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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@DRS008410
|DRA_sample_Accession=CAGE@SAMD00005569
|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005569
|accession_numbers=CAGE;DRX008518;DRR009390;DRZ000815;DRZ002200;DRZ012165;DRZ013550
|accession_numbers_RNASeq=sRNA-Seq;DRX037041;DRR041407;DRZ007049
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000483,UBERON:0002384,UBERON:0000479,UBERON:0000064,UBERON:0000062,UBERON:0004120,UBERON:0004457,UBERON:0000061,UBERON:0000465,UBERON:0004923,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0006914,UBERON:0004905,UBERON:0000486,UBERON:0006915,UBERON:0007616,UBERON:0000042,UBERON:0000982,UBERON:0004458,UBERON:0010317,UBERON:0002217,UBERON:0002018,UBERON:0002204,UBERON:0001434,UBERON:0004770
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000483,UBERON:0002384,UBERON:0000479,UBERON:0000064,UBERON:0000062,UBERON:0004120,UBERON:0004457,UBERON:0000061,UBERON:0000465,UBERON:0004923,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0006914,UBERON:0004905,UBERON:0000486,UBERON:0006915,UBERON:0007616,UBERON:0000042,UBERON:0000982,UBERON:0004458,UBERON:0010317,UBERON:0002217,UBERON:0002018,UBERON:0002204,UBERON:0001434,UBERON:0004770
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000151,CL:0002320,CL:0000066,CL:0002371,CL:0000213,CL:0002078,CL:0000499,CL:0000153,CL:0000327,CL:0000447,CL:0000215,CL:0000255,CL:0000214
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000151,CL:0002320,CL:0000066,CL:0002371,CL:0000213,CL:0002078,CL:0000499,CL:0000153,CL:0000327,CL:0000447,CL:0000215,CL:0000255,CL:0000214
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|created_by=
|created_by=
|creation_date=
|creation_date=
|datafreeze_phase=1
|data_phase=2
|datafreeze_phase=2
|def=
|def=
|expression_enrichment_score=chr1:170632285..170632309,+!p1@PRRX1!1.82!73.10!PRRX1;;chr2:19558373..19558392,-!p1@OSR1!1.75!146.87!OSR1;;chr5:158526917..158526932,-!p1@EBF1!1.69!114.92!EBF1;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.67!45.77!HOXC5;;chr9:132427972..132428056,+!p1@PRRX2!1.64!54.99!PRRX2;;chr9:132427883..132427951,+!p2@PRRX2!1.64!42.48!PRRX2;;chr6:85474299..85474324,-!p1@TBX18!1.61!70.14!TBX18;;chr10:131762504..131762555,-!p1@EBF3!1.47!28.65!EBF3;;chr8:25902876..25902936,-!p1@EBF2!1.32!20.09!EBF2;;chr5:158527104..158527135,-!p4@EBF1!1.32!19.76!EBF1;;chr2:239756671..239756732,+!p1@TWIST2!1.31!61.58!TWIST2;;chr7:19157248..19157268,-!p1@TWIST1!1.30!52.03!TWIST1;;chr17:48072574..48072597,-!p1@DLX3!1.30!19.10!DLX3;;chr1:170632477..170632506,+!p6@PRRX1!1.28!18.11!PRRX1;;chr8:72756667..72756736,-!p2@MSC!1.26!26.67!MSC;;chr12:53614115..53614154,-!p1@RARG!1.23!83.97!RARG;;chr14:61116183..61116208,-!p1@SIX1!1.23!59.60!SIX1;;chr20:51588873..51588953,+!p1@TSHZ2!1.23!21.07!TSHZ2;;chr19:13134772..13134822,+!p2@NFIX!1.22!22.72!NFIX;;chr8:72756637..72756664,-!p3@MSC!1.22!17.78!MSC;;chr7:44143925..44143970,+!p1@AEBP1!1.21!331.93!AEBP1;;chr16:54320617..54320643,-!p3@IRX3!1.19!18.44!IRX3;;chr2:239756739..239756755,+!p2@TWIST2!1.17!23.71!TWIST2;;chr1:170633348..170633399,+!p2@PRRX1!1.17!18.77!PRRX1;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!1.16!13.50!HOXC5;;chr16:79634624..79634642,-!p1@MAF!1.15!51.04!MAF;;chr10:63809013..63809041,+!p3@ARID5B!1.14!71.13!ARID5B;;chr1:170632959..170632987,+!p4@PRRX1!1.14!14.16!PRRX1;;chr10:119303078..119303169,+!p2@EMX2!1.12!12.18!EMX2;;chr7:19157043..19157088,-!p2@TWIST1!1.10!29.31!TWIST1;;chr7:28448965..28448994,+!p2@CREB5!1.07!38.20!CREB5;;chr17:26697276..26697303,-!p2@SEBOX,p2@VTN!1.07!10.87!SEBOX;;chr1:170632137..170632172,+!p10@PRRX1!1.05!10.21!PRRX1;;chr12:54378923..54378966,+!p1@HOXC10!1.04!9.88!HOXC10;;chr16:79633894..79633954,-!p3@MAF!1.02!18.44!MAF;;chr16:54320646..54320672,-!p2@IRX3!1.02!14.49!IRX3;;chr2:45236540..45236577,-!p1@SIX2!1.02!9.55!SIX2;;chr5:158527139..158527161,-!p5@EBF1!1.01!9.22!EBF1;;chr11:46299199..46299233,+!p1@CREB3L1!1.00!47.42!CREB3L1;;chr5:134369905..134369972,-!p1@PITX1!1.00!13.83!PITX1;;chr12:54410948..54410992,+!p3@HOXC5!1.00!8.89!HOXC5;;chrY:21906594..21906622,-!p1@KDM5D!1.00!8.89!KDM5D;;chr19:50432453..50432468,+!p1@ATF5!0.99!507.11!ATF5;;chr10:63853436..63853442,+!p4@ARID5B!0.98!47.42!ARID5B;;chr17:26697304..26697335,-!p1@SEBOX,p1@VTN!0.98!8.56!SEBOX;;chr2:176994408..176994492,+!p1@HOXD8!0.98!8.56!HOXD8;;chr11:46299539..46299620,+!p2@CREB3L1!0.97!14.49!CREB3L1;;chr8:72756267..72756296,-!p4@MSC!0.97!12.51!MSC;;chr8:72756213..72756243,-!p5@MSC!0.97!10.87!MSC;;chr7:15726296..15726315,-!p1@MEOX2!0.97!8.23!MEOX2;;chr12:54393880..54393962,+!p1@HOXC9!0.97!8.23!HOXC9;;chr12:52445218..52445237,+!p1@NR4A1!0.96!106.36!NR4A1;;chr16:79634595..79634620,-!p2@MAF!0.96!15.15!MAF;;chr18:19749541..19749557,+!p1@GATA6!0.95!25.36!GATA6;;chr1:170632723..170632739,+!p8@PRRX1!0.95!7.90!PRRX1;;chr21:36260773..36260804,-!p7@RUNX1!0.93!10.21!RUNX1;;chr10:63851669..63851682,+!p10@ARID5B!0.93!8.23!ARID5B;;chr1:170632250..170632277,+!p7@PRRX1!0.93!7.57!PRRX1;;chr1:170633058..170633084,+!p5@PRRX1!0.93!7.57!PRRX1;;chr15:67430351..67430366,+!p10@SMAD3!0.93!7.57!SMAD3;;chr10:63809106..63809127,+!p1@ARID5B!0.92!102.08!ARID5B;;chr16:4366053..4366076,+!p@chr16:4366053..4366076,+!0.92!76.73!GLIS2;;chr12:54772960..54773015,-!p3@ZNF385A!0.92!36.55!ZNF385A;;chr10:63809077..63809089,+!p5@ARID5B!0.92!16.46!ARID5B;;chr6:1610293..1610310,+!p1@FOXC1!0.92!12.51!FOXC1;;chr1:170633262..170633285,+!p3@PRRX1!0.91!8.23!PRRX1;;chr14:24837368..24837401,+!p1@NFATC4!0.90!16.79!NFATC4;;chr1:170632762..170632786,+!p13@PRRX1!0.90!6.92!PRRX1;;chr20:51589402..51589423,+!p6@TSHZ2!0.90!6.92!TSHZ2;;chr7:27213893..27213954,-!p1@HOXA10!0.90!6.92!HOXA10;;chr7:44143997..44144008,+!p3@AEBP1!0.88!8.56!AEBP1;;chr14:75894714..75894733,+!p1@JDP2!0.87!192.64!JDP2;;chr9:110252035..110252057,-!p1@KLF4!0.87!109.33!KLF4;;chr5:174151553..174151610,+!p1@MSX2!0.87!10.87!MSX2;;chr4:26322267..26322334,+!p3@RBPJ!0.86!15.81!RBPJ;;chr7:44143978..44143989,+!p2@AEBP1!0.86!11.85!AEBP1;;chr12:54402745..54402788,+!p1@HOXC8!0.86!6.26!HOXC8;;chr1:170632683..170632696,+!p12@PRRX1!0.86!6.26!PRRX1;;chr20:51589133..51589159,+!p2@TSHZ2!0.86!6.26!TSHZ2;;chr18:22932080..22932170,-!p1@ZNF521!0.84!26.67!ZNF521;;chr12:53625966..53626012,-!p2@RARG!0.84!16.46!RARG;;chr1:170632115..170632136,+!p9@PRRX1!0.84!5.93!PRRX1;;chr7:27192185..27192209,-!p1@HOXA3!0.84!5.93!HOXA3;;chr10:31607702..31607755,+!p3@ZEB1!0.82!6.59!ZEB1;;chr5:158527253..158527264,-!p10@EBF1!0.82!5.60!EBF1;;chr8:49833948..49833973,-!p2@SNAI2!0.81!37.21!SNAI2;;chr7:28725740..28725778,+!p1@CREB5!0.80!52.03!CREB5;;chr7:42276787..42276815,-!p1@GLI3!0.80!15.15!GLI3;;chr16:54320675..54320715,-!p1@IRX3!0.80!12.18!IRX3;;chr8:99956662..99956684,+!p1@OSR2!0.80!8.56!OSR2;;chr18:22932004..22932021,-!p2@ZNF521!0.80!5.27!ZNF521;;chr19:13106214..13106382,+!p1@NFIX!0.79!131.72!NFIX;;chr3:157823517..157823562,-!p1@SHOX2!0.79!5.60!SHOX2;;chr1:158969752..158969780,+!p6@IFI16!0.78!9.22!IFI16;;chr16:79634581..79634592,-!p4@MAF!0.77!4.94!MAF;;chr8:93074803..93074845,-!p1@RUNX1T1!0.77!4.94!RUNX1T1;;chr3:71007344..71007348,-!p6@FOXP1!0.75!20.42!FOXP1;;chr4:26322673..26322684,+!p11@RBPJ!0.75!4.61!RBPJ;;chr5:174151612..174151633,+!p2@MSX2!0.75!4.61!MSX2;;chr7:15725757..15725828,-!p5@MEOX2!0.75!4.61!MEOX2;;chr7:27196267..27196311,-!p1@HOXA7!0.75!4.61!HOXA7;;chr7:28452130..28452154,+!p10@CREB5!0.75!4.61!CREB5;;chr10:131762410..131762436,-!p2@EBF3!0.75!4.61!EBF3;;chr8:49833978..49833996,-!p1@SNAI2!0.74!102.74!SNAI2;;chr7:28448995..28449011,+!p4@CREB5!0.74!6.59!CREB5;;chr2:8822176..8822196,+!p1@ID2!0.73!698.11!ID2;;chr16:54320158..54320200,-!p5@IRX3!0.73!6.59!IRX3;;chr19:50435736..50435781,+!p3@ATF5!0.73!6.26!ATF5;;chr1:23885981..23886002,-!p1@ID3!0.72!848.59!ID3;;chr8:48650715..48650735,-!p1@CEBPD!0.72!611.50!CEBPD;;chr17:46126136..46126152,+!p1@NFE2L1!0.72!247.63!NFE2L1;;chr15:67458491..67458505,+!p18@SMAD3!0.72!4.28!SMAD3;;chr17:46132044..46132080,+!p4@NFE2L1!0.72!4.28!NFE2L1;;chr1:44513995..44514031,+!p1@KLF17!0.72!4.28!KLF17;;chr11:125034640..125034655,+!p1@PKNOX2!0.72!4.28!PKNOX2;;chr2:119605214..119605230,-!p1@EN1!0.72!4.28!EN1;;chr17:1959369..1959388,+!p2@HIC1!0.71!11.85!HIC1;;chr1:23696308..23696339,-!p2@ZNF436!0.71!9.55!ZNF436;;chr2:145277882..145277967,-!p3@ZEB2!0.71!7.57!ZEB2;;chr9:110250697..110250738,-!p2@KLF4!0.71!4.94!KLF4;;chr10:114710244..114710257,+!p3@TCF7L2!0.70!11.85!TCF7L2;;chr15:66994561..66994597,+!p2@SMAD6!0.70!10.54!SMAD6;;chr8:72756063..72756125,-!p1@MSC!0.70!8.89!MSC;;chr11:706938..707008,-!p3@DEAF1!0.70!5.27!DEAF1;;chr2:85980919..85980942,+!p4@ATOH8!0.70!4.28!ATOH8;;chr6:144329384..144329405,-!p1@PLAGL1!0.69!51.37!PLAGL1;;chr9:4300050..4300118,-!p1@GLIS3!0.69!28.65!GLIS3;;chr4:26323764..26323821,+!p15@RBPJ!0.69!3.95!RBPJ;;chr1:170632439..170632465,+!p11@PRRX1!0.69!3.95!PRRX1;;chr1:170633194..170633205,+!p18@PRRX1!0.69!3.95!PRRX1;;chr6:1612300..1612324,+!p3@FOXC1!0.69!3.95!FOXC1;;chr8:72756380..72756427,-!p8@MSC!0.69!3.95!MSC;;chr15:66995062..66995065,+!p8@SMAD6!0.69!3.95!SMAD6;;chr10:77161504..77161530,-!p1@ZNF503!0.68!58.61!ZNF503;;chr7:17338266..17338282,+!p1@AHR!0.68!46.76!AHR;;chr3:69788576..69788648,+!p1@MITF!0.68!23.05!MITF;;chr19:45504688..45504782,+!p1@RELB!0.67!25.69!RELB;;chr18:19749386..19749404,+!p2@GATA6!0.67!5.60!GATA6;;chr9:16870659..16870675,-!p2@BNC2!0.67!4.61!BNC2;;chr4:38665883..38665922,+!p3@KLF3!0.66!15.15!KLF3;;chr1:158979872..158979898,+!p3@IFI16!0.66!12.51!IFI16;;chr10:63809090..63809097,+!p7@ARID5B!0.66!5.27!ARID5B;;chr19:13136130..13136165,+!p6@NFIX!0.66!4.94!NFIX;;chr3:71179785..71179810,-!p23@FOXP1!0.66!3.95!FOXP1;;chr6:1612248..1612281,+!p2@FOXC1!0.66!3.95!FOXC1;;chr7:15726243..15726293,-!p2@MEOX2!0.66!3.62!MEOX2;;chr10:114886551..114886601,+!p11@TCF7L2!0.66!3.62!TCF7L2;;chr12:53625846..53625861,-!p6@RARG!0.66!3.62!RARG;;chr14:37131058..37131139,+!p1@PAX9!0.66!3.62!PAX9;;chr17:38821373..38821440,-!p1@KRT222,p2@SMARCE1!0.66!3.62!SMARCE1;;chr1:170633021..170633028,+!p27@PRRX1!0.66!3.62!PRRX1;;chrY:2803415..2803468,+!p1@ZFY!0.66!3.62!ZFY;;chr6:19837592..19837621,+!p1@ID4!0.64!24.04!ID4;;chr5:321810..321877,+!p1@AHRR!0.64!12.18!AHRR;;chr15:66994663..66994680,+!p1@SMAD6!0.64!8.89!SMAD6;;chr2:28618532..28618610,+!p4@FOSL2!0.64!6.26!FOSL2;;chr6:1389789..1389821,+!p1@FOXF2!0.64!4.94!FOXF2;;chr14:61116168..61116180,-!p2@SIX1!0.64!3.95!SIX1;;chr3:178789522..178789564,-!p2@ZMAT3!0.63!27.99!ZMAT3;;chr9:102584262..102584276,+!p1@NR4A3!0.63!8.23!NR4A3;;chr17:15689487..15689505,+!p@chr17:15689487..15689505,+!0.63!5.93!MEIS3P1;;chr19:13136241..13136258,+!p7@NFIX!0.63!4.61!NFIX;;chr14:95236440..95236465,-!p1@GSC!0.63!3.29!GSC;;chr7:27205106..27205134,-!p2@HOXA9!0.63!3.29!HOXA9;;chr7:27205136..27205164,-!p1@HOXA9!0.63!3.29!HOXA9;;chr8:77593750..77593757,+!p3@ZFHX4!0.63!3.29!ZFHX4;;chr10:63853479..63853496,+!p21@ARID5B!0.63!3.29!ARID5B;;chr12:54380404..54380433,+!p3@HOXC10!0.63!3.29!HOXC10;;chr19:56154958..56155027,+!p1@ZNF581!0.62!124.47!ZNF581;;chr22:38598086..38598105,+!p1@MAFF!0.62!39.84!MAFF;;chr6:144289132..144289134,-!p3@PLAGL1!0.62!8.23!PLAGL1;;chr18:3449720..3449749,+!p2@TGIF1!0.62!7.57!TGIF1;;chr16:54964740..54964789,+!p1@IRX5!0.62!4.94!IRX5;;chr3:21792585..21792625,-!p2@ZNF385D!0.62!3.62!ZNF385D;;chr3:71114066..71114114,-!p1@FOXP1!0.61!76.40!FOXP1;;chr17:1958388..1958404,+!p1@HIC1!0.61!23.38!HIC1;;chr11:65687362..65687436,+!p3@DRAP1!0.61!16.46!DRAP1;;chr3:71007886..71007887,-!p8@FOXP1!0.61!11.53!FOXP1;;chr15:67358163..67358192,+!p1@SMAD3!0.60!84.30!SMAD3;;chr4:4861385..4861398,+!p1@MSX1!0.60!10.21!MSX1;;chr2:45236579..45236596,-!p2@SIX2!0.60!2.96!SIX2;;chr6:85474198..85474212,-!p3@TBX18!0.60!2.96!TBX18;;chr16:67198633..67198671,+!p1@HSF4!0.60!2.96!HSF4;;chr10:63816978..63816993,+!p12@ARID5B!0.60!2.96!ARID5B;;chr12:54379029..54379057,+!p2@HOXC10!0.60!2.96!HOXC10;;chr12:54394309..54394336,+!p2@HOXC9!0.60!2.96!HOXC9;;chr11:65686732..6568675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|expression_enrichment_score=chr1:170632285..170632309,+!p1@PRRX1!1.82!73.10!PRRX1;;chr2:19558373..19558392,-!p1@OSR1!1.75!146.87!OSR1;;chr5:158526917..158526932,-!p1@EBF1!1.69!114.92!EBF1;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.67!45.77!HOXC5;;chr9:132427972..132428056,+!p1@PRRX2!1.64!54.99!PRRX2;;chr9:132427883..132427951,+!p2@PRRX2!1.64!42.48!PRRX2;;chr6:85474299..85474324,-!p1@TBX18!1.61!70.14!TBX18;;chr10:131762504..131762555,-!p1@EBF3!1.47!28.65!EBF3;;chr8:25902876..25902936,-!p1@EBF2!1.32!20.09!EBF2;;chr5:158527104..158527135,-!p4@EBF1!1.32!19.76!EBF1;;chr2:239756671..239756732,+!p1@TWIST2!1.31!61.58!TWIST2;;chr7:19157248..19157268,-!p1@TWIST1!1.30!52.03!TWIST1;;chr17:48072574..48072597,-!p1@DLX3!1.30!19.10!DLX3;;chr1:170632477..170632506,+!p6@PRRX1!1.28!18.11!PRRX1;;chr8:72756667..72756736,-!p2@MSC!1.26!26.67!MSC;;chr12:53614115..53614154,-!p1@RARG!1.23!83.97!RARG;;chr14:61116183..61116208,-!p1@SIX1!1.23!59.60!SIX1;;chr20:51588873..51588953,+!p1@TSHZ2!1.23!21.07!TSHZ2;;chr19:13134772..13134822,+!p2@NFIX!1.22!22.72!NFIX;;chr8:72756637..72756664,-!p3@MSC!1.22!17.78!MSC;;chr7:44143925..44143970,+!p1@AEBP1!1.21!331.93!AEBP1;;chr16:54320617..54320643,-!p3@IRX3!1.19!18.44!IRX3;;chr2:239756739..239756755,+!p2@TWIST2!1.17!23.71!TWIST2;;chr1:170633348..170633399,+!p2@PRRX1!1.17!18.77!PRRX1;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!1.16!13.50!HOXC5;;chr16:79634624..79634642,-!p1@MAF!1.15!51.04!MAF;;chr10:63809013..63809041,+!p3@ARID5B!1.14!71.13!ARID5B;;chr1:170632959..170632987,+!p4@PRRX1!1.14!14.16!PRRX1;;chr10:119303078..119303169,+!p2@EMX2!1.12!12.18!EMX2;;chr7:19157043..19157088,-!p2@TWIST1!1.10!29.31!TWIST1;;chr7:28448965..28448994,+!p2@CREB5!1.07!38.20!CREB5;;chr17:26697276..26697303,-!p2@SEBOX,p2@VTN!1.07!10.87!SEBOX;;chr1:170632137..170632172,+!p10@PRRX1!1.05!10.21!PRRX1;;chr12:54378923..54378966,+!p1@HOXC10!1.04!9.88!HOXC10;;chr16:79633894..79633954,-!p3@MAF!1.02!18.44!MAF;;chr16:54320646..54320672,-!p2@IRX3!1.02!14.49!IRX3;;chr2:45236540..45236577,-!p1@SIX2!1.02!9.55!SIX2;;chr5:158527139..158527161,-!p5@EBF1!1.01!9.22!EBF1;;chr11:46299199..46299233,+!p1@CREB3L1!1.00!47.42!CREB3L1;;chr5:134369905..134369972,-!p1@PITX1!1.00!13.83!PITX1;;chr12:54410948..54410992,+!p3@HOXC5!1.00!8.89!HOXC5;;chrY:21906594..21906622,-!p1@KDM5D!1.00!8.89!KDM5D;;chr19:50432453..50432468,+!p1@ATF5!0.99!507.11!ATF5;;chr10:63853436..63853442,+!p4@ARID5B!0.98!47.42!ARID5B;;chr17:26697304..26697335,-!p1@SEBOX,p1@VTN!0.98!8.56!SEBOX;;chr2:176994408..176994492,+!p1@HOXD8!0.98!8.56!HOXD8;;chr11:46299539..46299620,+!p2@CREB3L1!0.97!14.49!CREB3L1;;chr8:72756267..72756296,-!p4@MSC!0.97!12.51!MSC;;chr8:72756213..72756243,-!p5@MSC!0.97!10.87!MSC;;chr7:15726296..15726315,-!p1@MEOX2!0.97!8.23!MEOX2;;chr12:54393880..54393962,+!p1@HOXC9!0.97!8.23!HOXC9;;chr12:52445218..52445237,+!p1@NR4A1!0.96!106.36!NR4A1;;chr16:79634595..79634620,-!p2@MAF!0.96!15.15!MAF;;chr18:19749541..19749557,+!p1@GATA6!0.95!25.36!GATA6;;chr1:170632723..170632739,+!p8@PRRX1!0.95!7.90!PRRX1;;chr21:36260773..36260804,-!p7@RUNX1!0.93!10.21!RUNX1;;chr10:63851669..63851682,+!p10@ARID5B!0.93!8.23!ARID5B;;chr1:170632250..170632277,+!p7@PRRX1!0.93!7.57!PRRX1;;chr1:170633058..170633084,+!p5@PRRX1!0.93!7.57!PRRX1;;chr15:67430351..67430366,+!p10@SMAD3!0.93!7.57!SMAD3;;chr10:63809106..63809127,+!p1@ARID5B!0.92!102.08!ARID5B;;chr16:4366053..4366076,+!p@chr16:4366053..4366076,+!0.92!76.73!GLIS2;;chr12:54772960..54773015,-!p3@ZNF385A!0.92!36.55!ZNF385A;;chr10:63809077..63809089,+!p5@ARID5B!0.92!16.46!ARID5B;;chr6:1610293..1610310,+!p1@FOXC1!0.92!12.51!FOXC1;;chr1:170633262..170633285,+!p3@PRRX1!0.91!8.23!PRRX1;;chr14:24837368..24837401,+!p1@NFATC4!0.90!16.79!NFATC4;;chr1:170632762..170632786,+!p13@PRRX1!0.90!6.92!PRRX1;;chr20:51589402..51589423,+!p6@TSHZ2!0.90!6.92!TSHZ2;;chr7:27213893..27213954,-!p1@HOXA10!0.90!6.92!HOXA10;;chr7:44143997..44144008,+!p3@AEBP1!0.88!8.56!AEBP1;;chr14:75894714..75894733,+!p1@JDP2!0.87!192.64!JDP2;;chr9:110252035..110252057,-!p1@KLF4!0.87!109.33!KLF4;;chr5:174151553..174151610,+!p1@MSX2!0.87!10.87!MSX2;;chr4:26322267..26322334,+!p3@RBPJ!0.86!15.81!RBPJ;;chr7:44143978..44143989,+!p2@AEBP1!0.86!11.85!AEBP1;;chr12:54402745..54402788,+!p1@HOXC8!0.86!6.26!HOXC8;;chr1:170632683..170632696,+!p12@PRRX1!0.86!6.26!PRRX1;;chr20:51589133..51589159,+!p2@TSHZ2!0.86!6.26!TSHZ2;;chr18:22932080..22932170,-!p1@ZNF521!0.84!26.67!ZNF521;;chr12:53625966..53626012,-!p2@RARG!0.84!16.46!RARG;;chr1:170632115..170632136,+!p9@PRRX1!0.84!5.93!PRRX1;;chr7:27192185..27192209,-!p1@HOXA3!0.84!5.93!HOXA3;;chr10:31607702..31607755,+!p3@ZEB1!0.82!6.59!ZEB1;;chr5:158527253..158527264,-!p10@EBF1!0.82!5.60!EBF1;;chr8:49833948..49833973,-!p2@SNAI2!0.81!37.21!SNAI2;;chr7:28725740..28725778,+!p1@CREB5!0.80!52.03!CREB5;;chr7:42276787..42276815,-!p1@GLI3!0.80!15.15!GLI3;;chr16:54320675..54320715,-!p1@IRX3!0.80!12.18!IRX3;;chr8:99956662..99956684,+!p1@OSR2!0.80!8.56!OSR2;;chr18:22932004..22932021,-!p2@ZNF521!0.80!5.27!ZNF521;;chr19:13106214..13106382,+!p1@NFIX!0.79!131.72!NFIX;;chr3:157823517..157823562,-!p1@SHOX2!0.79!5.60!SHOX2;;chr1:158969752..158969780,+!p6@IFI16!0.78!9.22!IFI16;;chr16:79634581..79634592,-!p4@MAF!0.77!4.94!MAF;;chr8:93074803..93074845,-!p1@RUNX1T1!0.77!4.94!RUNX1T1;;chr3:71007344..71007348,-!p6@FOXP1!0.75!20.42!FOXP1;;chr4:26322673..26322684,+!p11@RBPJ!0.75!4.61!RBPJ;;chr5:174151612..174151633,+!p2@MSX2!0.75!4.61!MSX2;;chr7:15725757..15725828,-!p5@MEOX2!0.75!4.61!MEOX2;;chr7:27196267..27196311,-!p1@HOXA7!0.75!4.61!HOXA7;;chr7:28452130..28452154,+!p10@CREB5!0.75!4.61!CREB5;;chr10:131762410..131762436,-!p2@EBF3!0.75!4.61!EBF3;;chr8:49833978..49833996,-!p1@SNAI2!0.74!102.74!SNAI2;;chr7:28448995..28449011,+!p4@CREB5!0.74!6.59!CREB5;;chr2:8822176..8822196,+!p1@ID2!0.73!698.11!ID2;;chr16:54320158..54320200,-!p5@IRX3!0.73!6.59!IRX3;;chr19:50435736..50435781,+!p3@ATF5!0.73!6.26!ATF5;;chr1:23885981..23886002,-!p1@ID3!0.72!848.59!ID3;;chr8:48650715..48650735,-!p1@CEBPD!0.72!611.50!CEBPD;;chr17:46126136..46126152,+!p1@NFE2L1!0.72!247.63!NFE2L1;;chr15:67458491..67458505,+!p18@SMAD3!0.72!4.28!SMAD3;;chr17:46132044..46132080,+!p4@NFE2L1!0.72!4.28!NFE2L1;;chr1:44513995..44514031,+!p1@KLF17!0.72!4.28!KLF17;;chr11:125034640..125034655,+!p1@PKNOX2!0.72!4.28!PKNOX2;;chr2:119605214..119605230,-!p1@EN1!0.72!4.28!EN1;;chr17:1959369..1959388,+!p2@HIC1!0.71!11.85!HIC1;;chr1:23696308..23696339,-!p2@ZNF436!0.71!9.55!ZNF436;;chr2:145277882..145277967,-!p3@ZEB2!0.71!7.57!ZEB2;;chr9:110250697..110250738,-!p2@KLF4!0.71!4.94!KLF4;;chr10:114710244..114710257,+!p3@TCF7L2!0.70!11.85!TCF7L2;;chr15:66994561..66994597,+!p2@SMAD6!0.70!10.54!SMAD6;;chr8:72756063..72756125,-!p1@MSC!0.70!8.89!MSC;;chr11:706938..707008,-!p3@DEAF1!0.70!5.27!DEAF1;;chr2:85980919..85980942,+!p4@ATOH8!0.70!4.28!ATOH8;;chr6:144329384..144329405,-!p1@PLAGL1!0.69!51.37!PLAGL1;;chr9:4300050..4300118,-!p1@GLIS3!0.69!28.65!GLIS3;;chr4:26323764..26323821,+!p15@RBPJ!0.69!3.95!RBPJ;;chr1:170632439..170632465,+!p11@PRRX1!0.69!3.95!PRRX1;;chr1:170633194..170633205,+!p18@PRRX1!0.69!3.95!PRRX1;;chr6:1612300..1612324,+!p3@FOXC1!0.69!3.95!FOXC1;;chr8:72756380..72756427,-!p8@MSC!0.69!3.95!MSC;;chr15:66995062..66995065,+!p8@SMAD6!0.69!3.95!SMAD6;;chr10:77161504..77161530,-!p1@ZNF503!0.68!58.61!ZNF503;;chr7:17338266..17338282,+!p1@AHR!0.68!46.76!AHR;;chr3:69788576..69788648,+!p1@MITF!0.68!23.05!MITF;;chr19:45504688..45504782,+!p1@RELB!0.67!25.69!RELB;;chr18:19749386..19749404,+!p2@GATA6!0.67!5.60!GATA6;;chr9:16870659..16870675,-!p2@BNC2!0.67!4.61!BNC2;;chr4:38665883..38665922,+!p3@KLF3!0.66!15.15!KLF3;;chr1:158979872..158979898,+!p3@IFI16!0.66!12.51!IFI16;;chr10:63809090..63809097,+!p7@ARID5B!0.66!5.27!ARID5B;;chr19:13136130..13136165,+!p6@NFIX!0.66!4.94!NFIX;;chr3:71179785..71179810,-!p23@FOXP1!0.66!3.95!FOXP1;;chr6:1612248..1612281,+!p2@FOXC1!0.66!3.95!FOXC1;;chr7:15726243..15726293,-!p2@MEOX2!0.66!3.62!MEOX2;;chr10:114886551..114886601,+!p11@TCF7L2!0.66!3.62!TCF7L2;;chr12:53625846..53625861,-!p6@RARG!0.66!3.62!RARG;;chr14:37131058..37131139,+!p1@PAX9!0.66!3.62!PAX9;;chr17:38821373..38821440,-!p1@KRT222,p2@SMARCE1!0.66!3.62!SMARCE1;;chr1:170633021..170633028,+!p27@PRRX1!0.66!3.62!PRRX1;;chrY:2803415..2803468,+!p1@ZFY!0.66!3.62!ZFY;;chr6:19837592..19837621,+!p1@ID4!0.64!24.04!ID4;;chr5:321810..321877,+!p1@AHRR!0.64!12.18!AHRR;;chr15:66994663..66994680,+!p1@SMAD6!0.64!8.89!SMAD6;;chr2:28618532..28618610,+!p4@FOSL2!0.64!6.26!FOSL2;;chr6:1389789..1389821,+!p1@FOXF2!0.64!4.94!FOXF2;;chr14:61116168..61116180,-!p2@SIX1!0.64!3.95!SIX1;;chr3:178789522..178789564,-!p2@ZMAT3!0.63!27.99!ZMAT3;;chr9:102584262..102584276,+!p1@NR4A3!0.63!8.23!NR4A3;;chr17:15689487..15689505,+!p@chr17:15689487..15689505,+!0.63!5.93!MEIS3P1;;chr19:13136241..13136258,+!p7@NFIX!0.63!4.61!NFIX;;chr14:95236440..95236465,-!p1@GSC!0.63!3.29!GSC;;chr7:27205106..27205134,-!p2@HOXA9!0.63!3.29!HOXA9;;chr7:27205136..27205164,-!p1@HOXA9!0.63!3.29!HOXA9;;chr8:77593750..77593757,+!p3@ZFHX4!0.63!3.29!ZFHX4;;chr10:63853479..63853496,+!p21@ARID5B!0.63!3.29!ARID5B;;chr12:54380404..54380433,+!p3@HOXC10!0.63!3.29!HOXC10;;chr19:56154958..56155027,+!p1@ZNF581!0.62!124.47!ZNF581;;chr22:38598086..38598105,+!p1@MAFF!0.62!39.84!MAFF;;chr6:144289132..144289134,-!p3@PLAGL1!0.62!8.23!PLAGL1;;chr18:3449720..3449749,+!p2@TGIF1!0.62!7.57!TGIF1;;chr16:54964740..54964789,+!p1@IRX5!0.62!4.94!IRX5;;chr3:21792585..21792625,-!p2@ZNF385D!0.62!3.62!ZNF385D;;chr3:71114066..71114114,-!p1@FOXP1!0.61!76.40!FOXP1;;chr17:1958388..1958404,+!p1@HIC1!0.61!23.38!HIC1;;chr11:65687362..65687436,+!p3@DRAP1!0.61!16.46!DRAP1;;chr3:71007886..71007887,-!p8@FOXP1!0.61!11.53!FOXP1;;chr15:67358163..67358192,+!p1@SMAD3!0.60!84.30!SMAD3;;chr4:4861385..4861398,+!p1@MSX1!0.60!10.21!MSX1;;chr2:45236579..45236596,-!p2@SIX2!0.60!2.96!SIX2;;chr6:85474198..85474212,-!p3@TBX18!0.60!2.96!TBX18;;chr16:67198633..67198671,+!p1@HSF4!0.60!2.96!HSF4;;chr10:63816978..63816993,+!p12@ARID5B!0.60!2.96!ARID5B;;chr12:54379029..54379057,+!p2@HOXC10!0.60!2.96!HOXC10;;chr12:54394309..54394336,+!p2@HOXC9!0.60!2.96!HOXC9;;chr11:65686732..6568675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|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000151;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000153;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000213;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000214;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000327;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000499;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002078;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000982;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0006914
|ffid_belonging_in_development=CL:0000134,CL:0000222
|ffid_belonging_in_development=CL:0000134,CL:0000222
|fonse_cell_line=
|fonse_cell_line=
Line 39: Line 44:
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Synoviocyte%252c%2520donor3.CNhs12050.11440-118H9.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Synoviocyte%252c%2520donor3.CNhs12050.11440-118H9.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Synoviocyte%252c%2520donor3.CNhs12050.11440-118H9.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Synoviocyte%252c%2520donor3.CNhs12050.11440-118H9.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Synoviocyte%252c%2520donor3.CNhs12050.11440-118H9.hg38.nobarcode.ctss.bed.gz
|id=FF:11440-118H9
|id=FF:11440-118H9
|is_a=EFO:0002091;;FF:0000187
|is_a=EFO:0002091;;FF:0000187
|is_obsolete=
|is_obsolete=
|library_ids=CNhs12050
|library_id=CNhs12050
|library_id_phase_based=2:CNhs12050
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11440
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10004.GGCTAC.11440
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11440
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10004.GGCTAC.11440
|name=Synoviocyte, donor3
|name=Synoviocyte, donor3
|namespace=FANTOM5
|namespace=FANTOM5
Line 48: Line 65:
|profile_cagescan=,,,
|profile_cagescan=,,,
|profile_hcage=CNhs12050,LSID838,release011,COMPLETED
|profile_hcage=CNhs12050,LSID838,release011,COMPLETED
|profile_rnaseq=,,,
|profile_rnaseq=
|profile_srnaseq=SRhi10004,,,
|profile_srnaseq=SRhi10004,,,
|refex=http://refex.dbcls.jp/genelist.php?lang
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Line 64: Line 82:
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|sample_category=primary cells
Line 87: Line 106:
|top_motifs=ALX4:2.13747548973;UFEwm:1.91376713201;EVI1:1.78011899723;KLF4:1.71235176243;ESR1:1.54583220234;FOXL1:1.5211594062;EN1,2:1.45136973316;SPZ1:1.340246889;MYBL2:1.24327680037;RXRA_VDR{dimer}:1.24067846405;NKX2-1,4:1.21573497113;ZNF238:1.20687822612;TAL1_TCF{3,4,12}:1.19125020724;GLI1..3:1.18814944437;RREB1:1.14779986723;RXR{A,B,G}:1.13518446953;FOXO1,3,4:1.12595273942;ATF6:1.1047404012;TEAD1:1.0910212661;PRDM1:1.05067212263;NKX3-1:1.04594723405;MTF1:1.0346445683;GZF1:1.03182697198;TFCP2:0.963025688891;IKZF1:0.950414783843;TLX1..3_NFIC{dimer}:0.927162964604;HSF1,2:0.900396336266;TFAP4:0.888892518147;HES1:0.869849861866;SMAD1..7,9:0.868158378846;GCM1,2:0.860655813445;PAX1,9:0.837016634299;ZNF423:0.823981539887;TEF:0.801114019548;GFI1B:0.799076230606;HOX{A4,D4}:0.776266300832;TOPORS:0.722000937329;ZIC1..3:0.713060977208;STAT2,4,6:0.693875233345;EBF1:0.674817676235;NFE2L1:0.6435839043;XBP1:0.636038396501;ESRRA:0.635347634343;NR6A1:0.620966275077;GTF2I:0.589333579744;NFATC1..3:0.586099599156;XCPE1{core}:0.583262401537;TFAP2B:0.577615824056;HMX1:0.574750884955;NKX2-2,8:0.560372551758;GATA4:0.560180918699;TP53:0.559471313776;IRF1,2:0.559432704802;HOX{A5,B5}:0.535137041008;CDX1,2,4:0.527633051787;NR1H4:0.519503125237;LHX3,4:0.493111609223;HAND1,2:0.483908056471;VSX1,2:0.482144836218;PAX5:0.459077453505;ZNF148:0.457350016944;SRF:0.399283781889;BPTF:0.375304583035;GTF2A1,2:0.360414070742;HOX{A6,A7,B6,B7}:0.34892213818;HLF:0.343369970173;TBP:0.342022442348;HIC1:0.335384205501;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.332233360196;MAFB:0.331712699041;TFAP2{A,C}:0.326537493609;FOXD3:0.308342486114;NR3C1:0.306808460552;AIRE:0.289431193777;MAZ:0.286056519851;NKX3-2:0.268399841549;ZNF384:0.234169707523;FOXM1:0.206757503518;AR:0.183658464655;TLX2:0.178135347984;YY1:0.172060713029;MYFfamily:0.150970030783;FOXP3:0.102455306971;PATZ1:0.0909669357526;ZBTB6:0.0900691478164;HIF1A:0.0789757641613;PPARG:0.0407290035467;CDC5L:0.0337622744275;RFX1:0.0260713809139;MED-1{core}:0.00874138812065;POU5F1:0.000351916471897;FOXP1:-0.00596461475085;MTE{core}:-0.0518622323812;TBX4,5:-0.0610355220875;NFKB1_REL_RELA:-0.0617013585129;PAX4:-0.0653631908811;EP300:-0.0680929289704;MZF1:-0.0778098600711;POU6F1:-0.0812697464943;MEF2{A,B,C,D}:-0.0853787737746;SOX17:-0.108742338472;REST:-0.110447979674;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.119964013603;NANOG{mouse}:-0.143707704729;ARID5B:-0.153389125932;CEBPA,B_DDIT3:-0.159189794884;NHLH1,2:-0.178796870816;FOX{I1,J2}:-0.194683208243;EGR1..3:-0.200028743196;HNF1A:-0.202687518684;AHR_ARNT_ARNT2:-0.210026543149;HNF4A_NR2F1,2:-0.25801304901;NFE2L2:-0.275026961704;STAT1,3:-0.283404790917;POU3F1..4:-0.306635445109;ONECUT1,2:-0.322911988088;FOS_FOS{B,L1}_JUN{B,D}:-0.334205372603;SP1:-0.338207416;RUNX1..3:-0.344204820038;ATF2:-0.347752175377;NR5A1,2:-0.368667317561;FOX{D1,D2}:-0.39434017846;bHLH_family:-0.397822565329;NFIL3:-0.400010719859;HMGA1,2:-0.40117899506;ZBTB16:-0.422183421976;DBP:-0.435450106657;ALX1:-0.443338324632;PRRX1,2:-0.444938192915;T:-0.449434475016;BREu{core}:-0.458846357253;FOSL2:-0.462186777692;BACH2:-0.482637105641;NFIX:-0.492747044991;LMO2:-0.506197310374;POU1F1:-0.509725373613;NRF1:-0.515353509076;ELK1,4_GABP{A,B1}:-0.517211530649;SOX5:-0.519748248275;NFE2:-0.540524600922;ZFP161:-0.559019497289;CREB1:-0.593509326484;HOXA9_MEIS1:-0.608978653294;SPI1:-0.618055970626;DMAP1_NCOR{1,2}_SMARC:-0.63958513011;PAX3,7:-0.645979921472;MYB:-0.652526142273;NKX6-1,2:-0.66820256788;ATF4:-0.67127899821;TFDP1:-0.682872500017;SREBF1,2:-0.689178204527;IRF7:-0.704837993808;ZNF143:-0.704981274785;SNAI1..3:-0.71044747601;FOXQ1:-0.727396020294;ATF5_CREB3:-0.765556922106;PDX1:-0.791125425096;PITX1..3:-0.812043750425;PAX2:-0.855631953983;STAT5{A,B}:-0.864338893988;GFI1:-0.876962885805;FOXN1:-0.891498809943;ETS1,2:-0.892700084394;LEF1_TCF7_TCF7L1,2:-0.894478174123;SPIB:-0.898678377211;TGIF1:-0.899409096486;E2F1..5:-0.929876866062;RBPJ:-0.933327640011;PAX6:-0.935563235903;FOX{F1,F2,J1}:-0.980103149266;JUN:-0.98889605471;NKX2-3_NKX2-5:-1.00013287934;ELF1,2,4:-1.01420763396;HBP1_HMGB_SSRP1_UBTF:-1.01451956672;RFX2..5_RFXANK_RFXAP:-1.06259029197;ZEB1:-1.11748961914;FOXA2:-1.15282956276;RORA:-1.17791889727;CUX2:-1.20893572299;PBX1:-1.23163548643;ADNP_IRX_SIX_ZHX:-1.23699737781;IKZF2:-1.27953252672;GATA6:-1.31526673031;POU2F1..3:-1.32757947153;MYOD1:-1.3478018251;OCT4_SOX2{dimer}:-1.40333680134;SOX2:-1.60888234994;CRX:-1.67117250997;PAX8:-1.78220205528;NFY{A,B,C}:-1.78275164834;SOX{8,9,10}:-1.81142946051;NANOG:-2.64815230851
|top_motifs=ALX4:2.13747548973;UFEwm:1.91376713201;EVI1:1.78011899723;KLF4:1.71235176243;ESR1:1.54583220234;FOXL1:1.5211594062;EN1,2:1.45136973316;SPZ1:1.340246889;MYBL2:1.24327680037;RXRA_VDR{dimer}:1.24067846405;NKX2-1,4:1.21573497113;ZNF238:1.20687822612;TAL1_TCF{3,4,12}:1.19125020724;GLI1..3:1.18814944437;RREB1:1.14779986723;RXR{A,B,G}:1.13518446953;FOXO1,3,4:1.12595273942;ATF6:1.1047404012;TEAD1:1.0910212661;PRDM1:1.05067212263;NKX3-1:1.04594723405;MTF1:1.0346445683;GZF1:1.03182697198;TFCP2:0.963025688891;IKZF1:0.950414783843;TLX1..3_NFIC{dimer}:0.927162964604;HSF1,2:0.900396336266;TFAP4:0.888892518147;HES1:0.869849861866;SMAD1..7,9:0.868158378846;GCM1,2:0.860655813445;PAX1,9:0.837016634299;ZNF423:0.823981539887;TEF:0.801114019548;GFI1B:0.799076230606;HOX{A4,D4}:0.776266300832;TOPORS:0.722000937329;ZIC1..3:0.713060977208;STAT2,4,6:0.693875233345;EBF1:0.674817676235;NFE2L1:0.6435839043;XBP1:0.636038396501;ESRRA:0.635347634343;NR6A1:0.620966275077;GTF2I:0.589333579744;NFATC1..3:0.586099599156;XCPE1{core}:0.583262401537;TFAP2B:0.577615824056;HMX1:0.574750884955;NKX2-2,8:0.560372551758;GATA4:0.560180918699;TP53:0.559471313776;IRF1,2:0.559432704802;HOX{A5,B5}:0.535137041008;CDX1,2,4:0.527633051787;NR1H4:0.519503125237;LHX3,4:0.493111609223;HAND1,2:0.483908056471;VSX1,2:0.482144836218;PAX5:0.459077453505;ZNF148:0.457350016944;SRF:0.399283781889;BPTF:0.375304583035;GTF2A1,2:0.360414070742;HOX{A6,A7,B6,B7}:0.34892213818;HLF:0.343369970173;TBP:0.342022442348;HIC1:0.335384205501;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.332233360196;MAFB:0.331712699041;TFAP2{A,C}:0.326537493609;FOXD3:0.308342486114;NR3C1:0.306808460552;AIRE:0.289431193777;MAZ:0.286056519851;NKX3-2:0.268399841549;ZNF384:0.234169707523;FOXM1:0.206757503518;AR:0.183658464655;TLX2:0.178135347984;YY1:0.172060713029;MYFfamily:0.150970030783;FOXP3:0.102455306971;PATZ1:0.0909669357526;ZBTB6:0.0900691478164;HIF1A:0.0789757641613;PPARG:0.0407290035467;CDC5L:0.0337622744275;RFX1:0.0260713809139;MED-1{core}:0.00874138812065;POU5F1:0.000351916471897;FOXP1:-0.00596461475085;MTE{core}:-0.0518622323812;TBX4,5:-0.0610355220875;NFKB1_REL_RELA:-0.0617013585129;PAX4:-0.0653631908811;EP300:-0.0680929289704;MZF1:-0.0778098600711;POU6F1:-0.0812697464943;MEF2{A,B,C,D}:-0.0853787737746;SOX17:-0.108742338472;REST:-0.110447979674;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.119964013603;NANOG{mouse}:-0.143707704729;ARID5B:-0.153389125932;CEBPA,B_DDIT3:-0.159189794884;NHLH1,2:-0.178796870816;FOX{I1,J2}:-0.194683208243;EGR1..3:-0.200028743196;HNF1A:-0.202687518684;AHR_ARNT_ARNT2:-0.210026543149;HNF4A_NR2F1,2:-0.25801304901;NFE2L2:-0.275026961704;STAT1,3:-0.283404790917;POU3F1..4:-0.306635445109;ONECUT1,2:-0.322911988088;FOS_FOS{B,L1}_JUN{B,D}:-0.334205372603;SP1:-0.338207416;RUNX1..3:-0.344204820038;ATF2:-0.347752175377;NR5A1,2:-0.368667317561;FOX{D1,D2}:-0.39434017846;bHLH_family:-0.397822565329;NFIL3:-0.400010719859;HMGA1,2:-0.40117899506;ZBTB16:-0.422183421976;DBP:-0.435450106657;ALX1:-0.443338324632;PRRX1,2:-0.444938192915;T:-0.449434475016;BREu{core}:-0.458846357253;FOSL2:-0.462186777692;BACH2:-0.482637105641;NFIX:-0.492747044991;LMO2:-0.506197310374;POU1F1:-0.509725373613;NRF1:-0.515353509076;ELK1,4_GABP{A,B1}:-0.517211530649;SOX5:-0.519748248275;NFE2:-0.540524600922;ZFP161:-0.559019497289;CREB1:-0.593509326484;HOXA9_MEIS1:-0.608978653294;SPI1:-0.618055970626;DMAP1_NCOR{1,2}_SMARC:-0.63958513011;PAX3,7:-0.645979921472;MYB:-0.652526142273;NKX6-1,2:-0.66820256788;ATF4:-0.67127899821;TFDP1:-0.682872500017;SREBF1,2:-0.689178204527;IRF7:-0.704837993808;ZNF143:-0.704981274785;SNAI1..3:-0.71044747601;FOXQ1:-0.727396020294;ATF5_CREB3:-0.765556922106;PDX1:-0.791125425096;PITX1..3:-0.812043750425;PAX2:-0.855631953983;STAT5{A,B}:-0.864338893988;GFI1:-0.876962885805;FOXN1:-0.891498809943;ETS1,2:-0.892700084394;LEF1_TCF7_TCF7L1,2:-0.894478174123;SPIB:-0.898678377211;TGIF1:-0.899409096486;E2F1..5:-0.929876866062;RBPJ:-0.933327640011;PAX6:-0.935563235903;FOX{F1,F2,J1}:-0.980103149266;JUN:-0.98889605471;NKX2-3_NKX2-5:-1.00013287934;ELF1,2,4:-1.01420763396;HBP1_HMGB_SSRP1_UBTF:-1.01451956672;RFX2..5_RFXANK_RFXAP:-1.06259029197;ZEB1:-1.11748961914;FOXA2:-1.15282956276;RORA:-1.17791889727;CUX2:-1.20893572299;PBX1:-1.23163548643;ADNP_IRX_SIX_ZHX:-1.23699737781;IKZF2:-1.27953252672;GATA6:-1.31526673031;POU2F1..3:-1.32757947153;MYOD1:-1.3478018251;OCT4_SOX2{dimer}:-1.40333680134;SOX2:-1.60888234994;CRX:-1.67117250997;PAX8:-1.78220205528;NFY{A,B,C}:-1.78275164834;SOX{8,9,10}:-1.81142946051;NANOG:-2.64815230851
|xref=
|xref=
}} {{DRAAccessionNumbers
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11440-118H9;search_select_hide=table117:FF:11440-118H9
|DRA_sample_Accession=CAGE@DRS008410
|accession_numbers=DRX008518;DRR009390;DRZ000815;DRZ002200;CAGE
|library_id=CNhs12050
}}
}}

Latest revision as of 18:01, 4 June 2020

Name:Synoviocyte, donor3
Species:Human (Homo sapiens)
Library ID:CNhs12050
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6, 7, 8, 9, 10
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuesynovium
dev stage61 years old adult
sexmale
age61
cell typesynovial cell
cell lineNA
companyCell Applications
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot number2540
catalog numberCA408-R10a
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005569
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs12050 CAGE DRX008518 DRR009390
Accession ID Hg19

Library idBAMCTSS
CNhs12050 DRZ000815 DRZ002200
Accession ID Hg38

Library idBAMCTSS
CNhs12050 DRZ012165 DRZ013550
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
sRNA-Seq  SAMD00005569
Library accession numbers

Library idMethodExp. accession idRun accession id
SRhi10004.GGCTAC sRNA-Seq DRX037041 DRR041407
Accession ID Hg19

Library idBAMCTSS
SRhi10004.GGCTAC DRZ007049


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.235
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.324
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.124
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.115
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.318
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140.124
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.56
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.0862
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0.423
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0.22
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.417
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0.298
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40.158
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0.948
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0.474
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.45
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0.723
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.167
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0.124
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0.665
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.474
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0.474
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.808
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.22
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.723
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0.0839
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.869
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12050

Jaspar motifP-value
MA0002.20.102
MA0003.10.22
MA0004.10.156
MA0006.10.329
MA0007.10.684
MA0009.10.803
MA0014.10.306
MA0017.10.355
MA0018.23.29475e-5
MA0019.10.999
MA0024.11.09187e-4
MA0025.10.00719
MA0027.10.916
MA0028.10.00437
MA0029.10.499
MA0030.10.0659
MA0031.10.465
MA0035.20.153
MA0038.15.06239e-4
MA0039.20.0329
MA0040.10.79
MA0041.10.935
MA0042.10.473
MA0043.14.06828e-4
MA0046.10.00348
MA0047.20.485
MA0048.10.143
MA0050.10.414
MA0051.10.344
MA0052.10.0857
MA0055.10.922
MA0057.10.29
MA0058.10.0749
MA0059.10.494
MA0060.15.20979e-19
MA0061.10.606
MA0062.21.29664e-9
MA0065.20.479
MA0066.10.986
MA0067.10.0317
MA0068.10.108
MA0069.10.197
MA0070.10.99
MA0071.10.337
MA0072.10.271
MA0073.10.885
MA0074.10.136
MA0076.12.50076e-4
MA0077.10.0463
MA0078.10.895
MA0079.20.78
MA0080.29.10965e-8
MA0081.10.00107
MA0083.10.273
MA0084.10.397
MA0087.10.239
MA0088.10.643
MA0090.10.00395
MA0091.10.143
MA0092.10.467
MA0093.10.101
MA0099.23.99725e-8
MA0100.10.075
MA0101.10.282
MA0102.20.858
MA0103.10.0412
MA0104.20.0594
MA0105.10.72
MA0106.10.16
MA0107.10.695
MA0108.20.956
MA0111.10.655
MA0112.20.00655
MA0113.10.53
MA0114.10.441
MA0115.10.768
MA0116.10.0148
MA0117.10.0988
MA0119.10.168
MA0122.10.66
MA0124.10.2
MA0125.10.0059
MA0131.10.254
MA0135.10.193
MA0136.14.55614e-11
MA0137.20.718
MA0138.20.203
MA0139.10.691
MA0140.10.104
MA0141.10.0254
MA0142.10.0116
MA0143.10.324
MA0144.10.769
MA0145.10.323
MA0146.10.143
MA0147.10.0938
MA0148.10.542
MA0149.10.545
MA0150.10.0243
MA0152.10.0474
MA0153.10.632
MA0154.10.211
MA0155.10.2
MA0156.16.62252e-13
MA0157.10.914
MA0159.10.0389
MA0160.10.976
MA0162.10.0282
MA0163.10.00412
MA0164.10.658
MA0258.10.208
MA0259.10.0706



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12050

Novel motifP-value
10.603
100.221
1000.6
1010.729
1020.0406
1030.44
1040.926
1050.0903
1060.457
1070.206
1080.111
1090.473
110.231
1100.205
1110.455
1120.293
1130.261
1140.119
1150.0344
1160.0108
1170.913
1180.48
1190.444
120.169
1200.746
1210.0505
1220.00742
1230.103
1240.395
1250.824
1260.498
1270.772
1280.174
1290.879
130.628
1300.205
1310.41
1320.0759
1330.179
1340.604
1350.676
1360.631
1370.318
1380.742
1390.125
140.633
1400.966
1410.973
1420.617
1430.76
1440.143
1450.368
1460.474
1470.183
1480.578
1490.00335
150.981
1500.477
1510.323
1520.0897
1530.651
1540.868
1550.877
1560.465
1570.91
1580.0719
1590.992
160.0302
1600.335
1610.977
1620.45
1630.859
1640.00896
1650.737
1660.103
1670.614
1680.177
1690.00518
170.248
180.252
190.00232
20.182
200.681
210.128
220.117
230.211
240.0602
250.389
260.3
270.191
280.23
290.138
30.356
300.377
310.6
322.172e-14
330.848
340.49
350.995
360.0617
370.128
380.911
390.172
40.374
400.559
410.381
420.812
430.343
440.21
450.821
460.384
470.915
480.665
490.72
50.643
500.388
510.662
520.692
530.433
540.545
550.216
560.729
570.903
580.492
590.0516
60.511
600.36
610.636
620.897
630.141
640.918
650.328
660.0113
670.801
680.15
690.869
70.291
700.116
710.341
720.814
730.0513
740.16
750.456
760.459
773.25053e-4
780.191
793.02658e-4
80.0526
800.0637
810.61
820.322
830.0241
840.372
850.0486
860.495
870.795
880.0833
890.0108
90.311
900.339
910.697
920.104
930.723
940.343
950.734
960.673
970.448
980.426
990.023



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs12050


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000151 (secretory cell)
0002320 (connective tissue cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000213 (lining cell)
0002078 (meso-epithelial cell)
0000499 (stromal cell)
0000153 (GAG secreting cell)
0000327 (extracellular matrix secreting cell)
0000447 (carbohydrate secreting cell)
0000215 (barrier cell)
0000255 (eukaryotic cell)
0000214 (synovial cell)

UBERON: Anatomy
0000468 (multi-cellular organism)
0000483 (epithelium)
0002384 (connective tissue)
0000479 (tissue)
0000064 (organ part)
0000062 (organ)
0004120 (mesoderm-derived structure)
0004457 (cavity lining)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0004923 (organ component layer)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0006914 (squamous epithelium)
0004905 (articulation)
0000486 (multilaminar epithelium)
0006915 (stratified squamous epithelium)
0007616 (layer of synovial tissue)
0000042 (serous membrane)
0000982 (skeletal joint)
0004458 (body cavity or lining)
0010317 (germ layer / neural crest derived structure)
0002217 (synovial joint)
0002018 (synovial membrane of synovial joint)
0002204 (musculoskeletal system)
0001434 (skeletal system)
0004770 (articular system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000187 (human synovial cell sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)
CL:0000222 (mesodermal cell)

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