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{{f5samples
{{f5samples
|id=FF:10441-106E9
|DRA_sample_Accession=CAGE@SAMD00005318
|name=synovial sarcoma cell line:HS-SY-II
|HumanCAGEScanFiles=NCig10066;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.cell_line.CAGEScan/synovial%2520sarcoma%2520cell%2520line%253aHS-SY-II%252c%2520tech_rep1.NCig10066.10441-106E9.hg19.GCTATA.3prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.cell_line.CAGEScan/synovial%2520sarcoma%2520cell%2520line%253aHS-SY-II%252c%2520tech_rep1.NCig10066.10441-106E9.hg19.GCTATA.5prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.cell_line.CAGEScan/synovial%2520sarcoma%2520cell%2520line%253aHS-SY-II%252c%2520tech_rep1.NCig10066.10441-106E9.hg19.GCTATA.bam;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.cell_line.CAGEScan/synovial%2520sarcoma%2520cell%2520line%253aHS-SY-II%252c%2520tech_rep1.NCig10066.10441-106E9.hg19.GCTATA.pairs.bed.gz!NCig10130;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.cell_line.CAGEScan/synovial%2520sarcoma%2520cell%2520line%253aHS-SY-II%252c%2520tech_rep2.NCig10130.10441-106E9.hg19.GCTATA.3prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.cell_line.CAGEScan/synovial%2520sarcoma%2520cell%2520line%253aHS-SY-II%252c%2520tech_rep2.NCig10130.10441-106E9.hg19.GCTATA.5prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.cell_line.CAGEScan/synovial%2520sarcoma%2520cell%2520line%253aHS-SY-II%252c%2520tech_rep2.NCig10130.10441-106E9.hg19.GCTATA.bam;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.cell_line.CAGEScan/synovial%2520sarcoma%2520cell%2520line%253aHS-SY-II%252c%2520tech_rep2.NCig10130.10441-106E9.hg19.GCTATA.pairs.bed.gz
|sample_id=10441
|accession_numbers=CAGE;DRX008018;DRR008890;DRZ000315;DRZ001700;DRZ011665;DRZ013050
|rna_tube_id=106E9
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000483,UBERON:0002384,UBERON:0000479,UBERON:0000064,UBERON:0000062,UBERON:0004120,UBERON:0004457,UBERON:0000061,UBERON:0000465,UBERON:0004923,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0006914,UBERON:0004905,UBERON:0000486,UBERON:0006915,UBERON:0007616,UBERON:0000042,UBERON:0000982,UBERON:0004458,UBERON:0010317,UBERON:0002217,UBERON:0002018,UBERON:0002204,UBERON:0001434,UBERON:0004770
|rna_box=106
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000151,CL:0002320,CL:0000066,CL:0002371,CL:0000213,CL:0002078,CL:0000499,CL:0000153,CL:0000327,CL:0000447,CL:0000215,CL:0000255,CL:0000214
|rna_position=E9
|ancestors_in_disease_facet=DOID:4,DOID:162,DOID:14566,DOID:0050687,DOID:1115
|sample_cell_lot=
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0100400
|sample_cell_catalog=RCB2231
|comment=
|sample_company=RIKEN Bioresource centre
|created_by=
|rna_lot_number=
|creation_date=
|rna_catalog_number=
|data_phase=2
|sample_species=Human (Homo sapiens)
|datafreeze_phase=2
|sample_strain=
|def=
|sample_dev_stage=
|expression_enrichment_score=chr12:54379029..54379057,+!p2@HOXC10!2.36!228.77!HOXC10;;chr14:29234581..29234601,+!p2@FOXG1!2.18!151.15!FOXG1;;chr7:19157248..19157268,-!p1@TWIST1!2.12!348.20!TWIST1;;chr2:223163706..223163730,-!p1@PAX3!2.00!99.87!PAX3;;chr16:86544113..86544145,+!p1@FOXF1!1.99!119.43!FOXF1;;chr12:54393880..54393962,+!p1@HOXC9!1.95!87.41!HOXC9;;chr5:2751762..2751784,-!p1@IRX2!1.89!76.68!IRX2;;chr12:54348655..54348693,+!p1@HOXC12!1.86!71.15!HOXC12;;chr15:57511609..57511651,+!p2@TCF12!1.85!113.91!TCF12;;chrX:85403445..85403479,+!p2@DACH2!1.84!68.63!DACH2;;chr13:72441074..72441172,-!p2@DACH1!1.83!67.37!DACH1;;chr13:72441315..72441454,-!p1@DACH1!1.74!104.13!DACH1;;chr3:147127177..147127194,+!p2@ZIC1!1.74!53.64!ZIC1;;chr12:54348702..54348715,+!p2@HOXC12!1.69!47.49!HOXC12;;chr3:147127142..147127168,+!p1@ZIC1!1.68!47.33!ZIC1;;chr7:155250249..155250278,+!p@chr7:155250249..155250278,+!1.67!45.91!EN2;;chr5:174151612..174151633,+!p2@MSX2!1.64!42.28!MSX2;;chr6:1312325..1312340,+!p1@FOXQ1!1.62!65.00!FOXQ1;;chr5:174151553..174151610,+!p1@MSX2!1.61!65.16!MSX2;;chr17:46682321..46682362,-!p1@HOXB6!1.59!38.34!HOXB6;;chr13:100634031..100634045,+!p1@ZIC2!1.59!38.18!ZIC2;;chr14:29235961..29236008,+!p1@FOXG1!1.57!36.29!FOXG1;;chr10:131762504..131762555,-!p1@EBF3!1.56!35.50!EBF3;;chr12:54384370..54384382,+!p5@HOXC6!1.52!31.87!HOXC6;;chr8:106330656..106330684,+!p1@ZFPM2!1.51!80.94!ZFPM2;;chr2:172967621..172967637,-!p1@DLX2!1.48!76.36!DLX2;;chr6:1389789..1389821,+!p1@FOXF2!1.47!38.81!FOXF2;;chr9:126774018..126774055,+!p1@LHX2!1.47!28.24!LHX2;;chr2:237077022..237077038,-!p1@GBX2!1.46!28.08!GBX2;;chr15:42749722..42749739,-!p2@ZFP106!1.44!47.17!ZFP106;;chr5:2751785..2751808,-!p2@IRX2!1.43!25.72!IRX2;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.42!25.40!HOXC5;;chr15:68115672..68115691,+!p1@SKOR1!1.42!25.09!SKOR1;;chrX:84498989..84499003,+!p1@ZNF711!1.38!31.40!ZNF711;;chr4:4861385..4861398,+!p1@MSX1!1.37!65.00!MSX1;;chr2:172949484..172949522,+!p1@DLX1!1.36!22.09!DLX1;;chr6:10412600..10412637,-!p1@TFAP2A!1.35!35.34!TFAP2A;;chr2:176964515..176964540,+!p1@HOXD12!1.35!21.61!HOXD12;;chr14:61116183..61116208,-!p1@SIX1!1.34!77.47!SIX1;;chr2:60780753..60780800,-!p1@BCL11A!1.33!97.98!BCL11A;;chr6:10415276..10415341,-!p2@TFAP2A!1.33!25.09!TFAP2A;;chr6:19837592..19837621,+!p1@ID4!1.32!118.80!ID4;;chr19:47523058..47523114,+!p1@NPAS1!1.32!19.72!NPAS1;;chr7:156803329..156803362,-!p1@MNX1!1.30!18.93!MNX1;;chr9:96717629..96717644,-!p1@BARX1!1.29!18.62!BARX1;;chr2:175199697..175199706,+!p2@SP9!1.28!17.99!SP9;;chr18:72922743..72922761,+!p3@TSHZ1!1.27!56.48!TSHZ1;;chr17:46667594..46667619,-!p1@HOXB3!1.27!17.51!HOXB3;;chr17:41622765..41622821,-!p2@ETV4!1.26!25.87!ETV4;;chr12:66218598..66218645,+!p2@HMGA2!1.25!76.05!HMGA2;;chr8:106330696..106330719,+!p2@ZFPM2!1.25!21.46!ZFPM2;;chr12:54366894..54366922,+!p2@HOXC11!1.25!16.88!HOXC11;;chr8:77593474..77593612,+!p1@ZFHX4!1.24!67.84!ZFHX4;;chr9:1050331..1050363,+!p1@DMRT2!1.24!16.57!DMRT2;;chr13:100623375..100623425,-!p1@ZIC5!1.24!16.41!ZIC5;;chr13:100634130..100634143,+!p3@ZIC2!1.24!16.41!ZIC2;;chr12:66218183..66218209,+!p4@HMGA2!1.23!30.77!HMGA2;;chr2:185463247..185463263,+!p1@ZNF804A!1.23!28.40!ZNF804A;;chr1:221052994..221053008,+!p6@HLX!1.23!18.77!HLX;;chr6:10412392..10412409,-!p4@TFAP2A!1.23!18.14!TFAP2A;;chr3:147123837..147123848,-!p7@ZIC4!1.23!16.09!ZIC4;;chr9:132427883..132427951,+!p2@PRRX2!1.23!16.09!PRRX2;;chr11:129245526..129245553,+!p1@BARX2!1.21!15.30!BARX2;;chr12:66218255..66218304,+!p3@HMGA2!1.20!39.60!HMGA2;;chr15:57511589..57511608,+!p4@TCF12!1.20!14.83!TCF12;;chr3:147127489..147127503,+!p11@ZIC1!1.20!14.67!ZIC1;;chr8:144512897..144512903,-!p1@MAFA!1.20!14.67!MAFA;;chr12:54366975..54367001,+!p1@HOXC11!1.19!14.36!HOXC11;;chr9:126773880..126773895,+!p2@LHX2!1.19!14.36!LHX2;;chr12:54332652..54332671,+!p2@HOXC13!1.18!14.20!HOXC13;;chr14:29236269..29236285,+!p3@FOXG1!1.18!14.20!FOXG1;;chr12:66218378..66218401,+!p6@HMGA2!1.17!21.30!HMGA2;;chr12:54378923..54378966,+!p1@HOXC10!1.17!13.88!HOXC10;;chr5:153857778..153857794,-!p1@HAND1!1.17!13.88!HAND1;;chr4:8873545..8873583,-!p1@HMX1!1.17!13.73!HMX1;;chr2:60780607..60780624,-!p2@BCL11A!1.16!40.86!BCL11A;;chr2:172967242..172967265,-!p2@DLX2!1.15!13.10!DLX2;;chr8:60031682..60031710,-!p2@TOX!1.14!20.83!TOX;;chr12:66218212..66218244,+!p5@HMGA2!1.14!18.46!HMGA2;;chr12:54366949..54366973,+!p3@HOXC11!1.14!12.94!HOXC11;;chr7:27192185..27192209,-!p1@HOXA3!1.14!12.78!HOXA3;;chr20:61051039..61051057,-!p1@GATA5!1.13!12.62!GATA5;;chr12:66218836..66218888,+!p1@HMGA2!1.12!114.70!HMGA2;;chr12:54332608..54332636,+!p1@HOXC13!1.12!12.31!HOXC13;;chr12:54379066..54379073,+!p11@HOXC10!1.12!12.15!HOXC10;;chr13:100634004..100634025,+!p2@ZIC2!1.12!12.15!ZIC2;;chr16:1031762..1031781,+!p1@SOX8!1.12!12.15!SOX8;;chrX:84499081..84499115,+!p2@ZNF711!1.11!17.67!ZNF711;;chr13:100638100..100638115,+!p4@ZIC2!1.11!11.99!ZIC2;;chr1:214161272..214161322,+!p1@PROX1!1.10!16.57!PROX1;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!1.10!12.31!GLIS1;;chr4:109089901..109089930,-!p3@LEF1!1.10!11.68!LEF1;;chr2:5832508..5832524,+!p1@SOX11!1.10!11.52!SOX11;;chr1:221052840..221052875,+!p4@HLX!1.09!13.57!HLX;;chr3:147124307..147124336,-!p2@ZIC4!1.09!11.36!ZIC4;;chr4:111544219..111544240,-!p1@PITX2!1.09!11.36!PITX2;;chr18:72922811..72922827,+!p1@TSHZ1!1.08!55.54!TSHZ1;;chr8:77596014..77596033,+!p6@ZFHX4!1.08!10.89!ZFHX4;;chr2:19558373..19558392,-!p1@OSR1!1.07!29.35!OSR1;;chr16:86600426..86600441,+!p1@FOXC2!1.07!26.82!FOXC2;;chr3:169381420..169381535,-!p1@MECOM!1.07!12.62!MECOM;;chr9:20621927..20621996,-!p3@MLLT3!1.06!17.67!MLLT3;;chr5:3595977..3595999,+!p1@IRX1!1.06!10.57!IRX1;;chr3:128206762..128206781,-!p2@GATA2!1.05!64.84!GATA2;;chr10:70320074..70320106,+!p1@TET1!1.05!20.98!TET1;;chr16:52581025..52581072,-!p1@TOX3!1.05!10.10!TOX3;;chr18:19749541..19749557,+!p1@GATA6!1.04!31.40!GATA6;;chr16:54320675..54320715,-!p1@IRX3!1.04!21.93!IRX3;;chr3:181429704..181429722,+!p1@SOX2!1.04!9.94!SOX2;;chr4:111558135..111558198,-!p2@PITX2!1.04!9.94!PITX2;;chr8:49833978..49833996,-!p1@SNAI2!1.03!204.00!SNAI2;;chr5:3595934..3595957,+!p2@IRX1!1.03!9.78!IRX1;;chr8:25902876..25902936,-!p1@EBF2!1.03!9.62!EBF2;;chr15:68117844..68117858,+!p3@SKOR1!1.03!9.62!SKOR1;;chr9:129376233..129376251,+!p2@LMX1B!1.03!9.62!LMX1B;;chr2:237076992..237077008,-!p2@GBX2!1.03!9.62!GBX2;;chr7:149470641..149470694,-!p1@ZNF467!1.02!43.86!ZNF467;;chr7:28448965..28448994,+!p2@CREB5!1.02!33.92!CREB5;;chr7:150946015..150946070,-!p3@SMARCD3!1.02!20.67!SMARCD3;;chr22:19748231..19748317,+!p1@TBX1!1.02!9.47!TBX1;;chr12:54332687..54332701,+!p3@HOXC13!1.02!9.47!HOXC13;;chr10:70320041..70320065,+!p2@TET1!1.01!9.31!TET1;;chr2:172967276..172967296,-!p3@DLX2!1.01!9.15!DLX2;;chr19:1753498..1753519,+!p1@ONECUT3!1.01!9.15!ONECUT3;;chr1:6479968..6479986,-!p1@HES2!1.01!9.15!HES2;;chr12:66218152..66218174,+!p10@HMGA2!1.00!9.78!HMGA2;;chr2:85981107..85981120,+!p3@ATOH8!1.00!8.99!ATOH8;;chr14:89029904..89029917,+!p5@ZC3H14!1.00!8.99!ZC3H14;;chr7:42276822..42276895,-!p2@GLI3!0.99!26.66!GLI3;;chr9:132427972..132428056,+!p1@PRRX2!0.99!11.52!PRRX2;;chr17:46703687..46703740,-!p1@HOXB9!0.99!8.84!HOXB9;;chr22:22874610..22874616,-!p1@ZNF280A!0.99!8.84!ZNF280A;;chr10:101292684..101292706,+!p1@NKX2-3!0.99!8.68!NKX2-3;;chr16:67197654..67197716,+!p3@HSF4!0.99!8.68!HSF4;;chr17:46675558..46675577,-!p2@HOXB6!0.99!8.68!HOXB6;;chr19:33793430..33793447,-!p1@CEBPA!0.98!37.23!CEBPA;;chr11:125034640..125034655,+!p1@PKNOX2!0.98!8.52!PKNOX2;;chr8:49833948..49833973,-!p2@SNAI2!0.97!55.06!SNAI2;;chr7:42276787..42276815,-!p1@GLI3!0.97!22.88!GLI3;;chr16:54320617..54320643,-!p3@IRX3!0.97!10.73!IRX3;;chr16:51185172..51185197,-!p1@SALL1!0.97!8.36!SALL1;;chr17:46806067..46806097,-!p1@HOXB13!0.97!8.36!HOXB13;;chr5:92918919..92918942,+!p1@NR2F1!0.96!37.71!NR2F1;;chr17:41623692..41623715,-!p1@ETV4!0.96!36.13!ETV4;;chr2:171572525..171572547,+!p6@SP5!0.96!8.20!SP5;;chr2:175199675..175199688,+!p1@SP9!0.96!8.20!SP9;;chr14:33403881..33403924,+!p1@NPAS3!0.96!8.20!NPAS3;;chr15:96874012..96874042,+!p2@NR2F2!0.95!73.21!NR2F2;;chr6:1610293..1610310,+!p1@FOXC1!0.95!13.41!FOXC1;;chr1:18957605..18957623,+!p3@PAX7!0.95!7.89!PAX7;;chr16:54320646..54320672,-!p2@IRX3!0.94!11.99!IRX3;;chr18:53068911..53068935,-!p4@TCF4!0.94!8.68!TCF4;;chrY:21906594..21906622,-!p1@KDM5D!0.94!7.73!KDM5D;;chr10:126138597..126138612,-!p1@NKX1-2!0.94!7.73!NKX1-2;;chr1:170632477..170632506,+!p6@PRRX1!0.94!7.73!PRRX1;;chr12:66218443..66218461,+!p8@HMGA2!0.93!9.62!HMGA2;;chr11:129245736..129245758,+!p2@BARX2!0.93!7.57!BARX2;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!0.93!7.57!HOXC5;;chr17:41622731..41622764,-!p5@ETV4!0.93!7.57!ETV4;;chr2:172950227..172950249,+!p2@DLX1!0.93!7.57!DLX1;;chr15:68115921..68115938,+!p2@SKOR1!0.93!7.42!SKOR1;;chr8:60031619..60031676,-!p1@TOX!0.92!16.41!TOX;;chr2:166326200..166326216,+!p1@CSRNP3!0.92!11.04!CSRNP3;;chr16:54964740..54964789,+!p1@IRX5!0.92!10.73!IRX5;;chr16:54319010..54319041,-!p8@IRX3!0.92!7.26!IRX3;;chr2:172967323..172967336,-!p4@DLX2!0.92!7.26!DLX2;;chr6:1389824..1389840,+!p3@FOXF2!0.92!7.26!FOXF2;;chr6:1612300..1612324,+!p3@FOXC1!0.92!7.26!FOXC1;;chr4:53206..53260,+!p1@ZNF595,p1@ZNF718!0.91!70.52!ZNF595;;chr15:96874145..96874166,+!p7@NR2F2!0.91!14.04!NR2F2;;chr19:31840130..31840160,-!p2@TSHZ3!0.91!11.36!TSHZ3;;chr8:60031762..60031803,-!p3@TOX!0.91!10.57!TOX;;chr5:92919100..92919135,+!p3@NR2F1!0.91!8.68!NR2F1;;chr2:172967353..172967365,-!p5@DLX2!0.91!7.10!DLX2;;chr14:29237009..29237049,+!p4@FOXG1!0.91!7.10!FOXG1;;chr14:61125018..61125037,-!p9@SIX1!0.91!7.10!SIX1;;chr17:46703212..46703238,-!p2@HOXB9!0.91!7.10!HOXB9;;chr10:114710098..114710130,+!p2@TCF7L2!0.90!55.06!TCF7L2;;chr12:24715376..24715432,-!p1@SOX5!0.90!8.99!SOX5;;chr8:77593448..77593471,+!p2@ZFHX4!0.90!6.94!ZFHX4;;chr2:71127699..71127744,+!p1@VAX2!0.89!14.51!VAX2;;chr20:35202909..35202963,+!p2@TGIF2,p3@C20orf24!0.89!9.94!TGIF2;;chr8:60031809..60031835,-!p4@TOX!0.89!8.68!TOX;;chr9:126774058..126774081,+!p3@LHX2!0.89!6.78!LHX2;;chr1:151032860..151032918,+!p1@MLLT11!0.88!82.20!MLLT11;;chr2:200322654..20032270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|sample_tissue=synovium
|ffid_belonging_in_development=CL:0000134,CL:0000222
|sample_donor(cell lot)=
|sample_sex=unknown
|sample_age=
|sample_ethnicity=
|rna_rin=9.5
|rna_od260/230=0.76
|rna_od260/280=2.09
|sample_cell_type=unclassifiable
|sample_cell_line=HS-SY-II
|sample_collaboration=Yukio Nakamura (RIKEN BRC)
|sample_experimental_condition=
|sample_disease=synovial sarcoma
|rna_sample_type=total RNA
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
|rna_weight_ug=20.71675
|rna_concentration=0.82867
|sample_note=
|profile_hcage=CNhs11244,LSID757,release008,COMPLETED
|profile_cagescan=NCig10066,,,
|profile_srnaseq=,,,
|profile_rnaseq=,,,
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000004,CL:0000012,CL:0000034,CL:0000048,CL:0000063,CL:0000066,CL:0000134,CL:0000144,CL:0000151,CL:0000153,CL:0000213,CL:0000214,CL:0000215,CL:0000219,CL:0000220,CL:0000222,CL:0000255,CL:0000327,CL:0000447,CL:0000499,CL:0000548,CL:0000723,CL:0002078,CL:0002320,CL:0002321,CL:0002371
|ancestors_in_anatomy_facet=UBERON:0000042,UBERON:0000061,UBERON:0000062,UBERON:0000064,UBERON:0000119,UBERON:0000465,UBERON:0000467,UBERON:0000468,UBERON:0000477,UBERON:0000479,UBERON:0000480,UBERON:0000483,UBERON:0000486,UBERON:0000922,UBERON:0000923,UBERON:0000926,UBERON:0000982,UBERON:0001062,UBERON:0001434,UBERON:0002018,UBERON:0002050,UBERON:0002204,UBERON:0002217,UBERON:0002384,UBERON:0002532,UBERON:0004120,UBERON:0004457,UBERON:0004458,UBERON:0004765,UBERON:0004770,UBERON:0004905,UBERON:0004923,UBERON:0005423,UBERON:0006914,UBERON:0006915,UBERON:0007616
|ancestors_in_disease_facet=DOID:0050687,DOID:1115,DOID:14566,DOID:162,DOID:4
|sample_description=
|fonse_cell_line=FF:0100400
|fonse_cell_line=FF:0100400
|fonse_cell_line_closure=FF:0100400
|fonse_cell_line_closure=FF:0100400
Line 66: Line 41:
|fonse_treatment=
|fonse_treatment=
|fonse_treatment_closure=
|fonse_treatment_closure=
|top_motifs=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/synovial%2520sarcoma%2520cell%2520line%253aHS-SY-II.CNhs11244.10441-106E9.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/synovial%2520sarcoma%2520cell%2520line%253aHS-SY-II.CNhs11244.10441-106E9.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/synovial%2520sarcoma%2520cell%2520line%253aHS-SY-II.CNhs11244.10441-106E9.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/synovial%2520sarcoma%2520cell%2520line%253aHS-SY-II.CNhs11244.10441-106E9.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/synovial%2520sarcoma%2520cell%2520line%253aHS-SY-II.CNhs11244.10441-106E9.hg38.nobarcode.ctss.bed.gz
|id=FF:10441-106E9
|is_a=CL:0000214;;EFO:0002091;;FF:0000210;;FF:0100400
|is_obsolete=
|library_id=CNhs11244
|library_id_phase_based=2:CNhs11244
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10441
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10441
|name=synovial sarcoma cell line:HS-SY-II
|namespace=FANTOM5
|part_of=
|profile_cagescan=NCig10066,,,
|profile_hcage=CNhs11244,LSID757,release008,COMPLETED
|profile_rnaseq=
|profile_srnaseq=,,,
|refex=http://refex.dbcls.jp/genelist.php?lang
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|rna_box=106
|rna_catalog_number=
|rna_concentration=0.82867
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
|rna_lot_number=
|rna_od260/230=0.76
|rna_od260/280=2.09
|rna_position=E9
|rna_rin=9.5
|rna_sample_type=total RNA
|rna_tube_id=1.06E+11
|rna_weight_ug=20.71675
|sample_age=
|sample_category=cell lines
|sample_cell_catalog=RCB2231
|sample_cell_line=HS-SY-II
|sample_cell_lot=
|sample_cell_type=unclassifiable
|sample_collaboration=Yukio Nakamura (RIKEN BRC)
|sample_company=RIKEN Bioresource centre
|sample_description=
|sample_dev_stage=
|sample_disease=synovial sarcoma
|sample_donor(cell lot)=
|sample_ethnicity=
|sample_experimental_condition=
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;3.32901864794922e-299!GO:0043231;intracellular membrane-bound organelle;5.26786116796655e-269!GO:0043227;membrane-bound organelle;5.26786116796655e-269!GO:0043226;organelle;6.87509843011092e-267!GO:0043229;intracellular organelle;4.56854200515146e-266!GO:0044422;organelle part;5.2318010783095e-169!GO:0044446;intracellular organelle part;1.56217342411911e-167!GO:0005634;nucleus;1.41022700290284e-155!GO:0005737;cytoplasm;2.1072666973381e-146!GO:0044238;primary metabolic process;2.24634622883632e-118!GO:0044237;cellular metabolic process;2.24634622883632e-118!GO:0043170;macromolecule metabolic process;2.08870651291858e-117!GO:0032991;macromolecular complex;8.10272884356858e-115!GO:0044444;cytoplasmic part;1.66896207483649e-104!GO:0044428;nuclear part;1.73308088840942e-104!GO:0043233;organelle lumen;2.55064552781414e-98!GO:0031974;membrane-enclosed lumen;2.55064552781414e-98!GO:0030529;ribonucleoprotein complex;6.47326739706822e-95!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;4.79444237433505e-92!GO:0003723;RNA binding;5.24946171170371e-90!GO:0010467;gene expression;2.6986088601682e-88!GO:0043283;biopolymer metabolic process;2.26250839595398e-85!GO:0003676;nucleic acid binding;3.0318564120082e-74!GO:0005739;mitochondrion;1.93849047340051e-67!GO:0005515;protein binding;1.88998994601093e-66!GO:0006396;RNA processing;2.49552770754921e-65!GO:0031981;nuclear lumen;3.58000037847965e-65!GO:0043234;protein complex;1.27972629334319e-58!GO:0016043;cellular component organization and biogenesis;2.80148702561984e-56!GO:0016070;RNA metabolic process;2.46767712149006e-55!GO:0005840;ribosome;1.94301220909322e-52!GO:0006259;DNA metabolic process;6.6436710730974e-51!GO:0016071;mRNA metabolic process;3.35668084499302e-49!GO:0006412;translation;2.69408601461934e-47!GO:0044429;mitochondrial part;4.76227104978461e-47!GO:0006996;organelle organization and biogenesis;1.13781837550329e-45!GO:0003735;structural constituent of ribosome;8.91125069221717e-45!GO:0008380;RNA splicing;1.62649646812577e-44!GO:0043228;non-membrane-bound organelle;3.08274074220715e-44!GO:0043232;intracellular non-membrane-bound organelle;3.08274074220715e-44!GO:0006397;mRNA processing;7.47235134636018e-44!GO:0005654;nucleoplasm;6.91201937588851e-43!GO:0031967;organelle envelope;4.80537643173677e-42!GO:0031975;envelope;8.45431955617879e-42!GO:0031090;organelle membrane;6.44779539753666e-41!GO:0033279;ribosomal subunit;3.62026626291508e-39!GO:0033036;macromolecule localization;1.01952843730861e-38!GO:0015031;protein transport;1.1710387929439e-37!GO:0065003;macromolecular complex assembly;2.8628755316733e-37!GO:0022613;ribonucleoprotein complex biogenesis and assembly;9.32976869902778e-37!GO:0019538;protein metabolic process;4.85150523592257e-36!GO:0044451;nucleoplasm part;1.38510895098798e-35!GO:0046907;intracellular transport;6.28231839297156e-35!GO:0007049;cell cycle;1.23085652588764e-34!GO:0008104;protein localization;2.77159546316858e-34!GO:0045184;establishment of protein localization;1.44037967178271e-33!GO:0044249;cellular biosynthetic process;1.48713962165712e-33!GO:0022607;cellular component assembly;2.66518089085097e-32!GO:0009059;macromolecule biosynthetic process;2.82182991179759e-32!GO:0044267;cellular protein metabolic process;2.96333606686636e-32!GO:0009058;biosynthetic process;1.04741556632854e-31!GO:0044260;cellular macromolecule metabolic process;1.26723294353542e-31!GO:0005694;chromosome;2.70343006966372e-31!GO:0005681;spliceosome;2.44391381890973e-30!GO:0000166;nucleotide binding;2.92392699387939e-30!GO:0005829;cytosol;4.40546723653413e-30!GO:0005740;mitochondrial envelope;4.7738716346074e-28!GO:0006886;intracellular protein transport;5.46346360017428e-28!GO:0019866;organelle inner membrane;2.23070237603553e-27!GO:0006974;response to DNA damage stimulus;2.7341174889023e-27!GO:0005830;cytosolic ribosome (sensu Eukaryota);3.58945236906014e-27!GO:0044427;chromosomal part;4.49868411883322e-27!GO:0022402;cell cycle process;7.40416287271015e-27!GO:0051276;chromosome organization and biogenesis;1.71989559260242e-26!GO:0031966;mitochondrial membrane;3.06356842409472e-26!GO:0000278;mitotic cell cycle;2.87441491809251e-25!GO:0005743;mitochondrial inner membrane;5.9661509275241e-25!GO:0006281;DNA repair;8.0130733773076e-24!GO:0051301;cell division;1.11205734375219e-23!GO:0016462;pyrophosphatase activity;3.87803810696257e-23!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;5.6927707632119e-23!GO:0017111;nucleoside-triphosphatase activity;6.36568210569971e-23!GO:0016817;hydrolase activity, acting on acid anhydrides;8.6728794528838e-23!GO:0006119;oxidative phosphorylation;2.12855949342059e-22!GO:0005730;nucleolus;4.38363122790941e-22!GO:0031980;mitochondrial lumen;4.38363122790941e-22!GO:0005759;mitochondrial matrix;4.38363122790941e-22!GO:0044445;cytosolic part;5.12615244132944e-22!GO:0006325;establishment and/or maintenance of chromatin architecture;6.1099025412246e-22!GO:0044455;mitochondrial membrane part;7.22402962596986e-22!GO:0051649;establishment of cellular localization;1.38709933525051e-21!GO:0051641;cellular localization;2.38623682848813e-21!GO:0015935;small ribosomal subunit;2.78219543511866e-21!GO:0006323;DNA packaging;4.35293551761794e-21!GO:0008134;transcription factor binding;1.28259211450743e-20!GO:0006366;transcription from RNA polymerase II promoter;1.30061476301162e-20!GO:0022618;protein-RNA complex assembly;1.43716398385986e-20!GO:0019222;regulation of metabolic process;1.54537504800249e-20!GO:0006457;protein folding;2.52031681336127e-20!GO:0022403;cell cycle phase;2.97458601737585e-20!GO:0000087;M phase of mitotic cell cycle;4.76044543079386e-20!GO:0050794;regulation of cellular process;7.95805847232137e-20!GO:0007067;mitosis;1.51028670292763e-19!GO:0006350;transcription;2.77394537119667e-19!GO:0032553;ribonucleotide binding;3.51882092814751e-19!GO:0032555;purine ribonucleotide binding;3.51882092814751e-19!GO:0009719;response to endogenous stimulus;3.73346043676781e-19!GO:0015934;large ribosomal subunit;4.31916057475973e-19!GO:0006260;DNA replication;4.99681332451661e-19!GO:0016874;ligase activity;6.0415615455835e-19!GO:0006512;ubiquitin cycle;7.8927378677158e-19!GO:0017076;purine nucleotide binding;2.02210490229929e-18!GO:0031323;regulation of cellular metabolic process;5.80601118731411e-18!GO:0000279;M phase;6.36601671290592e-18!GO:0005746;mitochondrial respiratory chain;1.02102752666728e-17!GO:0004386;helicase activity;2.01432173645221e-17!GO:0008135;translation factor activity, nucleic acid binding;2.72790643271423e-17!GO:0003677;DNA binding;3.26930144770236e-17!GO:0042254;ribosome biogenesis and assembly;4.76440492506093e-17!GO:0000398;nuclear mRNA splicing, via spliceosome;1.19090854598202e-16!GO:0000375;RNA splicing, via transesterification reactions;1.19090854598202e-16!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;1.19090854598202e-16!GO:0044265;cellular macromolecule catabolic process;1.19534342826841e-16!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.31368709359551e-16!GO:0031965;nuclear membrane;1.35314582615136e-16!GO:0005761;mitochondrial ribosome;1.58743632323264e-16!GO:0000313;organellar ribosome;1.58743632323264e-16!GO:0010468;regulation of gene expression;1.71244224153046e-16!GO:0032774;RNA biosynthetic process;2.27395582232698e-16!GO:0000785;chromatin;3.18881248107917e-16!GO:0051603;proteolysis involved in cellular protein catabolic process;3.26145386113106e-16!GO:0005524;ATP binding;3.35168013416761e-16!GO:0006605;protein targeting;3.49181617549849e-16!GO:0006351;transcription, DNA-dependent;3.6319977919004e-16!GO:0006511;ubiquitin-dependent protein catabolic process;3.8912511068115e-16!GO:0032559;adenyl ribonucleotide binding;4.75309245583155e-16!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;5.08951645034581e-16!GO:0019941;modification-dependent protein catabolic process;5.10142116489239e-16!GO:0043632;modification-dependent macromolecule catabolic process;5.10142116489239e-16!GO:0044257;cellular protein catabolic process;1.03725423855923e-15!GO:0016887;ATPase activity;1.07019052756842e-15!GO:0050136;NADH dehydrogenase (quinone) activity;1.22287821160308e-15!GO:0003954;NADH dehydrogenase activity;1.22287821160308e-15!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.22287821160308e-15!GO:0042623;ATPase activity, coupled;2.95223150188124e-15!GO:0012505;endomembrane system;2.95935694913788e-15!GO:0030554;adenyl nucleotide binding;3.21065448483047e-15!GO:0016604;nuclear body;4.23730999190061e-15!GO:0065004;protein-DNA complex assembly;5.20565761212053e-15!GO:0005635;nuclear envelope;6.24399864703392e-15!GO:0006333;chromatin assembly or disassembly;6.593571620142e-15!GO:0044453;nuclear membrane part;7.92894600310319e-15!GO:0043285;biopolymer catabolic process;1.09803736268552e-14!GO:0008026;ATP-dependent helicase activity;1.16391758008986e-14!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);1.89781297747417e-14!GO:0045449;regulation of transcription;2.57364361142282e-14!GO:0000502;proteasome complex (sensu Eukaryota);4.0053468709493e-14!GO:0042775;organelle ATP synthesis coupled electron transport;4.5137213830513e-14!GO:0042773;ATP synthesis coupled electron transport;4.5137213830513e-14!GO:0050789;regulation of biological process;4.78694496426275e-14!GO:0006399;tRNA metabolic process;7.22165436324199e-14!GO:0015630;microtubule cytoskeleton;7.681581031188e-14!GO:0048770;pigment granule;1.01944831317722e-13!GO:0042470;melanosome;1.01944831317722e-13!GO:0009057;macromolecule catabolic process;1.28751299156027e-13!GO:0030964;NADH dehydrogenase complex (quinone);1.29171610019709e-13!GO:0045271;respiratory chain complex I;1.29171610019709e-13!GO:0005747;mitochondrial respiratory chain complex I;1.29171610019709e-13!GO:0016568;chromatin modification;2.18030674141949e-13!GO:0016607;nuclear speck;2.34852175269986e-13!GO:0003712;transcription cofactor activity;2.96261804359316e-13!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;4.00111380373967e-13!GO:0051082;unfolded protein binding;4.20693647967452e-13!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);4.36252161047974e-13!GO:0050657;nucleic acid transport;4.43567450685794e-13!GO:0051236;establishment of RNA localization;4.43567450685794e-13!GO:0050658;RNA transport;4.43567450685794e-13!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;4.75307423751499e-13!GO:0005783;endoplasmic reticulum;6.10684761024148e-13!GO:0005643;nuclear pore;6.10684761024148e-13!GO:0006355;regulation of transcription, DNA-dependent;6.87799145669107e-13!GO:0006913;nucleocytoplasmic transport;6.95937880084346e-13!GO:0051726;regulation of cell cycle;7.21692125727936e-13!GO:0006403;RNA localization;7.62233501382632e-13!GO:0000074;regulation of progression through cell cycle;7.8570914442456e-13!GO:0003743;translation initiation factor activity;7.8570914442456e-13!GO:0030163;protein catabolic process;9.24894615918738e-13!GO:0006413;translational initiation;1.05346878983497e-12!GO:0051169;nuclear transport;2.21051523591774e-12!GO:0065002;intracellular protein transport across a membrane;2.67019277901503e-12!GO:0005667;transcription factor complex;5.05046036350065e-12!GO:0044432;endoplasmic reticulum part;5.11887903293285e-12!GO:0006364;rRNA processing;6.33573965397913e-12!GO:0048193;Golgi vesicle transport;8.54328200306864e-12!GO:0016072;rRNA metabolic process;1.6326164566289e-11!GO:0006446;regulation of translational initiation;2.7416645386879e-11!GO:0006357;regulation of transcription from RNA polymerase II promoter;2.79968715108228e-11!GO:0008565;protein transporter activity;4.8600891547865e-11!GO:0051028;mRNA transport;5.49782483000104e-11!GO:0043412;biopolymer modification;5.50416710215354e-11!GO:0046930;pore complex;5.62342626055242e-11!GO:0051186;cofactor metabolic process;5.82903099178714e-11!GO:0044248;cellular catabolic process;6.08885673343725e-11!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;1.72964861787352e-10!GO:0009259;ribonucleotide metabolic process;2.6131991804221e-10!GO:0043566;structure-specific DNA binding;2.65783046206956e-10!GO:0006334;nucleosome assembly;4.25014866426746e-10!GO:0000775;chromosome, pericentric region;5.62483712526044e-10!GO:0006163;purine nucleotide metabolic process;6.78255706950496e-10!GO:0031497;chromatin assembly;7.35718804000034e-10!GO:0003682;chromatin binding;9.64785770294625e-10!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;1.04987054833118e-09!GO:0017038;protein import;1.13054596762294e-09!GO:0045333;cellular respiration;1.98500047845827e-09!GO:0006164;purine nucleotide biosynthetic process;2.06714615267983e-09!GO:0006261;DNA-dependent DNA replication;2.09022542631882e-09!GO:0009260;ribonucleotide biosynthetic process;2.30559274340892e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;2.31005212159826e-09!GO:0005794;Golgi apparatus;3.49254070439646e-09!GO:0009150;purine ribonucleotide metabolic process;3.69911779230361e-09!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;3.92316215842961e-09!GO:0009060;aerobic respiration;4.70531044184758e-09!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;5.60135185615706e-09!GO:0004812;aminoacyl-tRNA ligase activity;5.60135185615706e-09!GO:0016875;ligase activity, forming carbon-oxygen bonds;5.60135185615706e-09!GO:0003697;single-stranded DNA binding;7.03549883758089e-09!GO:0006464;protein modification process;8.02209426523438e-09!GO:0016879;ligase activity, forming carbon-nitrogen bonds;1.02894144326136e-08!GO:0006732;coenzyme metabolic process;1.1001119756334e-08!GO:0009152;purine ribonucleotide biosynthetic process;1.11734971294311e-08!GO:0008639;small protein conjugating enzyme activity;1.1377895612607e-08!GO:0016563;transcription activator activity;1.16105431481336e-08!GO:0043038;amino acid activation;1.30379086156461e-08!GO:0006418;tRNA aminoacylation for protein translation;1.30379086156461e-08!GO:0043039;tRNA aminoacylation;1.30379086156461e-08!GO:0005819;spindle;1.38049680250699e-08!GO:0009055;electron carrier activity;1.48988885426821e-08!GO:0005813;centrosome;1.79597598730429e-08!GO:0006461;protein complex assembly;1.81225598078864e-08!GO:0031324;negative regulation of cellular metabolic process;1.9481731953761e-08!GO:0043687;post-translational protein modification;1.9481731953761e-08!GO:0009199;ribonucleoside triphosphate metabolic process;2.02528741765517e-08!GO:0004842;ubiquitin-protein ligase activity;2.02862774456485e-08!GO:0009141;nucleoside triphosphate metabolic process;2.47668091640688e-08!GO:0009142;nucleoside triphosphate biosynthetic process;2.5896472570813e-08!GO:0009201;ribonucleoside triphosphate biosynthetic process;2.5896472570813e-08!GO:0019787;small conjugating protein ligase activity;2.64676452204167e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;2.69191590412192e-08!GO:0016779;nucleotidyltransferase activity;2.77480517771699e-08!GO:0007005;mitochondrion organization and biogenesis;3.24663306903317e-08!GO:0003702;RNA polymerase II transcription factor activity;3.31699149729887e-08!GO:0009205;purine ribonucleoside triphosphate metabolic process;3.70192070413068e-08!GO:0009144;purine nucleoside triphosphate metabolic process;3.70192070413068e-08!GO:0042175;nuclear envelope-endoplasmic reticulum network;3.73008167366698e-08!GO:0016481;negative regulation of transcription;4.42636938436705e-08!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;4.85850042522631e-08!GO:0009145;purine nucleoside triphosphate biosynthetic process;4.85850042522631e-08!GO:0007051;spindle organization and biogenesis;5.44821614264268e-08!GO:0005789;endoplasmic reticulum membrane;5.87526488563691e-08!GO:0005815;microtubule organizing center;6.30180477093682e-08!GO:0015078;hydrogen ion transmembrane transporter activity;6.89822524751299e-08!GO:0030532;small nuclear ribonucleoprotein complex;7.40253115366337e-08!GO:0015986;ATP synthesis coupled proton transport;8.10917554462369e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;8.10917554462369e-08!GO:0003899;DNA-directed RNA polymerase activity;8.17924779237875e-08!GO:0065007;biological regulation;8.2641309569796e-08!GO:0000245;spliceosome assembly;1.07538132317972e-07!GO:0006099;tricarboxylic acid cycle;1.38403204758276e-07!GO:0046356;acetyl-CoA catabolic process;1.38403204758276e-07!GO:0016564;transcription repressor activity;1.61714908477809e-07!GO:0016192;vesicle-mediated transport;1.84730257020738e-07!GO:0019829;cation-transporting ATPase activity;2.00961464843335e-07!GO:0009892;negative regulation of metabolic process;2.0769644686259e-07!GO:0006084;acetyl-CoA metabolic process;2.77746533410102e-07!GO:0016881;acid-amino acid ligase activity;2.7848466881458e-07!GO:0003713;transcription coactivator activity;3.11441554039637e-07!GO:0008094;DNA-dependent ATPase activity;3.24173958399723e-07!GO:0003724;RNA helicase activity;3.38337788218828e-07!GO:0051329;interphase of mitotic cell cycle;3.48439242188689e-07!GO:0031202;RNA splicing factor activity, transesterification mechanism;3.51474015042679e-07!GO:0043623;cellular protein complex assembly;4.28053780331541e-07!GO:0005874;microtubule;4.4958713303249e-07!GO:0032446;protein modification by small protein conjugation;4.92180076758945e-07!GO:0048523;negative regulation of cellular process;5.34606012962684e-07!GO:0000075;cell cycle checkpoint;5.90045823781067e-07!GO:0006606;protein import into nucleus;6.85686022885128e-07!GO:0006888;ER to Golgi vesicle-mediated transport;6.88987223905092e-07!GO:0051170;nuclear import;8.30079523583386e-07!GO:0046034;ATP metabolic process;8.55905333899141e-07!GO:0016853;isomerase activity;9.1744173250152e-07!GO:0009109;coenzyme catabolic process;9.61796347644976e-07!GO:0006754;ATP biosynthetic process;1.01253865128668e-06!GO:0006753;nucleoside phosphate metabolic process;1.01253865128668e-06!GO:0016567;protein ubiquitination;1.04297475137054e-06!GO:0016469;proton-transporting two-sector ATPase complex;1.3360067969249e-06!GO:0045259;proton-transporting ATP synthase complex;1.60223311190886e-06!GO:0016363;nuclear matrix;1.71665626008713e-06!GO:0005788;endoplasmic reticulum lumen;1.73927425423401e-06!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;1.74845530325921e-06!GO:0008033;tRNA processing;2.50658379547877e-06!GO:0051325;interphase;3.15062314098982e-06!GO:0016859;cis-trans isomerase activity;3.23267815471732e-06!GO:0000151;ubiquitin ligase complex;3.27243508444199e-06!GO:0051187;cofactor catabolic process;3.41514636992333e-06!GO:0007017;microtubule-based process;3.91415306834643e-06!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;4.41570168530633e-06!GO:0051427;hormone receptor binding;4.60485315533228e-06!GO:0044452;nucleolar part;4.78222865175761e-06!GO:0005762;mitochondrial large ribosomal subunit;4.8824800215422e-06!GO:0000315;organellar large ribosomal subunit;4.8824800215422e-06!GO:0006613;cotranslational protein targeting to membrane;6.18346308361133e-06!GO:0005657;replication fork;6.24114994135079e-06!GO:0051168;nuclear export;6.65446555936194e-06!GO:0051052;regulation of DNA metabolic process;6.85404566877779e-06!GO:0000776;kinetochore;7.0549434087954e-06!GO:0006302;double-strand break repair;8.17162074045749e-06!GO:0045786;negative regulation of progression through cell cycle;8.46434454258439e-06!GO:0016740;transferase activity;8.91713385290193e-06!GO:0015077;monovalent inorganic cation transmembrane transporter activity;9.0000549588661e-06!GO:0003924;GTPase activity;9.18354414558878e-06!GO:0035257;nuclear hormone receptor binding;1.00220983279679e-05!GO:0003714;transcription corepressor activity;1.08398621695513e-05!GO:0000314;organellar small ribosomal subunit;1.10680707614881e-05!GO:0005763;mitochondrial small ribosomal subunit;1.10680707614881e-05!GO:0006626;protein targeting to mitochondrion;1.36429618939957e-05!GO:0006352;transcription initiation;1.46309511656557e-05!GO:0051188;cofactor biosynthetic process;1.57682574277526e-05!GO:0006839;mitochondrial transport;1.86838876593969e-05!GO:0048519;negative regulation of biological process;1.88290722662838e-05!GO:0008186;RNA-dependent ATPase activity;1.9359889230093e-05!GO:0009056;catabolic process;2.03734817595309e-05!GO:0003690;double-stranded DNA binding;2.33136337570691e-05!GO:0003678;DNA helicase activity;2.33396009155069e-05!GO:0048475;coated membrane;2.40236557409255e-05!GO:0030117;membrane coat;2.40236557409255e-05!GO:0000786;nucleosome;2.51921174328762e-05!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;2.58159388568612e-05!GO:0008654;phospholipid biosynthetic process;2.63258682580569e-05!GO:0030120;vesicle coat;2.639498015061e-05!GO:0030662;coated vesicle membrane;2.639498015061e-05!GO:0044440;endosomal part;2.639498015061e-05!GO:0010008;endosome membrane;2.639498015061e-05!GO:0005525;GTP binding;2.87889337777842e-05!GO:0005768;endosome;2.9154598541565e-05!GO:0009117;nucleotide metabolic process;3.00924986891482e-05!GO:0016251;general RNA polymerase II transcription factor activity;3.06714996869187e-05!GO:0043021;ribonucleoprotein binding;3.25778759462788e-05!GO:0003684;damaged DNA binding;3.61055178281181e-05!GO:0045454;cell redox homeostasis;4.50121404000391e-05!GO:0045892;negative regulation of transcription, DNA-dependent;4.60030978255523e-05!GO:0006752;group transfer coenzyme metabolic process;4.72265032548967e-05!GO:0005793;ER-Golgi intermediate compartment;5.66396803434387e-05!GO:0003729;mRNA binding;5.80125838640146e-05!GO:0004004;ATP-dependent RNA helicase activity;6.07121751851092e-05!GO:0006310;DNA recombination;6.67811646254125e-05!GO:0005839;proteasome core complex (sensu Eukaryota);7.36201035137476e-05!GO:0000228;nuclear chromosome;8.8684952344722e-05!GO:0007052;mitotic spindle organization and biogenesis;9.83319902626473e-05!GO:0030880;RNA polymerase complex;9.95286719011942e-05!GO:0006414;translational elongation;0.000100679192801862!GO:0000792;heterochromatin;0.000106058399395854!GO:0007059;chromosome segregation;0.000106158532509533!GO:0012501;programmed cell death;0.00011856386791086!GO:0006383;transcription from RNA polymerase III promoter;0.000129743036905057!GO:0007010;cytoskeleton organization and biogenesis;0.000156790837199241!GO:0006915;apoptosis;0.000159703748188963!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.000159703748188963!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.000168374418079084!GO:0007006;mitochondrial membrane organization and biogenesis;0.000172921000121006!GO:0043681;protein import into mitochondrion;0.000173067394776006!GO:0008168;methyltransferase activity;0.000173232994965471!GO:0006402;mRNA catabolic process;0.00019104108933353!GO:0016741;transferase activity, transferring one-carbon groups;0.000191362370140574!GO:0004298;threonine endopeptidase activity;0.000214339751725164!GO:0051246;regulation of protein metabolic process;0.000216726891722284!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.000236140939849324!GO:0007093;mitotic cell cycle checkpoint;0.000238464135150741!GO:0006338;chromatin remodeling;0.000239192738785255!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00025432851619272!GO:0000428;DNA-directed RNA polymerase complex;0.00025432851619272!GO:0009108;coenzyme biosynthetic process;0.000266638214955695!GO:0005798;Golgi-associated vesicle;0.000266638214955695!GO:0000059;protein import into nucleus, docking;0.000271262297894505!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000365744312304456!GO:0044431;Golgi apparatus part;0.000369813001179985!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000369920776362793!GO:0032561;guanyl ribonucleotide binding;0.000385476545294583!GO:0019001;guanyl nucleotide binding;0.000385476545294583!GO:0006612;protein targeting to membrane;0.000387373106472059!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000408458820586852!GO:0008250;oligosaccharyl transferase complex;0.000426236131858971!GO:0005684;U2-dependent spliceosome;0.000426236131858971!GO:0008219;cell death;0.000456246436428575!GO:0016265;death;0.000456246436428575!GO:0045941;positive regulation of transcription;0.000478539179845449!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000484967666612909!GO:0015631;tubulin binding;0.000493376902235493!GO:0005876;spindle microtubule;0.000579910934245072!GO:0005770;late endosome;0.000581983659084083!GO:0007088;regulation of mitosis;0.0005856204207183!GO:0051920;peroxiredoxin activity;0.000591373381479884!GO:0006401;RNA catabolic process;0.000593195207178774!GO:0000910;cytokinesis;0.000659717952518928!GO:0046474;glycerophospholipid biosynthetic process;0.000695093388069665!GO:0031124;mRNA 3'-end processing;0.000695093388069665!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.000719207584900476!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00072342006350497!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00072342006350497!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00072342006350497!GO:0045893;positive regulation of transcription, DNA-dependent;0.00072342006350497!GO:0005852;eukaryotic translation initiation factor 3 complex;0.000757934479261493!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00076028822611064!GO:0005905;coated pit;0.00076802942536165!GO:0006275;regulation of DNA replication;0.000818032505306868!GO:0006405;RNA export from nucleus;0.000833937258491425!GO:0016281;eukaryotic translation initiation factor 4F complex;0.000839830674329248!GO:0000082;G1/S transition of mitotic cell cycle;0.000859258654838025!GO:0032508;DNA duplex unwinding;0.000867567583129216!GO:0032392;DNA geometric change;0.000867567583129216!GO:0015980;energy derivation by oxidation of organic compounds;0.000902641303297037!GO:0006793;phosphorus metabolic process;0.000921493434443004!GO:0006796;phosphate metabolic process;0.000921493434443004!GO:0000922;spindle pole;0.000923654638719883!GO:0005885;Arp2/3 protein complex;0.000957971490943332!GO:0030867;rough endoplasmic reticulum membrane;0.00114550274716276!GO:0004576;oligosaccharyl transferase activity;0.00114631200009699!GO:0016310;phosphorylation;0.00123405466882356!GO:0006891;intra-Golgi vesicle-mediated transport;0.00123405466882356!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00125355670826884!GO:0005048;signal sequence binding;0.00131437119104548!GO:0004527;exonuclease activity;0.0013585544703974!GO:0051087;chaperone binding;0.00145248083688044!GO:0005637;nuclear inner membrane;0.00153421176924848!GO:0016126;sterol biosynthetic process;0.00154622220731298!GO:0048500;signal recognition particle;0.00156156967114883!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00172805293082505!GO:0015002;heme-copper terminal oxidase activity;0.00172805293082505!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00172805293082505!GO:0004129;cytochrome-c oxidase activity;0.00172805293082505!GO:0051789;response to protein stimulus;0.00184762847808578!GO:0006986;response to unfolded protein;0.00184762847808578!GO:0006916;anti-apoptosis;0.0019453195648158!GO:0003746;translation elongation factor activity;0.00195513689593762!GO:0031123;RNA 3'-end processing;0.00201065334736244!GO:0043624;cellular protein complex disassembly;0.00201845135219113!GO:0009165;nucleotide biosynthetic process;0.00206357547891221!GO:0006289;nucleotide-excision repair;0.00210219561324519!GO:0032200;telomere organization and biogenesis;0.00219851171665679!GO:0000723;telomere maintenance;0.00219851171665679!GO:0031252;leading edge;0.00219887931573055!GO:0006268;DNA unwinding during replication;0.00228724846169313!GO:0030521;androgen receptor signaling pathway;0.0023783529754562!GO:0008312;7S RNA binding;0.00259581222285532!GO:0030176;integral to endoplasmic reticulum membrane;0.00274232595843013!GO:0048471;perinuclear region of cytoplasm;0.00284242914206995!GO:0004003;ATP-dependent DNA helicase activity;0.00288220716640306!GO:0044454;nuclear chromosome part;0.00298481951128341!GO:0000049;tRNA binding;0.00298630148187756!GO:0046489;phosphoinositide biosynthetic process;0.00298630148187756!GO:0006378;mRNA polyadenylation;0.00324261794001521!GO:0003711;transcription elongation regulator activity;0.00324261794001521!GO:0051098;regulation of binding;0.00324261794001521!GO:0006367;transcription initiation from RNA polymerase II promoter;0.00324261794001521!GO:0051252;regulation of RNA metabolic process;0.00325634149395969!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.00327005544912663!GO:0018196;peptidyl-asparagine modification;0.00336385475049774!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00336385475049774!GO:0004518;nuclease activity;0.00338089831546029!GO:0048487;beta-tubulin binding;0.00338089831546029!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0033877421885979!GO:0045047;protein targeting to ER;0.0033877421885979!GO:0032259;methylation;0.00345905449958068!GO:0019843;rRNA binding;0.00346438315761596!GO:0006144;purine base metabolic process;0.00351899928635325!GO:0031968;organelle outer membrane;0.00357220093772662!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.00367867720080592!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00367867720080592!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00367867720080592!GO:0032984;macromolecular complex disassembly;0.00380638655610226!GO:0008022;protein C-terminus binding;0.00384817245813896!GO:0019867;outer membrane;0.00398619114128655!GO:0016584;nucleosome positioning;0.00399020979347735!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00402039471915199!GO:0015992;proton transport;0.00415170758441585!GO:0005791;rough endoplasmic reticulum;0.00421560452156947!GO:0031072;heat shock protein binding;0.00421560452156947!GO:0006695;cholesterol biosynthetic process;0.00440296161717099!GO:0000790;nuclear chromatin;0.00446162968785474!GO:0006818;hydrogen transport;0.00471766581058543!GO:0040029;regulation of gene expression, epigenetic;0.00478711661741297!GO:0043414;biopolymer methylation;0.00482005528981667!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00508069165560061!GO:0015399;primary active transmembrane transporter activity;0.00508069165560061!GO:0006611;protein export from nucleus;0.00510188848934771!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;0.00564721713673683!GO:0042393;histone binding;0.00590795857073981!GO:0008139;nuclear localization sequence binding;0.00615007420304986!GO:0016787;hydrolase activity;0.00616986999507732!GO:0000725;recombinational repair;0.00618928263008137!GO:0000724;double-strand break repair via homologous recombination;0.00618928263008137!GO:0030663;COPI coated vesicle membrane;0.00620536950332153!GO:0030126;COPI vesicle coat;0.00620536950332153!GO:0005741;mitochondrial outer membrane;0.00635063364266526!GO:0006400;tRNA modification;0.00643380326900965!GO:0031570;DNA integrity checkpoint;0.00658126495077889!GO:0043241;protein complex disassembly;0.00677969909510411!GO:0043069;negative regulation of programmed cell death;0.00692025517597665!GO:0035258;steroid hormone receptor binding;0.00700347054643786!GO:0005665;DNA-directed RNA polymerase II, core complex;0.00702416256807937!GO:0005758;mitochondrial intermembrane space;0.0070473098410288!GO:0000139;Golgi membrane;0.00725460326448864!GO:0000819;sister chromatid segregation;0.00725460326448864!GO:0006284;base-excision repair;0.00730629759171747!GO:0033116;ER-Golgi intermediate compartment membrane;0.00744685709503!GO:0006595;polyamine metabolic process;0.00752799973915554!GO:0008276;protein methyltransferase activity;0.00767012401270517!GO:0042981;regulation of apoptosis;0.00767534130206871!GO:0031988;membrane-bound vesicle;0.0077517854973013!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.00794226937748944!GO:0005769;early endosome;0.0079672592164856!GO:0046966;thyroid hormone receptor binding;0.00810691177957762!GO:0043066;negative regulation of apoptosis;0.00817995718077273!GO:0006360;transcription from RNA polymerase I promoter;0.00818076777850136!GO:0046467;membrane lipid biosynthetic process;0.00818215856714392!GO:0000070;mitotic sister chromatid segregation;0.00834820691849775!GO:0005832;chaperonin-containing T-complex;0.00848170562327168!GO:0016272;prefoldin complex;0.00876019319705623!GO:0006091;generation of precursor metabolites and energy;0.00907655308491585!GO:0006220;pyrimidine nucleotide metabolic process;0.00916267046391824!GO:0022890;inorganic cation transmembrane transporter activity;0.00920611037961266!GO:0043488;regulation of mRNA stability;0.00924581534298386!GO:0043487;regulation of RNA stability;0.00924581534298386!GO:0007021;tubulin folding;0.00931024346169251!GO:0043067;regulation of programmed cell death;0.00933980606320112!GO:0000178;exosome (RNase complex);0.00935298501676834!GO:0005669;transcription factor TFIID complex;0.0095609336999173!GO:0000339;RNA cap binding;0.00960786195516805!GO:0031982;vesicle;0.00969275447130248!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00974206723258018!GO:0019899;enzyme binding;0.00981725829059738!GO:0009303;rRNA transcription;0.00996573257729434!GO:0009451;RNA modification;0.0100839663159568!GO:0030137;COPI-coated vesicle;0.0104164090893682!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.0106360915098487!GO:0016023;cytoplasmic membrane-bound vesicle;0.0106870268584623!GO:0008017;microtubule binding;0.0107172075650483!GO:0005875;microtubule associated complex;0.0109770847975345!GO:0030518;steroid hormone receptor signaling pathway;0.0112137642815811!GO:0016891;endoribonuclease activity, producing 5'-phosphomonoesters;0.011384567172477!GO:0022884;macromolecule transmembrane transporter activity;0.0116653912050241!GO:0015450;P-P-bond-hydrolysis-driven protein transmembrane transporter activity;0.0116653912050241!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0118269433211406!GO:0031902;late endosome membrane;0.0118668592016642!GO:0030027;lamellipodium;0.0118668592016642!GO:0005720;nuclear heterochromatin;0.0120837830293132!GO:0005869;dynactin complex;0.0121035127470597!GO:0043022;ribosome binding;0.0122068219892888!GO:0008320;protein transmembrane transporter activity;0.0131298427639647!GO:0000781;chromosome, telomeric region;0.013273871071131!GO:0030134;ER to Golgi transport vesicle;0.0133015315918408!GO:0016491;oxidoreductase activity;0.0136177797599508!GO:0000209;protein polyubiquitination;0.0136542548102692!GO:0031410;cytoplasmic vesicle;0.0138906263512743!GO:0009112;nucleobase metabolic process;0.0141649693250749!GO:0043631;RNA polyadenylation;0.0148985856626496!GO:0006607;NLS-bearing substrate import into nucleus;0.0149942783611406!GO:0051539;4 iron, 4 sulfur cluster binding;0.0150587797784926!GO:0043596;nuclear replication fork;0.0154445791811359!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0154782773598012!GO:0000077;DNA damage checkpoint;0.0155841187592679!GO:0016585;chromatin remodeling complex;0.0155884337741132!GO:0000123;histone acetyltransferase complex;0.0156939857602143!GO:0042770;DNA damage response, signal transduction;0.0159620051244939!GO:0008408;3'-5' exonuclease activity;0.016457266459874!GO:0022411;cellular component disassembly;0.0170131603720011!GO:0004532;exoribonuclease activity;0.0174348676616348!GO:0016896;exoribonuclease activity, producing 5'-phosphomonoesters;0.0174348676616348!GO:0031577;spindle checkpoint;0.0174698079012692!GO:0043284;biopolymer biosynthetic process;0.0176005219090683!GO:0000726;non-recombinational repair;0.0177798143285932!GO:0016569;covalent chromatin modification;0.0177896916233544!GO:0005853;eukaryotic translation elongation factor 1 complex;0.0178653835312083!GO:0035267;NuA4 histone acetyltransferase complex;0.0179572543108969!GO:0031970;organelle envelope lumen;0.0181519608370573!GO:0006356;regulation of transcription from RNA polymerase I promoter;0.0184942382167458!GO:0043189;H4/H2A histone acetyltransferase complex;0.0191254895950108!GO:0006497;protein amino acid lipidation;0.0191940616327055!GO:0030384;phosphoinositide metabolic process;0.0193179367962159!GO:0051053;negative regulation of DNA metabolic process;0.0194073724743335!GO:0016893;endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.0194088757529364!GO:0042158;lipoprotein biosynthetic process;0.0194451681424785!GO:0016044;membrane organization and biogenesis;0.0194731777968705!GO:0006650;glycerophospholipid metabolic process;0.0198312127531154!GO:0006740;NADPH regeneration;0.0205271976425034!GO:0006098;pentose-phosphate shunt;0.0205271976425034!GO:0006270;DNA replication initiation;0.0205477205994124!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0210815929908158!GO:0010257;NADH dehydrogenase complex assembly;0.0210815929908158!GO:0033108;mitochondrial respiratory chain complex assembly;0.0210815929908158!GO:0000152;nuclear ubiquitin ligase complex;0.0211529187172825!GO:0046982;protein heterodimerization activity;0.0211692103603201!GO:0016407;acetyltransferase activity;0.0213824786828087!GO:0006541;glutamine metabolic process;0.021981930588265!GO:0047485;protein N-terminus binding;0.0222663620108655!GO:0008180;signalosome;0.0226800953105425!GO:0030118;clathrin coat;0.0227445494719371!GO:0065009;regulation of a molecular function;0.0227499305783205!GO:0031625;ubiquitin protein ligase binding;0.0237680082356295!GO:0007004;telomere maintenance via telomerase;0.0240016843297141!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0240283569602394!GO:0005862;muscle thin filament tropomyosin;0.0242229395076362!GO:0030658;transport vesicle membrane;0.0242739020630593!GO:0001832;blastocyst growth;0.024374179914595!GO:0030522;intracellular receptor-mediated signaling pathway;0.0246361303966575!GO:0051287;NAD binding;0.0246838913066413!GO:0042026;protein refolding;0.0257289486273556!GO:0030127;COPII vesicle coat;0.0258983334765052!GO:0012507;ER to Golgi transport vesicle membrane;0.0258983334765052!GO:0044262;cellular carbohydrate metabolic process;0.026266347756062!GO:0051540;metal cluster binding;0.0268539300680959!GO:0051536;iron-sulfur cluster binding;0.0268539300680959!GO:0005773;vacuole;0.0275242630519067!GO:0006007;glucose catabolic process;0.0287465165277192!GO:0042809;vitamin D receptor binding;0.0290961220539706!GO:0030330;DNA damage response, signal transduction by p53 class mediator;0.0294057744052227!GO:0000096;sulfur amino acid metabolic process;0.029667019469798!GO:0019783;small conjugating protein-specific protease activity;0.0302325113617414!GO:0042719;mitochondrial intermembrane space protein transporter complex;0.0302924538917923!GO:0045039;protein import into mitochondrial inner membrane;0.0302924538917923!GO:0005663;DNA replication factor C complex;0.0302924538917923!GO:0031371;ubiquitin conjugating enzyme complex;0.031575055317298!GO:0030374;ligand-dependent nuclear receptor transcription coactivator activity;0.0317484941834903!GO:0030132;clathrin coat of coated pit;0.0318742953819304!GO:0043130;ubiquitin binding;0.0318742953819304!GO:0032182;small conjugating protein binding;0.0318742953819304!GO:0008538;proteasome activator activity;0.0326921929998248!GO:0042802;identical protein binding;0.0332483934746601!GO:0006221;pyrimidine nucleotide biosynthetic process;0.0334034371554804!GO:0006730;one-carbon compound metabolic process;0.0335049513572272!GO:0005784;translocon complex;0.0338641616681043!GO:0016408;C-acyltransferase activity;0.0339420753470545!GO:0045947;negative regulation of translational initiation;0.0339945151354534!GO:0008536;Ran GTPase binding;0.0340197027364642!GO:0006506;GPI anchor biosynthetic process;0.0344655866513799!GO:0003857;3-hydroxyacyl-CoA dehydrogenase activity;0.0346574871796332!GO:0007050;cell cycle arrest;0.0349580142630833!GO:0043601;nuclear replisome;0.0354142098430358!GO:0030894;replisome;0.0354142098430358!GO:0004674;protein serine/threonine kinase activity;0.035766754696381!GO:0048522;positive regulation of cellular process;0.0357817828851938!GO:0006376;mRNA splice site selection;0.0358986395522125!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0358986395522125!GO:0003727;single-stranded RNA binding;0.0360470242704408!GO:0004843;ubiquitin-specific protease activity;0.0362370617382601!GO:0048468;cell development;0.0379760694327507!GO:0009124;nucleoside monophosphate biosynthetic process;0.0379818490180359!GO:0009123;nucleoside monophosphate metabolic process;0.0379818490180359!GO:0003756;protein disulfide isomerase activity;0.0387457608988857!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0387457608988857!GO:0008097;5S rRNA binding;0.0389189164019292!GO:0004221;ubiquitin thiolesterase activity;0.0392621239172685!GO:0008361;regulation of cell size;0.0397049528219833!GO:0051128;regulation of cellular component organization and biogenesis;0.0397106780559912!GO:0050178;phenylpyruvate tautomerase activity;0.0397106780559912!GO:0006505;GPI anchor metabolic process;0.0398879413732267!GO:0006301;postreplication repair;0.0398879413732267!GO:0031647;regulation of protein stability;0.0400032838506592!GO:0005850;eukaryotic translation initiation factor 2 complex;0.0401821032969324!GO:0016790;thiolester hydrolase activity;0.0403776417523179!GO:0009116;nucleoside metabolic process;0.0406395559319272!GO:0050662;coenzyme binding;0.0411234531258067!GO:0008415;acyltransferase activity;0.0411752956113721!GO:0006406;mRNA export from nucleus;0.0411752956113721!GO:0004300;enoyl-CoA hydratase activity;0.0414246001478986!GO:0016796;exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.0416967158503083!GO:0007264;small GTPase mediated signal transduction;0.0418919340821216!GO:0004549;tRNA-specific ribonuclease activity;0.0418919340821216!GO:0042054;histone methyltransferase activity;0.0419806601605796!GO:0001824;blastocyst development;0.0420306972538499!GO:0000086;G2/M transition of mitotic cell cycle;0.0420306972538499!GO:0000805;X chromosome;0.0421988671122691!GO:0001740;Barr body;0.0421988671122691!GO:0006278;RNA-dependent DNA replication;0.0442049977037779!GO:0030508;thiol-disulfide exchange intermediate activity;0.0447762391944828!GO:0030911;TPR domain binding;0.0457496238622457!GO:0032039;integrator complex;0.0460243326749203!GO:0016747;transferase activity, transferring groups other than amino-acyl groups;0.0463333436900311!GO:0000793;condensed chromosome;0.0463734950977644!GO:0030496;midbody;0.0472768387679158!GO:0007094;mitotic cell cycle spindle assembly checkpoint;0.0474075590755345!GO:0005732;small nucleolar ribonucleoprotein complex;0.0480923121592519!GO:0000119;mediator complex;0.0497829062987022
|sample_id=10441
|sample_note=
|sample_sex=unknown
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_tissue=synovium
|top_motifs=NKX6-1,2:2.56829931178;TFDP1:2.18719851224;FOXQ1:2.11425972561;NKX2-1,4:2.02598149677;FOXD3:1.94954860304;VSX1,2:1.92993048244;ZNF384:1.92503934981;PITX1..3:1.73891318031;PAX4:1.70674749246;TEF:1.67073572241;GFI1:1.66123476461;MZF1:1.65348174879;NFY{A,B,C}:1.62727441557;LEF1_TCF7_TCF7L1,2:1.60898298197;IKZF2:1.59885639915;FOXP1:1.57727678688;RBPJ:1.51003080839;E2F1..5:1.47594438891;PRRX1,2:1.44272882658;GATA4:1.40305221864;BPTF:1.34862105877;AIRE:1.33733092223;POU1F1:1.28198198996;RREB1:1.22869247024;PATZ1:1.14265680027;BREu{core}:1.11336958369;NRF1:1.11016734091;LHX3,4:1.10980970712;CDX1,2,4:1.07493627579;DBP:1.05364138911;ZNF143:1.05061147942;FOXM1:1.00631337608;ZIC1..3:0.984559028876;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.979062692051;SOX{8,9,10}:0.976953708274;TOPORS:0.966220068537;ELK1,4_GABP{A,B1}:0.902555889583;NR6A1:0.886010235888;PAX8:0.866406037683;ADNP_IRX_SIX_ZHX:0.865258286908;NKX2-3_NKX2-5:0.863040448603;ONECUT1,2:0.830041454246;NKX3-2:0.799246933026;AHR_ARNT_ARNT2:0.787264854661;NR5A1,2:0.762400635775;CRX:0.761686481559;POU6F1:0.754789503412;MTE{core}:0.750310517546;MED-1{core}:0.741702059768;SOX17:0.72998543005;CUX2:0.708317807006;HOXA9_MEIS1:0.705527273367;FOX{I1,J2}:0.699992848733;PAX1,9:0.681303871107;RORA:0.632224756549;POU2F1..3:0.630537168208;HIC1:0.617659113934;PDX1:0.615364331153;PBX1:0.604920440378;SOX5:0.602020233918;KLF4:0.584869372192;HMGA1,2:0.575202499141;ATF4:0.570902934703;ARID5B:0.539772192306;OCT4_SOX2{dimer}:0.536576783298;HOX{A4,D4}:0.527928535398;ZBTB16:0.522439346411;STAT5{A,B}:0.510485066929;MYB:0.509115472192;MYBL2:0.501924308162;GTF2A1,2:0.496152488966;CDC5L:0.454153188124;EGR1..3:0.418967113941;HOX{A6,A7,B6,B7}:0.417204825246;FOXA2:0.416398679785;T:0.379263657416;EVI1:0.378978485575;HSF1,2:0.373554837991;FOXN1:0.340380866062;YY1:0.321629220843;GTF2I:0.311620449703;bHLH_family:0.308631662596;SP1:0.297777609254;RFX1:0.297230873004;HBP1_HMGB_SSRP1_UBTF:0.294216461332;GFI1B:0.281339650874;TFAP2B:0.244247635496;TEAD1:0.231047571755;EN1,2:0.219133356211;POU3F1..4:0.184851665642;PAX3,7:0.172130466688;RFX2..5_RFXANK_RFXAP:0.144850028698;HOX{A5,B5}:0.11499517455;FOXP3:0.104535625392;UFEwm:0.0652968955285;MAZ:0.0553825564145;SREBF1,2:0.0230928575;DMAP1_NCOR{1,2}_SMARC:0.00171282458261;ZBTB6:-0.012951613825;HAND1,2:-0.0306332220939;PRDM1:-0.0346735081386;SOX2:-0.0417641567684;PAX6:-0.0616867313056;ZNF238:-0.0731521227598;RXR{A,B,G}:-0.0869543185205;ATF5_CREB3:-0.094255758447;CREB1:-0.0955163702556;ALX1:-0.0991482588148;POU5F1:-0.10935643568;NKX3-1:-0.132858501246;ZFP161:-0.133731625298;HIF1A:-0.140970191378;TFAP4:-0.147142245526;ATF6:-0.156965500582;HNF1A:-0.162407775089;HNF4A_NR2F1,2:-0.182121490017;MTF1:-0.192744805411;TLX2:-0.192866952578;GATA6:-0.197350353843;NR3C1:-0.239216470059;FOX{F1,F2,J1}:-0.248728588758;XBP1:-0.259662477306;PPARG:-0.264541486127;FOXL1:-0.266331552701;NKX2-2,8:-0.281325837879;NANOG{mouse}:-0.282102982909;FOX{D1,D2}:-0.291687838086;EBF1:-0.299134582346;REST:-0.301852265512;NFIX:-0.302622124629;MEF2{A,B,C,D}:-0.321012220482;TAL1_TCF{3,4,12}:-0.340276900608;ALX4:-0.340558768587;TGIF1:-0.353244213428;TFAP2{A,C}:-0.365946009119;JUN:-0.382568778355;PAX5:-0.397480521413;RUNX1..3:-0.402366262547;ELF1,2,4:-0.415479422723;SNAI1..3:-0.432991696601;MYFfamily:-0.452676505749;FOXO1,3,4:-0.463585584707;TP53:-0.481396362839;IKZF1:-0.495157785838;AR:-0.499461432307;SPIB:-0.50359607722;SRF:-0.511124029467;ATF2:-0.512587149738;ZEB1:-0.548770843455;PAX2:-0.559188278582;XCPE1{core}:-0.577970478467;GCM1,2:-0.586719621204;SPI1:-0.597469357522;TLX1..3_NFIC{dimer}:-0.606778053147;NANOG:-0.642119335743;FOS_FOS{B,L1}_JUN{B,D}:-0.643011548523;NFKB1_REL_RELA:-0.668012506409;NR1H4:-0.679945330847;HMX1:-0.685196264423;NFATC1..3:-0.690420552556;HLF:-0.71285348441;FOSL2:-0.790604260234;BACH2:-0.797197364487;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.813785655057;NFE2:-0.833190760155;IRF7:-0.850490749963;TBP:-0.854413941834;GZF1:-0.86322206684;SMAD1..7,9:-0.879850884368;TBX4,5:-0.892328294311;STAT1,3:-0.918392779012;NHLH1,2:-0.921685690789;IRF1,2:-0.932195166521;CEBPA,B_DDIT3:-0.945712162591;NFIL3:-0.99537970283;NFE2L2:-1.00009190109;ETS1,2:-1.00302626234;NFE2L1:-1.02162457024;SPZ1:-1.02418526288;ESR1:-1.02692411659;STAT2,4,6:-1.04613239474;LMO2:-1.05349526046;ZNF423:-1.1232624933;ZNF148:-1.15638273567;HES1:-1.17167876673;EP300:-1.18941096045;TFCP2:-1.3832124261;ESRRA:-1.39150350469;GLI1..3:-1.59581601634;RXRA_VDR{dimer}:-1.76927689603;MAFB:-1.86133708821;MYOD1:-2.00167599748
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10441-106E9;search_select_hide=table117:FF:10441-106E9
}}
}}

Latest revision as of 14:02, 3 June 2020

Name:synovial sarcoma cell line:HS-SY-II
Species:Human (Homo sapiens)
Library ID:CNhs11244
Sample type:cell lines
Genomic View: UCSC
RefEX:Specific genes
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuesynovium
dev stageNA
sexunknown
ageNA
cell typeunclassifiable
cell lineHS-SY-II
companyRIKEN Bioresource centre
collaborationYukio Nakamura (RIKEN BRC)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005318
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11244 CAGE DRX008018 DRR008890
Accession ID Hg19

Library idBAMCTSS
CNhs11244 DRZ000315 DRZ001700
Accession ID Hg38

Library idBAMCTSS
CNhs11244 DRZ011665 DRZ013050
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload
HumanCAGEScan Download raw sequence, BAM & CTSS

Library id3prime-FASTQ5prime-FASTQBAMCTSS
NCig10066downloaddownloaddownloaddownload
NCig10130downloaddownloaddownloaddownload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.207
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.601
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190.0636
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0.168
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.0563
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.38
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.0636
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.12
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.121
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.501
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory-0.00966
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.504
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.0696
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11244

Jaspar motifP-value
MA0002.21.11433e-5
MA0003.10.0719
MA0004.10.308
MA0006.10.296
MA0007.10.236
MA0009.10.815
MA0014.10.745
MA0017.10.00425
MA0018.20.229
MA0019.10.627
MA0024.14.8641e-4
MA0025.10.355
MA0027.10.681
MA0028.10.204
MA0029.10.632
MA0030.10.335
MA0031.10.662
MA0035.20.641
MA0038.10.00298
MA0039.20.297
MA0040.10.414
MA0041.10.197
MA0042.10.4
MA0043.10.95
MA0046.10.376
MA0047.20.199
MA0048.10.183
MA0050.11.11938e-6
MA0051.10.0019
MA0052.15.47995e-4
MA0055.10.0615
MA0057.10.0421
MA0058.10.273
MA0059.10.749
MA0060.18.21668e-12
MA0061.10.0112
MA0062.20.491
MA0065.20.00167
MA0066.10.0915
MA0067.10.909
MA0068.10.00102
MA0069.10.888
MA0070.10.506
MA0071.10.578
MA0072.10.559
MA0073.10.537
MA0074.10.456
MA0076.10.112
MA0077.10.544
MA0078.10.671
MA0079.20.142
MA0080.27.65858e-13
MA0081.10.124
MA0083.10.36
MA0084.10.795
MA0087.10.895
MA0088.10.919
MA0090.10.664
MA0091.10.201
MA0092.10.222
MA0093.10.242
MA0099.28.46623e-20
MA0100.10.31
MA0101.10.0813
MA0102.20.00777
MA0103.10.08
MA0104.20.159
MA0105.10.0173
MA0106.10.553
MA0107.10.0246
MA0108.20.102
MA0111.10.867
MA0112.27.39488e-5
MA0113.10.142
MA0114.10.039
MA0115.10.617
MA0116.10.0192
MA0117.10.591
MA0119.10.165
MA0122.10.35
MA0124.10.259
MA0125.10.0517
MA0131.10.179
MA0135.10.298
MA0136.13.66449e-9
MA0137.20.00846
MA0138.20.0427
MA0139.10.114
MA0140.10.398
MA0141.10.108
MA0142.10.59
MA0143.10.664
MA0144.10.00842
MA0145.10.0366
MA0146.10.0827
MA0147.10.255
MA0148.10.236
MA0149.10.0276
MA0150.17.66672e-5
MA0152.10.365
MA0153.10.214
MA0154.10.0243
MA0155.10.373
MA0156.13.85732e-4
MA0157.10.565
MA0159.10.00395
MA0160.10.0605
MA0162.10.22
MA0163.10.00429
MA0164.10.823
MA0258.10.00895
MA0259.10.199



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11244

Novel motifP-value
10.2
100.283
1000.384
1010.701
1020.933
1030.0385
1040.582
1050.429
1060.00474
1070.0878
1080.356
1090.0641
110.0713
1100.381
1110.576
1120.0498
1130.727
1140.0267
1150.731
1160.912
1170.348
1180.308
1190.122
120.474
1200.7
1210.666
1220.364
1230.85
1240.835
1250.625
1260.795
1270.0826
1280.0419
1290.31
130.748
1300.0255
1310.0739
1320.591
1330.649
1340.924
1350.137
1360.976
1370.0778
1380.117
1390.025
140.242
1400.313
1410.31
1420.986
1430.00548
1440.902
1450.824
1460.278
1470.502
1480.00531
1490.0991
150.181
1500.702
1510.218
1520.0814
1530.515
1540.994
1550.985
1560.178
1570.936
1580.901
1590.161
160.206
1600.478
1610.467
1620.665
1630.129
1640.27
1650.504
1660.498
1670.713
1680.0217
1690.0106
170.212
180.142
190.155
20.106
200.393
210.512
220.103
230.0379
240.8
250.425
260.437
270.0935
280.66
290.638
30.285
300.491
310.422
320.0326
330.385
340.443
350.554
360.181
370.0628
380.373
390.624
40.655
400.181
410.078
420.827
430.154
440.272
450.308
460.187
470.473
480.323
490.284
50.264
500.723
510.471
520.186
530.51
540.462
550.0493
560.407
570.756
580.285
590.0282
60.572
600.0353
610.415
620.105
630.284
640.295
650.0934
660.203
670.971
680.133
690.417
70.511
709.67851e-4
710.21
720.238
730.091
740.124
750.151
760.818
770.223
780.802
790.245
80.31
800.0344
810.538
820.0108
830.288
840.874
850.00579
860.261
870.156
880.696
890.0227
90.182
900.415
910.444
920.0276
930.324
940.182
950.36
960.132
970.792
980.179
990.704



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11244


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000151 (secretory cell)
0002320 (connective tissue cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000213 (lining cell)
0002078 (meso-epithelial cell)
0000499 (stromal cell)
0000153 (GAG secreting cell)
0000327 (extracellular matrix secreting cell)
0000447 (carbohydrate secreting cell)
0000215 (barrier cell)
0000255 (eukaryotic cell)
0000214 (synovial cell)

DOID: Disease
4 (disease)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
1115 (sarcoma)

UBERON: Anatomy
0000468 (multi-cellular organism)
0000483 (epithelium)
0002384 (connective tissue)
0000479 (tissue)
0000064 (organ part)
0000062 (organ)
0004120 (mesoderm-derived structure)
0004457 (cavity lining)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0004923 (organ component layer)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0006914 (squamous epithelium)
0004905 (articulation)
0000486 (multilaminar epithelium)
0006915 (stratified squamous epithelium)
0007616 (layer of synovial tissue)
0000042 (serous membrane)
0000982 (skeletal joint)
0004458 (body cavity or lining)
0010317 (germ layer / neural crest derived structure)
0002217 (synovial joint)
0002018 (synovial membrane of synovial joint)
0002204 (musculoskeletal system)
0001434 (skeletal system)
0004770 (articular system)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100400 (sarcoma cell line sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)
CL:0000222 (mesodermal cell)

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