FFCP PHASE1:Hg19::chr4:16900198..16900214,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr4:16900198..16900214,- to FFCP PHASE1:Hg19::chr4:16900198..16900214,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=9079 | |EntrezGene=9079 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6533 | |HGNC=6533 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=2bp_to_ENST00000441778_5end | |||
|cluster_id=chr4:16900198..16900214,- | |||
|coexpression_cluster_id=C1083 | |||
|description=CAGE_peak_2_at_LDB2_5end | |||
|id=chr4:16900198..16900214,- | |||
|ontology_enrichment_celltype=CL:0002139!1.96e-12!24;CL:0000115!3.88e-10!35;CL:0000071!7.74e-09!18;CL:0002546!7.74e-09!18;CL:0002078!1.39e-07!44 | |||
|ontology_enrichment_celltype_v019=CL:0002139;1.55e-13;24!CL:0000115;1.06e-09;36!CL:0000071;2.60e-09;18!CL:0002078;9.67e-07;45 | |||
|ontology_enrichment_celltype_v019_2=CL:0002139,1.33e-13,24;CL:0000115,1.29e-11,36;CL:0000071,2.22e-09,18;CL:0002546,2.22e-09,18;CL:0002078,7.74e-09,45 | |||
|ontology_enrichment_development_v019=CL:0002546;2.60e-09;18!UBERON:0006601;4.39e-07;82 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!4.46e-30!115;UBERON:0003080!2.24e-24!42;UBERON:0002780!8.12e-24!41;UBERON:0001890!8.12e-24!41;UBERON:0006240!8.12e-24!41;UBERON:0001049!2.50e-22!57;UBERON:0005068!2.50e-22!57;UBERON:0006241!2.50e-22!57;UBERON:0007135!2.50e-22!57;UBERON:0001017!1.07e-21!82;UBERON:0001869!1.24e-21!32;UBERON:0001893!1.76e-21!34;UBERON:0005743!1.86e-21!86;UBERON:0002791!9.47e-21!33;UBERON:0002020!1.31e-20!34;UBERON:0003528!1.31e-20!34;UBERON:0000073!4.92e-20!94;UBERON:0001016!4.92e-20!94;UBERON:0002616!5.15e-20!59;UBERON:0002346!1.67e-19!90;UBERON:0000955!2.00e-19!69;UBERON:0006238!2.00e-19!69;UBERON:0002619!1.59e-17!22;UBERON:0000956!1.67e-17!25;UBERON:0000203!1.67e-17!25;UBERON:0003075!2.35e-17!86;UBERON:0007284!2.35e-17!86;UBERON:0001950!1.36e-16!20;UBERON:0003056!2.21e-16!61;UBERON:0004111!4.14e-14!241;UBERON:0000477!1.29e-13!286;UBERON:0000025!3.56e-13!194;UBERON:0000153!5.14e-13!129;UBERON:0007811!5.14e-13!129;UBERON:0000033!1.36e-12!123;UBERON:0000924!3.41e-12!173;UBERON:0006601!3.41e-12!173;UBERON:0004121!9.98e-11!169;UBERON:0000468!2.46e-09!659;UBERON:0000119!2.65e-09!312;UBERON:0000483!5.53e-09!309;UBERON:0001986!7.74e-09!18;UBERON:0004638!7.74e-09!18;UBERON:0004852!7.74e-09!18;UBERON:0006914!4.11e-07!25;UBERON:0000487!4.30e-07!22;UBERON:0001871!6.35e-07!7;UBERON:0000475!9.49e-07!365 | |||
|ontology_enrichment_uberon_v019=UBERON:0001869;2.96e-22;32!UBERON:0002791;1.20e-20;32!UBERON:0001893;1.32e-20;34!UBERON:0002619;1.47e-20;22!UBERON:0000956;9.17e-20;25!UBERON:0000203;9.17e-20;25!UBERON:0001950;1.66e-19;20!UBERON:0003528;2.24e-19;34!UBERON:0002020;2.24e-19;34!UBERON:0002780;1.43e-18;41!UBERON:0001890;1.43e-18;41!UBERON:0000073;1.13e-11;53!UBERON:0002616;1.13e-11;53!UBERON:0001017;1.45e-09;75!UBERON:0000955;2.11e-09;68!UBERON:0004638;2.60e-09;18!UBERON:0001986;2.60e-09;18!UBERON:0004852;2.60e-09;18!UBERON:0007023;1.04e-08;114!UBERON:0000922;5.98e-08;49!UBERON:0006914;6.46e-08;25!UBERON:0001016;6.87e-08;83!UBERON:0000487;8.51e-08;22!UBERON:0001871;3.59e-07;6!UBERON:0000200;8.59e-07;6 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,6.33e-31,114;UBERON:0002780,2.87e-26,41;UBERON:0001890,2.87e-26,41;UBERON:0003080,2.87e-26,41;UBERON:0006240,2.87e-26,41;UBERON:0001869,1.53e-24,32;UBERON:0001893,1.96e-23,34;UBERON:0002791,1.62e-22,32;UBERON:0003528,1.83e-21,34;UBERON:0002020,1.83e-21,34;UBERON:0001049,3.58e-21,56;UBERON:0005068,3.58e-21,56;UBERON:0006241,3.58e-21,56;UBERON:0007135,3.58e-21,56;UBERON:0002619,1.54e-20,22;UBERON:0001017,1.65e-20,81;UBERON:0000073,4.61e-20,53;UBERON:0002616,4.61e-20,53;UBERON:0000956,1.25e-19,25;UBERON:0000203,1.25e-19,25;UBERON:0001950,1.97e-19,20;UBERON:0001016,2.99e-19,89;UBERON:0000955,3.59e-18,68;UBERON:0006238,3.59e-18,68;UBERON:0002346,1.65e-16,86;UBERON:0003075,3.06e-14,82;UBERON:0007284,3.06e-14,82;UBERON:0003056,3.54e-14,61;UBERON:0004111,2.92e-13,240;UBERON:0010314,5.24e-12,132;UBERON:0000025,1.18e-11,192;UBERON:0004121,4.48e-10,171;UBERON:0000924,4.48e-10,171;UBERON:0006601,4.48e-10,171;UBERON:0011216,1.01e-09,223;UBERON:0004638,2.22e-09,18;UBERON:0001986,2.22e-09,18;UBERON:0004852,2.22e-09,18;UBERON:0010371,3.26e-09,104;UBERON:0006914,5.03e-08,25;UBERON:0000487,7.31e-08,22;UBERON:0001871,4.00e-07,6;UBERON:0000200,8.94e-07,6 | |||
|phase1_expression=0.181678379270557,0,0.281908808191942,0,0.893922188854576,0,0,0,0.783556884599516,0,0,0,0.263766978228454,0,0,0,0.602694528023977,0,0.487932798790507,0.61560529038394,0,0.313454721478088,3.14859585844162,1.23186982565596,0.502170558379211,0,0,0,0,0,0.309632246632152,0,0,0,0,0,0,0,0,0.217010870715852,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.21079900526674,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.506039384039006,0,0,0,0,0,0,0,0,0,0,0.289648807765598,0,0,0.12786256184353,1.0843174571537,2.50668955317945,2.31754430337318,0.795285947051099,0,0.283604451492204,0,0.175669571386252,5.17367348215965,0,0,0,0,0,0,0,0,5.16782259153433,4.30117297553062,1.73570250803797,3.95715559346807,2.09749718104953,6.87795104850169,2.71693456497854,17.313922864345,16.7210143462754,9.70689777017544,2.01414658554573,6.0821768457481,3.41686880567437,4.04429388380456,0.81014194788176,10.8945668506577,7.63399866928977,6.30624290706604,1.53316637465883,2.84779697870439,4.21364011039937,0,0,0,0.496971951695318,0.886413581652058,0.794455084879313,7.74458876021797,2.4826786753885,3.36406560085384,0,0.24666754841716,1.24484414159907,1.0776853765575,0.980771418680752,0.605429710579726,2.30470369792,0.234321431833797,0.624320153660641,1.1409436430889,0,0.23486899728753,0,0,0,0.368502951935304,0.103325781175765,1.18800285728205,1.23633464639278,0,0,1.0100166837244,0.875829639103749,0.277064115484183,6.14568669233173,1.22595118319608,0.901428353439581,0.226864366320042,3.22901344239952,2.34913127700424,3.81477422087211,4.20127534518163,4.225153698776,1.8034837803194,3.16398655763703,3.88185564154912,2.63079913935236,6.05841058185875,3.31379635112278,12.7700384886861,3.90510551768276,1.91428986632517,2.7129694769678,0,0,0,1.21973706129595,2.38553582978673,1.04574548582567,0.932949495138334,1.00928340350251,1.82488679537915,1.56449532329816,0.643240938192885,1.38134921352481,0,0.721879481669586,0,0,0,0,0,0,0,0,0,10.3341763647451,0,0.4115740113314,0,0,0,2.95394953340702,0,0,0,0,0,0,0,0.325808305310325,0,0,0.115930404975077,0.234817388471643,7.94015462685906,2.31492756288305,5.89787871927255,0,0,0,0,0,0,0,0,0,0,0,0,0.176096868026452,2.69526550203004,1.15295962733569,0.50496973370552,0.190493682876507,0,1.17217447210047,0,0,0,0.857479297891735,0.336393253036082,3.05172048183296,0.36669142910475,1.03417372606222,0,0.845302752556,3.19125739901845,1.04007436911366,0.514414748524284,1.41849132023278,0,0.285955987316295,0,0,0.65147236858747,0,0,3.61727252471503,0,1.69954085009497,0,0,0,0.479249710983165,4.59447743336456,1.42636905040718,0,0,0,0,0.591092280605782,0,0.256686072559497,1.77866236955724,5.20559415430487,0,1.17261385734044,0,0,0,0,0,1.00034104211935,0.271265023699736,4.78332981520856,2.3195768543631,3.15404830067869,5.73992933464295,0.902838299183157,0,0,3.32112799267718,2.39679919104214,3.90976265106373,0.195801157462741,0,0,0,0,0,0,0,0.248107807818777,0.767309866440312,1.40330047216537,0.640695746278505,0.511707249066704,0.321707842287215,0,1.54209693802656,2.84098760501003,3.12083192852475,2.07701771673448,1.39452454151951,0,0,0,2.18147451512753,2.00300284807389,1.70461739447251,0,0,0,0,0,1.13733384070897,3.91215522135986,3.45465465763423,3.08454505380579,0,0,0,0,0,0,0,0.256450125116389,0,0.325378394664303,2.67906630284078,0.915694648183434,0.660075999364704,0,0,6.42735719376638,2.03008508413456,0.770243085573222,1.07452572308291,0,0.859361958946189,0.725083469571143,0.596586391912706,2.22580089116843,0,0,0,0,1.39453664789186,1.88887408098384,0.6970372701606,0,0,0,0.18532421910392,0,0,0.632758849437452,0,0,1.71175595213568,0.636406495851874,0,0.359744915166629,0.54907405947211,0.706874414074119,0,0,0,0,0,0,1.22849920267187,3.11091950298168,1.13008116620243,0.551365343546124,0,0,1.73632660280006,1.9676842561399,0,0.30982349809975,0.281695602532241,0.286822704408103,0,0,1.77380532035299,2.74439925886963,2.63435914367922,1.51789269506286,0.699869440489966,0,0.670302275535787,0,3.48332062874083,0,0,0,0,0,0,0.569647187174163,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.01575066680962,0,0,0,0,0,0,0,0,0.278406173895242,0,0,4.32993558397166,0,0,8.64398257704175,0,0,0,0,0,0,16.9005100120271,2.39138007897872,0,0,0,4.18420775327246,2.21027132424918,0,1.94310496754094,0,0,0,0,0,3.45251919729268,0,0,3.87733098438087,8.99850552169957,11.9768278800717,0,0,5.07499702804355,0,0,0,0,9.62295224164739,0,18.6005691020906,5.90922549264499,0,0.331737779793674,0,7.89787429754301,0,0,8.61842895242527,1.36730467016401,0,0,0,0,1.28236630762607,0,0,9.41881538370149,0,0,0,0,0.189753732724185,0,0,0,0,3.67860687561555,0.995261931078505,3.00755719311353,2.4441205797345,0,0,0,1.34802265961354,7.2231988256891,6.09087558885882,0,0,0,1.57833761139756,12.0990716048664,16.221856366416,4.10712767585172,0,0,0,0,0,0,0,0,0,0,0,1.7472666824203,0,0,0,0,2.23074737923365,0,4.97157629717171,0.137041924646751,0,13.8017535183816,0,0,1.92107695265417,0,0,0,0,0,0,0,0,0,3.2639429643623,3.75635766871975,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| ||
|short_description=p2@LDB2 | |||
}} | }} |
Latest revision as of 15:36, 16 September 2015
Short description: | p2@LDB2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_LDB2_5end |
Coexpression cluster: | C1083_lung_uterus_Endothelial_neuroectodermal_spleen_mesenchymal_occipital |
Association with transcript: | 2bp_to_ENST00000441778_5end |
EntrezGene: | LDB2 |
HGNC: | 6533 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endothelial cell of vascular tree | 1.33e-13 | 24 |
endothelial cell | 1.29e-11 | 36 |
blood vessel endothelial cell | 2.22e-09 | 18 |
embryonic blood vessel endothelial progenitor cell | 2.22e-09 | 18 |
meso-epithelial cell | 7.74e-09 | 45 |