FF:11304-117B8: Difference between revisions

Latest revision as of 16:31, 3 June 2020

Name:	Fibroblast - Periodontal Ligament, donor5 (PL30)
Species:	Human (Homo sapiens)
Library ID:	CNhs11953
Sample type:	primary cells
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5, 6, 7, 8
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	periodontal ligament
dev stage	40 years old adult
sex	male
age	40
cell type	fibroblast
cell line	NA
company	N/A
collaboration	Mitsuhiro Ohshima (Nihon University School of Dentistry)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	N/A
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005996

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs11953		CAGE		DRX008278		DRR009150

Accession ID Hg19

Library id		BAM		CTSS
CNhs11953		DRZ000575		DRZ001960

Accession ID Hg38

Library id		BAM		CTSS
CNhs11953		DRZ011925		DRZ013310

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.0356
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	0.0562
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0.953
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	-0.00272
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	-0.155
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.195
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0.641
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	0.326
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	0.343
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0.116
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0.0935
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0.0721
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0.208
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.054
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0.226
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0.283
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0.208
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0.404
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0.575
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0.906
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0.67
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11953

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.956
MA0003.1	MA0003.1	0.332
MA0004.1	MA0004.1	0.341
MA0006.1	MA0006.1	0.0689
MA0007.1	MA0007.1	0.509
MA0009.1	MA0009.1	0.615
MA0014.1	MA0014.1	0.845
MA0017.1	MA0017.1	0.992
MA0018.2	MA0018.2	1.20193e-5
MA0019.1	MA0019.1	0.97
MA0024.1	MA0024.1	0.0174
MA0025.1	MA0025.1	0.00109
MA0027.1	MA0027.1	0.97
MA0028.1	MA0028.1	0.251
MA0029.1	MA0029.1	0.419
MA0030.1	MA0030.1	0.00269
MA0031.1	MA0031.1	0.00306
MA0035.2	MA0035.2	0.00574
MA0038.1	MA0038.1	0.206
MA0039.2	MA0039.2	0.0116
MA0040.1	MA0040.1	0.267
MA0041.1	MA0041.1	0.78
MA0042.1	MA0042.1	0.615
MA0043.1	MA0043.1	1.64904e-4
MA0046.1	MA0046.1	0.263
MA0047.2	MA0047.2	0.125
MA0048.1	MA0048.1	0.0352
MA0050.1	MA0050.1	0.239
MA0051.1	MA0051.1	0.599
MA0052.1	MA0052.1	0.694
MA0055.1	MA0055.1	0.964
MA0057.1	MA0057.1	0.122
MA0058.1	MA0058.1	0.123
MA0059.1	MA0059.1	0.962
MA0060.1	MA0060.1	1.40203e-5
MA0061.1	MA0061.1	0.475
MA0062.2	MA0062.2	1.07904e-4
MA0065.2	MA0065.2	0.73
MA0066.1	MA0066.1	0.117
MA0067.1	MA0067.1	0.0103
MA0068.1	MA0068.1	0.533
MA0069.1	MA0069.1	0.0258
MA0070.1	MA0070.1	0.83
MA0071.1	MA0071.1	0.458
MA0072.1	MA0072.1	0.623
MA0073.1	MA0073.1	0.966
MA0074.1	MA0074.1	0.238
MA0076.1	MA0076.1	0.0722
MA0077.1	MA0077.1	0.444
MA0078.1	MA0078.1	0.607
MA0079.2	MA0079.2	0.798
MA0080.2	MA0080.2	1.5529e-8
MA0081.1	MA0081.1	0.0164
MA0083.1	MA0083.1	7.77384e-4
MA0084.1	MA0084.1	0.0612
MA0087.1	MA0087.1	0.696
MA0088.1	MA0088.1	0.475
MA0090.1	MA0090.1	0.00443
MA0091.1	MA0091.1	0.0502
MA0092.1	MA0092.1	0.0996
MA0093.1	MA0093.1	0.228
MA0099.2	MA0099.2	0.25
MA0100.1	MA0100.1	0.911
MA0101.1	MA0101.1	0.00527
MA0102.2	MA0102.2	0.0153
MA0103.1	MA0103.1	0.0602
MA0104.2	MA0104.2	0.0355
MA0105.1	MA0105.1	0.516
MA0106.1	MA0106.1	0.0188
MA0107.1	MA0107.1	0.00679
MA0108.2	MA0108.2	0.655
MA0111.1	MA0111.1	0.652
MA0112.2	MA0112.2	2.15874e-4
MA0113.1	MA0113.1	0.535
MA0114.1	MA0114.1	0.561
MA0115.1	MA0115.1	0.327
MA0116.1	MA0116.1	0.0724
MA0117.1	MA0117.1	0.528
MA0119.1	MA0119.1	0.0314
MA0122.1	MA0122.1	0.152
MA0124.1	MA0124.1	0.258
MA0125.1	MA0125.1	0.119
MA0131.1	MA0131.1	0.273
MA0135.1	MA0135.1	0.611
MA0136.1	MA0136.1	1.50477e-10
MA0137.2	MA0137.2	0.0452
MA0138.2	MA0138.2	0.418
MA0139.1	MA0139.1	0.755
MA0140.1	MA0140.1	0.0572
MA0141.1	MA0141.1	0.29
MA0142.1	MA0142.1	0.748
MA0143.1	MA0143.1	0.593
MA0144.1	MA0144.1	0.95
MA0145.1	MA0145.1	0.27
MA0146.1	MA0146.1	0.442
MA0147.1	MA0147.1	0.0508
MA0148.1	MA0148.1	0.341
MA0149.1	MA0149.1	0.109
MA0150.1	MA0150.1	0.308
MA0152.1	MA0152.1	0.159
MA0153.1	MA0153.1	0.416
MA0154.1	MA0154.1	0.201
MA0155.1	MA0155.1	0.296
MA0156.1	MA0156.1	3.9062e-7
MA0157.1	MA0157.1	0.15
MA0159.1	MA0159.1	0.902
MA0160.1	MA0160.1	0.404
MA0162.1	MA0162.1	0.0449
MA0163.1	MA0163.1	0.00137
MA0164.1	MA0164.1	0.643
MA0258.1	MA0258.1	0.0181
MA0259.1	MA0259.1	0.0836

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11953

Novel motif	Logo	P-value
1	1	0.434
10	10	0.179
100	100	0.793
101	101	0.397
102	102	0.199
103	103	0.451
104	104	0.462
105	105	0.328
106	106	0.0157
107	107	0.0302
108	108	0.288
109	109	0.187
11	11	0.231
110	110	0.433
111	111	0.816
112	112	0.141
113	113	0.0168
114	114	0.301
115	115	0.0214
116	116	0.0205
117	117	0.613
118	118	0.721
119	119	0.624
12	12	0.161
120	120	0.192
121	121	0.619
122	122	0.049
123	123	0.135
124	124	0.674
125	125	0.135
126	126	0.935
127	127	0.827
128	128	0.0372
129	129	0.87
13	13	0.923
130	130	0.86
131	131	0.813
132	132	0.537
133	133	0.549
134	134	0.169
135	135	0.648
136	136	0.265
137	137	0.319
138	138	0.624
139	139	0.909
14	14	0.531
140	140	0.425
141	141	0.269
142	142	0.842
143	143	0.642
144	144	0.74
145	145	0.399
146	146	0.906
147	147	0.125
148	148	0.983
149	149	0.047
15	15	0.714
150	150	0.153
151	151	0.634
152	152	0.00347
153	153	0.987
154	154	0.331
155	155	0.0188
156	156	0.884
157	157	0.153
158	158	0.00363
159	159	0.317
16	16	0.019
160	160	0.261
161	161	0.729
162	162	0.645
163	163	0.978
164	164	0.217
165	165	0.314
166	166	0.0345
167	167	0.744
168	168	0.966
169	169	0.0409
17	17	0.232
18	18	0.128
19	19	0.00416
2	2	0.316
20	20	0.545
21	21	0.0719
22	22	0.21
23	23	0.576
24	24	0.987
25	25	0.793
26	26	0.13
27	27	0.686
28	28	0.283
29	29	0.491
3	3	0.296
30	30	0.633
31	31	0.602
32	32	1.19574e-16
33	33	0.239
34	34	0.801
35	35	0.994
36	36	0.0645
37	37	0.0332
38	38	0.677
39	39	0.373
4	4	0.713
40	40	0.893
41	41	0.862
42	42	0.914
43	43	0.293
44	44	0.112
45	45	0.994
46	46	0.123
47	47	0.524
48	48	0.568
49	49	0.638
5	5	0.714
50	50	0.633
51	51	0.735
52	52	0.357
53	53	0.556
54	54	0.512
55	55	0.0695
56	56	0.984
57	57	0.553
58	58	0.737
59	59	0.00464
6	6	0.36
60	60	0.366
61	61	0.842
62	62	0.475
63	63	0.166
64	64	0.856
65	65	0.263
66	66	0.838
67	67	0.627
68	68	0.983
69	69	0.222
7	7	0.488
70	70	0.14
71	71	0.0959
72	72	0.372
73	73	0.00354
74	74	0.284
75	75	0.414
76	76	0.564
77	77	0.0109
78	78	0.645
79	79	0.0016
8	8	0.0322
80	80	0.162
81	81	0.959
82	82	0.208
83	83	0.293
84	84	0.76
85	85	0.0291
86	86	0.295
87	87	0.0212
88	88	0.261
89	89	0.0175
9	9	0.699
90	90	0.631
91	91	0.88
92	92	0.33
93	93	0.539
94	94	0.676
95	95	0.187
96	96	0.748
97	97	0.901
98	98	0.445
99	99	0.00644

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs11953

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000067 human fibroblast of periodontium sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0000057 (fibroblast)
0002556 (fibroblast of periodontium)

UBERON: Anatomy
0000468 (multi-cellular organism)
0002384 (connective tissue)
0000033 (head)
0000479 (tissue)
0001007 (digestive system)
0004121 (ectoderm-derived structure)
0004119 (endoderm-derived structure)
0010314 (structure with developmental contribution from neural crest)
0011216 (organ system subdivision)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0001444 (subdivision of head)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000075 (subdivision of skeletal system)
0010317 (germ layer / neural crest derived structure)
0001555 (digestive tract)
0001758 (periodontium)
0000153 (anterior region of body)
0007811 (craniocervical region)
0002204 (musculoskeletal system)
0001434 (skeletal system)
0000165 (mouth)
0003672 (dentition)
0011137 (axial skeletal system)
0010323 (cranial skeletal system)
0003129 (skull)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000057 (fibroblast sample)
0000001 (sample)
0000067 (human fibroblast of periodontium sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000134 (mesenchymal cell)

@@ Line 1: / Line 1: @@
 {{f5samples
-|DRA_sample_Accession=CAGE@DRS008170
+|DRA_sample_Accession=CAGE@SAMD00005996
-|accession_numbers=CAGE;DRX008278;DRR009150;DRZ000575;DRZ001960
+|accession_numbers=CAGE;DRX008278;DRR009150;DRZ000575;DRZ001960;DRZ011925;DRZ013310
 |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002384,UBERON:0000033,UBERON:0000479,UBERON:0001007,UBERON:0004121,UBERON:0004119,UBERON:0010314,UBERON:0011216,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0001444,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000075,UBERON:0010317,UBERON:0001555,UBERON:0001758,UBERON:0000153,UBERON:0007811,UBERON:0002204,UBERON:0001434,UBERON:0000165,UBERON:0003672,UBERON:0011137,UBERON:0010323,UBERON:0003129
 |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000255,CL:0000057,CL:0002556
@@ Line 9: / Line 9: @@
 |created_by=
 |creation_date=
-|data_phase=1
+|data_phase=2
-|datafreeze_phase=1
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr9:132427883..132427951,+!p2@PRRX2!1.90!77.54!PRRX2;;chr9:132427972..132428056,+!p1@PRRX2!1.84!87.96!PRRX2;;chr1:170632285..170632309,+!p1@PRRX1!1.79!68.35!PRRX1;;chr1:170633348..170633399,+!p2@PRRX1!1.78!79.99!PRRX1;;chr2:19558373..19558392,-!p1@OSR1!1.59!100.53!OSR1;;chr10:28034739..28034756,-!p1@MKX!1.56!35.55!MKX;;chr1:170633262..170633285,+!p3@PRRX1!1.46!31.87!PRRX1;;chr11:46299199..46299233,+!p1@CREB3L1!1.43!128.42!CREB3L1;;chr7:19157248..19157268,-!p1@TWIST1!1.43!70.49!TWIST1;;chr6:1389789..1389821,+!p1@FOXF2!1.41!33.71!FOXF2;;chr14:61116183..61116208,-!p1@SIX1!1.40!89.19!SIX1;;chr5:72744594..72744609,-!p1@FOXD1!1.37!99.00!FOXD1;;chr6:45296048..45296082,+!p1@RUNX2!1.35!24.21!RUNX2;;chr4:4861385..4861398,+!p1@MSX1!1.29!54.55!MSX1;;chr2:200322654..200322707,-!p2@SATB2!1.26!25.13!SATB2;;chr16:86544113..86544145,+!p1@FOXF1!1.26!21.45!FOXF1;;chr15:57511609..57511651,+!p2@TCF12!1.24!27.28!TCF12;;chr11:46299539..46299620,+!p2@CREB3L1!1.22!26.36!CREB3L1;;chr5:321810..321877,+!p1@AHRR!1.21!47.81!AHRR;;chr1:170632959..170632987,+!p4@PRRX1!1.20!16.24!PRRX1;;chr1:170633058..170633084,+!p5@PRRX1!1.20!15.02!PRRX1;;chr2:239756671..239756732,+!p1@TWIST2!1.18!45.36!TWIST2;;chr1:75602043..75602093,+!p1@LHX8!1.15!13.18!LHX8;;chr20:55204351..55204377,+!p1@TFAP2C!1.14!16.24!TFAP2C;;chr1:75600067..75600094,+!p2@LHX8!1.14!12.87!LHX8;;chr16:86600426..86600441,+!p1@FOXC2!1.12!30.04!FOXC2;;chr11:65686802..65686818,+!p6@DRAP1!1.10!20.23!DRAP1;;chr12:80085061..80085119,-!p6@PAWR!1.05!16.24!PAWR;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!1.05!11.03!GLIS1;;chr1:170632477..170632506,+!p6@PRRX1!1.02!9.50!PRRX1;;chr8:60031934..60031986,-!p6@TOX!1.02!9.50!TOX;;chr11:65686732..65686756,+!p2@DRAP1!1.00!38.62!DRAP1;;chr7:19157043..19157088,-!p2@TWIST1!0.99!22.37!TWIST1;;chr10:131762504..131762555,-!p1@EBF3!0.98!8.58!EBF3;;chr11:65687362..65687436,+!p3@DRAP1!0.97!38.62!DRAP1;;chr11:65687222..65687240,+!p7@DRAP1!0.97!10.73!DRAP1;;chr2:239756739..239756755,+!p2@TWIST2!0.96!14.10!TWIST2;;chr14:24837368..24837401,+!p1@NFATC4!0.95!19.00!NFATC4;;chr14:37131058..37131139,+!p1@PAX9!0.95!7.97!PAX9;;chr2:172950227..172950249,+!p2@DLX1!0.95!7.97!DLX1;;chr19:47523058..47523114,+!p1@NPAS1!0.94!7.66!NPAS1;;chr13:45151259..45151326,-!p2@TSC22D1!0.92!45.67!TSC22D1;;chr1:170632647..170632659,+!p17@PRRX1!0.92!7.36!PRRX1;;chr2:172949484..172949522,+!p1@DLX1!0.92!7.36!DLX1;;chr10:28035133..28035148,-!p3@MKX!0.91!7.05!MKX;;chr13:45150455..45150472,-!p8@TSC22D1!0.89!6.74!TSC22D1;;chr16:54320617..54320643,-!p3@IRX3!0.88!8.58!IRX3;;chr11:65687158..65687216,+!p4@DRAP1!0.87!38.62!DRAP1;;chr17:59477233..59477263,+!p1@TBX2!0.87!20.84!TBX2;;chr1:170632250..170632277,+!p7@PRRX1!0.87!6.44!PRRX1;;chrY:21906594..21906622,-!p1@KDM5D!0.87!6.44!KDM5D;;chr7:44143925..44143970,+!p1@AEBP1!0.86!148.65!AEBP1;;chr11:65687243..65687276,+!p8@DRAP1!0.86!8.58!DRAP1;;chr5:72744445..72744466,-!p2@FOXD1!0.85!10.42!FOXD1;;chr5:139492456..139492489,+!p7@PURA!0.85!6.13!PURA;;chr12:53614115..53614154,-!p1@RARG!0.84!33.41!RARG;;chr5:72743793..72743855,-!p4@FOXD1!0.84!7.05!FOXD1;;chr9:96717629..96717644,-!p1@BARX1!0.83!5.82!BARX1;;chr1:170632310..170632321,+!p15@PRRX1!0.83!5.82!PRRX1;;chr15:42749722..42749739,-!p2@ZFP106!0.81!10.11!ZFP106;;chr8:60031682..60031710,-!p2@TOX!0.81!9.19!TOX;;chr6:1389824..1389840,+!p3@FOXF2!0.81!5.52!FOXF2;;chr2:172967242..172967265,-!p2@DLX2!0.81!5.52!DLX2;;chr2:172967276..172967296,-!p3@DLX2!0.81!5.52!DLX2;;chrY:2803415..2803468,+!p1@ZFY!0.81!5.52!ZFY;;chr16:54320158..54320200,-!p5@IRX3!0.80!7.97!IRX3;;chr14:61116168..61116180,-!p2@SIX1!0.80!6.13!SIX1;;chr11:12696071..12696086,+!p3@TEAD1!0.79!7.05!TEAD1;;chr16:31076332..31076388,-!p3@ZNF668!0.79!5.21!ZNF668;;chr5:72744562..72744573,-!p3@FOXD1!0.78!6.44!FOXD1;;chr6:19837592..19837621,+!p1@ID4!0.77!32.49!ID4;;chr7:96654026..96654061,-!p2@DLX5!0.77!4.90!DLX5;;chr7:96654133..96654150,-!p1@DLX5!0.77!4.90!DLX5;;chr1:170632137..170632172,+!p10@PRRX1!0.77!4.90!PRRX1;;chr2:119604456..119604501,-!p2@EN1!0.77!4.90!EN1;;chr2:119605214..119605230,-!p1@EN1!0.77!4.90!EN1;;chr16:54320646..54320672,-!p2@IRX3!0.75!7.36!IRX3;;chr2:45236540..45236577,-!p1@SIX2!0.75!4.60!SIX2;;chr12:66218598..66218645,+!p2@HMGA2!0.73!22.07!HMGA2;;chr19:47922750..47922795,-!p1@MEIS3!0.72!7.36!MEIS3;;chr16:54319010..54319041,-!p8@IRX3!0.72!4.29!IRX3;;chr7:1577899..1577943,+!p3@MAFK!0.72!4.29!MAFK;;chr12:53625846..53625861,-!p6@RARG!0.72!4.29!RARG;;chr2:172967323..172967336,-!p4@DLX2!0.72!4.29!DLX2;;chr10:63853436..63853442,+!p4@ARID5B!0.71!24.83!ARID5B;;chr10:63809013..63809041,+!p3@ARID5B!0.70!25.44!ARID5B;;chr11:65686776..65686787,+!p9@DRAP1!0.70!4.90!DRAP1;;chr10:28032421..28032494,-!p2@MKX!0.70!3.98!MKX;;chr1:170633245..170633256,+!p14@PRRX1!0.70!3.98!PRRX1;;chr3:37217736..37217753,-!p2@LRRFIP2!0.69!18.39!LRRFIP2;;chr11:65667884..65667895,-!p2@FOSL1!0.69!16.86!FOSL1;;chr16:54320101..54320125,-!p4@IRX3!0.69!5.82!IRX3;;chr12:80084279..80084293,-!p8@PAWR!0.68!6.74!PAWR;;chr10:63809106..63809127,+!p1@ARID5B!0.67!57.93!ARID5B;;chr2:172967621..172967637,-!p1@DLX2!0.67!11.03!DLX2;;chr5:139487608..139487663,+!p3@PURA!0.67!8.58!PURA;;chr14:37132241..37132304,+!p3@PAX9!0.67!3.68!PAX9;;chr16:54320322..54320343,-!p7@IRX3!0.67!3.68!IRX3;;chr11:65686952..65686975,+!p5@DRAP1!0.66!22.37!DRAP1;;chr1:200379104..200379128,-!p2@ZNF281!0.64!9.19!ZNF281;;chr5:174151553..174151610,+!p1@MSX2!0.64!6.13!MSX2;;chr6:1389989..1390019,+!p2@FOXF2!0.64!3.37!FOXF2;;chr8:93074803..93074845,-!p1@RUNX1T1!0.64!3.37!RUNX1T1;;chr1:170632439..170632465,+!p11@PRRX1!0.64!3.37!PRRX1;;chr16:86600870..86600921,+!p2@FOXC2!0.64!3.37!FOXC2;;chr2:45236579..45236596,-!p2@SIX2!0.64!3.37!SIX2;;chr6:45390025..45390076,+!p2@RUNX2!0.63!8.89!RUNX2;;chr8:72756667..72756736,-!p2@MSC!0.63!5.52!MSC;;chr12:66218255..66218304,+!p3@HMGA2!0.62!9.81!HMGA2;;chr2:200323414..200323455,-!p1@SATB2!0.62!7.66!SATB2;;chr5:134369905..134369972,-!p1@PITX1!0.62!5.21!PITX1;;chr7:44143997..44144008,+!p3@AEBP1!0.62!4.29!AEBP1;;chr7:17369649..17369664,+!p4@AHR!0.62!3.98!AHR;;chr14:73360799..73360817,-!p1@DPF3!0.61!12.26!DPF3;;chr5:158526459..158526481,-!p2@EBF1!0.61!4.29!EBF1;;chr12:80085120..80085156,-!p14@PAWR!0.61!3.06!PAWR;;chr1:170632115..170632136,+!p9@PRRX1!0.61!3.06!PRRX1;;chr2:102091566..102091581,-!p1@RFX8!0.61!3.06!RFX8;;chr16:54964740..54964789,+!p1@IRX5!0.60!4.60!IRX5;;chr2:46602901..46602926,+!p7@EPAS1!0.60!4.29!EPAS1;;chr14:75894714..75894733,+!p1@JDP2!0.59!99.61!JDP2;;chr11:65687882..65687902,+!p10@DRAP1!0.59!4.29!DRAP1;;chr3:37216069..37216075,-!p4@LRRFIP2!0.59!3.98!LRRFIP2;;chr6:34204921..34204939,+!p3@HMGA1!0.58!105.43!HMGA1;;chr2:145275162..145275202,-!p2@ZEB2!0.58!19.92!ZEB2;;chr5:158526917..158526932,-!p1@EBF1!0.58!7.97!EBF1;;chr19:13134457..13134462,+!p5@NFIX!0.58!5.52!NFIX;;chr6:28321909..28321965,-!p3@ZNF323!0.58!2.76!ZNF323;;chrY:21906761..21906810,-!p2@KDM5D!0.58!2.76!KDM5D;;chr1:40105299..40105326,-!p1@HEYL!0.58!2.76!HEYL;;chr7:44143978..44143989,+!p2@AEBP1!0.57!5.52!AEBP1;;chr6:1312325..1312340,+!p1@FOXQ1!0.57!4.90!FOXQ1;;chr5:176738887..176738934,-!p1@MXD3!0.56!21.76!MXD3;;chr13:74708475..74708499,-!p5@KLF12!0.56!7.05!KLF12;;chr8:49833978..49833996,-!p1@SNAI2!0.55!66.81!SNAI2;;chr8:49833948..49833973,-!p2@SNAI2!0.55!19.92!SNAI2;;chr12:53625966..53626012,-!p2@RARG!0.55!7.97!RARG;;chr19:13136241..13136258,+!p7@NFIX!0.55!3.68!NFIX;;chr2:191878874..191878938,-!p1@STAT1!0.54!170.10!STAT1;;chr3:178789522..178789564,-!p2@ZMAT3!0.54!22.99!ZMAT3;;chr12:66218212..66218244,+!p5@HMGA2!0.54!3.98!HMGA2;;chr8:72756267..72756296,-!p4@MSC!0.54!3.98!MSC;;chr8:25902876..25902936,-!p1@EBF2!0.54!2.45!EBF2;;chr2:46612891..46612907,+!p10@EPAS1!0.54!2.45!EPAS1;;chr1:170632723..170632739,+!p8@PRRX1!0.54!2.45!PRRX1;;chr20:30433396..30433414,-!p1@FOXS1!0.54!2.45!FOXS1;;chr10:28034772..28034783,-!p4@MKX!0.54!2.45!MKX;;chr10:28035112..28035130,-!p5@MKX!0.54!2.45!MKX;;chr11:46333934..46333963,+!p5@CREB3L1!0.54!2.45!CREB3L1;;chr11:46333979..46333991,+!p7@CREB3L1!0.54!2.45!CREB3L1;;chr17:59477197..59477212,+!p2@TBX2!0.52!4.60!TBX2;;chr12:80085255..80085284,-!p9@PAWR!0.52!3.68!PAWR;;chr10:63809077..63809089,+!p5@ARID5B!0.51!5.82!ARID5B;;chr17:20492136..20492165,+!p1@MEIS3P2!0.51!3.98!MEIS3P2;;chr17:46127997..46128015,+!p5@NFE2L1!0.51!3.37!NFE2L1;;chr2:191878812..191878823,-!p2@STAT1!0.51!3.06!STAT1;;chr3:150126759..150126784,+!p2@TSC22D2!0.50!12.57!TSC22D2;;chr3:141121847..141121868,+!p5@ZBTB38!0.50!3.68!ZBTB38;;chr16:86601052..86601066,+!p4@FOXC2!0.50!2.15!FOXC2;;chr5:174151612..174151633,+!p2@MSX2!0.50!2.15!MSX2;;chr6:1389871..1389876,+!p4@FOXF2!0.50!2.15!FOXF2;;chr6:45296028..45296034,+!p24@RUNX2!0.50!2.15!RUNX2;;chr8:93074848..93074871,-!p3@RUNX1T1!0.50!2.15!RUNX1T1;;chr11:46299443..46299459,+!p4@CREB3L1!0.50!2.15!CREB3L1;;chr1:170632683..170632696,+!p12@PRRX1!0.50!2.15!PRRX1;;chr1:170633294..170633303,+!p23@PRRX1!0.50!2.15!PRRX1;;chr9:96717678..96717689,-!p2@BARX1!0.50!2.15!BARX1;;chr12:48298785..48298828,-!p1@VDR!0.49!14.40!VDR;;chr3:52001426..52001447,-!p3@PCBP4!0.49!7.36!PCBP4;;chr8:60031762..60031803,-!p3@TOX!0.49!3.37!TOX;;chr17:59477275..59477286,+!p3@TBX2!0.49!3.06!TBX2;;chr2:46524537..46524553,+!p1@EPAS1!0.48!271.55!EPAS1;;chr12:80084303..80084332,-!p1@PAWR!0.48!15.63!PAWR;;chr3:141087393..141087426,+!p3@ZBTB38!0.48!10.42!ZBTB38;;chr16:54320675..54320715,-!p1@IRX3!0.48!5.21!IRX3;;chr8:60031809..60031835,-!p4@TOX!0.48!2.76!TOX;;chr10:31607702..31607755,+!p3@ZEB1!0.48!2.45!ZEB1;;chr12:80084737..80084763,-!p3@PAWR!0.47!9.50!PAWR;;chr12:53614155..53614187,-!p3@RARG!0.47!4.60!RARG;;chr11:12696002..12696022,+!p2@TEAD1!0.46!5.82!TEAD1;;chr3:52001448..52001478,-!p2@PCBP4!0.45!34.94!PCBP4;;chr13:45151403..45151433,-!p5@TSC22D1!0.45!4.90!TSC22D1;;chr12:48298765..48298783,-!p2@VDR!0.45!4.60!VDR;;chr12:53848549..53848582,+!p9@PCBP2!0.45!3.06!PCBP2;;chr13:74708246..74708264,-!p8@KLF12!0.45!2.15!KLF12;;chr8:72756637..72756664,-!p3@MSC!0.45!2.15!MSC;;chr10:28032548..28032559,-!p7@MKX!0.45!1.84!MKX;;chr10:28035155..28035166,-!p8@MKX!0.45!1.84!MKX;;chr15:57511589..57511608,+!p4@TCF12!0.45!1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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000057;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002556;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000075;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000165;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001007;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0010323;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0011137
 |ffid_belonging_in_development=CL:0000134
 |fonse_cell_line=
@@ Line 41: / Line 42: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Periodontal%2520Ligament%252c%2520donor5%2520%2528PL30%2529.CNhs11953.11304-117B8.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Periodontal%2520Ligament%252c%2520donor5%2520%2528PL30%2529.CNhs11953.11304-117B8.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Periodontal%2520Ligament%252c%2520donor5%2520%2528PL30%2529.CNhs11953.11304-117B8.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Periodontal%2520Ligament%252c%2520donor5%2520%2528PL30%2529.CNhs11953.11304-117B8.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Periodontal%2520Ligament%252c%2520donor5%2520%2528PL30%2529.CNhs11953.11304-117B8.hg38.nobarcode.ctss.bed.gz
 |id=FF:11304-117B8
 |is_a=EFO:0002091;;FF:0000067
 |is_obsolete=
 |library_id=CNhs11953
-|library_id_phase_based=1:CNhs11953
+|library_id_phase_based=2:CNhs11953
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11304
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11304
 |name=Fibroblast - Periodontal Ligament, donor5 (PL30)
 |namespace=FANTOM5
@@ Line 51: / Line 61: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs11953,LSID836,release011,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11304-117B8;search_select_hide=table117:FF:11304-117B8
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Latest revision as of 16:31, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0