FFCP PHASE1:Hg19::chr4:109090075..109090095,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr4:109090075..109090095,- to FFCP PHASE1:Hg19::chr4:109090075..109090095,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=51176 | |EntrezGene=51176 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6551 | |HGNC=6551 | ||
|TSSclassifier=strong | |||
|UniProt=Q9UJU2,Q659G9 | |UniProt=Q9UJU2,Q659G9 | ||
|association_with_transcript=16bp_to_ENST00000379951,NM_001130713,NM_001130714,NM_016269_5end | |||
|cluster_id=chr4:109090075..109090095,- | |||
|coexpression_cluster_id=C28 | |||
|description=CAGE_peak_2_at_LEF1_5end | |||
|id=chr4:109090075..109090095,- | |||
|ontology_enrichment_celltype=CL:0000791!3.65e-14!18;CL:0000789!3.65e-14!18;CL:0002420!3.65e-14!18;CL:0002419!3.65e-14!18;CL:0000790!3.65e-14!18;CL:0000084!1.31e-13!25;CL:0000827!1.31e-13!25;CL:0000625!2.03e-10!11;CL:0000542!1.39e-09!53;CL:0000051!1.39e-09!53;CL:0000838!3.98e-09!52 | |||
|ontology_enrichment_celltype_v019=CL:0000791;1.66e-22;18!CL:0000789;1.66e-22;18!CL:0002419;1.66e-22;18!CL:0000084;2.17e-21;25!CL:0000625;5.82e-16;11!CL:0000624;7.39e-10;6!CL:0000542;4.01e-07;53 | |||
|ontology_enrichment_celltype_v019_2=CL:0000791,1.71e-22,18;CL:0000789,1.71e-22,18;CL:0002420,1.71e-22,18;CL:0002419,1.71e-22,18;CL:0000790,1.71e-22,18;CL:0000084,2.23e-21,25;CL:0000827,2.23e-21,25;CL:0000625,6.07e-16,11;CL:0000542,1.09e-12,53;CL:0000051,1.09e-12,53;CL:0000838,5.46e-12,52;CL:0000624,7.30e-10,6 | |||
|ontology_enrichment_development_v019=CL:0000790;1.66e-22;18!CL:0000051;4.01e-07;53 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!4.35e-23!115;UBERON:0001049!1.15e-14!57;UBERON:0005068!1.15e-14!57;UBERON:0006241!1.15e-14!57;UBERON:0007135!1.15e-14!57;UBERON:0002780!1.42e-11!41;UBERON:0001890!1.42e-11!41;UBERON:0006240!1.42e-11!41;UBERON:0001017!4.84e-11!82;UBERON:0003080!4.96e-11!42;UBERON:0002616!5.07e-11!59;UBERON:0002020!6.87e-11!34;UBERON:0003528!6.87e-11!34;UBERON:0000178!6.97e-11!15;UBERON:0000179!6.97e-11!15;UBERON:0000463!6.97e-11!15;UBERON:0001893!7.93e-11!34;UBERON:0002791!2.20e-10!33;UBERON:0005743!2.69e-10!86;UBERON:0001869!4.97e-10!32;UBERON:0000073!6.64e-10!94;UBERON:0001016!6.64e-10!94;UBERON:0003075!1.27e-09!86;UBERON:0007284!1.27e-09!86;UBERON:0000955!1.89e-09!69;UBERON:0006238!1.89e-09!69;UBERON:0001950!2.25e-09!20;UBERON:0002619!3.68e-09!22;UBERON:0002346!1.68e-08!90;UBERON:0000956!4.90e-08!25;UBERON:0000203!4.90e-08!25;UBERON:0003056!1.65e-07!61 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;3.79e-12;15!UBERON:0000179;3.79e-12;15!UBERON:0000463;3.79e-12;15!UBERON:0001950;5.03e-12;20!UBERON:0002619;5.17e-12;22!UBERON:0001893;1.43e-11;34!UBERON:0002780;2.29e-11;41!UBERON:0001890;2.29e-11;41!UBERON:0002791;4.74e-11;32!UBERON:0001869;4.76e-11;32!UBERON:0003528;1.21e-10;34!UBERON:0002020;1.21e-10;34!UBERON:0000956;4.38e-10;25!UBERON:0000203;4.38e-10;25!UBERON:0000073;4.90e-10;53!UBERON:0002616;4.90e-10;53!UBERON:0002390;1.80e-09;32!UBERON:0004177;3.17e-07;5!UBERON:0005057;3.17e-07;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,2.62e-17,114;UBERON:0001049,2.90e-17,56;UBERON:0005068,2.90e-17,56;UBERON:0006241,2.90e-17,56;UBERON:0007135,2.90e-17,56;UBERON:0000073,3.05e-16,53;UBERON:0002616,3.05e-16,53;UBERON:0002780,8.90e-15,41;UBERON:0001890,8.90e-15,41;UBERON:0003080,8.90e-15,41;UBERON:0006240,8.90e-15,41;UBERON:0001893,1.01e-13,34;UBERON:0003528,1.14e-12,34;UBERON:0002020,1.14e-12,34;UBERON:0001869,1.74e-12,32;UBERON:0002791,2.10e-12,32;UBERON:0000178,4.08e-12,15;UBERON:0000179,4.08e-12,15;UBERON:0000463,4.08e-12,15;UBERON:0002619,4.85e-12,22;UBERON:0001950,5.67e-12,20;UBERON:0000955,2.11e-10,68;UBERON:0006238,2.11e-10,68;UBERON:0000956,4.14e-10,25;UBERON:0000203,4.14e-10,25;UBERON:0003075,1.63e-09,82;UBERON:0007284,1.63e-09,82;UBERON:0001017,1.71e-09,81;UBERON:0001016,5.91e-09,89;UBERON:0002346,1.17e-08,86;UBERON:0003056,2.33e-08,61;UBERON:0010371,5.67e-08,104;UBERON:0004177,3.16e-07,7;UBERON:0005057,3.16e-07,7 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.369363174230364,0,0.940364164434263,0,0.273748850145768,0,0.229240217243854,0.410502947249729,0.0787107813136792,1.96682138424452,0.383829398097213,2.63187409637329,0,0,0,0,0,0.293600439334847,2.76997704265939,3.81034450193269,5.4252717678963,0,0.971680998056939,0.257575567634187,0,0,0,0,0.411167888021826,0,0,0.256160706529101,0.236482229888585,0,0,0,0.188242339542605,0.818718450173537,0,0.306083892370903,0,0,0,0.199463657621632,0,0.290209238628584,1.13477044938228,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.426730222566507,0,0.574752439954483,0,0,0,0,0,0,0.560508562981536,3.16060901730092,40.5222126434496,22.4016134767024,19.9433454029524,4.34684888015763,65.5103755933517,57.7606322996375,44.8101475338196,0.557052284425868,16.7925367260657,12.4058980966828,15.7066240983709,0.25618263945135,0.650296737799391,9.70183637161689,7.73780049800375,12.1717296008722,66.7289534229272,64.2097987415311,54.3584723785879,1.92625882585863,18.0113631992903,11.6833331464094,9.1087089127021,25.8037985602518,19.5325036156926,18.0585888445191,17.1655635748661,16.51027283892,23.7368380449457,20.8363981798735,15.6014319414999,10.0803371612366,3.20928234940209,28.2407587571458,0,0,0,0,0,0,0.795285947051099,1.94653948121054,0.189069634328136,0.443458794925128,0.175669571386252,0.851363990735132,0,0,0,0,0.26591592103773,0,0,0.371457501329565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.31780417436063,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.117434498643765,0,0,0,0,0,0,0,0,0,0.168336113954066,0.500474079487857,0,0,0,0.150238058906597,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.10075209822764,0,0,0,0,0.365921118388786,0.265059536642971,1.62671520017326,0.932949495138334,1.00928340350251,0,0,0.643240938192885,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.4115740113314,0,0,0,0,63.5706863157097,0.245976877086227,0,0,0,0.100528972411631,0,0,0,0,0.579652024875384,0.117408694235822,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.207328115540772,0,0.37872730027914,0.507983154337352,0.381988425558278,0,0,1.23392991243988,4.20480280981484,0.285826432630578,0.672786506072164,1.74384027533312,0.2933531432838,0,0,0,0,0,0.257207374262142,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,8.47232268868287,9.05635814409973,11.9359023740166,0.508189248444927,1.30139853857622,0.773288812777695,0.167516265334349,0,0.749007023947182,0,0.828831026872071,0,0.500170521059677,0,0,0,0,0,0.300946099727719,0,1.03473071292505,0,0.184369168541703,0,0,0,15.9211380114623,16.1785650613963,13.447672283234,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.362578348774867,0,0,0,0,0.131124414959424,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.721287081534056,0.0915694648183434,0.165018999841176,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.136499911407986,0,0,0,0,0,0,0.655894752046633,0,0,0,0,0.0982490410131212,0,0,0,0,0.379473173765715,0,0,0.670302275535787,0,0.188287601553558,0,0,0,0,6.5968189200182,8.41100927856613,10.8232965563091,12.1498205483472,7.4045209155515,6.48473311192717,5.40031437238115,7.13812658664843,0,0,0,2.04383492638291,67.2294532470233,171.451842469678,59.3065734551219,0,0,0.423347165447766,0,0,0,0,0,0.169291777801603,0,0,0,0,0,0,0,0,0,0,0.540911356951966,0,1.4098700508785,0,0.146508179271894,0,0,0.568272293612826,0,0,0,0,1.1253553312841,0,0,0,0.597743964753209,2.76283915531148,0.251932747854276,0.102268682502155,0,0,0,0,0,0.789147245095469,16.7638164642858,0,0.969332746095218,0.834912883456661,0,0,0,0,0.1137934482855,0,0.236387681767936,0.344743373241465,0.291604613383254,0,0,1.32656082487949,0,1.3269511191747,0,0.219385397153973,0,0,1.61595542857974,0,0,0,0,0,0.0915975934018623,0.533034776018635,56.2063140076551,10.8316376912567,0.498635045700469,0.225595660617181,0.588187602953219,0.671286347903371,0,3.17873157960757,0.421996129056054,0,0.424059214301822,32.0255186818295,0,0,1.22206028986725,0.593042257361244,0.247127877893006,0.626531697032732,1.21322039365219,0.802577647298789,1.1713222286267,1.45963831372533,0,0,0.394584402849391,3.62972148145992,0.91821828489147,0.442306057399416,0.150323419414493,1.7626992537532,0.664653872707185,0,0,0,0,0,0,0,0,0.52418000472609,0,0,0,0,0.775912131907355,0,1.35588444468319,0,0.19871461170299,1.13959432720582,0,0,0,0,0,0.687219576995494,0,0,0,0,0,0,0.713987523454252,0,0.600420288709789,1.36905378891993,3.83239764200917,0,0.262887354279314,0,0.229160424011684,0,0,0,0.223171457441873,0.470284307407084,0,0,0,0,0,0,0,0,1.77064427945048,0.160753148465019,0,0,0,0,1.27574068981852,0,1.18208560948797,2.25554728980492,0,0,0,0,0,0,0,0,0,0,2.21649806023215,0,0.113312091520126,0,1.32506888912221,0.904980694530854,2.38018683136842,0,0,0.533937062838473,1.72924735609633,0.414239055347196,15.3811466761705,8.69491180350955,0.60896299190448,0.638341257770182,0,0,0,0,4.08340650250609,0,0.854183854313742,2.253436752717,1.72022758707021,2.99508439149501,2.11127770000704,0,0,1.66814029295813,5.70930667089935,0,0.468334905806882,1.1593682288866,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0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| ||
|short_description=p2@LEF1 | |||
}} | }} |
Latest revision as of 15:13, 24 September 2015
Short description: | p2@LEF1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_LEF1_5end |
Coexpression cluster: | C28_thymus_acute_vein_Hodgkin_chronic_throat_Dendritic |
Association with transcript: | 16bp_to_ENST00000379951, NM_001130713, NM_001130714, NM_016269_5end |
EntrezGene: | LEF1 |
HGNC: | 6551 |
UniProt: | Q9UJU2Q659G9 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mature alpha-beta T cell | 1.71e-22 | 18 |
alpha-beta T cell | 1.71e-22 | 18 |
immature T cell | 1.71e-22 | 18 |
mature T cell | 1.71e-22 | 18 |
immature alpha-beta T cell | 1.71e-22 | 18 |
T cell | 2.23e-21 | 25 |
pro-T cell | 2.23e-21 | 25 |
CD8-positive, alpha-beta T cell | 6.07e-16 | 11 |
lymphocyte | 1.09e-12 | 53 |
common lymphoid progenitor | 1.09e-12 | 53 |
lymphoid lineage restricted progenitor cell | 5.46e-12 | 52 |
CD4-positive, alpha-beta T cell | 7.30e-10 | 6 |
Ontology term | p-value | n |
---|---|---|
adult organism | 2.62e-17 | 114 |
neural tube | 2.90e-17 | 56 |
neural rod | 2.90e-17 | 56 |
future spinal cord | 2.90e-17 | 56 |
neural keel | 2.90e-17 | 56 |
regional part of nervous system | 3.05e-16 | 53 |
regional part of brain | 3.05e-16 | 53 |
regional part of forebrain | 8.90e-15 | 41 |
forebrain | 8.90e-15 | 41 |
anterior neural tube | 8.90e-15 | 41 |
future forebrain | 8.90e-15 | 41 |
telencephalon | 1.01e-13 | 34 |
brain grey matter | 1.14e-12 | 34 |
gray matter | 1.14e-12 | 34 |
cerebral hemisphere | 1.74e-12 | 32 |
regional part of telencephalon | 2.10e-12 | 32 |
blood | 4.08e-12 | 15 |
haemolymphatic fluid | 4.08e-12 | 15 |
organism substance | 4.08e-12 | 15 |
regional part of cerebral cortex | 4.85e-12 | 22 |
neocortex | 5.67e-12 | 20 |
brain | 2.11e-10 | 68 |
future brain | 2.11e-10 | 68 |
cerebral cortex | 4.14e-10 | 25 |
pallium | 4.14e-10 | 25 |
neural plate | 1.63e-09 | 82 |
presumptive neural plate | 1.63e-09 | 82 |
central nervous system | 1.71e-09 | 81 |
nervous system | 5.91e-09 | 89 |
neurectoderm | 1.17e-08 | 86 |
pre-chordal neural plate | 2.33e-08 | 61 |
ecto-epithelium | 5.67e-08 | 104 |
hemopoietic organ | 3.16e-07 | 7 |
immune organ | 3.16e-07 | 7 |