Personal tools

FFCP PHASE1:Mm9::chr17:56110012..56110026,+: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
(Created page with "{{FFCP |id=chr17:56110012..56110026,+ |short_description=p3@Shd |description=CAGE_peak_3_at_Shd_5end |association_with_transcript=107bp_to_NM_001159523,NM_009168,uc008dal....")
 
No edit summary
 
(8 intermediate revisions by the same user not shown)
Line 1: Line 1:
{{FFCP
{{FFCP
|id=chr17:56110012..56110026,+
|DHSsupport=NA
|short_description=p3@Shd
|DPIdataset=NA
|description=CAGE_peak_3_at_Shd_5end
|association_with_transcript=107bp_to_NM_001159523,NM_009168,uc008dal.2,uc008dam.2_5end
|EntrezGene=20420
|EntrezGene=20420
|HGNC=
|HGNC=
|MCL_coexpression_id=87
|TSSclassifier=NA
|UniProt=O88834
|UniProt=O88834
|association_with_transcript=107bp_to_NM_001159523,NM_009168,uc008dal.2,uc008dam.2_5end
|cluster_id=chr17:56110012..56110026,+
|description=CAGE_peak_3_at_Shd_5end
|id=chr17:56110012..56110026,+
|ontology_enrichment_celltype=CL:0000221!5.27e-18!44;CL:0000133!5.27e-18!44;CL:0002319!1.75e-17!43;CL:0000540!8.71e-16!33;CL:0000047!8.71e-16!33;CL:0000031!8.71e-16!33;CL:0000404!8.71e-16!33;CL:0000117!1.73e-15!23;CL:0000337!1.73e-15!23;CL:0000055!5.56e-13!50;CL:0000393!1.28e-11!39;CL:0000211!1.28e-11!39
|ontology_enrichment_celltype_v019_2=CL:0000117,1.46e-23,23;CL:0000337,1.46e-23,23;CL:0000540,1.27e-21,33;CL:0000047,1.27e-21,33;CL:0000031,1.27e-21,33;CL:0000404,1.27e-21,33;CL:0000221,4.57e-20,44;CL:0000133,4.57e-20,44;CL:0002319,3.68e-19,43;CL:0000393,3.82e-17,39;CL:0000211,3.82e-17,39;CL:0002321,1.36e-09,70
|ontology_enrichment_disease=
|ontology_enrichment_disease_v019_2=
|ontology_enrichment_uberon=UBERON:0001017!1.42e-30!73;UBERON:0005743!1.42e-30!73;UBERON:0000073!5.56e-30!75;UBERON:0001016!5.56e-30!75;UBERON:0004121!3.54e-27!102;UBERON:0000924!3.54e-27!102;UBERON:0006601!3.54e-27!102;UBERON:0002346!4.98e-26!71;UBERON:0003075!4.98e-26!71;UBERON:0007284!4.98e-26!71;UBERON:0000033!1.27e-22!63;UBERON:0001049!2.00e-22!52;UBERON:0005068!2.00e-22!52;UBERON:0006241!2.00e-22!52;UBERON:0007135!2.00e-22!52;UBERON:0000955!3.89e-20!50;UBERON:0006238!3.89e-20!50;UBERON:0002616!6.95e-20!49;UBERON:0003056!5.01e-17!49;UBERON:0002020!4.09e-15!34;UBERON:0003080!2.79e-14!40;UBERON:0002780!1.33e-13!39;UBERON:0001890!1.33e-13!39;UBERON:0006240!1.33e-13!39;UBERON:0000153!1.14e-11!94;UBERON:0002791!2.07e-11!29;UBERON:0003528!2.07e-11!29;UBERON:0001893!2.07e-11!29;UBERON:0007811!1.05e-10!86;UBERON:0003076!2.82e-09!12;UBERON:0003057!2.82e-09!12;UBERON:0000956!3.11e-07!21;UBERON:0001869!3.11e-07!21;UBERON:0000203!3.11e-07!21
|ontology_enrichment_uberon_v019_2=UBERON:0001017,8.66e-31,73;UBERON:0002346,1.62e-30,64;UBERON:0003075,1.62e-30,64;UBERON:0007284,1.62e-30,64;UBERON:0004121,1.63e-30,95;UBERON:0000924,1.63e-30,95;UBERON:0006601,1.63e-30,95;UBERON:0001016,1.27e-29,75;UBERON:0010371,2.24e-28,73;UBERON:0000073,1.22e-26,54;UBERON:0001049,3.84e-24,52;UBERON:0005068,3.84e-24,52;UBERON:0006241,3.84e-24,52;UBERON:0007135,3.84e-24,52;UBERON:0010314,6.09e-20,92;UBERON:0003076,5.26e-17,12;UBERON:0003057,5.26e-17,12;UBERON:0002616,1.07e-16,46;UBERON:0000955,3.60e-16,47;UBERON:0006238,3.60e-16,47;UBERON:0002020,1.97e-15,34;UBERON:0003056,2.85e-15,49;UBERON:0003080,2.79e-11,40;UBERON:0002240,1.73e-10,6;UBERON:0005174,1.73e-10,6;UBERON:0001137,1.73e-10,6;UBERON:0002780,2.60e-10,39;UBERON:0001890,2.60e-10,39;UBERON:0006240,2.60e-10,39;UBERON:0003528,1.29e-09,29;UBERON:0002791,1.29e-09,29;UBERON:0001893,1.29e-09,29;UBERON:0001948,3.16e-09,5;UBERON:0002315,3.16e-09,5;UBERON:0000489,7.26e-09,21;UBERON:0004733,4.06e-08,6;UBERON:0004732,4.06e-08,6;UBERON:0002028,4.06e-08,6;UBERON:0007277,4.06e-08,6;UBERON:0002420,6.60e-07,8;UBERON:0007245,6.60e-07,8;UBERON:0010009,6.60e-07,8;UBERON:0010011,6.60e-07,8;UBERON:0000454,6.60e-07,8
|phase1_expression=2.40223270657191,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.425216450755349,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.56478268869608,1.30815093828268,0.439372365468944,0.194429899074283,0.979904951377538,1.43752564364972,0,0,0,0,0.286533439938757,0,5.26022798234954,5.28990979272033,5.07065122804943,0,0,0,0,0,0.898800331555214,0.768436610643109,0.933206510776299,1.08004750665353,0.630974884054146,9.71213346972932,5.74258206474195,1.22490799214954,1.34183659425531,0.919218786610021,4.40463523997555,2.80912143787413,3.22573719838111,6.85808696197008,5.48925861614458,3.64639359389732,2.79182999001381,3.37657566019008,1.68078072554491,5.30331453852602,6.12198227436143,6.52398060388552,0.075726193333184,0.0755715601067855,0,0,0,0.539703191637817,0,0,0.140444420131752,0,0,0,1.40843419776681,0,0,0,0,0,0,0.11418387971906,0,0,0.693941307064543,0.304465478312141,0.230615497256059,0.60289056221049,0.470354828542819,0,0,0,0,0,0,0.484875253135222,0,2.63502717310392,1.67557365450764,0,0,0,0,3.74476598512057,0.457500602818626,0.879580464790051,1.04294592115366,0.511430914660661,2.70124457927428,2.10913641988085,0,0,0,0,1.69156575851515,2.98872735763515,3.24111833649629,2.26057226753573,1.76894897793452,0.384341160854549,1.40552586839593,0.258703370739016,1.07783996466421,2.26927296201383,1.40760899331159,0.876782929710299,0.278047249225598,0,0.411564272815887,0.199034266818493,0,0,0,0.414251545071004,0.703578179943289,0.36012412292203,0.23674473558521,0.393528463494808,0,0.232533944750408,0.536546802799238,0.233530684734339,0,0,0.0810688095458557,0.146199987425332,0,0.134206418760372,0.841159794256509,0.411618449517138,0,0,1.49301775374664,0.464473343720877,0.515469845288373,0.201683524623343,0,0,0,0,0.251335208800269,0,0,0,0.216138049874694,0,1.32767530667157,1.25673363870702,1.1270773567308,1.22190796707189,1.74557238450863,1.61312385747733,1.70738650235495,0.295220295959204,0,0.740382983530803,0,0,0,0,0.202860121388503,0,0,0,0.162135226775035,0,0,0,0,0,0.179397413521912,0,0.184753190166605,0.947457058852424,0,0,0.469380496577004,0,0,0,0.788175720530955,0.221464689648775,0.318909537314974,0,0,0,0,0,0,0,2.72936002979246,3.7507739709505,0,0,0.631016438832513,1.95219372148319,3.23135096599198,0,0.222798674082394,0,0.404810701674894,0.876767573733936,1.18586333383957,0.642642632843614,0.141940085208269,0.35613120733451,0,0,0,0.242780636154981,0,0,0,0.307435147943927,0,0,0,0,0,0,0,1.26042765821917,2.8458910432206,0.857348140126369,0.532020700926821,0.535106452806212,0.493647061806363,0.304464949114599,0,0,0,0,0.161464426695906,0,0,0.164140899745061,0,2.96680483216816,0,0.82554747185289,0,0,0,0,0,0.139951452323658,0,0,1.26534397432454,0.406638934253697,0.108005340821801,0.209088296014469,0.218362563746178,0,0.0826534557253359,0,0,0,0,0.299033092087958,0.330916980914195,0.194451188344048,0.129159823477731,0.168956125490778,0,0.13020438484395,0,0,0,0,0.608175645870493,0.102710957164827,0,0,0,0,0,0,0,0,0,0,0,0,0.221985953374065,0,0.167884616364078,0.19318959403219,0,0.183151624267265,0,0,2.25900737046827,1.38097570952153,0.572895513439397,1.3748254587495,1.37016503954128,1.5107877947794,3.37511250115903,0.900642406448441,0,2.07104124700728,1.66059756134683,2.39414924040619,1.19513524027894,0.243106717068294,0.419226325255965,0.183843508450014,0.44449345560323,0.412070114477788,0.962757628775446,0.758091635291392,0.760437899670719,0.377252682772152,0.655490552289177,0.832326981263301,0.34461281373368,0,0.347652977834566,0.192909220463705,0.412085900803307,0.441596760403192,0,0.532427418478012,0.476872379894642,0.872078499793971,0.658765662907314,0.507687647350059,0.365855945745545,0.789209134313529,0.950628796921032,0,0.474540072496697,0.591026894253381,0.409231043169689,0.77468420592983,0,0.999242311751784,0.467863216890817,0.644613162144895,0.57386499620653,0.220591419119515,0
|phase1_expression=2.40223270657191,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.425216450755349,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.56478268869608,1.30815093828268,0.439372365468944,0.194429899074283,0.979904951377538,1.43752564364972,0,0,0,0,0.286533439938757,0,5.26022798234954,5.28990979272033,5.07065122804943,0,0,0,0,0,0.898800331555214,0.768436610643109,0.933206510776299,1.08004750665353,0.630974884054146,9.71213346972932,5.74258206474195,1.22490799214954,1.34183659425531,0.919218786610021,4.40463523997555,2.80912143787413,3.22573719838111,6.85808696197008,5.48925861614458,3.64639359389732,2.79182999001381,3.37657566019008,1.68078072554491,5.30331453852602,6.12198227436143,6.52398060388552,0.075726193333184,0.0755715601067855,0,0,0,0.539703191637817,0,0,0.140444420131752,0,0,0,1.40843419776681,0,0,0,0,0,0,0.11418387971906,0,0,0.693941307064543,0.304465478312141,0.230615497256059,0.60289056221049,0.470354828542819,0,0,0,0,0,0,0.484875253135222,0,2.63502717310392,1.67557365450764,0,0,0,0,3.74476598512057,0.457500602818626,0.879580464790051,1.04294592115366,0.511430914660661,2.70124457927428,2.10913641988085,0,0,0,0,1.69156575851515,2.98872735763515,3.24111833649629,2.26057226753573,1.76894897793452,0.384341160854549,1.40552586839593,0.258703370739016,1.07783996466421,2.26927296201383,1.40760899331159,0.876782929710299,0.278047249225598,0,0.411564272815887,0.199034266818493,0,0,0,0.414251545071004,0.703578179943289,0.36012412292203,0.23674473558521,0.393528463494808,0,0.232533944750408,0.536546802799238,0.233530684734339,0,0,0.0810688095458557,0.146199987425332,0,0.134206418760372,0.841159794256509,0.411618449517138,0,0,1.49301775374664,0.464473343720877,0.515469845288373,0.201683524623343,0,0,0,0,0.251335208800269,0,0,0,0.216138049874694,0,1.32767530667157,1.25673363870702,1.1270773567308,1.22190796707189,1.74557238450863,1.61312385747733,1.70738650235495,0.295220295959204,0,0.740382983530803,0,0,0,0,0.202860121388503,0,0,0,0.162135226775035,0,0,0,0,0,0.179397413521912,0,0.184753190166605,0.947457058852424,0,0,0.469380496577004,0,0,0,0.788175720530955,0.221464689648775,0.318909537314974,0,0,0,0,0,0,0,2.72936002979246,3.7507739709505,0,0,0.631016438832513,1.95219372148319,3.23135096599198,0,0.222798674082394,0,0.404810701674894,0.876767573733936,1.18586333383957,0.642642632843614,0.141940085208269,0.35613120733451,0,0,0,0.242780636154981,0,0,0,0.307435147943927,0,0,0,0,0,0,0,1.26042765821917,2.8458910432206,0.857348140126369,0.532020700926821,0.535106452806212,0.493647061806363,0.304464949114599,0,0,0,0,0.161464426695906,0,0,0.164140899745061,0,2.96680483216816,0,0.82554747185289,0,0,0,0,0,0.139951452323658,0,0,1.26534397432454,0.406638934253697,0.108005340821801,0.209088296014469,0.218362563746178,0,0.0826534557253359,0,0,0,0,0.299033092087958,0.330916980914195,0.194451188344048,0.129159823477731,0.168956125490778,0,0.13020438484395,0,0,0,0,0.608175645870493,0.102710957164827,0,0,0,0,0,0,0,0,0,0,0,0,0.221985953374065,0,0.167884616364078,0.19318959403219,0,0.183151624267265,0,0,2.25900737046827,1.38097570952153,0.572895513439397,1.3748254587495,1.37016503954128,1.5107877947794,3.37511250115903,0.900642406448441,0,2.07104124700728,1.66059756134683,2.39414924040619,1.19513524027894,0.243106717068294,0.419226325255965,0.183843508450014,0.44449345560323,0.412070114477788,0.962757628775446,0.758091635291392,0.760437899670719,0.377252682772152,0.655490552289177,0.832326981263301,0.34461281373368,0,0.347652977834566,0.192909220463705,0.412085900803307,0.441596760403192,0,0.532427418478012,0.476872379894642,0.872078499793971,0.658765662907314,0.507687647350059,0.365855945745545,0.789209134313529,0.950628796921032,0,0.474540072496697,0.591026894253381,0.409231043169689,0.77468420592983,0,0.999242311751784,0.467863216890817,0.644613162144895,0.57386499620653,0.220591419119515,0
|short_description=p3@Shd
}}
}}

Latest revision as of 16:43, 26 September 2015

Short description:p3@Shd
Species:Mouse (Mus musculus)
DPI dataset: NA
TSS-like-by-RIKEN-classifier(Yes/No): NA
DHS support(Yes/No): NA
Description: CAGE_peak_3_at_Shd_5end
Coexpression cluster:MCL_coexpression_mm9:87
Association with transcript: 107bp_to_NM_001159523, NM_009168, uc008dal.2, uc008dam.2_5end
EntrezGene:Shd
Link to Zenbu:ZENBU


View on UCSC genome browser

Mouse over to see Genome browser image, Click image to go to Genome browser


CAGE Expression

Sample

p3@Shd

Atoh1+ Inner ear hair cells - organ of corti, pool1.CNhs12533.12158-128G72.40
CD326+ enterocyte isolated from mice, treated with RANKL, day03, pool1.CNhs13242.11850-124I50.00
CD326+ enterocyte isolated from mice, treated with RANKL, day03, pool2.CNhs13233.11851-124I60.00
CD326+ enterocyte, pool1.CNhs13542.11848-124I30.00
CD326+ enterocyte, pool2.CNhs13197.11849-124I40.00
CD326++ enterocyte isolated from mice, treated with RANKL, day03, pool1.CNhs13236.11852-124I70.00
CD326++ enterocyte isolated from mice, treated with RANKL, day03, pool2.CNhs13210.11853-124I80.00
CD4+CD25+ regulatory T cells, pool2 (Balb_cAJcl).CNhs13221.11818-124E90.00
CD4+CD25-CD44- naive conventional T cells, PMA and ionomycin stimulation, 02hr, pool1 (C57BL_6J).CNhs13219.11816-124E70.00
CD4+CD25-CD44- naive conventional T cells, PMA and ionomycin stimulation, 02hr, pool2 (Balb_cAJcl).CNhs13226.11820-124F20.00
CD4+CD25-CD44- naive conventional T cells, antiCD3_CD28 stimulation, 06hr, pool1 (C57BL_6J).CNhs13218.11815-124E60.00
CD4+CD25-CD44- naive conventional T cells, antiCD3_CD28 stimulation, 06hr, pool2 (Balb_cAJcl).CNhs13225.11819-124F10.00
CD4+CD25-CD44- naive conventional T cells, pool1 (C57BL_6J).CNhs13217.11813-124E40.00
CD4+CD25-CD44- naive conventional T cells, pool2 (Balb_cAJcl).CNhs13220.11817-124E80.00
CD41+ megakaryocyte cancer, donor1.CNhs13079.11774-124A10.00
CD41+ megakaryocyte cancer, donor2.CNhs13213.11776-124A30.00
CD41+ megakaryocyte cancer, donor3.CNhs13506.11778-124A50.00
CD41+ megakaryocyte control, donor1.CNhs13212.11775-124A20.00
CD41+ megakaryocyte control, donor2.CNhs13214.11777-124A40.00
CD41+ megakaryocyte control, donor3.CNhs13201.11779-124A60.00
Clontech Mouse Universal Reference Total RNA, pool1.CNhs10609.10001-101A30.43
EBF KO HPCs induced to T cell, 00hr00min, biol_rep1.CNhs11058.12972-138H20.00
EBF KO HPCs induced to T cell, 00hr00min, biol_rep2.CNhs12980.12988-138I90.00
Follicle Associated Epithelium, pool2.CNhs13211.10262-104D10.00
Follicle Associated Epithelium, pool3.CNhs13200.10263-104D20.00
GP2+ M cell, pool1.CNhs13228.11845-124H90.00
GP2+ M cell, pool2.CNhs13231.11846-124I10.00
GP2+ M cell, pool3.CNhs13240.11847-124I20.00
Ileum epithelium, pool1.CNhs13199.10252-104B90.00
Ileum epithelium, pool2.CNhs13232.10253-104C10.00
Ileum epithelium, treated with RANKL, day03, pool3.CNhs13234.10260-104C80.00
J2E erythroblastic leukemia response to erythropoietin, 00hr00min, biol_rep1.CNhs12449.13063-139I30.00
J2E erythroblastic leukemia response to erythropoietin, 00hr00min, biol_rep2.CNhs12668.13129-140G60.00
J2E erythroblastic leukemia response to erythropoietin, 00hr00min, biol_rep3.CNhs12770.13195-141E90.00
Lgr5 positive intestinal stem cells, pool1.CNhs12555.12228-129F50.00
Lgr5 positive intestinal stem cells, pool2.CNhs12556.12229-129F60.00
Lgr5 positive intestinal stem cells, pool3.CNhs12557.12230-129F70.00
MC1+Gr1+ myeloid-derived suppressor cells cancer, donor1 (10,11,12 3LL).CNhs12539.12159-128G80.00
MC1+Gr1+ myeloid-derived suppressor cells cancer, donor2 (0127 3LL).CNhs12198.12161-128H10.00
MC1+Gr1+ myeloid-derived suppressor cells cancer, donor3 (0128 3LL).CNhs12542.12163-128H30.00
MC1+Gr1+ myeloid-derived suppressor cells control, donor1 (4,5,6PBS).CNhs12540.12160-128G90.00
MC1+Gr1+ myeloid-derived suppressor cells control, donor2 (0127 PBS).CNhs12541.12162-128H20.00
MC1+Gr1+ myeloid-derived suppressor cells control, donor3 (0128 PBS).CNhs12543.12164-128H40.00
Mouse Aortic Smooth Muscle cells - differentiated, biol_rep1.CNhs11055.11484-119D80.00
Mouse Aortic Smooth Muscle cells - differentiated, biol_rep2.CNhs11056.11485-119D90.00
Mouse Aortic Smooth Muscle cells, donor1.CNhs11297.11299-117B30.00
Mouse Astrocytes - cerebellar, donor1.CNhs13077.11708-123B71.56
Mouse Astrocytes - cerebellar, donor2.CNhs12076.11550-120C21.31
Mouse Astrocytes - hippocampus, donor1.CNhs12129.11709-123B80.44
Mouse Astrocytes - hippocampus, donor2.CNhs12077.11551-120C30.19
Mouse Astrocytes, donor2.CNhs12078.11552-120C40.98
Mouse Astrocytes, donor3.CNhs12107.11633-122C41.44
Mouse CD19+ B Cells, donor1.CNhs13531.11856-125A20.00
Mouse CD4+ T Cells, donor1.CNhs13509.11854-124I90.00
Mouse CD8+ T Cells, donor1.CNhs13511.11855-125A10.00
Mouse Cardiac Myocytes, donor1.CNhs12355.11711-123C10.00
Mouse Cardiac Myocytes, donor2.CNhs12356.11729-123E10.29
Mouse Cardiac Myocytes, donor3.CNhs12353.11634-122C50.00
Mouse Granule cells, donor1.CNhs12131.11713-123C35.26
Mouse Granule cells, donor2.CNhs12357.11731-123E35.29
Mouse Granule cells, donor3.CNhs12108.11636-122C75.07
Mouse Meningeal cells, donor1.CNhs12132.11716-123C60.00
Mouse Meningeal cells, donor3.CNhs12109.11639-122D10.00
Mouse Mesenchymal stem cells - bone marrow derived, donor1.CNhs12628.11717-123C70.00
Mouse Mesenchymal stem cells - bone marrow derived, donor2.CNhs12633.11735-123E70.00
Mouse Mesenchymal stem cells - bone marrow derived, donor3.CNhs12616.11640-122D20.00
Mouse Microglia, donor1.CNhs12629.11718-123C80.90
Mouse Microglia, donor2.CNhs12634.11736-123E80.77
Mouse Neurons - cortical, donor1.CNhs12025.11724-123D50.93
Mouse Neurons - cortical, donor2.CNhs11947.11742-123F51.08
Mouse Neurons - cortical, donor3.CNhs12112.11647-122D90.63
Mouse Neurons - dorsal spinal cord, donor2.CNhs12635.11738-123F19.71
Mouse Neurons - dorsal spinal cord, donor3.CNhs12618.11643-122D55.74
Mouse Neurons - hippocampal, donor1.CNhs12133.11721-123D21.22
Mouse Neurons - hippocampal, donor2.CNhs12359.11739-123F21.34
Mouse Neurons - hippocampal, donor3.CNhs12110.11644-122D60.92
Mouse Neurons - raphe, donor1.CNhs12631.11722-123D34.40
Mouse Neurons - raphe, donor2.CNhs12636.11740-123F32.81
Mouse Neurons - raphe, donor3.CNhs12619.11645-122D73.23
Mouse Neurons - striatal, donor1.CNhs12134.11723-123D46.86
Mouse Neurons - striatal, donor2.CNhs12360.11741-123F45.49
Mouse Neurons - striatal, donor3.CNhs12111.11646-122D83.65
Mouse Neurons - substantia nigra, donor4, tech_rep1.CNhs12612.11489-119E42.79
Mouse Neurons - substantia nigra, donor5.CNhs12614.11490-119E53.38
Mouse Neurons - substantia nigra, donor6.CNhs12643.11770-123I61.68
Mouse Neurons - ventral spinal cord, donor1.CNhs12632.11725-123D65.30
Mouse Neurons - ventral spinal cord, donor2.CNhs12638.11743-123F66.12
Mouse Neurons - ventral spinal cord, donor3.CNhs12113.11648-122E16.52
Mouse Schwann, donor1.CNhs12507.11728-123D90.08
Mouse Schwann, donor2.CNhs12573.11746-123F90.08
Mouse hepatic Sinusoidal Endothelial Cells, donor1.CNhs13209.11830-124G30.00
Mouse hepatic Stellate Cells (lipocyte), donor1.CNhs13196.11825-124F70.00
Mouse hepatocyte, donor1.CNhs13078.11714-123C40.00
Mouse hepatocyte, donor3.CNhs12615.11637-122C80.54
Mouse hepatocyte, donor6.CNhs13090.11822-124F40.00
Mouse hepatocyte, donor8.CNhs13091.11824-124F60.00
SABiosciences XpressRef Mouse Universal Total RNA, pool1.CNhs10611.10003-101A70.14
ST2 (Mesenchymal stem cells) cells, medium change (without induction), 00hr, biol_rep1 (000hC4).CNhs11939.12338-130I70.00
ST2 (Mesenchymal stem cells) cells, medium change (without induction), 00hr, biol_rep2 (000hC5).CNhs13275.12460-132E30.00
ST2 (Mesenchymal stem cells) cells, medium change (without induction), 00hr, biol_rep3 (000hC6).CNhs13324.12582-133I80.00
Sox2+ Supporting cells - organ of corti, pool1.CNhs12532.12157-128G61.41
TSt-4/DLL1 feeder cells, biol_rep1.CNhs13407.12971-138H10.00
TSt-4/DLL1 feeder cells, biol_rep2.CNhs13408.12987-138I80.00
TSt-4/DLL1 feeder cells, biol_rep3.CNhs13409.13003-139B60.00
Tracheal epithelial cells, differentiation to ciliated epithelial cells, 000hr, biol_rep1.CNhs13739.13367-143G10.00
Tracheal epithelial cells, differentiation to ciliated epithelial cells, 000hr, biol_rep2.CNhs13740.13368-143G20.00
Tracheal epithelial cells, differentiation to ciliated epithelial cells, 000hr, biol_rep3.CNhs13741.13369-143G30.00
Universal RNA - Mouse Normal Tissues Biochain, pool1.CNhs10613.10008-101B60.11
accessory axillary lymph node, adult.CNhs10475.1063-29H90.00
adrenal gland, adult.CNhs10508.49-24D70.00
adrenal gland, embryo E14.CNhs11038.406-44C50.69
adrenal gland, embryo E16.CNhs11004.1254-43D60.30
adrenal gland, embryo E17.CNhs11043.1263-45I10.23
adrenal gland, embryo E18.CNhs11026.1262-18F50.60
adrenal gland, neonate N00.CNhs11191.1311-23C10.47
adrenal gland, neonate N25.CNhs11223.1377-27I30.00
amnion, adult pregnant day17.5.CNhs10488.583-22A80.00
aorta, adult.CNhs10498.46-23H10.00
bone (os femoris), adult.CNhs10483.56-12G20.00
bone (os femoris), neonate N02.CNhs11227.1985-43F50.00
bone (os femoris), neonate N16.CNhs11225.1525-43A60.00
bone (os femoris), neonate N20.CNhs11195.1350-25C30.48
cecum, adult.CNhs10467.37-13H40.00
cerebellum, adult.CNhs10494.15-8B22.64
cerebellum, neonate N30.CNhs11135.1395-42I21.68
colon, adult.CNhs10468.36-18H70.00
common myeloid progenitor CMP, biol_rep1.CNhs12550.12122-128C70.00
common myeloid progenitor CMP, biol_rep2.CNhs12203.12125-128D10.00
common myeloid progenitor CMP, biol_rep3.CNhs12551.12128-128D40.00
corpora quadrigemina, adult.CNhs10501.16-22A43.74
corpus striatum, adult.CNhs10487.19-21D80.46
corpus striatum, neonate N00.CNhs11226.630-43F10.88
cortex, adult.CNhs10473.12-14D51.04
cortex, neonate N30.CNhs11107.1392-42F20.51
diencephalon, adult.CNhs10482.20-12F22.70
diencephalon, neonate N30.CNhs11201.1388-42B22.11
epididymis and seminiferous tubule, neonate N00.CNhs11218.1310-23B10.00
epididymis and seminiferous tubule, neonate N30.CNhs11199.1387-42A20.00
epididymis, adult.CNhs10490.58-23B20.00
eyeball, adult.CNhs10484.31-12G40.00
eyeball, embryo E12.CNhs11016.345-16C61.69
eyeball, embryo E14.CNhs10521.399-16E22.99
eyeball, embryo E15.CNhs10593.426-16C93.24
eyeball, embryo E17.CNhs11023.1261-18D42.26
eyeball, neonate N00.CNhs11207.633-15C61.77
eyeball, neonate N01.CNhs11140.1532-43E70.38
eyeball, neonate N02.CNhs11205.1551-44G81.41
eyeball, neonate N16.CNhs11188.777-19A20.26
forelimb, embryo E11.CNhs10596.335-25E21.08
forelimb, embryo E12.CNhs10600.359-14H22.27
forelimb, embryo E13.CNhs10589.384-1E21.41
forelimb, embryo E14.CNhs10577.413-26A80.88
forelimb, embryo E15.CNhs11007.437-20E70.28
forelimb, embryo E17.CNhs10598.1517-43C40.00
forelimb, embryo E18.CNhs11008.1520-43B50.41
gonad, embryo E13.CNhs11044.1564-45I60.20
granulocyte macrophage progenitor GMP, biol_rep1.CNhs12206.12123-128C80.00
granulocyte macrophage progenitor GMP, biol_rep2.CNhs12202.12126-128D20.00
granulocyte macrophage progenitor GMP, biol_rep3.CNhs11928.12129-128D50.00
heart, embryo E11.CNhs10586.331-24E90.41
heart, embryo E12.CNhs11015.353-12F50.70
heart, embryo E13.CNhs11013.376-3I90.36
heart, embryo E14.CNhs10597.403-26D40.24
heart, embryo E15.CNhs11017.431-16C80.39
heart, embryo E16.CNhs11021.457-17C60.00
heart, embryo E17.CNhs11025.479-18E50.23
heart, embryo E18.CNhs11030.1283-20G30.54
heart, neonate N00.CNhs11213.639-21E30.23
heart, neonate N03.CNhs11221.1349-25I20.00
heart, neonate N10.CNhs11118.749-24G10.00
heart, neonate N16.CNhs11209.782-15G10.08
heart, neonate N20.CNhs11127.821-26I60.15
heart, neonate N25.CNhs11196.1351-25D30.00
heart, neonate N30.CNhs11202.1390-42D20.13
hippocampus, adult.CNhs10478.13-16E80.84
hippocampus, neonate N00.CNhs11228.627-43G10.41
intestinal mucosa, adult.CNhs10506.860-29I30.00
intestine, adult.CNhs10496.178-9A30.00
intestine, embryo E12.CNhs11019.1251-16I51.49
intestine, embryo E13.CNhs11010.381-16D50.46
intestine, embryo E15.CNhs10602.976-16D80.52
intestine, embryo E16.CNhs10585.463-22H40.20
intestine, embryo E17.CNhs10582.482-18D30.00
intestine, embryo E18.CNhs10526.1289-20F70.00
intestine, neonate N00.CNhs11126.644-26D10.00
intestine, neonate N01.CNhs11192.1322-23E90.00
intestine, neonate N06.CNhs11102.688-20B80.25
intestine, neonate N07.CNhs11095.720-20F20.00
intestine, neonate N10.CNhs11098.755-23A50.00
intestine, neonate N20.CNhs11187.827-18D10.00
intestine, neonate N25.CNhs11121.1352-25E30.22
intestine, neonate N30.CNhs11131.1384-42G10.00
kidney, embryo E14.CNhs10606.411-4I91.33
kidney, embryo E15.CNhs10997.434-16F81.26
kidney, embryo E16.CNhs10584.464-22A51.13
kidney, embryo E17.CNhs11028.483-18I21.22
kidney, embryo E18.CNhs11001.1288-20C71.75
kidney, neonate N00.CNhs11214.646-21G71.61
kidney, neonate N10.CNhs11206.758-6D51.71
kidney, neonate N20.CNhs11113.832-19I10.30
kidney, neonate N25.CNhs11122.1353-25F30.00
kidney, neonate N30.CNhs11203.1385-42H10.74
liver, adult pregnant day01.CNhs10466.508-5B20.00
liver, embryo E12.CNhs10601.355-15F80.00
liver, embryo E13.CNhs10524.378-3H60.00
liver, embryo E14.CNhs10594.409-16E10.00
liver, embryo E15.CNhs10520.433-16D70.20
liver, embryo E16.CNhs10523.462-17F50.00
liver, embryo E17.CNhs10510.481-18A30.00
liver, embryo E18.CNhs10579.499-43G40.00
liver, neonate N00.CNhs11117.641-24F40.16
liver, neonate N03.CNhs11123.1345-25G20.00
liver, neonate N06.CNhs11101.684-20A80.00
liver, neonate N07.CNhs11103.716-20H20.00
liver, neonate N10.CNhs11115.751-24B90.00
liver, neonate N20.CNhs11220.823-25A30.00
liver, neonate N25.CNhs11198.1368-26H10.18
liver, neonate N30.CNhs11106.1382-42D10.00
lung, adult.CNhs10474.28-22B10.18
lung, embryo E12.CNhs10522.354-16G20.95
lung, embryo E14.CNhs10604.404-26F80.00
lung, embryo E15.CNhs11020.432-17C50.00
lung, embryo E16.CNhs10998.458-17B60.47
lung, embryo E17.CNhs10605.480-44A60.00
lung, embryo E18.CNhs10583.1287-20I60.00
lung, neonate N00.CNhs11224.640-42C60.00
lung, neonate N06.CNhs11212.683-20E50.79
lung, neonate N07.CNhs11111.715-19A30.22
lung, neonate N10.CNhs11219.750-23E60.32
lung, neonate N20.CNhs11109.822-18A40.00
lung, neonate N25.CNhs11119.1359-25C70.00
lung, neonate N30.CNhs11133.1394-42H20.00
macrophage, bone marrow derived, pool1.CNhs11457.3560-170A10.00
macrophage, bone marrow derived, pool2.CNhs11532.3632-171A10.00
mammary gland, adult lactating day02.CNhs10480.595-22B60.00
mammary gland, adult pregnant day19.CNhs10476.588-5H20.00
medulla oblongata, adult.CNhs10477.17-12C22.73
medulla oblongata, neonate N30.CNhs11200.1396-42A33.75
mouse fibroblast cell line: CRL-1658 NIH/3T3.CNhs11093.1830-49C70.00
muscle (biceps femoris), neonate N30.CNhs11129.1389-42C20.00
neurospheres - enteric neuron derived, biol_rep1.CNhs13087.11810-124E10.63
neurospheres - enteric neuron derived, biol_rep2.CNhs13088.11811-124E21.95
neurospheres - enteric neuron derived, biol_rep3.CNhs13089.11812-124E33.23
neurospheres - parasympathetic neuron derived, biol_rep1.CNhs13084.11807-124D70.00
neurospheres - parasympathetic neuron derived, biol_rep2.CNhs13085.11808-124D80.22
neurospheres - parasympathetic neuron derived, biol_rep3.CNhs13086.11809-124D90.00
neurospheres - sympathetic neuron derived, biol_rep1.CNhs13081.11804-124D40.40
neurospheres - sympathetic neuron derived, biol_rep2.CNhs13082.11805-124D50.88
neurospheres - sympathetic neuron derived, biol_rep3.CNhs13083.11806-124D61.19
olfactory brain, adult.CNhs10489.18-22I90.64
ovary, adult.CNhs10507.91-2I70.14
ovary, embryo E18.CNhs11040.505-44H70.36
ovary, neonate N00.CNhs11217.1299-22I40.00
oviduct, adult pregnant day01.CNhs10500.988-6G60.00
pancreas, adult.CNhs10486.34-16E40.00
pancreas, embryo E14.CNhs11012.405-44F40.24
pancreas, embryo E15.CNhs11042.1556-45F20.00
pancreas, embryo E16.CNhs11003.460-26E50.00
pancreas, embryo E17.CNhs10599.1558-45G30.00
pancreas, embryo E18.CNhs10580.1535-43I70.31
pancreas, neonate N00.CNhs11105.645-26G90.00
pancreas, neonate N01.CNhs11138.1531-43D70.00
pancreas, neonate N02.CNhs11139.1539-43D80.00
pancreas, neonate N16.CNhs11136.787-43B60.00
pancreas, neonate N25.CNhs11094.1555-45E20.00
pancreas, neonate N30.CNhs11182.1548-44H50.00
pituitary gland, adult.CNhs10493.21-1G80.00
pituitary gland, embryo E12.CNhs11018.346-16E61.26
pituitary gland, embryo E13.CNhs11009.370-44C72.85
pituitary gland, embryo E14.CNhs11037.398-44A50.86
pituitary gland, embryo E15.CNhs10592.427-16B90.53
pituitary gland, embryo E16.CNhs11036.449-43F60.54
pituitary gland, embryo E17.CNhs11039.1265-44F50.49
pituitary gland, neonate N00.CNhs11190.1308-22E90.30
placenta, adult pregnant day10.CNhs10472.539-13I70.00
placenta, adult pregnant day17.CNhs10464.577-18G30.00
prostate, adult.CNhs10470.859-1F80.00
skin, adult.CNhs10492.30-1C30.00
skin, neonate N00.CNhs11124.650-25G40.16
skin, neonate N03.CNhs11215.662-22H30.00
skin, neonate N06.CNhs11097.693-20I50.00
skin, neonate N10.CNhs11108.762-6C40.16
small intestine, neonate N16.CNhs11114.790-21I10.00
spinal cord, adult.CNhs10505.24-13C92.97
spleen, adult.CNhs10465.25-2G20.00
spleen, embryo E16.CNhs11035.461-43C10.83
spleen, embryo E18.CNhs11011.1271-21F20.00
spleen, neonate N10.CNhs11116.752-24D10.00
spleen, neonate N20.CNhs11112.824-19H10.00
spleen, neonate N25.CNhs11099.1354-25G30.00
stem cell (cKit+ Sca1- lineage-) KSL, biol_rep1.CNhs12534.12121-128C60.00
stem cell (cKit+ Sca1- lineage-) KSL, biol_rep2.CNhs12535.12124-128C90.14
stem cell (cKit+ Sca1- lineage-) KSL, biol_rep3.CNhs12536.12127-128D30.00
stomach, adult.CNhs10503.33-1H60.00
stomach, embryo E12.CNhs10588.356-43E31.27
stomach, embryo E15.CNhs10603.1252-16G80.41
stomach, embryo E16.CNhs11022.459-17D40.11
stomach, embryo E17.CNhs11006.1035-18D50.21
stomach, embryo E18.CNhs10999.1286-20C60.22
stomach, neonate N03.CNhs11193.1340-24B80.00
stomach, neonate N07.CNhs11210.718-18A90.08
stomach, neonate N25.CNhs11104.1355-25E40.00
stomach, neonate N30.CNhs11134.1386-42I10.00
submandibular gland, adult.CNhs10469.59-29C10.00
testis, adult.CNhs10504.57-7G50.00
testis, embryo E13.CNhs11031.389-23F50.30
testis, embryo E15.CNhs11034.443-27C50.33
testis, embryo E16.CNhs11033.470-26G50.19
testis, embryo E17.CNhs11029.486-18I50.13
testis, embryo E18.CNhs11027.503-18G50.17
testis, neonate N00.CNhs11189.1300-22B70.00
testis, neonate N07.CNhs11222.726-26I40.13
testis, neonate N10.CNhs11204.763-44D90.00
testis, neonate N20.CNhs11110.839-18H30.00
testis, neonate N30.CNhs11130.1391-42E20.00
thymus, adult.CNhs10471.38-12B50.00
thymus, embryo E14.CNhs11041.402-44I40.61
thymus, embryo E15.CNhs11005.430-45I20.10
thymus, embryo E16.CNhs11002.456-26C50.00
thymus, embryo E17.CNhs10581.478-18C10.00
thymus, embryo E18.CNhs10595.1273-19G40.00
thymus, neonate N02.CNhs11181.1541-43F80.00
thymus, neonate N03.CNhs11137.2104-43C70.00
thymus, neonate N06.CNhs11197.681-26C40.00
thymus, neonate N07.CNhs11211.713-19D30.00
thymus, neonate N10.CNhs11194.748-24E40.00
thymus, neonate N20.CNhs11186.820-7A20.00
thymus, neonate N25.CNhs11125.1362-25G70.00
thymus, neonate N30.CNhs11132.1393-42G20.00
tongue, adult.CNhs10499.32-1B40.00
trophoblast stem cell line B1 differentiation, day00, biol_rep1.CNhs13526.13297-142H30.22
trophoblast stem cell line R1AB differentiation, day00, biol_rep1.CNhs13481.13283-142F70.00
trophoblast stem cell line Rybp differentiation, day00, biol_rep1.CNhs13519.13290-142G50.17
urinary bladder, adult.CNhs10481.879-12E40.19
uterus, adult pregnant day19.CNhs10497.590-15F50.00
uterus, adult.CNhs10509.92-27E50.18
vagina, adult.CNhs10502.89-27D50.00
vesicular gland, adult.CNhs10491.51-27F80.00
visual cortex - wildtype, neonate N15, donor1.CNhs13031.10235-104A12.26
visual cortex - wildtype, neonate N15, donor2.CNhs13032.10236-104A21.38
visual cortex - wildtype, neonate N15, donor3.CNhs13033.10237-104A30.57
visual cortex - wildtype, neonate N15, donor5.CNhs13820.10349-105D71.37
visual cortex - wildtype, neonate N30, donor1.CNhs13034.10238-104A41.37
visual cortex - wildtype, neonate N30, donor2.CNhs13035.10239-104A51.51
visual cortex - wildtype, neonate N30, donor3.CNhs13036.10240-104A63.38
visual cortex - wildtype, neonate N60-70, donor1.CNhs13037.10241-104A70.90
visual cortex - wildtype, neonate N60-70, donor2.CNhs13038.10242-104A80.00
visual cortex - wildtype, neonate N60-70, donor3.CNhs13039.10243-104A92.07
whole body, embryo E11.CNhs11014.324-5I81.66
whole body, embryo E12.CNhs10587.857-27C92.39
whole body, embryo E13.CNhs10512.372-23H21.20
whole body, embryo E14.5.CNhs10578.420-27D20.24
whole body, embryo E14.CNhs10519.395-14B10.42
whole body, embryo E16.CNhs10514.453-14F20.18
whole body, embryo E17.5, pool1 (internal control).CNhs10479.3139-67G50.44
whole body, embryo E17.5, pool1 (internal control).CNhs10495.3139-67G50.41
whole body, embryo E17.5, pool1 (internal control).CNhs10511.3139-67G50.96
whole body, embryo E17.5, pool1 (internal control).CNhs10527.3139-67G50.76
whole body, embryo E17.5, pool1 (internal control).CNhs10591.3139-67G50.76
whole body, embryo E17.5, pool1 (internal control).CNhs10607.3139-67G50.38
whole body, embryo E17.5, pool1 (internal control).CNhs10623.3139-67G50.66
whole body, embryo E17.5, pool1 (internal control).CNhs10639.3139-67G50.83
whole body, embryo E17.5, pool1 (internal control).CNhs10655.3139-67G50.34
whole body, embryo E17.5, pool1 (internal control).CNhs10725.3139-67G50.00
whole body, embryo E17.5, pool1 (internal control).CNhs10749.3139-67G50.35
whole body, embryo E17.5, pool1 (internal control).CNhs10840.3139-67G50.19
whole body, embryo E17.5, pool1 (internal control).CNhs10856.3139-67G50.41
whole body, embryo E17.5, pool1 (internal control).CNhs10880.3139-67G50.44
whole body, embryo E17.5, pool1 (internal control).CNhs11000.3139-67G50.00
whole body, embryo E17.5, pool1 (internal control).CNhs11024.3139-67G50.53
whole body, embryo E17.5, pool1 (internal control).CNhs11032.3139-67G50.48
whole body, embryo E17.5, pool1 (internal control).CNhs11048.3139-67G50.87
whole body, embryo E17.5, pool1 (internal control).CNhs11072.3139-67G50.66
whole body, embryo E17.5, pool1 (internal control).CNhs11080.3139-67G50.51
whole body, embryo E17.5, pool1 (internal control).CNhs11096.3139-67G50.37
whole body, embryo E17.5, pool1 (internal control).CNhs11120.3139-67G50.79
whole body, embryo E17.5, pool1 (internal control).CNhs11128.3139-67G50.95
whole body, embryo E17.5, pool1 (internal control).CNhs11184.3139-67G50.00
whole body, embryo E17.5, pool1 (internal control).CNhs11208.3139-67G50.47
whole body, embryo E17.5, pool1 (internal control).CNhs11216.3139-67G50.59
whole body, embryo E17.5, pool1 (internal control).CNhs11246.3139-67G50.41
whole body, embryo E17.5, pool1 (internal control).CNhs11278.3139-67G50.77
whole body, embryo E17.5.CNhs10513.490-9F90.00
whole body, embryo E17.CNhs10517.475-3I51.00
whole body, embryo E18.CNhs10516.493-3B30.47
whole body, neonate N00.CNhs10525.657-19C20.64
whole body, neonate N01.CNhs10576.659-23C60.57
whole body, neonate N06.CNhs10515.692-21D10.22
whole body, neonate N10.CNhs10518.761-6B40.00





  • Click each plot point to find sample in table


Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data

Cell type
Ontology termp-valuen
CNS neuron (sensu Vertebrata)1.46e-2323
neuroblast (sensu Vertebrata)1.46e-2323
neuron1.27e-2133
neuronal stem cell1.27e-2133
neuroblast1.27e-2133
electrically signaling cell1.27e-2133
ectodermal cell4.57e-2044
neurectodermal cell4.57e-2044
neural cell3.68e-1943
electrically responsive cell3.82e-1739
electrically active cell3.82e-1739
embryonic cell1.36e-0970

Uber anatomy
Ontology termp-valuen
central nervous system8.66e-3173
neurectoderm1.62e-3064
neural plate1.62e-3064
presumptive neural plate1.62e-3064
ectoderm-derived structure1.63e-3095
ectoderm1.63e-3095
presumptive ectoderm1.63e-3095
nervous system1.27e-2975
ecto-epithelium2.24e-2873
regional part of nervous system1.22e-2654
neural tube3.84e-2452
neural rod3.84e-2452
future spinal cord3.84e-2452
neural keel3.84e-2452
structure with developmental contribution from neural crest6.09e-2092
posterior neural tube5.26e-1712
chordal neural plate5.26e-1712
regional part of brain1.07e-1646
brain3.60e-1647
future brain3.60e-1647
gray matter1.97e-1534
pre-chordal neural plate2.85e-1549
anterior neural tube2.79e-1140
spinal cord1.73e-106
dorsal region element1.73e-106
dorsum1.73e-106
regional part of forebrain2.60e-1039
forebrain2.60e-1039
future forebrain2.60e-1039
brain grey matter1.29e-0929
regional part of telencephalon1.29e-0929
telencephalon1.29e-0929
regional part of spinal cord3.16e-095
gray matter of spinal cord3.16e-095
cavitated compound organ7.26e-0921
segmental subdivision of hindbrain4.06e-086
segmental subdivision of nervous system4.06e-086
hindbrain4.06e-086
presumptive hindbrain4.06e-086
basal ganglion6.60e-078
nuclear complex of neuraxis6.60e-078
aggregate regional part of brain6.60e-078
collection of basal ganglia6.60e-078
cerebral subcortex6.60e-078
Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=FFCP_PHASE1:Mm9::chr17:56110012..56110026,%2B&oldid=4263421"