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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@SAMD00005552
|DRA_sample_Accession=CAGE@SAMD00005552
|accession_numbers=CAGE;DRX008493;DRR009365;DRZ000790;DRZ002175
|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005552
|accession_numbers=CAGE;DRX008493;DRR009365;DRZ000790;DRZ002175;DRZ012140;DRZ013525
|accession_numbers_RNASeq=sRNA-Seq;DRX037134;DRR041500;DRZ007142
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001637,UBERON:0002100,UBERON:0000483,UBERON:0000479,UBERON:0000055,UBERON:0004111,UBERON:0000475,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0003914,UBERON:0000025,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0009569,UBERON:0004573,UBERON:0003834,UBERON:0003509,UBERON:0007500,UBERON:0001981,UBERON:0002049,UBERON:0003513,UBERON:0010317,UBERON:0007798,UBERON:0002456,UBERON:0001533,UBERON:0004535,UBERON:0004571,UBERON:0000915,UBERON:0004572,UBERON:0004537,UBERON:0001009
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001637,UBERON:0002100,UBERON:0000483,UBERON:0000479,UBERON:0000055,UBERON:0004111,UBERON:0000475,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0003914,UBERON:0000025,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0009569,UBERON:0004573,UBERON:0003834,UBERON:0003509,UBERON:0007500,UBERON:0001981,UBERON:0002049,UBERON:0003513,UBERON:0010317,UBERON:0007798,UBERON:0002456,UBERON:0001533,UBERON:0004535,UBERON:0004571,UBERON:0000915,UBERON:0004572,UBERON:0004537,UBERON:0001009
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002371,CL:0000393,CL:0000183,CL:0000187,CL:0000192,CL:0000211,CL:0000255,CL:0000359,CL:0002595,CL:0002593
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002371,CL:0000393,CL:0000183,CL:0000187,CL:0000192,CL:0000211,CL:0000255,CL:0000359,CL:0002595,CL:0002593
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|library_id=CNhs12046
|library_id=CNhs12046
|library_id_phase_based=2:CNhs12046
|library_id_phase_based=2:CNhs12046
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11436
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10009.TAGCTT.11436
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11436
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10009.TAGCTT.11436
|name=Smooth Muscle Cells - Internal Thoracic Artery, donor3
|name=Smooth Muscle Cells - Internal Thoracic Artery, donor3
|namespace=FANTOM5
|namespace=FANTOM5
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|profile_rnaseq=
|profile_rnaseq=
|profile_srnaseq=SRhi10009,,,
|profile_srnaseq=SRhi10009,,,
|refex=http://refex.dbcls.jp/genelist.php?lang=en&db=human&roku_valid=1&rk[]=&order_key=score
|refex=http://refex.dbcls.jp/genelist.php?lang
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|sample_category=primary cells
Line 97: Line 106:
|top_motifs=HES1:2.24764188856;PPARG:1.89684284053;RXRA_VDR{dimer}:1.81109384715;GZF1:1.73343595641;EBF1:1.58045970728;ZBTB6:1.56167924709;POU6F1:1.55311367676;NFE2L1:1.4886136589;ZNF238:1.35649867204;GCM1,2:1.34376846193;NKX2-2,8:1.3150864903;EN1,2:1.31167449491;HOX{A5,B5}:1.30090495381;GLI1..3:1.23719885267;HIF1A:1.17351429411;TFAP4:1.12558926332;HMX1:1.12060598974;TLX1..3_NFIC{dimer}:1.09277045127;IKZF1:1.08481071104;SPZ1:1.07575491181;GTF2A1,2:1.07203213706;RXR{A,B,G}:1.03534462577;ALX4:1.02928647122;HSF1,2:1.00038693357;TP53:0.98590850303;UFEwm:0.95249336706;XBP1:0.927026093681;SMAD1..7,9:0.915863430168;MAFB:0.890666924644;ESR1:0.884337106605;SRF:0.879641863832;ESRRA:0.848917619578;ATF6:0.836153054151;TBP:0.809989060655;FOX{I1,J2}:0.781900093484;TFCP2:0.773265560803;ZIC1..3:0.767872697484;ZNF148:0.730663602135;PBX1:0.707668802461;NANOG{mouse}:0.706289074306;NFATC1..3:0.691364213847;TBX4,5:0.679430835449;ALX1:0.662374727427;XCPE1{core}:0.628717262719;TEAD1:0.596480573289;HAND1,2:0.592956376553;KLF4:0.582866085504;PAX1,9:0.575928082127;REST:0.560253232554;LMO2:0.515459699891;ARID5B:0.510538883595;HLF:0.495880857228;TFAP2{A,C}:0.495519400396;TAL1_TCF{3,4,12}:0.472334318678;NR5A1,2:0.437676566173;NFE2L2:0.414586252684;NKX3-2:0.411195965804;GFI1B:0.40404719409;CDC5L:0.372295680863;BACH2:0.371458838083;LHX3,4:0.359496229425;ZNF423:0.326561239723;POU2F1..3:0.303778385156;PAX8:0.301735618878;FOS_FOS{B,L1}_JUN{B,D}:0.298724096666;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.255699683773;FOSL2:0.248180168842;ONECUT1,2:0.244672999579;AR:0.219540715475;SOX{8,9,10}:0.190265187427;LEF1_TCF7_TCF7L1,2:0.186008764663;PAX5:0.153902029506;NFIL3:0.148413789766;NFE2:0.147516502162;POU3F1..4:0.133523043087;NFIX:0.124541395244;GTF2I:0.118105438148;STAT5{A,B}:0.115418522253;TLX2:0.100746245362;CRX:0.0964149793753;VSX1,2:0.0786676646942;SOX17:0.0564947853773;bHLH_family:0.033730192874;JUN:0.0288824320116;HNF1A:0.00633566333103;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.0032068691422;CEBPA,B_DDIT3:-0.0277606666699;NFKB1_REL_RELA:-0.0283671182322;STAT2,4,6:-0.0304008252152;PAX6:-0.0362385871426;TFAP2B:-0.0554570882246;HMGA1,2:-0.0626851553017;HIC1:-0.0722069386383;ELK1,4_GABP{A,B1}:-0.0801393645093;GATA6:-0.0854157658752;MEF2{A,B,C,D}:-0.112678131904;NHLH1,2:-0.114913237132;TOPORS:-0.116239756069;NR3C1:-0.123489277548;RUNX1..3:-0.134612096306;RFX1:-0.147109059588;MYFfamily:-0.162803842779;ADNP_IRX_SIX_ZHX:-0.179416900217;HOXA9_MEIS1:-0.1803705345;NANOG:-0.185034450305;FOXL1:-0.188267907078;MTE{core}:-0.193760323993;ATF5_CREB3:-0.194629694816;EVI1:-0.204561401976;ETS1,2:-0.204586058128;MYB:-0.216718703678;MTF1:-0.228253030697;NKX3-1:-0.237882212888;HNF4A_NR2F1,2:-0.246757994092;MYOD1:-0.246879817964;RREB1:-0.257821659332;PATZ1:-0.268255952257;FOXP3:-0.287302745316;AHR_ARNT_ARNT2:-0.295960152985;PAX3,7:-0.313675570658;YY1:-0.342022276289;SPIB:-0.356505346316;SNAI1..3:-0.369100118063;ATF2:-0.370254431612;PAX2:-0.406962345144;ZEB1:-0.470302623533;MZF1:-0.480556914779;FOXQ1:-0.492636916838;PRRX1,2:-0.493866254129;HBP1_HMGB_SSRP1_UBTF:-0.51191928107;PRDM1:-0.521388314975;MAZ:-0.555890522899;SPI1:-0.565941287986;MYBL2:-0.60244174811;ZNF384:-0.622347011291;ELF1,2,4:-0.6267041462;ZNF143:-0.644583966913;DMAP1_NCOR{1,2}_SMARC:-0.668506194566;NR6A1:-0.676191906087;FOXM1:-0.679201789014;GATA4:-0.686416675008;E2F1..5:-0.688243863491;EP300:-0.702880720165;EGR1..3:-0.736943564263;ZFP161:-0.751361562687;POU1F1:-0.761655599534;SP1:-0.763052431664;TFDP1:-0.772133347193;POU5F1:-0.776839465454;MED-1{core}:-0.777722434378;NRF1:-0.779552011631;PDX1:-0.78420770743;DBP:-0.788663076513;SOX2:-0.801587529126;IRF1,2:-0.828640283389;FOXO1,3,4:-0.83416246976;OCT4_SOX2{dimer}:-0.837008625733;HOX{A6,A7,B6,B7}:-0.846454188315;PITX1..3:-0.848005458897;T:-0.92591427958;GFI1:-0.942977839396;FOX{F1,F2,J1}:-0.947449932873;NR1H4:-0.986445469388;SOX5:-0.987019547743;ATF4:-0.990983019116;FOX{D1,D2}:-1.01050215726;HOX{A4,D4}:-1.02373210442;CREB1:-1.04925352897;RORA:-1.09723506363;NFY{A,B,C}:-1.11036484177;AIRE:-1.11062689548;NKX2-1,4:-1.13218190385;NKX6-1,2:-1.18692071049;CUX2:-1.19752494399;TGIF1:-1.27069450211;RFX2..5_RFXANK_RFXAP:-1.2832613833;IRF7:-1.31571714005;FOXN1:-1.3383060851;ZBTB16:-1.35383452089;FOXA2:-1.36885406919;NKX2-3_NKX2-5:-1.41213395816;IKZF2:-1.46925960907;FOXP1:-1.49637960251;CDX1,2,4:-1.50620775063;BREu{core}:-1.61327994278;PAX4:-1.69534053955;BPTF:-1.73041855142;SREBF1,2:-1.74082714389;TEF:-1.93930117528;RBPJ:-2.01808562453;FOXD3:-2.11015671174;STAT1,3:-2.13959301157
|top_motifs=HES1:2.24764188856;PPARG:1.89684284053;RXRA_VDR{dimer}:1.81109384715;GZF1:1.73343595641;EBF1:1.58045970728;ZBTB6:1.56167924709;POU6F1:1.55311367676;NFE2L1:1.4886136589;ZNF238:1.35649867204;GCM1,2:1.34376846193;NKX2-2,8:1.3150864903;EN1,2:1.31167449491;HOX{A5,B5}:1.30090495381;GLI1..3:1.23719885267;HIF1A:1.17351429411;TFAP4:1.12558926332;HMX1:1.12060598974;TLX1..3_NFIC{dimer}:1.09277045127;IKZF1:1.08481071104;SPZ1:1.07575491181;GTF2A1,2:1.07203213706;RXR{A,B,G}:1.03534462577;ALX4:1.02928647122;HSF1,2:1.00038693357;TP53:0.98590850303;UFEwm:0.95249336706;XBP1:0.927026093681;SMAD1..7,9:0.915863430168;MAFB:0.890666924644;ESR1:0.884337106605;SRF:0.879641863832;ESRRA:0.848917619578;ATF6:0.836153054151;TBP:0.809989060655;FOX{I1,J2}:0.781900093484;TFCP2:0.773265560803;ZIC1..3:0.767872697484;ZNF148:0.730663602135;PBX1:0.707668802461;NANOG{mouse}:0.706289074306;NFATC1..3:0.691364213847;TBX4,5:0.679430835449;ALX1:0.662374727427;XCPE1{core}:0.628717262719;TEAD1:0.596480573289;HAND1,2:0.592956376553;KLF4:0.582866085504;PAX1,9:0.575928082127;REST:0.560253232554;LMO2:0.515459699891;ARID5B:0.510538883595;HLF:0.495880857228;TFAP2{A,C}:0.495519400396;TAL1_TCF{3,4,12}:0.472334318678;NR5A1,2:0.437676566173;NFE2L2:0.414586252684;NKX3-2:0.411195965804;GFI1B:0.40404719409;CDC5L:0.372295680863;BACH2:0.371458838083;LHX3,4:0.359496229425;ZNF423:0.326561239723;POU2F1..3:0.303778385156;PAX8:0.301735618878;FOS_FOS{B,L1}_JUN{B,D}:0.298724096666;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.255699683773;FOSL2:0.248180168842;ONECUT1,2:0.244672999579;AR:0.219540715475;SOX{8,9,10}:0.190265187427;LEF1_TCF7_TCF7L1,2:0.186008764663;PAX5:0.153902029506;NFIL3:0.148413789766;NFE2:0.147516502162;POU3F1..4:0.133523043087;NFIX:0.124541395244;GTF2I:0.118105438148;STAT5{A,B}:0.115418522253;TLX2:0.100746245362;CRX:0.0964149793753;VSX1,2:0.0786676646942;SOX17:0.0564947853773;bHLH_family:0.033730192874;JUN:0.0288824320116;HNF1A:0.00633566333103;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.0032068691422;CEBPA,B_DDIT3:-0.0277606666699;NFKB1_REL_RELA:-0.0283671182322;STAT2,4,6:-0.0304008252152;PAX6:-0.0362385871426;TFAP2B:-0.0554570882246;HMGA1,2:-0.0626851553017;HIC1:-0.0722069386383;ELK1,4_GABP{A,B1}:-0.0801393645093;GATA6:-0.0854157658752;MEF2{A,B,C,D}:-0.112678131904;NHLH1,2:-0.114913237132;TOPORS:-0.116239756069;NR3C1:-0.123489277548;RUNX1..3:-0.134612096306;RFX1:-0.147109059588;MYFfamily:-0.162803842779;ADNP_IRX_SIX_ZHX:-0.179416900217;HOXA9_MEIS1:-0.1803705345;NANOG:-0.185034450305;FOXL1:-0.188267907078;MTE{core}:-0.193760323993;ATF5_CREB3:-0.194629694816;EVI1:-0.204561401976;ETS1,2:-0.204586058128;MYB:-0.216718703678;MTF1:-0.228253030697;NKX3-1:-0.237882212888;HNF4A_NR2F1,2:-0.246757994092;MYOD1:-0.246879817964;RREB1:-0.257821659332;PATZ1:-0.268255952257;FOXP3:-0.287302745316;AHR_ARNT_ARNT2:-0.295960152985;PAX3,7:-0.313675570658;YY1:-0.342022276289;SPIB:-0.356505346316;SNAI1..3:-0.369100118063;ATF2:-0.370254431612;PAX2:-0.406962345144;ZEB1:-0.470302623533;MZF1:-0.480556914779;FOXQ1:-0.492636916838;PRRX1,2:-0.493866254129;HBP1_HMGB_SSRP1_UBTF:-0.51191928107;PRDM1:-0.521388314975;MAZ:-0.555890522899;SPI1:-0.565941287986;MYBL2:-0.60244174811;ZNF384:-0.622347011291;ELF1,2,4:-0.6267041462;ZNF143:-0.644583966913;DMAP1_NCOR{1,2}_SMARC:-0.668506194566;NR6A1:-0.676191906087;FOXM1:-0.679201789014;GATA4:-0.686416675008;E2F1..5:-0.688243863491;EP300:-0.702880720165;EGR1..3:-0.736943564263;ZFP161:-0.751361562687;POU1F1:-0.761655599534;SP1:-0.763052431664;TFDP1:-0.772133347193;POU5F1:-0.776839465454;MED-1{core}:-0.777722434378;NRF1:-0.779552011631;PDX1:-0.78420770743;DBP:-0.788663076513;SOX2:-0.801587529126;IRF1,2:-0.828640283389;FOXO1,3,4:-0.83416246976;OCT4_SOX2{dimer}:-0.837008625733;HOX{A6,A7,B6,B7}:-0.846454188315;PITX1..3:-0.848005458897;T:-0.92591427958;GFI1:-0.942977839396;FOX{F1,F2,J1}:-0.947449932873;NR1H4:-0.986445469388;SOX5:-0.987019547743;ATF4:-0.990983019116;FOX{D1,D2}:-1.01050215726;HOX{A4,D4}:-1.02373210442;CREB1:-1.04925352897;RORA:-1.09723506363;NFY{A,B,C}:-1.11036484177;AIRE:-1.11062689548;NKX2-1,4:-1.13218190385;NKX6-1,2:-1.18692071049;CUX2:-1.19752494399;TGIF1:-1.27069450211;RFX2..5_RFXANK_RFXAP:-1.2832613833;IRF7:-1.31571714005;FOXN1:-1.3383060851;ZBTB16:-1.35383452089;FOXA2:-1.36885406919;NKX2-3_NKX2-5:-1.41213395816;IKZF2:-1.46925960907;FOXP1:-1.49637960251;CDX1,2,4:-1.50620775063;BREu{core}:-1.61327994278;PAX4:-1.69534053955;BPTF:-1.73041855142;SREBF1,2:-1.74082714389;TEF:-1.93930117528;RBPJ:-2.01808562453;FOXD3:-2.11015671174;STAT1,3:-2.13959301157
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11436-118H5;search_select_hide=table117:FF:11436-118H5
}}
}}

Latest revision as of 18:01, 4 June 2020

Name:Smooth Muscle Cells - Internal Thoracic Artery, donor3
Species:Human (Homo sapiens)
Library ID:CNhs12046
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueinternal thoracic artery
dev stage50 years old adult
sexmale
age50
cell typesmooth muscle cell
cell lineNA
companyCell Applications
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot number1555
catalog numberCA358-R10a
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005552
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs12046 CAGE DRX008493 DRR009365
Accession ID Hg19

Library idBAMCTSS
CNhs12046 DRZ000790 DRZ002175
Accession ID Hg38

Library idBAMCTSS
CNhs12046 DRZ012140 DRZ013525
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
sRNA-Seq  SAMD00005552
Library accession numbers

Library idMethodExp. accession idRun accession id
SRhi10009.TAGCTT sRNA-Seq DRX037134 DRR041500
Accession ID Hg19

Library idBAMCTSS
SRhi10009.TAGCTT DRZ007142


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.17
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.253
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.62
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural-0.0257
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.371
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.467
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.62
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.254
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.17
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.419
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0.403
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth-0.0165
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.078
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.493
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.866
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic1.278
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.313
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.223
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12046

Jaspar motifP-value
MA0002.20.128
MA0003.10.153
MA0004.10.321
MA0006.10.261
MA0007.10.204
MA0009.10.439
MA0014.10.69
MA0017.10.186
MA0018.20.00331
MA0019.10.761
MA0024.14.21099e-4
MA0025.10.518
MA0027.10.749
MA0028.10.325
MA0029.10.497
MA0030.10.116
MA0031.10.0248
MA0035.20.549
MA0038.10.0106
MA0039.20.557
MA0040.10.676
MA0041.10.286
MA0042.10.738
MA0043.10.00579
MA0046.10.384
MA0047.20.821
MA0048.10.591
MA0050.12.8996e-5
MA0051.10.022
MA0052.10.619
MA0055.10.874
MA0057.10.159
MA0058.10.18
MA0059.10.272
MA0060.19.8854e-5
MA0061.10.321
MA0062.20.032
MA0065.20.0157
MA0066.10.0701
MA0067.10.0191
MA0068.10.19
MA0069.10.35
MA0070.10.964
MA0071.10.346
MA0072.10.395
MA0073.10.519
MA0074.10.0852
MA0076.10.151
MA0077.10.882
MA0078.10.318
MA0079.20.992
MA0080.20.00203
MA0081.10.19
MA0083.10.00314
MA0084.10.549
MA0087.10.871
MA0088.10.41
MA0090.10.0994
MA0091.10.0362
MA0092.10.0843
MA0093.10.281
MA0099.22.52545e-6
MA0100.10.171
MA0101.10.975
MA0102.20.301
MA0103.10.622
MA0104.20.528
MA0105.10.056
MA0106.10.0921
MA0107.10.883
MA0108.20.0332
MA0111.10.379
MA0112.29.55821e-4
MA0113.10.232
MA0114.10.194
MA0115.10.789
MA0116.10.0288
MA0117.10.789
MA0119.10.0568
MA0122.10.962
MA0124.10.537
MA0125.10.271
MA0131.10.242
MA0135.10.0975
MA0136.10.00136
MA0137.20.0705
MA0138.20.0862
MA0139.10.379
MA0140.10.888
MA0141.10.119
MA0142.10.45
MA0143.10.877
MA0144.10.524
MA0145.10.161
MA0146.10.104
MA0147.10.849
MA0148.10.739
MA0149.10.0963
MA0150.10.267
MA0152.10.877
MA0153.10.705
MA0154.10.0451
MA0155.10.0545
MA0156.10.19
MA0157.10.346
MA0159.10.0402
MA0160.10.623
MA0162.10.0874
MA0163.12.54181e-4
MA0164.10.271
MA0258.10.0142
MA0259.10.81



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12046

Novel motifP-value
10.188
100.626
1000.828
1010.186
1020.943
1030.0564
1040.442
1050.988
1060.0196
1070.0493
1080.425
1090.0297
110.0369
1100.139
1110.443
1120.238
1130.322
1140.0426
1150.0367
1160.0877
1170.344
1180.395
1190.184
120.586
1200.0679
1210.737
1220.981
1230.29
1240.294
1250.882
1260.81
1270.243
1280.0536
1290.478
130.813
1300.994
1310.808
1320.904
1330.715
1340.708
1350.01
1360.724
1370.721
1380.91
1390.0673
140.874
1400.93
1410.845
1420.196
1430.00503
1440.954
1450.453
1460.25
1470.178
1480.328
1490.0344
150.361
1500.33
1510.314
1520.0437
1530.715
1540.841
1550.524
1560.167
1570.871
1580.259
1590.595
160.0762
1600.133
1610.241
1620.835
1630.875
1640.311
1650.822
1660.546
1670.765
1680.318
1690.0354
170.215
180.0192
190.0548
20.21
200.471
210.515
220.124
230.0517
240.249
250.965
260.0964
270.236
280.483
290.241
30.24
300.553
310.41
323.73533e-4
330.641
340.355
350.314
360.626
370.0826
380.448
390.364
40.56
400.169
410.244
420.597
430.218
440.0863
450.337
460.0716
470.223
480.143
490.302
50.392
500.369
510.639
520.526
530.797
540.537
550.224
560.372
570.407
580.836
590.0144
60.663
600.208
610.717
620.353
630.139
640.309
650.0777
660.791
670.564
680.115
690.246
70.711
700.0572
710.125
720.7
730.0215
740.814
750.19
760.892
770.0107
780.916
791.54768e-4
80.0394
800.768
810.374
820.338
830.594
840.597
850.0393
860.427
870.0868
880.209
890.0145
90.194
900.632
910.242
920.128
930.176
940.309
950.0319
960.48
970.654
980.791
990.0306



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs12046


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002371 (somatic cell)
0000393 (electrically responsive cell)
0000183 (contractile cell)
0000187 (muscle cell)
0000192 (smooth muscle cell)
0000211 (electrically active cell)
0000255 (eukaryotic cell)
0000359 (vascular associated smooth muscle cell)
0002595 (smooth muscle cell of the subclavian artery)
0002593 (smooth muscle cell of the internal thoracic artery)

UBERON: Anatomy
0000468 (multi-cellular organism)
0001637 (artery)
0002100 (trunk)
0000483 (epithelium)
0000479 (tissue)
0000055 (vessel)
0004111 (anatomical conduit)
0000475 (organism subdivision)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0003914 (epithelial tube)
0000025 (tube)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0009569 (subdivision of trunk)
0004573 (systemic artery)
0003834 (thoracic segment blood vessel)
0003509 (arterial blood vessel)
0007500 (epithelial tube open at both ends)
0001981 (blood vessel)
0002049 (vasculature)
0003513 (trunk blood vessel)
0010317 (germ layer / neural crest derived structure)
0007798 (vascular system)
0002456 (internal thoracic artery)
0001533 (subclavian artery)
0004535 (cardiovascular system)
0004571 (systemic arterial system)
0000915 (thoracic segment of trunk)
0004572 (arterial system)
0004537 (blood vasculature)
0001009 (circulatory system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000167 (smooth muscle cell sample)
0000173 (human smooth muscle cell of the internal thoracic artery sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000355 (multi-potent skeletal muscle stem cell)
CL:0000222 (mesodermal cell)
CL:0000514 (smooth muscle myoblast)

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