FF:10056-101H2: Difference between revisions
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{{f5samples | {{f5samples | ||
|DRA_sample_Accession=CAGE@ | |DRA_sample_Accession=CAGE@SAMD00005114 | ||
|accession_numbers=CAGE;DRX008729;DRR009601;DRZ001026;DRZ002411;DRZ012376;DRZ013761 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0002240,UBERON:0000479,UBERON:0004121,UBERON:0010314,UBERON:0011216,UBERON:0000062,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003103,UBERON:0000489,UBERON:0005174,UBERON:0010317,UBERON:0001017,UBERON:0001016,UBERON:0001137 | |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0002240,UBERON:0000479,UBERON:0004121,UBERON:0010314,UBERON:0011216,UBERON:0000062,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003103,UBERON:0000489,UBERON:0005174,UBERON:0010317,UBERON:0001017,UBERON:0001016,UBERON:0001137 | ||
|ancestors_in_cell_lineage_facet= | |ancestors_in_cell_lineage_facet= | ||
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|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|datafreeze_phase= | |data_phase=2 | ||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr7:100065686..100065701,-!p2@TSC22D4!2.83!679.21!TSC22D4;;chr21:34442439..34442455,+!p1@OLIG1!2.48!303.89!OLIG1;;chr22:38380543..38380569,-!p1@SOX10!2.32!208.37!SOX10;;chr21:34398234..34398250,+!p1@OLIG2!2.13!133.98!OLIG2;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!2.08!118.34!PEG3;;chr3:181429704..181429722,+!p1@SOX2!2.00!98.06!SOX2;;chr10:48355030..48355090,+!p1@ZNF488!1.95!112.00!ZNF488;;chr12:106976774..106976788,+!p1@RFX4!1.93!84.95!RFX4;;chr3:147127177..147127194,+!p2@ZIC1!1.89!76.50!ZIC1;;chr11:61520075..61520136,+!p1@C11orf9!1.87!150.47!C11orf9;;chr3:181429741..181429767,+!p2@SOX2!1.83!66.36!SOX2;;chr3:147127142..147127168,+!p1@ZIC1!1.82!65.09!ZIC1;;chr4:57547454..57547469,-!p1@HOPX!1.78!59.17!HOPX;;chr16:1031762..1031781,+!p1@SOX8!1.75!54.95!SOX8;;chr2:145277882..145277967,-!p3@ZEB2!1.71!84.11!ZEB2;;chr10:134599649..134599653,-!p1@NKX6-2!1.67!46.07!NKX6-2;;chr2:5832508..5832524,+!p1@SOX11!1.66!44.80!SOX11;;chr2:105470562..105470582,+!p@chr2:105470562..105470582,+!1.66!44.38!POU3F3;;chr21:34442540..34442560,+!p2@OLIG1!1.61!40.15!OLIG1;;chr1:2461692..2461710,-!p1@HES5!1.57!35.93!HES5;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.57!35.93!HOXC5;;chr14:33403881..33403924,+!p1@NPAS3!1.57!35.93!NPAS3;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.55!34.66!ZBED1;;chr17:46692457..46692484,-!p2@HOXB8!1.55!34.24!HOXB8;;chr6:19837592..19837621,+!p1@ID4!1.54!199.07!ID4;;chr20:50179368..50179392,-!p2@NFATC2!1.54!43.11!NFATC2;;chr12:103351444..103351461,+!p1@ASCL1!1.54!33.39!ASCL1;;chr17:46682321..46682362,-!p1@HOXB6!1.51!31.28!HOXB6;;chr2:19558373..19558392,-!p1@OSR1!1.49!79.88!OSR1;;chr1:40105299..40105326,-!p1@HEYL!1.49!29.59!HEYL;;chr9:77112244..77112262,+!p1@RORB!1.47!31.70!RORB;;chr11:8102846..8102892,+!p1@TUB!1.45!37.19!TUB;;chr6:126070769..126070801,+!p1@HEY2!1.45!30.85!HEY2;;chr19:46801639..46801699,+!p1@HIF3A!1.45!27.05!HIF3A;;chr2:223163706..223163730,-!p1@PAX3!1.45!27.05!PAX3;;chr17:53342311..53342400,+!p1@HLF!1.43!29.59!HLF;;chr8:80679993..80680011,-!p1@HEY1!1.42!35.93!HEY1;;chr15:80696703..80696754,+!p1@ARNT2!1.42!33.81!ARNT2;;chr4:81118647..81118666,+!p1@PRDM8!1.42!33.39!PRDM8;;chr20:62680984..62680999,-!p1@SOX18!1.41!32.12!SOX18;;chr7:27192185..27192209,-!p1@HOXA3!1.41!24.94!HOXA3;;chr13:100634031..100634045,+!p1@ZIC2!1.41!24.51!ZIC2;;chr5:158526917..158526932,-!p1@EBF1!1.40!58.33!EBF1;;chr12:106976678..106976708,+!p2@RFX4!1.39!23.67!RFX4;;chr4:57547820..57547829,-!p8@HOPX!1.39!23.67!HOPX;;chr2:239148671..239148686,-!p1@HES6!1.37!79.46!HES6;;chr17:46692624..46692659,-!p3@HOXB8!1.37!22.40!HOXB8;;chr7:27196217..27196246,-!p2@HOXA7!1.37!22.40!HOXA7;;chr7:27205136..27205164,-!p1@HOXA9!1.36!21.98!HOXA9;;chr5:92919100..92919135,+!p3@NR2F1!1.35!25.78!NR2F1;;chr19:46800289..46800327,+!p2@HIF3A!1.35!21.56!HIF3A;;chr16:86600426..86600441,+!p1@FOXC2!1.31!47.76!FOXC2;;chr12:26277817..26277863,-!p2@BHLHE41!1.31!26.20!BHLHE41;;chr16:79634624..79634642,-!p1@MAF!1.29!71.85!MAF;;chr12:52445218..52445237,+!p1@NR4A1!1.28!223.16!NR4A1;;chr8:53322304..53322340,-!p1@ST18!1.28!18.17!ST18;;chr17:46690839..46690884,-!p1@HOXB8!1.27!17.75!HOXB8;;chr2:145275982..145276003,-!p7@ZEB2!1.25!16.91!ZEB2;;chr8:55370487..55370503,+!p1@SOX17!1.25!16.91!SOX17;;chr15:57511609..57511651,+!p2@TCF12!1.24!27.47!TCF12;;chr1:214161272..214161322,+!p1@PROX1!1.23!22.40!PROX1;;chr5:92918919..92918942,+!p1@NR2F1!1.22!69.32!NR2F1;;chr13:72441315..72441454,-!p1@DACH1!1.22!30.85!DACH1;;chr5:2751762..2751784,-!p1@IRX2!1.22!15.64!IRX2;;chr8:25902876..25902936,-!p1@EBF2!1.20!14.79!EBF2;;chr17:46688334..46688385,-!p1@HOXB7!1.19!21.13!HOXB7;;chr10:131762504..131762555,-!p1@EBF3!1.19!14.37!EBF3;;chr10:48359344..48359376,+!p2@ZNF488!1.19!14.37!ZNF488;;chr21:39870339..39870443,-!p1@ERG!1.19!14.37!ERG;;chr14:61116183..61116208,-!p1@SIX1!1.18!53.68!SIX1;;chr1:61548069..61548102,+!p3@NFIA!1.18!34.24!NFIA;;chr16:51185172..51185197,-!p1@SALL1!1.17!13.95!SALL1;;chr17:46692287..46692317,-!p7@HOXB8!1.17!13.95!HOXB8;;chr18:76739816..76739822,+!p1@SALL3!1.17!13.95!SALL3;;chr8:30890810..30890880,-!p1@PURG!1.17!13.95!PURG;;chr10:64576105..64576133,-!p1@EGR2!1.16!27.90!EGR2;;chr11:31839488..31839515,-!p3@PAX6!1.16!13.52!PAX6;;chr14:22005197..22005261,-!p3@SALL2!1.16!13.52!SALL2;;chr17:46675619..46675642,-!p5@HOXB6!1.16!13.52!HOXB6;;chr16:79634595..79634620,-!p2@MAF!1.15!24.09!MAF;;chr8:80680024..80680046,-!p2@HEY1!1.15!14.79!HEY1;;chr5:158527104..158527135,-!p4@EBF1!1.15!13.10!EBF1;;chr17:74137321..74137337,-!p1@FOXJ1!1.15!13.10!FOXJ1;;chr2:176994408..176994492,+!p1@HOXD8!1.15!13.10!HOXD8;;chr19:13134772..13134822,+!p2@NFIX!1.14!19.02!NFIX;;chr17:46692603..46692621,-!p6@HOXB8!1.14!12.68!HOXB8;;chr19:58545454..58545498,+!p1@ZSCAN1!1.14!12.68!ZSCAN1;;chr20:21494684..21494708,-!p1@NKX2-2!1.14!12.68!NKX2-2;;chr4:57547751..57547764,-!p6@HOPX!1.14!12.68!HOPX;;chr12:54779511..54779577,-!p5@ZNF385A!1.14!12.68!ZNF385A;;chr17:7492684..7492778,-!p2@SOX15!1.12!25.78!SOX15;;chr6:85474299..85474324,-!p1@TBX18!1.12!21.98!TBX18;;chr12:54393880.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OR1;;chr15:80843484..80843499,+!p5@ARNT2!0.43!1.69!ARNT2;;chr16:31076332..31076388,-!p3@ZNF668!0.43!1.69!ZNF668;;chr16:49698178..49698209,-!p1@ZNF423!0.43!1.69!ZNF423;;chr16:79633883..79633892,-!p6@MAF!0.43!1.69!MAF;;chr16:86600458..86600461,+!p3@FOXC2!0.43!1.69!FOXC2;;chr16:86601052..86601066,+!p4@FOXC2!0.43!1.69!FOXC2;;chr17:46132044..46132080,+!p4@NFE2L1!0.43!1.69!NFE2L1;;chr17:46675469..46675481,-!p4@HOXB6!0.43!1.69!HOXB6;;chr17:46682368..46682373,-!p12@HOXB6!0.43!1.69!HOXB6;;chr17:53342451..53342471,+!p4@HLF!0.43!1.69!HLF;;chr18:22932004..22932021,-!p2@ZNF521!0.43!1.69!ZNF521;;chr18:42260920..42260951,+!p4@SETBP1!0.43!1.69!SETBP1;;chr18:45663438..45663456,-!p3@ZBTB7C!0.43!1.69!ZBTB7C;;chr18:53068940..53068951,-!p21@TCF4!0.43!1.69!TCF4;;chr18:53177899..53177918,-!p33@TCF4!0.43!1.69!TCF4;;chr19:13135832..13135853,+!p16@NFIX!0.43!1.69!NFIX;;chr19:13213954..13214021,-!p4@LYL1!0.43!1.69!LYL1;;chr19:3366429..3366439,+!p16@NFIC!0.43!1.69!NFIC;;chr10:28032421..28032494,-!p2@MKX!0.43!1.69!MKX;;chr11:47399996..47400014,-!p4@SPI1!0.43!1.69!SPI1;;chr11:8040818..8040840,+!p5@TUB!0.43!1.69!TUB;;chr11:85393886..85393913,-!p3@CREBZF!0.43!1.69!CREBZF;;chr12:103352326..103352351,+!p3@ASCL1!0.43!1.69!ASCL1;;chr12:51611583..51611612,-!p4@POU6F1!0.43!1.69!POU6F1;;chr12:52448151..52448200,+!p8@NR4A1!0.43!1.69!NR4A1;;chr12:52448293..52448318,+!p10@NR4A1!0.43!1.69!NR4A1;;chr12:54348655..54348693,+!p1@HOXC12!0.43!1.69!HOXC12;;chr12:54379136..54379150,+!p4@HOXC5!0.43!1.69!HOXC5;;chr12:54694653..54694672,-!p2@NFE2!0.43!1.69!NFE2;;chr12:56414851..56414871,+!p6@IKZF4!0.43!1.69!IKZF4;;chr13:100623360..100623373,-!p2@ZIC5!0.43!1.69!ZIC5;;chr13:37494391..37494406,-!p5@SMAD9!0.43!1.69!SMAD9;;chr14:24020596..24020624,-!p3@ZFHX2!0.43!1.69!ZFHX2;;chrX:147582402..147582414,+!p5@AFF2!0.43!1.69!AFF2;;chr9:124991204..124991246,-!p1@LHX6!0.43!1.69!LHX6;;chr9:3525848..3525863,-!p6@RFX3!0.43!1.69!RFX3;;chrX:107018836..107018862,-!p8@TSC22D3!0.43!1.69!TSC22D3;;chrX:136648297..136648319,+!p3@ZIC3!0.43!1.69!ZIC3;;chr9:14083091..14083096,-!p12@NFIB!0.43!1.69!NFIB;;chrX:84498924..84498935,+!p5@ZNF711!0.43!1.69!ZNF711;;chrX:102000893..102000918,+!p4@BHLHB9!0.43!1.69!BHLHB9;;chr14:69259772..69259790,-!p1@ZFP36L1!0.42!243.03!ZFP36L1;;chr7:150076406..150076456,+!p1@ZNF775!0.42!10.57!ZNF775;;chr17:38498402..38498445,+!p3@RARA!0.42!8.03!RARA;;chr19:11071652..11071682,+!p3@SMARCA4!0.42!7.61!SMARCA4;;chr10:97890024..97890064,+!p2@ZNF518A!0.42!5.92!ZNF518A;;chr16:73092963..73093001,-!p2@ZFHX3!0.42!4.65!ZFHX3;;chr17:46622070..46622109,-!p1@HOXB2!0.42!4.65!HOXB2;;chr2:113993052..113993097,-!p2@PAX8!0.42!4.65!PAX8;;chr19:11909329..11909394,+!p1@ZNF491!0.42!4.23!ZNF491;;chr1:8483723..8483752,-!p12@RERE!0.42!2.96!RERE;;chr9:102584241..102584261,+!p4@NR4A3!0.42!2.96!NR4A3;;chr15:37392593..37392607,-!p13@MEIS2!0.42!2.11!MEIS2;;chr3:193853927..193853944,+!p1@HES1!0.41!75.66!HES1;;chr20:39946279..39946356,-!p1@ZHX3!0.41!35.50!ZHX3;;chr10:111985713..111985774,+!p2@MXI1!0.41!21.56!MXI1;;chr18:53255415..53255491,-!p1@TCF4!0.41!19.44!TCF4;;chr13:37393351..37393423,+!p1@RFXAP!0.41!16.91!RFXAP;;chr19:57106647..57106686,+!p1@ZNF71!0.41!15.22!ZNF71;;chrX:24167548..24167617,+!p2@ZFX!0.41!6.34!ZFX;;chr1:8483756..8483809,-!p5@RERE!0.41!5.92!RERE;;chr16:68564003..68564050,+!p2@ZFP90!0.41!5.49!ZFP90;;chr19:35225078..35225120,+!p2@ZNF181!0.41!4.65!ZNF181;;chr1:151032833..151032850,+!p3@MLLT11!0.41!4.65!MLLT11;;chr7:21467642..21467671,+!p2@SP4!0.41!4.65!SP4;;chr4:146402925..146402957,+!p4@SMAD1!0.41!4.65!SMAD1;; | |expression_enrichment_score=chr7:100065686..100065701,-!p2@TSC22D4!2.83!679.21!TSC22D4;;chr21:34442439..34442455,+!p1@OLIG1!2.48!303.89!OLIG1;;chr22:38380543..38380569,-!p1@SOX10!2.32!208.37!SOX10;;chr21:34398234..34398250,+!p1@OLIG2!2.13!133.98!OLIG2;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!2.08!118.34!PEG3;;chr3:181429704..181429722,+!p1@SOX2!2.00!98.06!SOX2;;chr10:48355030..48355090,+!p1@ZNF488!1.95!112.00!ZNF488;;chr12:106976774..106976788,+!p1@RFX4!1.93!84.95!RFX4;;chr3:147127177..147127194,+!p2@ZIC1!1.89!76.50!ZIC1;;chr11:61520075..61520136,+!p1@C11orf9!1.87!150.47!C11orf9;;chr3:181429741..181429767,+!p2@SOX2!1.83!66.36!SOX2;;chr3:147127142..147127168,+!p1@ZIC1!1.82!65.09!ZIC1;;chr4:57547454..57547469,-!p1@HOPX!1.78!59.17!HOPX;;chr16:1031762..1031781,+!p1@SOX8!1.75!54.95!SOX8;;chr2:145277882..145277967,-!p3@ZEB2!1.71!84.11!ZEB2;;chr10:134599649..134599653,-!p1@NKX6-2!1.67!46.07!NKX6-2;;chr2:5832508..5832524,+!p1@SOX11!1.66!44.80!SOX11;;chr2:105470562..105470582,+!p@chr2:105470562..105470582,+!1.66!44.38!POU3F3;;chr21:34442540..34442560,+!p2@OLIG1!1.61!40.15!OLIG1;;chr1:2461692..2461710,-!p1@HES5!1.57!35.93!HES5;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.57!35.93!HOXC5;;chr14:33403881..33403924,+!p1@NPAS3!1.57!35.93!NPAS3;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.55!34.66!ZBED1;;chr17:46692457..46692484,-!p2@HOXB8!1.55!34.24!HOXB8;;chr6:19837592..19837621,+!p1@ID4!1.54!199.07!ID4;;chr20:50179368..50179392,-!p2@NFATC2!1.54!43.11!NFATC2;;chr12:103351444..103351461,+!p1@ASCL1!1.54!33.39!ASCL1;;chr17:46682321..46682362,-!p1@HOXB6!1.51!31.28!HOXB6;;chr2:19558373..19558392,-!p1@OSR1!1.49!79.88!OSR1;;chr1:40105299..40105326,-!p1@HEYL!1.49!29.59!HEYL;;chr9:77112244..77112262,+!p1@RORB!1.47!31.70!RORB;;chr11:8102846..8102892,+!p1@TUB!1.45!37.19!TUB;;chr6:126070769..126070801,+!p1@HEY2!1.45!30.85!HEY2;;chr19:46801639..46801699,+!p1@HIF3A!1.45!27.05!HIF3A;;chr2:223163706..223163730,-!p1@PAX3!1.45!27.05!PAX3;;chr17:53342311..53342400,+!p1@HLF!1.43!29.59!HLF;;chr8:80679993..80680011,-!p1@HEY1!1.42!35.93!HEY1;;chr15:80696703..80696754,+!p1@ARNT2!1.42!33.81!ARNT2;;chr4:81118647..81118666,+!p1@PRDM8!1.42!33.39!PRDM8;;chr20:62680984..62680999,-!p1@SOX18!1.41!32.12!SOX18;;chr7:27192185..27192209,-!p1@HOXA3!1.41!24.94!HOXA3;;chr13:100634031..100634045,+!p1@ZIC2!1.41!24.51!ZIC2;;chr5:158526917..158526932,-!p1@EBF1!1.40!58.33!EBF1;;chr12:106976678..106976708,+!p2@RFX4!1.39!23.67!RFX4;;chr4:57547820..57547829,-!p8@HOPX!1.39!23.67!HOPX;;chr2:239148671..239148686,-!p1@HES6!1.37!79.46!HES6;;chr17:46692624..46692659,-!p3@HOXB8!1.37!22.40!HOXB8;;chr7:27196217..27196246,-!p2@HOXA7!1.37!22.40!HOXA7;;chr7:27205136..27205164,-!p1@HOXA9!1.36!21.98!HOXA9;;chr5:92919100..92919135,+!p3@NR2F1!1.35!25.78!NR2F1;;chr19:46800289..46800327,+!p2@HIF3A!1.35!21.56!HIF3A;;chr16:86600426..86600441,+!p1@FOXC2!1.31!47.76!FOXC2;;chr12:26277817..26277863,-!p2@BHLHE41!1.31!26.20!BHLHE41;;chr16:79634624..79634642,-!p1@MAF!1.29!71.85!MAF;;chr12:52445218..52445237,+!p1@NR4A1!1.28!223.16!NR4A1;;chr8:53322304..53322340,-!p1@ST18!1.28!18.17!ST18;;chr17:46690839..46690884,-!p1@HOXB8!1.27!17.75!HOXB8;;chr2:145275982..145276003,-!p7@ZEB2!1.25!16.91!ZEB2;;chr8:55370487..55370503,+!p1@SOX17!1.25!16.91!SOX17;;chr15:57511609..57511651,+!p2@TCF12!1.24!27.47!TCF12;;chr1:214161272..214161322,+!p1@PROX1!1.23!22.40!PROX1;;chr5:92918919..92918942,+!p1@NR2F1!1.22!69.32!NR2F1;;chr13:72441315..72441454,-!p1@DACH1!1.22!30.85!DACH1;;chr5:2751762..2751784,-!p1@IRX2!1.22!15.64!IRX2;;chr8:25902876..25902936,-!p1@EBF2!1.20!14.79!EBF2;;chr17:46688334..46688385,-!p1@HOXB7!1.19!21.13!HOXB7;;chr10:131762504..131762555,-!p1@EBF3!1.19!14.37!EBF3;;chr10:48359344..48359376,+!p2@ZNF488!1.19!14.37!ZNF488;;chr21:39870339..39870443,-!p1@ERG!1.19!14.37!ERG;;chr14:61116183..61116208,-!p1@SIX1!1.18!53.68!SIX1;;chr1:61548069..61548102,+!p3@NFIA!1.18!34.24!NFIA;;chr16:51185172..51185197,-!p1@SALL1!1.17!13.95!SALL1;;chr17:46692287..46692317,-!p7@HOXB8!1.17!13.95!HOXB8;;chr18:76739816..76739822,+!p1@SALL3!1.17!13.95!SALL3;;chr8:30890810..30890880,-!p1@PURG!1.17!13.95!PURG;;chr10:64576105..64576133,-!p1@EGR2!1.16!27.90!EGR2;;chr11:31839488..31839515,-!p3@PAX6!1.16!13.52!PAX6;;chr14:22005197..22005261,-!p3@SALL2!1.16!13.52!SALL2;;chr17:46675619..46675642,-!p5@HOXB6!1.16!13.52!HOXB6;;chr16:79634595..79634620,-!p2@MAF!1.15!24.09!MAF;;chr8:80680024..80680046,-!p2@HEY1!1.15!14.79!HEY1;;chr5:158527104..158527135,-!p4@EBF1!1.15!13.10!EBF1;;chr17:74137321..74137337,-!p1@FOXJ1!1.15!13.10!FOXJ1;;chr2:176994408..176994492,+!p1@HOXD8!1.15!13.10!HOXD8;;chr19:13134772..13134822,+!p2@NFIX!1.14!19.02!NFIX;;chr17:46692603..46692621,-!p6@HOXB8!1.14!12.68!HOXB8;;chr19:58545454..58545498,+!p1@ZSCAN1!1.14!12.68!ZSCAN1;;chr20:21494684..21494708,-!p1@NKX2-2!1.14!12.68!NKX2-2;;chr4:57547751..57547764,-!p6@HOPX!1.14!12.68!HOPX;;chr12:54779511..54779577,-!p5@ZNF385A!1.14!12.68!ZNF385A;;chr17:7492684..7492778,-!p2@SOX15!1.12!25.78!SOX15;;chr6:85474299..85474324,-!p1@TBX18!1.12!21.98!TBX18;;chr12:54393880.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OR1;;chr15:80843484..80843499,+!p5@ARNT2!0.43!1.69!ARNT2;;chr16:31076332..31076388,-!p3@ZNF668!0.43!1.69!ZNF668;;chr16:49698178..49698209,-!p1@ZNF423!0.43!1.69!ZNF423;;chr16:79633883..79633892,-!p6@MAF!0.43!1.69!MAF;;chr16:86600458..86600461,+!p3@FOXC2!0.43!1.69!FOXC2;;chr16:86601052..86601066,+!p4@FOXC2!0.43!1.69!FOXC2;;chr17:46132044..46132080,+!p4@NFE2L1!0.43!1.69!NFE2L1;;chr17:46675469..46675481,-!p4@HOXB6!0.43!1.69!HOXB6;;chr17:46682368..46682373,-!p12@HOXB6!0.43!1.69!HOXB6;;chr17:53342451..53342471,+!p4@HLF!0.43!1.69!HLF;;chr18:22932004..22932021,-!p2@ZNF521!0.43!1.69!ZNF521;;chr18:42260920..42260951,+!p4@SETBP1!0.43!1.69!SETBP1;;chr18:45663438..45663456,-!p3@ZBTB7C!0.43!1.69!ZBTB7C;;chr18:53068940..53068951,-!p21@TCF4!0.43!1.69!TCF4;;chr18:53177899..53177918,-!p33@TCF4!0.43!1.69!TCF4;;chr19:13135832..13135853,+!p16@NFIX!0.43!1.69!NFIX;;chr19:13213954..13214021,-!p4@LYL1!0.43!1.69!LYL1;;chr19:3366429..3366439,+!p16@NFIC!0.43!1.69!NFIC;;chr10:28032421..28032494,-!p2@MKX!0.43!1.69!MKX;;chr11:47399996..47400014,-!p4@SPI1!0.43!1.69!SPI1;;chr11:8040818..8040840,+!p5@TUB!0.43!1.69!TUB;;chr11:85393886..85393913,-!p3@CREBZF!0.43!1.69!CREBZF;;chr12:103352326..103352351,+!p3@ASCL1!0.43!1.69!ASCL1;;chr12:51611583..51611612,-!p4@POU6F1!0.43!1.69!POU6F1;;chr12:52448151..52448200,+!p8@NR4A1!0.43!1.69!NR4A1;;chr12:52448293..52448318,+!p10@NR4A1!0.43!1.69!NR4A1;;chr12:54348655..54348693,+!p1@HOXC12!0.43!1.69!HOXC12;;chr12:54379136..54379150,+!p4@HOXC5!0.43!1.69!HOXC5;;chr12:54694653..54694672,-!p2@NFE2!0.43!1.69!NFE2;;chr12:56414851..56414871,+!p6@IKZF4!0.43!1.69!IKZF4;;chr13:100623360..100623373,-!p2@ZIC5!0.43!1.69!ZIC5;;chr13:37494391..37494406,-!p5@SMAD9!0.43!1.69!SMAD9;;chr14:24020596..24020624,-!p3@ZFHX2!0.43!1.69!ZFHX2;;chrX:147582402..147582414,+!p5@AFF2!0.43!1.69!AFF2;;chr9:124991204..124991246,-!p1@LHX6!0.43!1.69!LHX6;;chr9:3525848..3525863,-!p6@RFX3!0.43!1.69!RFX3;;chrX:107018836..107018862,-!p8@TSC22D3!0.43!1.69!TSC22D3;;chrX:136648297..136648319,+!p3@ZIC3!0.43!1.69!ZIC3;;chr9:14083091..14083096,-!p12@NFIB!0.43!1.69!NFIB;;chrX:84498924..84498935,+!p5@ZNF711!0.43!1.69!ZNF711;;chrX:102000893..102000918,+!p4@BHLHB9!0.43!1.69!BHLHB9;;chr14:69259772..69259790,-!p1@ZFP36L1!0.42!243.03!ZFP36L1;;chr7:150076406..150076456,+!p1@ZNF775!0.42!10.57!ZNF775;;chr17:38498402..38498445,+!p3@RARA!0.42!8.03!RARA;;chr19:11071652..11071682,+!p3@SMARCA4!0.42!7.61!SMARCA4;;chr10:97890024..97890064,+!p2@ZNF518A!0.42!5.92!ZNF518A;;chr16:73092963..73093001,-!p2@ZFHX3!0.42!4.65!ZFHX3;;chr17:46622070..46622109,-!p1@HOXB2!0.42!4.65!HOXB2;;chr2:113993052..113993097,-!p2@PAX8!0.42!4.65!PAX8;;chr19:11909329..11909394,+!p1@ZNF491!0.42!4.23!ZNF491;;chr1:8483723..8483752,-!p12@RERE!0.42!2.96!RERE;;chr9:102584241..102584261,+!p4@NR4A3!0.42!2.96!NR4A3;;chr15:37392593..37392607,-!p13@MEIS2!0.42!2.11!MEIS2;;chr3:193853927..193853944,+!p1@HES1!0.41!75.66!HES1;;chr20:39946279..39946356,-!p1@ZHX3!0.41!35.50!ZHX3;;chr10:111985713..111985774,+!p2@MXI1!0.41!21.56!MXI1;;chr18:53255415..53255491,-!p1@TCF4!0.41!19.44!TCF4;;chr13:37393351..37393423,+!p1@RFXAP!0.41!16.91!RFXAP;;chr19:57106647..57106686,+!p1@ZNF71!0.41!15.22!ZNF71;;chrX:24167548..24167617,+!p2@ZFX!0.41!6.34!ZFX;;chr1:8483756..8483809,-!p5@RERE!0.41!5.92!RERE;;chr16:68564003..68564050,+!p2@ZFP90!0.41!5.49!ZFP90;;chr19:35225078..35225120,+!p2@ZNF181!0.41!4.65!ZNF181;;chr1:151032833..151032850,+!p3@MLLT11!0.41!4.65!MLLT11;;chr7:21467642..21467671,+!p2@SP4!0.41!4.65!SP4;;chr4:146402925..146402957,+!p4@SMAD1!0.41!4.65!SMAD1;; | ||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001016;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002240 | |||
|ffid_belonging_in_development=UBERON:0002532,UBERON:0006601,UBERON:0006241,UBERON:0003057,UBERON:0010316 | |ffid_belonging_in_development=UBERON:0002532,UBERON:0006601,UBERON:0006241,UBERON:0003057,UBERON:0010316 | ||
|fonse_cell_line= | |fonse_cell_line= | ||
Line 39: | Line 42: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/spinal%2520cord%252c%2520fetal%252c%2520donor1.CNhs11764.10056-101H2.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/spinal%2520cord%252c%2520fetal%252c%2520donor1.CNhs11764.10056-101H2.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/spinal%2520cord%252c%2520fetal%252c%2520donor1.CNhs11764.10056-101H2.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/spinal%2520cord%252c%2520fetal%252c%2520donor1.CNhs11764.10056-101H2.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/spinal%2520cord%252c%2520fetal%252c%2520donor1.CNhs11764.10056-101H2.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10056-101H2 | |id=FF:10056-101H2 | ||
|is_a=EFO:0002091;;FF:0010056 | |is_a=EFO:0002091;;FF:0010056 | ||
|is_obsolete= | |is_obsolete= | ||
| | |library_id=CNhs11764 | ||
|library_id_phase_based=2:CNhs11764 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10056 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10056 | |||
|name=spinal cord, fetal, donor1 | |name=spinal cord, fetal, donor1 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
Line 48: | Line 61: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11764,LSID820,release009,COMPLETED | |profile_hcage=CNhs11764,LSID820,release009,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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Line 87: | Line 101: | ||
|top_motifs=DBP:3.27666669141;HOX{A6,A7,B6,B7}:3.22968181235;SOX5:3.21700716068;MED-1{core}:3.08004502252;MYFfamily:2.99559536473;SOX{8,9,10}:2.9389146543;ZNF384:2.90718811361;ZFP161:2.86970101784;GCM1,2:2.8541300097;HIC1:2.83552128453;MTE{core}:2.81006705045;SOX2:2.79441076449;REST:2.78933841281;MAZ:2.7855792436;NHLH1,2:2.78255763796;TFAP2B:2.77825821858;EGR1..3:2.70768012595;RBPJ:2.7014654955;SMAD1..7,9:2.62846300441;MZF1:2.59083022703;MYBL2:2.58759069;BREu{core}:2.48803468913;MTF1:2.4869358331;GTF2I:2.45017094112;SPZ1:2.42807567858;EP300:2.41824965675;GATA4:2.3898228692;KLF4:2.34158988803;PATZ1:2.31466650156;PAX5:2.30772834289;GFI1B:2.29926266417;POU5F1:2.26577272352;ZBTB6:2.25223624192;FOXP1:2.17158100055;RREB1:2.16685080508;FOXM1:2.1462819294;SOX17:2.1449783122;PRDM1:2.1277577898;RFX1:2.11683668164;CUX2:2.0794811963;ZIC1..3:2.07795846851;ZNF423:2.03121661395;NFIX:1.95381552367;PRRX1,2:1.88495267553;NKX2-3_NKX2-5:1.83925582572;EBF1:1.82720655485;LMO2:1.82369786999;NKX3-2:1.79487015609;TGIF1:1.79418956157;TOPORS:1.72808955215;TFAP2{A,C}:1.66486181466;XBP1:1.63105416387;ATF2:1.6247726618;TFDP1:1.54538307191;LEF1_TCF7_TCF7L1,2:1.48082770803;SP1:1.47878110179;TLX1..3_NFIC{dimer}:1.41368781977;ONECUT1,2:1.41183136739;IKZF2:1.40332007012;OCT4_SOX2{dimer}:1.40141695462;ESR1:1.39530665145;HOX{A4,D4}:1.37888049761;FOXD3:1.37572018799;TAL1_TCF{3,4,12}:1.37517771426;TBP:1.36174259826;POU3F1..4:1.30588843229;GLI1..3:1.28752391394;JUN:1.23439897841;GTF2A1,2:1.23177148146;HBP1_HMGB_SSRP1_UBTF:1.21006460023;FOXL1:1.19301090274;VSX1,2:1.15600797886;POU6F1:1.14428147725;NKX6-1,2:1.1306534054;PAX6:1.10089356641;BPTF:1.07738595271;ADNP_IRX_SIX_ZHX:1.05110900337;FOXP3:1.03723990837;GFI1:1.03175928322;HMGA1,2:1.02193100737;NR6A1:1.01190589484;POU1F1:1.00730715702;ALX1:0.980750289385;RFX2..5_RFXANK_RFXAP:0.958429757986;NANOG:0.918476776634;MAFB:0.901977763524;IKZF1:0.897618908615;XCPE1{core}:0.871354972585;FOXQ1:0.862569764455;AHR_ARNT_ARNT2:0.831699121505;HOXA9_MEIS1:0.822713939418;CDC5L:0.809777021286;LHX3,4:0.761830870879;NKX2-1,4:0.743510056248;FOX{I1,J2}:0.696484968179;NR5A1,2:0.681116351795;NR3C1:0.680796138914;MEF2{A,B,C,D}:0.643154665241;RORA:0.613882145984;ZNF238:0.604292913526;UFEwm:0.565062446822;NRF1:0.521150125461;GZF1:0.501895495381;NFY{A,B,C}:0.47173208943;T:0.467325282016;AIRE:0.461201137574;FOX{F1,F2,J1}:0.395201728825;ZNF143:0.379444283067;TFCP2:0.357010650747;NFATC1..3:0.356861737743;GATA6:0.310686900065;TEAD1:0.300130547712;TEF:0.216838808892;PBX1:0.202882630887;HMX1:0.181677042143;STAT2,4,6:0.178524423968;YY1:0.172724700952;NR1H4:0.154820674959;TFAP4:0.144918323238;ARID5B:0.131299213327;RXR{A,B,G}:0.101047882969;NKX3-1:0.0886125158971;PAX4:0.0870594148309;CREB1:0.0504140384261;DMAP1_NCOR{1,2}_SMARC:0.0439475489288;ALX4:0.0403291349071;SRF:0.0339489348668;TBX4,5:-0.045108296622;IRF7:-0.0518436103466;FOXA2:-0.0708415538115;PAX2:-0.0709347277481;MYOD1:-0.0769210630887;NANOG{mouse}:-0.0780891272131;ZEB1:-0.092043756126;STAT1,3:-0.0960920312849;FOXO1,3,4:-0.12345742785;HNF4A_NR2F1,2:-0.126339505925;CDX1,2,4:-0.128837360915;AR:-0.129081826262;PDX1:-0.155336051286;PITX1..3:-0.160371983766;SREBF1,2:-0.171814497845;PAX3,7:-0.173699626517;FOXN1:-0.184670197639;TLX2:-0.191839879665;PAX1,9:-0.203969383567;EVI1:-0.223155170691;NFIL3:-0.236363339644;IRF1,2:-0.26521221592;ATF4:-0.283479152508;HNF1A:-0.288922043305;ATF6:-0.299304985895;ZNF148:-0.314017204726;FOX{D1,D2}:-0.342299592057;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.403314563813;CRX:-0.428381109971;HAND1,2:-0.45629433418;ATF5_CREB3:-0.462369838223;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.477768907382;HSF1,2:-0.488587554824;RXRA_VDR{dimer}:-0.51772401976;ZBTB16:-0.545749509653;NFE2L2:-0.58464639309;SNAI1..3:-0.594514366347;E2F1..5:-0.630950517734;SPIB:-0.710048245681;ESRRA:-0.745294181636;SPI1:-0.758748426459;TP53:-0.822303978078;ETS1,2:-0.845100662268;NFKB1_REL_RELA:-0.859079568641;bHLH_family:-0.897876945803;RUNX1..3:-0.952343946763;PAX8:-0.954438431545;PPARG:-0.978570946813;HIF1A:-1.01548145879;CEBPA,B_DDIT3:-1.13190443375;NFE2L1:-1.13406588058;FOSL2:-1.1432561121;FOS_FOS{B,L1}_JUN{B,D}:-1.17807081128;BACH2:-1.19754208897;HLF:-1.27927804649;NFE2:-1.29347026188;HOX{A5,B5}:-1.32064583411;EN1,2:-1.43846177629;ELK1,4_GABP{A,B1}:-1.46541764985;POU2F1..3:-1.59920897497;NKX2-2,8:-1.60265523196;MYB:-1.60824194335;ELF1,2,4:-1.62439964759;HES1:-1.79624053888;STAT5{A,B}:-3.08068458381 | |top_motifs=DBP:3.27666669141;HOX{A6,A7,B6,B7}:3.22968181235;SOX5:3.21700716068;MED-1{core}:3.08004502252;MYFfamily:2.99559536473;SOX{8,9,10}:2.9389146543;ZNF384:2.90718811361;ZFP161:2.86970101784;GCM1,2:2.8541300097;HIC1:2.83552128453;MTE{core}:2.81006705045;SOX2:2.79441076449;REST:2.78933841281;MAZ:2.7855792436;NHLH1,2:2.78255763796;TFAP2B:2.77825821858;EGR1..3:2.70768012595;RBPJ:2.7014654955;SMAD1..7,9:2.62846300441;MZF1:2.59083022703;MYBL2:2.58759069;BREu{core}:2.48803468913;MTF1:2.4869358331;GTF2I:2.45017094112;SPZ1:2.42807567858;EP300:2.41824965675;GATA4:2.3898228692;KLF4:2.34158988803;PATZ1:2.31466650156;PAX5:2.30772834289;GFI1B:2.29926266417;POU5F1:2.26577272352;ZBTB6:2.25223624192;FOXP1:2.17158100055;RREB1:2.16685080508;FOXM1:2.1462819294;SOX17:2.1449783122;PRDM1:2.1277577898;RFX1:2.11683668164;CUX2:2.0794811963;ZIC1..3:2.07795846851;ZNF423:2.03121661395;NFIX:1.95381552367;PRRX1,2:1.88495267553;NKX2-3_NKX2-5:1.83925582572;EBF1:1.82720655485;LMO2:1.82369786999;NKX3-2:1.79487015609;TGIF1:1.79418956157;TOPORS:1.72808955215;TFAP2{A,C}:1.66486181466;XBP1:1.63105416387;ATF2:1.6247726618;TFDP1:1.54538307191;LEF1_TCF7_TCF7L1,2:1.48082770803;SP1:1.47878110179;TLX1..3_NFIC{dimer}:1.41368781977;ONECUT1,2:1.41183136739;IKZF2:1.40332007012;OCT4_SOX2{dimer}:1.40141695462;ESR1:1.39530665145;HOX{A4,D4}:1.37888049761;FOXD3:1.37572018799;TAL1_TCF{3,4,12}:1.37517771426;TBP:1.36174259826;POU3F1..4:1.30588843229;GLI1..3:1.28752391394;JUN:1.23439897841;GTF2A1,2:1.23177148146;HBP1_HMGB_SSRP1_UBTF:1.21006460023;FOXL1:1.19301090274;VSX1,2:1.15600797886;POU6F1:1.14428147725;NKX6-1,2:1.1306534054;PAX6:1.10089356641;BPTF:1.07738595271;ADNP_IRX_SIX_ZHX:1.05110900337;FOXP3:1.03723990837;GFI1:1.03175928322;HMGA1,2:1.02193100737;NR6A1:1.01190589484;POU1F1:1.00730715702;ALX1:0.980750289385;RFX2..5_RFXANK_RFXAP:0.958429757986;NANOG:0.918476776634;MAFB:0.901977763524;IKZF1:0.897618908615;XCPE1{core}:0.871354972585;FOXQ1:0.862569764455;AHR_ARNT_ARNT2:0.831699121505;HOXA9_MEIS1:0.822713939418;CDC5L:0.809777021286;LHX3,4:0.761830870879;NKX2-1,4:0.743510056248;FOX{I1,J2}:0.696484968179;NR5A1,2:0.681116351795;NR3C1:0.680796138914;MEF2{A,B,C,D}:0.643154665241;RORA:0.613882145984;ZNF238:0.604292913526;UFEwm:0.565062446822;NRF1:0.521150125461;GZF1:0.501895495381;NFY{A,B,C}:0.47173208943;T:0.467325282016;AIRE:0.461201137574;FOX{F1,F2,J1}:0.395201728825;ZNF143:0.379444283067;TFCP2:0.357010650747;NFATC1..3:0.356861737743;GATA6:0.310686900065;TEAD1:0.300130547712;TEF:0.216838808892;PBX1:0.202882630887;HMX1:0.181677042143;STAT2,4,6:0.178524423968;YY1:0.172724700952;NR1H4:0.154820674959;TFAP4:0.144918323238;ARID5B:0.131299213327;RXR{A,B,G}:0.101047882969;NKX3-1:0.0886125158971;PAX4:0.0870594148309;CREB1:0.0504140384261;DMAP1_NCOR{1,2}_SMARC:0.0439475489288;ALX4:0.0403291349071;SRF:0.0339489348668;TBX4,5:-0.045108296622;IRF7:-0.0518436103466;FOXA2:-0.0708415538115;PAX2:-0.0709347277481;MYOD1:-0.0769210630887;NANOG{mouse}:-0.0780891272131;ZEB1:-0.092043756126;STAT1,3:-0.0960920312849;FOXO1,3,4:-0.12345742785;HNF4A_NR2F1,2:-0.126339505925;CDX1,2,4:-0.128837360915;AR:-0.129081826262;PDX1:-0.155336051286;PITX1..3:-0.160371983766;SREBF1,2:-0.171814497845;PAX3,7:-0.173699626517;FOXN1:-0.184670197639;TLX2:-0.191839879665;PAX1,9:-0.203969383567;EVI1:-0.223155170691;NFIL3:-0.236363339644;IRF1,2:-0.26521221592;ATF4:-0.283479152508;HNF1A:-0.288922043305;ATF6:-0.299304985895;ZNF148:-0.314017204726;FOX{D1,D2}:-0.342299592057;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.403314563813;CRX:-0.428381109971;HAND1,2:-0.45629433418;ATF5_CREB3:-0.462369838223;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.477768907382;HSF1,2:-0.488587554824;RXRA_VDR{dimer}:-0.51772401976;ZBTB16:-0.545749509653;NFE2L2:-0.58464639309;SNAI1..3:-0.594514366347;E2F1..5:-0.630950517734;SPIB:-0.710048245681;ESRRA:-0.745294181636;SPI1:-0.758748426459;TP53:-0.822303978078;ETS1,2:-0.845100662268;NFKB1_REL_RELA:-0.859079568641;bHLH_family:-0.897876945803;RUNX1..3:-0.952343946763;PAX8:-0.954438431545;PPARG:-0.978570946813;HIF1A:-1.01548145879;CEBPA,B_DDIT3:-1.13190443375;NFE2L1:-1.13406588058;FOSL2:-1.1432561121;FOS_FOS{B,L1}_JUN{B,D}:-1.17807081128;BACH2:-1.19754208897;HLF:-1.27927804649;NFE2:-1.29347026188;HOX{A5,B5}:-1.32064583411;EN1,2:-1.43846177629;ELK1,4_GABP{A,B1}:-1.46541764985;POU2F1..3:-1.59920897497;NKX2-2,8:-1.60265523196;MYB:-1.60824194335;ELF1,2,4:-1.62439964759;HES1:-1.79624053888;STAT5{A,B}:-3.08068458381 | ||
|xref= | |xref= | ||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10056-101H2;search_select_hide=table117:FF:10056-101H2 | |||
| | |||
}} | }} |
Latest revision as of 12:18, 3 June 2020
Name: | spinal cord, fetal, donor1 |
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Species: | Human (Homo sapiens) |
Library ID: | CNhs11764 |
Sample type: | tissues |
Genomic View: | UCSC |
RefEX: | Specific genes |
FANTOM CAT: | 1, 2 |
CAGEd-oPOSSUM: | link |
ZENBU report : | link |
Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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Download raw sequence, BAM & CTSS | ||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11764
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11764
Novel motif | Logo | P-value |
---|---|---|
1 | 1 | 0.0296 |
10 | 10 | 0.0353 |
100 | 100 | 0.375 |
101 | 101 | 0.903 |
102 | 102 | 0.899 |
103 | 103 | 0.0636 |
104 | 104 | 0.239 |
105 | 105 | 0.162 |
106 | 106 | 0.157 |
107 | 107 | 0.541 |
108 | 108 | 0.765 |
109 | 109 | 0.00259 |
11 | 11 | 0.0154 |
110 | 110 | 0.0434 |
111 | 111 | 0.131 |
112 | 112 | 0.394 |
113 | 113 | 0.266 |
114 | 114 | 0.0313 |
115 | 115 | 0.331 |
116 | 116 | 0.47 |
117 | 117 | 0.00393 |
118 | 118 | 0.0897 |
119 | 119 | 0.149 |
12 | 12 | 0.539 |
120 | 120 | 0.161 |
121 | 121 | 0.735 |
122 | 122 | 0.736 |
123 | 123 | 0.56 |
124 | 124 | 0.393 |
125 | 125 | 0.462 |
126 | 126 | 0.106 |
127 | 127 | 0.176 |
128 | 128 | 0.45 |
129 | 129 | 0.467 |
13 | 13 | 0.00685 |
130 | 130 | 0.418 |
131 | 131 | 0.24 |
132 | 132 | 0.349 |
133 | 133 | 0.0817 |
134 | 134 | 0.645 |
135 | 135 | 0.263 |
136 | 136 | 0.0402 |
137 | 137 | 0.316 |
138 | 138 | 0.567 |
139 | 139 | 0.0812 |
14 | 14 | 0.668 |
140 | 140 | 0.186 |
141 | 141 | 0.218 |
142 | 142 | 0.784 |
143 | 143 | 0.00108 |
144 | 144 | 0.947 |
145 | 145 | 0.396 |
146 | 146 | 0.585 |
147 | 147 | 0.767 |
148 | 148 | 0.193 |
149 | 149 | 0.163 |
15 | 15 | 0.0341 |
150 | 150 | 0.239 |
151 | 151 | 0.662 |
152 | 152 | 0.174 |
153 | 153 | 0.451 |
154 | 154 | 0.664 |
155 | 155 | 0.216 |
156 | 156 | 0.427 |
157 | 157 | 0.479 |
158 | 158 | 0.752 |
159 | 159 | 0.155 |
16 | 16 | 0.134 |
160 | 160 | 0.257 |
161 | 161 | 0.149 |
162 | 162 | 0.551 |
163 | 163 | 0.524 |
164 | 164 | 0.0359 |
165 | 165 | 0.352 |
166 | 166 | 0.255 |
167 | 167 | 0.239 |
168 | 168 | 0.625 |
169 | 169 | 0.0109 |
17 | 17 | 0.128 |
18 | 18 | 0.0657 |
19 | 19 | 0.415 |
2 | 2 | 0.932 |
20 | 20 | 0.15 |
21 | 21 | 0.16 |
22 | 22 | 0.283 |
23 | 23 | 0.484 |
24 | 24 | 0.0494 |
25 | 25 | 0.47 |
26 | 26 | 5.32485e-4 |
27 | 27 | 0.664 |
28 | 28 | 0.507 |
29 | 29 | 0.00809 |
3 | 3 | 0.031 |
30 | 30 | 0.437 |
31 | 31 | 0.917 |
32 | 32 | 0.801 |
33 | 33 | 0.0939 |
34 | 34 | 0.997 |
35 | 35 | 0.391 |
36 | 36 | 0.103 |
37 | 37 | 0.0292 |
38 | 38 | 0.254 |
39 | 39 | 0.805 |
4 | 4 | 0.936 |
40 | 40 | 0.0557 |
41 | 41 | 0.155 |
42 | 42 | 0.123 |
43 | 43 | 0.131 |
44 | 44 | 0.252 |
45 | 45 | 0.852 |
46 | 46 | 0.0516 |
47 | 47 | 0.0426 |
48 | 48 | 0.0697 |
49 | 49 | 0.13 |
5 | 5 | 0.319 |
50 | 50 | 0.576 |
51 | 51 | 0.39 |
52 | 52 | 0.931 |
53 | 53 | 0.899 |
54 | 54 | 0.466 |
55 | 55 | 0.242 |
56 | 56 | 0.52 |
57 | 57 | 0.313 |
58 | 58 | 0.22 |
59 | 59 | 0.207 |
6 | 6 | 0.977 |
60 | 60 | 0.195 |
61 | 61 | 0.0828 |
62 | 62 | 0.13 |
63 | 63 | 0.194 |
64 | 64 | 0.202 |
65 | 65 | 0.302 |
66 | 66 | 0.11 |
67 | 67 | 0.302 |
68 | 68 | 0.348 |
69 | 69 | 0.763 |
7 | 7 | 0.105 |
70 | 70 | 0.0109 |
71 | 71 | 0.00779 |
72 | 72 | 0.222 |
73 | 73 | 0.0394 |
74 | 74 | 0.793 |
75 | 75 | 0.0133 |
76 | 76 | 0.149 |
77 | 77 | 0.239 |
78 | 78 | 0.00829 |
79 | 79 | 0.998 |
8 | 8 | 0.103 |
80 | 80 | 0.686 |
81 | 81 | 0.583 |
82 | 82 | 0.545 |
83 | 83 | 0.358 |
84 | 84 | 0.677 |
85 | 85 | 0.391 |
86 | 86 | 0.136 |
87 | 87 | 0.00488 |
88 | 88 | 0.731 |
89 | 89 | 0.427 |
9 | 9 | 0.649 |
90 | 90 | 0.0698 |
91 | 91 | 0.794 |
92 | 92 | 0.398 |
93 | 93 | 0.297 |
94 | 94 | 0.058 |
95 | 95 | 0.0114 |
96 | 96 | 0.318 |
97 | 97 | 0.891 |
98 | 98 | 0.11 |
99 | 99 | 0.787 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11764
FANTOM5 (FF) ontology
Direct parent terms
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
UBERON: Anatomy
0000468 (multi-cellular organism)
0000922 (embryo)
0002240 (spinal cord)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0010314 (structure with developmental contribution from neural crest)
0011216 (organ system subdivision)
0000062 (organ)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003103 (compound organ)
0000489 (cavitated compound organ)
0005174 (dorsal region element)
0010317 (germ layer / neural crest derived structure)
0001017 (central nervous system)
0001016 (nervous system)
0001137 (dorsum)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000999 (fetal tissue sample)
0000004 (tissue sample)
0010056 (human spinal cord - fetal sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0002532 (epiblast (generic))
UBERON:0006601 (presumptive ectoderm)
UBERON:0006241 (future spinal cord)
UBERON:0003057 (chordal neural plate)
UBERON:0010316 (germ layer / neural crest)