FFCP PHASE1:Hg19::chr19:54063091..54063178,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr19:54063091..54063178,+ to FFCP PHASE1:Hg19::chr19:54063091..54063178,+: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr19:54063091..54063178,+ | |||
|coexpression_cluster_id=C437 | |||
|description=CAGE_peak_at_chr19:54063091..54063178,+ | |||
|id=chr19:54063091..54063178,+ | |||
|ontology_enrichment_celltype=CL:0000738!2.83e-14!140;CL:0002031!7.05e-11!124;CL:0000037!7.39e-11!172;CL:0000566!7.39e-11!172;CL:0002087!7.86e-11!119;CL:0000766!2.11e-10!76;CL:0000988!7.59e-10!182;CL:0002032!9.67e-10!165;CL:0000837!9.67e-10!165;CL:0000557!1.18e-09!71;CL:0002057!1.98e-09!42;CL:0002009!5.75e-09!65;CL:0000839!6.71e-09!70;CL:0000860!2.13e-08!45;CL:0002194!3.59e-08!63;CL:0000576!3.59e-08!63;CL:0000040!3.59e-08!63;CL:0000559!3.59e-08!63;CL:0000763!1.08e-07!112;CL:0000049!1.08e-07!112 | |||
|ontology_enrichment_celltype_v019=CL:0000860;1.86e-11;33!CL:0002057;1.86e-11;33!CL:0000624;3.97e-10;6!CL:0000473;1.94e-09;39!CL:0000234;1.94e-09;39!CL:0000766;5.83e-07;69 | |||
|ontology_enrichment_celltype_v019_2=CL:0000738,5.69e-16,136;CL:0002031,5.30e-14,120;CL:0002087,1.48e-13,115;CL:0000037,7.22e-13,168;CL:0000988,4.22e-12,177;CL:0000860,6.15e-12,42;CL:0002057,6.15e-12,42;CL:0000557,6.16e-12,67;CL:0000473,6.56e-12,48;CL:0000234,6.56e-12,48;CL:0002032,1.27e-11,161;CL:0000837,1.27e-11,161;CL:0000766,1.61e-11,72;CL:0002009,1.76e-10,61;CL:0000839,2.79e-10,66;CL:0000624,4.34e-10,6;CL:0002194,3.84e-09,59;CL:0000576,3.84e-09,59;CL:0000040,3.84e-09,59;CL:0000559,3.84e-09,59;CL:0000763,1.26e-08,108;CL:0000049,1.26e-08,108 | |||
|ontology_enrichment_development_v019=CL:0002057;1.28e-09;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!3.54e-20!115;UBERON:0001049!5.76e-12!57;UBERON:0005068!5.76e-12!57;UBERON:0006241!5.76e-12!57;UBERON:0007135!5.76e-12!57;UBERON:0002780!4.34e-10!41;UBERON:0001890!4.34e-10!41;UBERON:0006240!4.34e-10!41;UBERON:0002390!1.14e-09!102;UBERON:0003061!1.14e-09!102;UBERON:0003080!1.54e-09!42;UBERON:0001474!1.17e-08!86;UBERON:0002371!2.15e-08!80;UBERON:0002616!2.33e-08!59;UBERON:0002193!4.45e-08!112;UBERON:0002346!1.91e-07!90;UBERON:0002020!2.78e-07!34;UBERON:0003528!2.78e-07!34;UBERON:0003075!4.16e-07!86;UBERON:0007284!4.16e-07!86;UBERON:0001017!4.70e-07!82;UBERON:0001893!5.22e-07!34;UBERON:0005743!7.57e-07!86;UBERON:0002791!9.08e-07!33 | |||
|ontology_enrichment_uberon_v019=UBERON:0001894;6.85e-08;7!UBERON:0003296;4.01e-07;4!UBERON:0010133;4.01e-07;4 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,5.53e-13,114;UBERON:0001049,1.38e-11,56;UBERON:0005068,1.38e-11,56;UBERON:0006241,1.38e-11,56;UBERON:0007135,1.38e-11,56;UBERON:0002390,1.49e-11,98;UBERON:0003061,1.49e-11,98;UBERON:0002371,2.39e-11,76;UBERON:0001474,6.89e-10,82;UBERON:0002193,1.51e-09,108;UBERON:0000073,2.14e-09,53;UBERON:0002616,2.14e-09,53;UBERON:0002780,3.82e-09,41;UBERON:0001890,3.82e-09,41;UBERON:0003080,3.82e-09,41;UBERON:0006240,3.82e-09,41;UBERON:0002405,2.31e-08,93;UBERON:0004765,2.83e-08,90;UBERON:0003075,6.19e-08,82;UBERON:0007284,6.19e-08,82;UBERON:0001894,6.32e-08,7;UBERON:0006222,6.32e-08,7;UBERON:0001434,2.49e-07,100;UBERON:0002346,3.16e-07,86;UBERON:0001017,5.35e-07,81;UBERON:0003296,5.54e-07,4;UBERON:0010133,5.54e-07,4;UBERON:0002784,8.13e-07,4 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0.522371256399677,0,0,0.218441372130172,0,0,0,0,0,0,0,0,0,0,0.286235987131057,0,0,0.229240217243854,0.246301768349837,0.236132343941038,1.18009283054671,0.767658796194425,0.309632246632152,0,0,0,0,0.142169232487422,0,1.66198622559563,6.41742231904453,6.51032612147556,0.447830948479849,0.32389366601898,0.257575567634187,0.581592955118259,0.377875943688809,0,2.09186133215116,4.52284676824008,4.95530193432166,3.45230870786581,1.7931249457037,0.47296445977717,2.06847408441971,5.80936215225443,1.35426486594342,2.44715041405386,3.27487380069415,0.224723484445085,2.44867113896722,2.88836124368484,4.47535988059329,0.989553900560148,2.39356389145958,0,0.870627715885752,1.70215567407342,0,8.54245461872927,8.86520961314342,0,1.21079900526674,0,0,0.422510572623884,0.212604299965044,0,1.79725809834392,0.600707571366025,0.32145117339416,0,0.19891667719909,0,0,0,0,0,0.400395987036012,0,0,0,21.630092826159,15.2681669236444,16.8200220375101,1.32171328579026,0.560508562981536,0,22.424913792977,33.7989255964282,34.335450332918,0.334372990781356,8.79990119910694,2.8406868344084,1.94826728407911,0.111410456885174,2.94605907474837,2.65840673500345,2.43723477388514,0.384273959177026,0.260118695119756,0.493313713811028,0,0,7.1177550317789,1.33770414044857,5.22677619024884,0.113309342697566,1.14966148080576,1.71813722741315,3.79529538029254,0,0.651083453856419,0,0.150575119077773,0.127986611154418,0,0,0,13.7092585392818,19.523134292196,28.5304075649114,0,0,0,0,0,0.144846518960824,0,0.486634870302636,0,0,0.43917392846563,0.261958150995425,0,0,0.324547393654683,0.174129737299267,0.132957960518865,2.8618874916641,0.571994910780128,0.74291500265913,0,0,0,0,0.419499436209906,0,0,0,0,0,0.402829317109147,0,0.24406205754817,0,0,0,0,0,0,0,0,0,3.87780264148325,0,0.496971951695318,0,0.132409180813219,0.573673241497627,0,0,0,0,0,0.134710672069688,0,0,0,0,0,0,0.747243402759005,0,0,0,0,0.368502951935304,0,0,0.247266929278557,0,0,0,0,0,0,0,0,0,0.538168907066586,0.427114777637135,0,0,0,0,0,1.18143432568886,0,1.26216887122057,0.0920498986422993,0.161646056818812,0.355009592516614,0,0,0,0.272746120590835,0,0.365921118388786,0.265059536642971,0,0.207322110030741,0,0,0,0,0,0,0,0.236613600079688,0.168584690078102,0,0.330881918197182,0,0,0.269662616320329,0,0,0,0,0,0,0,0,0.590789906681404,0,0.245976877086227,0,0,0,0,0,0,0,0,0,0,0,0,0.190254152234598,0,0,0.492434012174795,0.234004265139238,0.297262324577456,0,0,0,0.0895585227028483,0,0,0,0.264145302039678,11.817702585824,3.89123874225796,2.14612136824846,0,0,0,0,0.102827492703324,0,0,0,0,0,0.129271715757778,0,0,0.531876233169741,0,0,0,0,0.714889968290738,0,0,0,0,0,0,0,0.499864955910285,0,1.00451418286425,14.7583757638122,0,0,0,0,0,0,0.112085143993527,12.6099686529233,18.9752265876375,21.0482579498787,0.254094624222463,0,0.773288812777695,0.335032530668698,0,0,2.99161459204025,0.828831026872071,0,0,0,0,0.178428988797162,0.473107245101804,0.117141414992713,0,0,1.03473071292505,0,0,0,0,0,17.3685141943225,5.82428342210265,10.0323904335238,0,0,0,0.248107807818777,0.153461973288062,0,0,0,0.160853921143607,0,0,0,0.164254312027618,0,0.348631135379878,0.120859449591622,0,0,0,0,0,0.451199612907412,0,0,0,0,0,0,0,0,0,0,0,0,0,0.219259876645935,0,0.256450125116389,0,0,0.618246069886334,0.732555718546747,0.330037999682352,0,0,0,0.096670718292122,0,0,0,0.214840489736547,0,0.255679882248303,0.0890320356467374,0,0,0.510450849978337,0,0,0.94443704049192,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179872457583315,0,0,0,0,0,0,0,0,0,0.141405431953713,0,0,0,0,0,0,0,0.6196469961995,0,0,0,0,0,0.211107635297664,0.658589785919804,0,0,0,0,0,0.470719003883896,0,0,0,0,0,0,0,0,0.411362273086194,0,0.540031437238115,0,0,0,0,0.371606350251437,0.28853842595289,0.355709216742071,0,0.199579371432817,0,0,0,0,0,0,10.0253790836027,0,0.321176150207399,0.201799707191048,0,0.343505344755765,0.307240764308458,0,0,0,0,1.23087398947712,0.270455678475983,0,1.4098700508785,0,1.61158997199083,0,0,0,0,0,0,0.994147647766298,0.703347082052564,0,0,0.63337622438398,2.39097585901284,0.276283915531148,0.251932747854276,0,0.246169610922139,0,0,0,0,2.56472854656027,2.3948309234694,2.22273980289274,0,0.371072392647405,0,0,0.262379999988587,0,0.1137934482855,0.254253650292766,1.18193840883968,0,0,0.173624994933292,0,0.844175070377856,0,3.53853631779919,0.886642856860642,1.31631238292384,0.435753854075961,0.139423744278603,1.23120413606075,0,0,0.448788222048861,0,0,0,0.533034776018635,0,0.156980256395025,0.166211681900156,0,0,0,0,0.158936578980379,0,0,0,0.432777279484182,0.995261931078505,0.353830258013357,0.611030144933625,1.77912677208373,0.494255755786011,0.417687798021821,0.67401132980677,0,0.234264445725339,0,0,0,1.18375320854817,1.20990716048664,1.53036380815245,0.31593289814244,0.300646838828985,0.207376382794494,0,0,0.627865836814451,0,0.284609546029793,0.277349346026277,0,0,0.174118413160805,2.09672001890436,0.343972064943233,0,0,0.164230914106418,0.290967049465258,0.176512253383001,0.677942222341597,0,0,0.443175571691151,1.368859679143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| ||
|short_description=p@chr19:54063091..54063178,+ | |||
}} | }} |
Latest revision as of 17:00, 27 July 2015
Short description: | p@chr19:54063091..54063178, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr19:54063091..54063178, + |
Coexpression cluster: | C437_CD4_CD8_Natural_CD19_thyroid_Peripheral_Mast |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
leukocyte | 5.69e-16 | 136 |
hematopoietic lineage restricted progenitor cell | 5.30e-14 | 120 |
nongranular leukocyte | 1.48e-13 | 115 |
hematopoietic stem cell | 7.22e-13 | 168 |
hematopoietic cell | 4.22e-12 | 177 |
classical monocyte | 6.15e-12 | 42 |
CD14-positive, CD16-negative classical monocyte | 6.15e-12 | 42 |
granulocyte monocyte progenitor cell | 6.16e-12 | 67 |
defensive cell | 6.56e-12 | 48 |
phagocyte | 6.56e-12 | 48 |
hematopoietic oligopotent progenitor cell | 1.27e-11 | 161 |
hematopoietic multipotent progenitor cell | 1.27e-11 | 161 |
myeloid leukocyte | 1.61e-11 | 72 |
macrophage dendritic cell progenitor | 1.76e-10 | 61 |
myeloid lineage restricted progenitor cell | 2.79e-10 | 66 |
CD4-positive, alpha-beta T cell | 4.34e-10 | 6 |
monopoietic cell | 3.84e-09 | 59 |
monocyte | 3.84e-09 | 59 |
monoblast | 3.84e-09 | 59 |
promonocyte | 3.84e-09 | 59 |
myeloid cell | 1.26e-08 | 108 |
common myeloid progenitor | 1.26e-08 | 108 |
Ontology term | p-value | n |
---|---|---|
adult organism | 5.53e-13 | 114 |
neural tube | 1.38e-11 | 56 |
neural rod | 1.38e-11 | 56 |
future spinal cord | 1.38e-11 | 56 |
neural keel | 1.38e-11 | 56 |
hematopoietic system | 1.49e-11 | 98 |
blood island | 1.49e-11 | 98 |
bone marrow | 2.39e-11 | 76 |
bone element | 6.89e-10 | 82 |
hemolymphoid system | 1.51e-09 | 108 |
regional part of nervous system | 2.14e-09 | 53 |
regional part of brain | 2.14e-09 | 53 |
regional part of forebrain | 3.82e-09 | 41 |
forebrain | 3.82e-09 | 41 |
anterior neural tube | 3.82e-09 | 41 |
future forebrain | 3.82e-09 | 41 |
immune system | 2.31e-08 | 93 |
skeletal element | 2.83e-08 | 90 |
neural plate | 6.19e-08 | 82 |
presumptive neural plate | 6.19e-08 | 82 |
diencephalon | 6.32e-08 | 7 |
future diencephalon | 6.32e-08 | 7 |
skeletal system | 2.49e-07 | 100 |
neurectoderm | 3.16e-07 | 86 |
central nervous system | 5.35e-07 | 81 |
gland of diencephalon | 5.54e-07 | 4 |
neuroendocrine gland | 5.54e-07 | 4 |
regional part of diencephalon | 8.13e-07 | 4 |