UBERON:0001017,4.74e-36,73;UBERON:0004121,8.61e-36,95;UBERON:0000924,8.61e-36,95;UBERON:0006601,8.61e-36,95;UBERON:0001016,1.30e-34,75;UBERON:0000955,8.54e-34,47;UBERON:0006238,8.54e-34,47;UBERON:0002616,6.80e-33,46;UBERON:0003080,4.29e-30,40;UBERON:0002020,1.43e-29,34;UBERON:0010314,5.04e-29,92;UBERON:0002780,6.13e-29,39;UBERON:0001890,6.13e-29,39;UBERON:0006240,6.13e-29,39;UBERON:0003528,9.65e-25,29;UBERON:0002791,9.65e-25,29;UBERON:0001893,9.65e-25,29;UBERON:0000956,4.43e-17,21;UBERON:0001869,4.43e-17,21;UBERON:0000203,4.43e-17,21;UBERON:0002619,5.05e-14,17;UBERON:0002021,1.32e-12,10;UBERON:0000411,1.32e-12,10;UBERON:0001950,1.32e-12,10;UBERON:0000025,6.75e-10,114;UBERON:0004111,1.38e-09,122;UBERON:0003076,2.97e-09,12;UBERON:0003057,2.97e-09,12;UBERON:0002420,8.84e-09,8;UBERON:0007245,8.84e-09,8;UBERON:0010009,8.84e-09,8;UBERON:0010011,8.84e-09,8;UBERON:0000454,8.84e-09,8;UBERON:0002240,3.60e-07,6;UBERON:0005174,3.60e-07,6;UBERON:0001137,3.60e-07,6;UBERON:0000020,4.21e-07,12;UBERON:0001032,4.21e-07,12;UBERON:0004456,4.21e-07,12;UBERON:0000970,9.60e-07,9;UBERON:0000019,9.60e-07,9;UBERON:0000047,9.60e-07,9;UBERON:0010312,9.60e-07,9;UBERON:0004088,9.60e-07,9;UBERON:0002104,9.60e-07,9;UBERON:0001456,9.60e-07,9;UBERON:0003072,9.60e-07,9;UBERON:0004128,9.60e-07,9;UBERON:0003071,9.60e-07,9|phase1_expression=2.88267924788629,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,12.7564935226605,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.23706337375356,6.87688273053643,2.53532561402472,0,0,0,0,0,0,0,2.48855069540346,2.97013064329719,2.3135745748652,17.1390590642282,17.4486147351775,5.26710436624302,4.79227355091182,5.51531271966013,62.7660521696516,49.4149998389676,61.7498263690099,5.01167893374737,6.31264740856627,6.25096044668112,50.8113058182513,39.3933827022176,32.0876320331301,17.9723437138937,15.233769845504,5.03278503728312,0.151452386666368,0,0,0,0,0.539703191637817,0,0,3.23022166303029,0,0,0,1.97180787687353,0,0,0,0,0,0,1.59857431606684,0,1.03909497345377,0,0.304465478312141,0.922461989024234,0.904335843315735,0.587943535678524,1.0053327306374,0,0,0,0,0,0,0,39.8181883935704,49.4294228079754,0,0,0,0,49.2811203641867,48.0375632959558,12.5654352112864,57.3620256634512,59.0702706433064,41.1420328227929,39.5868681885329,0,0,0,6.52369753248069,0.130120442962704,1.83921683546778,3.42118046630164,6.32960234910003,9.32100038373192,7.94305065766069,7.30873451565885,15.78090561508,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,42.6888595585178,6.07137213037778,0,0,0,0,0,0.201683524623343,0,0.570676878337677,0,0,0,0.397912944082302,0.19496408711912,0.898819408654221,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=19894 | |||
|HGNC= | |||
|MCL_coexpression_id=1 | |||
|TSSclassifier=NA | |||
|UniProt=P47708 | |||
|association_with_transcript=37bp_to_ENSMUST00000079204,NM_011286,uc008zil.1_5end | |||
|cluster_id=chr5:121459450..121459489,- | |||
|description=CAGE_peak_2_at_Rph3a_5end | |||
|id=chr5:121459450..121459489,- | |||
|ontology_enrichment_celltype=CL:0000117!8.16e-17!23;CL:0000337!8.16e-17!23;CL:0000540!4.26e-10!33;CL:0000047!4.26e-10!33;CL:0000031!4.26e-10!33;CL:0000404!4.26e-10!33;CL:0000393!2.79e-07!39;CL:0000211!2.79e-07!39;CL:0000221!9.65e-07!44;CL:0000133!9.65e-07!44 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,4.80e-21,23;CL:0000337,4.80e-21,23;CL:0000540,1.20e-13,33;CL:0000047,1.20e-13,33;CL:0000031,1.20e-13,33;CL:0000404,1.20e-13,33;CL:0000393,2.05e-10,39;CL:0000211,2.05e-10,39;CL:0000221,2.70e-09,44;CL:0000133,2.70e-09,44;CL:0002319,8.55e-09,43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002346!4.58e-37!71;UBERON:0003075!4.58e-37!71;UBERON:0007284!4.58e-37!71;UBERON:0000033!1.37e-36!63;UBERON:0001049!1.43e-32!52;UBERON:0005068!1.43e-32!52;UBERON:0006241!1.43e-32!52;UBERON:0007135!1.43e-32!52;UBERON:0003056!2.01e-31!49;UBERON:0000955!3.65e-31!50;UBERON:0006238!3.65e-31!50;UBERON:0002616!1.94e-30!49;UBERON:0004121!7.46e-30!102;UBERON:0000924!7.46e-30!102;UBERON:0006601!7.46e-30!102;UBERON:0001017!4.52e-28!73;UBERON:0005743!4.52e-28!73;UBERON:0000073!1.42e-27!75;UBERON:0001016!1.42e-27!75;UBERON:0003080!1.34e-25!40;UBERON:0002780!1.11e-24!39;UBERON:0001890!1.11e-24!39;UBERON:0006240!1.11e-24!39;UBERON:0002020!3.67e-23!34;UBERON:0007811!9.91e-21!86;UBERON:0002791!2.14e-19!29;UBERON:0003528!2.14e-19!29;UBERON:0001893!2.14e-19!29;UBERON:0000153!3.79e-17!94;UBERON:0000956!2.03e-13!21;UBERON:0001869!2.03e-13!21;UBERON:0000203!2.03e-13!21;UBERON:0002619!4.98e-11!17;UBERON:0002021!3.27e-10!10;UBERON:0000411!3.27e-10!10;UBERON:0001950!3.27e-10!10;UBERON:0003076!2.61e-07!12;UBERON:0003057!2.61e-07!12;UBERON:0002420!3.29e-07!8;UBERON:0007245!3.29e-07!8;UBERON:0010009!3.29e-07!8;UBERON:0010011!3.29e-07!8;UBERON:0000454!3.29e-07!8 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002346,4.22e-43,64;UBERON:0003075,4.22e-43,64;UBERON:0007284,4.22e-43,64;UBERON:0000073,7.00e-42,54;UBERON:0001049,2.25e-39,52;UBERON:0005068,2.25e-39,52;UBERON:0006241,2.25e-39,52;UBERON:0007135,2.25e-39,52;UBERON:0010371,1.17e-38,73;UBERON:0003056,2.36e-36,49;UBERON:0001017,4.74e-36,73;UBERON:0004121,8.61e-36,95;UBERON:0000924,8.61e-36,95;UBERON:0006601,8.61e-36,95;UBERON:0001016,1.30e-34,75;UBERON:0000955,8.54e-34,47;UBERON:0006238,8.54e-34,47;UBERON:0002616,6.80e-33,46;UBERON:0003080,4.29e-30,40;UBERON:0002020,1.43e-29,34;UBERON:0010314,5.04e-29,92;UBERON:0002780,6.13e-29,39;UBERON:0001890,6.13e-29,39;UBERON:0006240,6.13e-29,39;UBERON:0003528,9.65e-25,29;UBERON:0002791,9.65e-25,29;UBERON:0001893,9.65e-25,29;UBERON:0000956,4.43e-17,21;UBERON:0001869,4.43e-17,21;UBERON:0000203,4.43e-17,21;UBERON:0002619,5.05e-14,17;UBERON:0002021,1.32e-12,10;UBERON:0000411,1.32e-12,10;UBERON:0001950,1.32e-12,10;UBERON:0000025,6.75e-10,114;UBERON:0004111,1.38e-09,122;UBERON:0003076,2.97e-09,12;UBERON:0003057,2.97e-09,12;UBERON:0002420,8.84e-09,8;UBERON:0007245,8.84e-09,8;UBERON:0010009,8.84e-09,8;UBERON:0010011,8.84e-09,8;UBERON:0000454,8.84e-09,8;UBERON:0002240,3.60e-07,6;UBERON:0005174,3.60e-07,6;UBERON:0001137,3.60e-07,6;UBERON:0000020,4.21e-07,12;UBERON:0001032,4.21e-07,12;UBERON:0004456,4.21e-07,12;UBERON:0000970,9.60e-07,9;UBERON:0000019,9.60e-07,9;UBERON:0000047,9.60e-07,9;UBERON:0010312,9.60e-07,9;UBERON:0004088,9.60e-07,9;UBERON:0002104,9.60e-07,9;UBERON:0001456,9.60e-07,9;UBERON:0003072,9.60e-07,9;UBERON:0004128,9.60e-07,9;UBERON:0003071,9.60e-07,9 | |||
|phase1_expression=2.88267924788629,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,12.7564935226605,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.23706337375356,6.87688273053643,2.53532561402472,0,0,0,0,0,0,0,2.48855069540346,2.97013064329719,2.3135745748652,17.1390590642282,17.4486147351775,5.26710436624302,4.79227355091182,5.51531271966013,62.7660521696516,49.4149998389676,61.7498263690099,5.01167893374737,6.31264740856627,6.25096044668112,50.8113058182513,39.3933827022176,32.0876320331301,17.9723437138937,15.233769845504,5.03278503728312,0.151452386666368,0,0,0,0,0.539703191637817,0,0,3.23022166303029,0,0,0,1.97180787687353,0,0,0,0,0,0,1.59857431606684,0,1.03909497345377,0,0.304465478312141,0.922461989024234,0.904335843315735,0.587943535678524,1.0053327306374,0,0,0,0,0,0,0,39.8181883935704,49.4294228079754,0,0,0,0,49.2811203641867,48.0375632959558,12.5654352112864,57.3620256634512,59.0702706433064,41.1420328227929,39.5868681885329,0,0,0,6.52369753248069,0.130120442962704,1.83921683546778,3.42118046630164,6.32960234910003,9.32100038373192,7.94305065766069,7.30873451565885,15.78090561508,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,42.6888595585178,6.07137213037778,0,0,0,0,0,0.201683524623343,0,0.570676878337677,0,0,0,0.397912944082302,0.19496408711912,0.898819408654221,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,70.3211584146529,68.0999899100701,0,0,0,0,0,0,0,0,0,0,0,6.10510501201433,0,0,0,0,0,0,0,0,0,0,0.258428293168221,0,0,0.316036757935816,0,0,1.36175842301515,0.36012218806262,0.517434735131018,1.71469628025274,1.77340233642274,4.10248280484762,4.27827453565514,7.00269382963578,0,0,0,0,0,0,0,0,0.874442509889552,88.0770184549921,0,0,0,0,0,0,0,0,0,0,0,0.203319467126849,0,0.209088296014469,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,36.7088697701093,40.9689460491387,41.821372481076,23.0283264340541,50.6961064630275,65.7192690729039,55.3518450190081,68.4488228900815,60.7210828038834,77.664046762773,0,0.399024873401031,1.02440163452481,0.972426868273176,0.209613162627982,1.10306105070008,0.222246727801615,1.23621034343337,0.962757628775446,0.758091635291392,0.760437899670719,2.45214243801899,0.842773567228942,1.02440243847791,1.37845125493472,0.952587382566147,1.15884325944855,1.73618298417335,1.23625770240992,0.735994600671987,1.37147700954166,0.354951612318675,2.38436189947321,1.0174249164263,1.50575008664529,0.930760686808441,0.73171189149109,1.31534855718921,1.49384525230448,0,0.949080144993393,0.886540341380071,0.818462086339379,1.23949472948773,0.771626443924566,4.24677982494508,0.467863216890817,1.07435527024149,1.14772999241306,1.76473135295612,0.927471342481686 | |||
|short_description=p2@Rph3a | |||
}} |
Latest revision as of 19:18, 1 October 2015
Short description: | p2@Rph3a |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Rph3a_5end |
Coexpression cluster: | MCL_coexpression_mm9:1 |
Association with transcript: | 37bp_to_ENSMUST00000079204, NM_011286, uc008zil.1_5end |
EntrezGene: | Rph3a |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 4.80e-21 | 23 |
neuroblast (sensu Vertebrata) | 4.80e-21 | 23 |
neuron | 1.20e-13 | 33 |
neuronal stem cell | 1.20e-13 | 33 |
neuroblast | 1.20e-13 | 33 |
electrically signaling cell | 1.20e-13 | 33 |
electrically responsive cell | 2.05e-10 | 39 |
electrically active cell | 2.05e-10 | 39 |
ectodermal cell | 2.70e-09 | 44 |
neurectodermal cell | 2.70e-09 | 44 |
neural cell | 8.55e-09 | 43 |