FFCP PHASE1:Hg19::chr9:123691373..123691438,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr9:123691373..123691438,- to FFCP PHASE1:Hg19::chr9:123691373..123691438,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=7185 | |EntrezGene=7185 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=12031 | |HGNC=12031 | ||
|TSSclassifier=strong | |||
|UniProt=Q13077 | |UniProt=Q13077 | ||
|association_with_transcript=12bp_to_ENST00000540010,NM_001190945_5end | |||
|cluster_id=chr9:123691373..123691438,- | |||
|description=CAGE_peak_3_at_TRAF1_5end | |||
|id=chr9:123691373..123691438,- | |||
|ontology_enrichment_celltype=CL:0002087!2.94e-26!119;CL:0000738!3.00e-25!140;CL:0002031!1.12e-23!124;CL:0002057!1.20e-14!42;CL:0000542!2.56e-13!53;CL:0000051!2.56e-13!53;CL:0000037!2.94e-13!172;CL:0000566!2.94e-13!172;CL:0000838!4.27e-13!52;CL:0000988!6.51e-13!182;CL:0000860!3.51e-12!45;CL:0002032!5.11e-12!165;CL:0000837!5.11e-12!165;CL:0002194!5.95e-12!63;CL:0000576!5.95e-12!63;CL:0000040!5.95e-12!63;CL:0000559!5.95e-12!63;CL:0002009!8.37e-12!65;CL:0000557!9.23e-12!71;CL:0000839!3.11e-11!70;CL:0000766!4.57e-11!76;CL:0000791!1.44e-08!18;CL:0000789!1.44e-08!18;CL:0002420!1.44e-08!18;CL:0002419!1.44e-08!18;CL:0000790!1.44e-08!18;CL:0000084!2.42e-07!25;CL:0000827!2.42e-07!25 | |||
|ontology_enrichment_celltype_v019=CL:0000860;4.25e-12;33!CL:0002057;4.25e-12;33!CL:0002087;1.01e-10;104!CL:0000473;5.65e-10;39!CL:0000234;5.65e-10;39!CL:0000576;5.70e-10;48!CL:0000791;3.43e-09;18!CL:0000789;3.43e-09;18!CL:0002419;3.43e-09;18!CL:0000542;1.13e-08;53!CL:0000766;2.11e-08;69!CL:0000084;5.92e-08;25!CL:0000945;4.86e-07;24!CL:0000738;8.09e-07;136 | |||
|ontology_enrichment_celltype_v019_2=CL:0002087,3.61e-31,115;CL:0000738,5.13e-31,136;CL:0002031,4.65e-29,120;CL:0000037,1.37e-18,168;CL:0000988,6.27e-18,177;CL:0002032,4.25e-17,161;CL:0000837,4.25e-17,161;CL:0000860,1.15e-16,42;CL:0002057,1.15e-16,42;CL:0000473,4.06e-16,48;CL:0000234,4.06e-16,48;CL:0000542,2.13e-15,53;CL:0000051,2.13e-15,53;CL:0000838,3.85e-15,52;CL:0000557,1.43e-14,67;CL:0002194,2.90e-14,59;CL:0000576,2.90e-14,59;CL:0000040,2.90e-14,59;CL:0000559,2.90e-14,59;CL:0000839,3.90e-14,66;CL:0002009,3.96e-14,61;CL:0000766,4.16e-14,72;CL:0000791,4.05e-09,18;CL:0000789,4.05e-09,18;CL:0002420,4.05e-09,18;CL:0002419,4.05e-09,18;CL:0000790,4.05e-09,18;CL:0000084,2.76e-08,25;CL:0000827,2.76e-08,25;CL:0000945,5.04e-07,24;CL:0000826,5.04e-07,24 | |||
|ontology_enrichment_development_v019=CL:0002057;1.42e-12;42!CL:0000790;3.43e-09;18!CL:0000051;1.13e-08;53 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!1.66e-21!115;UBERON:0002390!4.28e-16!102;UBERON:0003061!4.28e-16!102;UBERON:0001049!4.21e-13!57;UBERON:0005068!4.21e-13!57;UBERON:0006241!4.21e-13!57;UBERON:0007135!4.21e-13!57;UBERON:0002193!1.32e-12!112;UBERON:0003080!7.44e-12!42;UBERON:0002780!7.51e-12!41;UBERON:0001890!7.51e-12!41;UBERON:0006240!7.51e-12!41;UBERON:0002616!5.80e-11!59;UBERON:0002371!1.08e-09!80;UBERON:0002020!4.20e-09!34;UBERON:0003528!4.20e-09!34;UBERON:0001893!5.38e-09!34;UBERON:0002791!1.04e-08!33;UBERON:0003075!3.62e-08!86;UBERON:0007284!3.62e-08!86;UBERON:0001869!5.78e-08!32;UBERON:0001474!1.39e-07!86;UBERON:0002346!3.15e-07!90;UBERON:0003056!4.57e-07!61;UBERON:0000178!5.71e-07!15;UBERON:0000179!5.71e-07!15;UBERON:0000463!5.71e-07!15;UBERON:0000955!6.32e-07!69;UBERON:0006238!6.32e-07!69;UBERON:0001950!6.92e-07!20 | |||
|ontology_enrichment_uberon_v019=UBERON:0002780;1.21e-09;41!UBERON:0001890;1.21e-09;41!UBERON:0000073;1.77e-08;53!UBERON:0002616;1.77e-08;53!UBERON:0003528;2.66e-08;34!UBERON:0002020;2.66e-08;34!UBERON:0001893;3.45e-08;34!UBERON:0002791;4.56e-08;32!UBERON:0000178;9.14e-08;15!UBERON:0000179;9.14e-08;15!UBERON:0000463;9.14e-08;15!UBERON:0001869;1.21e-07;32!UBERON:0001950;2.51e-07;20!UBERON:0002619;2.80e-07;22!UBERON:0007023;6.31e-07;114 | |||
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| ||
|short_description=p3@TRAF1 | |||
}} | }} |
Latest revision as of 20:14, 24 September 2015
Short description: | p3@TRAF1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_TRAF1_5end |
Coexpression cluster: | NA |
Association with transcript: | 12bp_to_ENST00000540010, NM_001190945_5end |
EntrezGene: | TRAF1 |
HGNC: | 12031 |
UniProt: | Q13077 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
adult organism | 1.85e-23 | 114 |
hematopoietic system | 6.84e-19 | 98 |
blood island | 6.84e-19 | 98 |
hemolymphoid system | 1.33e-15 | 108 |
neural tube | 3.57e-15 | 56 |
neural rod | 3.57e-15 | 56 |
future spinal cord | 3.57e-15 | 56 |
neural keel | 3.57e-15 | 56 |
regional part of nervous system | 3.32e-14 | 53 |
regional part of brain | 3.32e-14 | 53 |
regional part of forebrain | 1.53e-13 | 41 |
forebrain | 1.53e-13 | 41 |
anterior neural tube | 1.53e-13 | 41 |
future forebrain | 1.53e-13 | 41 |
bone marrow | 2.55e-11 | 76 |
immune system | 2.31e-10 | 93 |
brain grey matter | 2.39e-10 | 34 |
gray matter | 2.39e-10 | 34 |
telencephalon | 3.18e-10 | 34 |
neural plate | 6.15e-10 | 82 |
presumptive neural plate | 6.15e-10 | 82 |
regional part of telencephalon | 2.63e-09 | 32 |
neurectoderm | 4.04e-09 | 86 |
bone element | 4.82e-09 | 82 |
cerebral hemisphere | 5.03e-09 | 32 |
brain | 5.75e-09 | 68 |
future brain | 5.75e-09 | 68 |
pre-chordal neural plate | 6.48e-08 | 61 |
blood | 7.43e-08 | 15 |
haemolymphatic fluid | 7.43e-08 | 15 |
organism substance | 7.43e-08 | 15 |
neocortex | 9.30e-08 | 20 |
regional part of cerebral cortex | 1.08e-07 | 22 |
central nervous system | 3.93e-07 | 81 |
skeletal element | 6.45e-07 | 90 |