FFCP PHASE1:Mm9::chr18:37975098..37975121,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 mm9::chr18:37975098..37975121,+ to FFCP PHASE1:Mm9::chr18:37975098..37975121,+: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=NA | ||
| | |DPIdataset=NA | ||
|EntrezGene=93703,93706,93707,93708,93711,93716,93717,93723,93724 | |EntrezGene=93703,93706,93707,93708,93711,93716,93717,93723,93724 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=87 | |||
|TSSclassifier=NA | |||
|UniProt=Q91XX0 | |UniProt=Q91XX0 | ||
|association_with_transcript=365bp_to_ENSMUST00000066140,NM_033582,uc008erf.1_5end | |||
|cluster_id=chr18:37975098..37975121,+ | |||
|description=CAGE_peak_10_at_Pcdhga11_5end,CAGE_peak_10_at_Pcdhga12_5end,CAGE_peak_10_at_Pcdhga3_5end,CAGE_peak_10_at_Pcdhga8_5end,CAGE_peak_10_at_Pcdhga9_5end,CAGE_peak_10_at_Pcdhgb6_5end,CAGE_peak_10_at_Pcdhgc3_5end,CAGE_peak_10_at_Pcdhgc4_5end,CAGE_peak_10_at_Pcdhgc5_5end | |||
|id=chr18:37975098..37975121,+ | |||
|ontology_enrichment_celltype=CL:0000117!3.19e-13!23;CL:0000337!3.19e-13!23 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,1.29e-15,23;CL:0000337,1.29e-15,23;CL:0000540,7.77e-09,33;CL:0000047,7.77e-09,33;CL:0000031,7.77e-09,33;CL:0000404,7.77e-09,33;CL:0002319,8.84e-07,43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002346!3.50e-22!71;UBERON:0003075!3.50e-22!71;UBERON:0007284!3.50e-22!71;UBERON:0001049!3.54e-22!52;UBERON:0005068!3.54e-22!52;UBERON:0006241!3.54e-22!52;UBERON:0007135!3.54e-22!52;UBERON:0000033!2.72e-20!63;UBERON:0000955!4.18e-20!50;UBERON:0006238!4.18e-20!50;UBERON:0002616!1.05e-19!49;UBERON:0001017!3.72e-19!73;UBERON:0005743!3.72e-19!73;UBERON:0000073!8.31e-18!75;UBERON:0001016!8.31e-18!75;UBERON:0003056!1.28e-16!49;UBERON:0004121!3.73e-16!102;UBERON:0000924!3.73e-16!102;UBERON:0006601!3.73e-16!102;UBERON:0003080!3.24e-15!40;UBERON:0002020!1.27e-14!34;UBERON:0002780!1.52e-14!39;UBERON:0001890!1.52e-14!39;UBERON:0006240!1.52e-14!39;UBERON:0007811!8.73e-14!86;UBERON:0000153!9.24e-14!94;UBERON:0002791!4.68e-11!29;UBERON:0003528!4.68e-11!29;UBERON:0001893!4.68e-11!29;UBERON:0003076!8.65e-08!12;UBERON:0003057!8.65e-08!12 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000073,2.77e-27,54;UBERON:0001049,3.30e-25,52;UBERON:0005068,3.30e-25,52;UBERON:0006241,3.30e-25,52;UBERON:0007135,3.30e-25,52;UBERON:0002346,2.07e-24,64;UBERON:0003075,2.07e-24,64;UBERON:0007284,2.07e-24,64;UBERON:0001017,4.29e-24,73;UBERON:0001016,5.28e-23,75;UBERON:0004121,7.70e-20,95;UBERON:0000924,7.70e-20,95;UBERON:0006601,7.70e-20,95;UBERON:0000955,1.77e-19,47;UBERON:0006238,1.77e-19,47;UBERON:0010371,1.78e-19,73;UBERON:0002616,6.66e-19,46;UBERON:0003056,3.64e-17,49;UBERON:0002020,5.61e-16,34;UBERON:0003080,5.67e-16,40;UBERON:0002780,4.84e-15,39;UBERON:0001890,4.84e-15,39;UBERON:0006240,4.84e-15,39;UBERON:0010314,4.04e-13,92;UBERON:0003528,5.21e-11,29;UBERON:0002791,5.21e-11,29;UBERON:0001893,5.21e-11,29;UBERON:0003076,2.66e-10,12;UBERON:0003057,2.66e-10,12;UBERON:0002420,1.32e-09,8;UBERON:0007245,1.32e-09,8;UBERON:0010009,1.32e-09,8;UBERON:0010011,1.32e-09,8;UBERON:0000454,1.32e-09,8;UBERON:0002240,3.49e-08,6;UBERON:0005174,3.49e-08,6;UBERON:0001137,3.49e-08,6;UBERON:0001948,2.56e-07,5;UBERON:0002315,2.56e-07,5;UBERON:0000369,7.09e-07,5;UBERON:0002435,7.09e-07,5;UBERON:0000204,7.09e-07,5;UBERON:0010082,7.09e-07,5 | |||
|phase1_expression=0.640595388419176,0,0,0,0,0,0,0,0,0.234064526321993,0,0,0,0,0,0.607425802169478,0,0,0,0,0.425216450755349,0,0,0.319984845586813,0,0,0,0,0.190023419456374,0,0.443461021310609,0,0,0,0,0,0.204169356262369,0,0,0,0,0,0,0.503587271902309,0.811015449756117,0.550640256485045,1.56478268869608,0.436050312760893,0,0.388859798148567,0,0,0,0,0.336093799142464,0,0,0.515672092277442,8.49729135610311,11.6378015439847,8.87363964908651,0,0,0,0,0,0.599200221036809,1.92109152660777,0.518448061542388,0.405017814995072,0.420649922702764,14.2825492201902,22.7494597180162,0.857435594504678,1.43768206527355,1.83843757322004,5.50579404996943,4.46905683298157,4.6081959976873,6.3305418110493,11.8933936683133,5.73004707612436,4.18774498502071,4.50210088025344,3.81995619442025,18.8562294703147,14.6642831223076,13.047961207771,0,0,0,0,0,0,0,0,0.140444420131752,0,0,0,0.845060518660083,0,0,0,0,0,0,0,0,0.593768556259299,0.693941307064543,0.608930956624282,1.38369298353635,0.301445281105245,0.705532242814229,0.628332956648377,0,0,0,0.161766849947409,0.220841518460394,0,0,1.17112318804619,2.93225389538837,0,0,0,0,5.99162557619291,5.03250663100489,18.5968441127039,2.25971616249959,2.81287003063364,5.194701113989,4.2182728397617,0.407357455401265,0,0,0.210441855886474,0.390361328888111,0,0.360124259610698,1.9591626318643,2.24520447199382,2.94661556655154,1.96773621575431,4.9153640440413,1.07783996466421,0.945530400839096,1.05570674498369,0.219195732427575,1.11218899690239,0,0.205782136407943,0.59710280045548,0,0,0,0.414251545071004,0,0.180062061461015,0.23674473558521,0.196764231747404,0,0,0.268273401399619,0.233530684734339,0.16455984991348,0,0,0,0,0,1.89260953707715,2.98423375899925,0,0,0,0.696710015581316,0.257734922644187,0.201683524623343,0,0.190225626112559,0,0.164698954724011,1.00534083520108,0.994782360205754,0,0,0,0,0.189667900953082,0.228497025219458,0,0,0,0.280543279561274,0.126473074248515,0.295220295959204,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.184753190166605,0.568474235311454,0.325929952884052,0.339490171550376,0.469380496577004,0.335012514883631,0.238043640886014,0,0.315270288212382,0.664394068946325,0.318909537314974,0.163863314715738,0,0.144649058581512,0,0,0,0.275936746304732,3.37156238974363,5.04010252346474,0,0,0,0,0,0,0.222798674082394,0,0,0,0,1.60660658210904,0.141940085208269,0.178065603667255,0.162886959353576,0.164970122972535,0,0.242780636154981,0.302323556964751,0.754420319023592,1.18120757152309,0.922305443831782,0.258428293168221,1.09060118843252,0.712994756769443,0,0,1.03135543248187,5.7874732978144,0.540183282093931,1.03486947026204,0.214337035031592,1.06404140185364,1.78368817602071,1.81003922662333,4.26250928760439,0.23467170806371,0.21183207086382,0,0,0,0,0,0,0,3.52308073819968,0,0,0,0.188368457004691,0.683471138605126,0.228778173206523,0,0.139951452323658,0.138199973804424,0,0,0.406638934253697,0.108005340821801,0,0.436725127492355,0.404593039154462,0.578574190077352,0,0.129614973291793,0,0,0.747582730219894,0.330916980914195,0,0.516639293910924,0.168956125490778,0.58678619322877,0.2604087696879,0,0,0,0,0.202725215290164,0.308132871494482,0.25984164595559,0,0.198681354781265,0.240390899039938,0.295379054349154,0.403865799792591,0.685861259894999,1.00826185136841,0.38983152295901,0.0962118416403295,0.467507608726276,0,0,0,0,0,0,0,0,0,2.82375921308533,1.84130094602871,2.86447756719698,2.57779773515531,2.05524755931193,2.2661816921691,0.675022500231806,1.35096360967266,0.906284817968409,1.55328093525546,0.103787347584177,0.798049746802062,1.36586884603307,0.972426868273176,1.88651846365184,1.47074806760011,2.00022055021454,2.26638562962784,0.962757628775446,2.77966932940177,2.5347929989024,0.943131706930381,1.31098110457835,2.43295579138503,2.23998328926892,1.90517476513229,2.31768651889711,2.31491064556446,1.64834360321323,2.06078488188156,1.37147700954166,1.59728225543404,0.238436189947321,2.18019624948493,2.35273451038327,1.52306294205018,2.74391959309159,2.63069711437843,1.90125759384206,1.12228454331548,1.77952527186261,2.06859412988683,0.818462086339379,1.54936841185966,1.35034627686799,7.24450676020043,1.16965804222704,2.57845264857958,1.14772999241306,1.10295709559758,1.15933917810211 | |phase1_expression=0.640595388419176,0,0,0,0,0,0,0,0,0.234064526321993,0,0,0,0,0,0.607425802169478,0,0,0,0,0.425216450755349,0,0,0.319984845586813,0,0,0,0,0.190023419456374,0,0.443461021310609,0,0,0,0,0,0.204169356262369,0,0,0,0,0,0,0.503587271902309,0.811015449756117,0.550640256485045,1.56478268869608,0.436050312760893,0,0.388859798148567,0,0,0,0,0.336093799142464,0,0,0.515672092277442,8.49729135610311,11.6378015439847,8.87363964908651,0,0,0,0,0,0.599200221036809,1.92109152660777,0.518448061542388,0.405017814995072,0.420649922702764,14.2825492201902,22.7494597180162,0.857435594504678,1.43768206527355,1.83843757322004,5.50579404996943,4.46905683298157,4.6081959976873,6.3305418110493,11.8933936683133,5.73004707612436,4.18774498502071,4.50210088025344,3.81995619442025,18.8562294703147,14.6642831223076,13.047961207771,0,0,0,0,0,0,0,0,0.140444420131752,0,0,0,0.845060518660083,0,0,0,0,0,0,0,0,0.593768556259299,0.693941307064543,0.608930956624282,1.38369298353635,0.301445281105245,0.705532242814229,0.628332956648377,0,0,0,0.161766849947409,0.220841518460394,0,0,1.17112318804619,2.93225389538837,0,0,0,0,5.99162557619291,5.03250663100489,18.5968441127039,2.25971616249959,2.81287003063364,5.194701113989,4.2182728397617,0.407357455401265,0,0,0.210441855886474,0.390361328888111,0,0.360124259610698,1.9591626318643,2.24520447199382,2.94661556655154,1.96773621575431,4.9153640440413,1.07783996466421,0.945530400839096,1.05570674498369,0.219195732427575,1.11218899690239,0,0.205782136407943,0.59710280045548,0,0,0,0.414251545071004,0,0.180062061461015,0.23674473558521,0.196764231747404,0,0,0.268273401399619,0.233530684734339,0.16455984991348,0,0,0,0,0,1.89260953707715,2.98423375899925,0,0,0,0.696710015581316,0.257734922644187,0.201683524623343,0,0.190225626112559,0,0.164698954724011,1.00534083520108,0.994782360205754,0,0,0,0,0.189667900953082,0.228497025219458,0,0,0,0.280543279561274,0.126473074248515,0.295220295959204,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.184753190166605,0.568474235311454,0.325929952884052,0.339490171550376,0.469380496577004,0.335012514883631,0.238043640886014,0,0.315270288212382,0.664394068946325,0.318909537314974,0.163863314715738,0,0.144649058581512,0,0,0,0.275936746304732,3.37156238974363,5.04010252346474,0,0,0,0,0,0,0.222798674082394,0,0,0,0,1.60660658210904,0.141940085208269,0.178065603667255,0.162886959353576,0.164970122972535,0,0.242780636154981,0.302323556964751,0.754420319023592,1.18120757152309,0.922305443831782,0.258428293168221,1.09060118843252,0.712994756769443,0,0,1.03135543248187,5.7874732978144,0.540183282093931,1.03486947026204,0.214337035031592,1.06404140185364,1.78368817602071,1.81003922662333,4.26250928760439,0.23467170806371,0.21183207086382,0,0,0,0,0,0,0,3.52308073819968,0,0,0,0.188368457004691,0.683471138605126,0.228778173206523,0,0.139951452323658,0.138199973804424,0,0,0.406638934253697,0.108005340821801,0,0.436725127492355,0.404593039154462,0.578574190077352,0,0.129614973291793,0,0,0.747582730219894,0.330916980914195,0,0.516639293910924,0.168956125490778,0.58678619322877,0.2604087696879,0,0,0,0,0.202725215290164,0.308132871494482,0.25984164595559,0,0.198681354781265,0.240390899039938,0.295379054349154,0.403865799792591,0.685861259894999,1.00826185136841,0.38983152295901,0.0962118416403295,0.467507608726276,0,0,0,0,0,0,0,0,0,2.82375921308533,1.84130094602871,2.86447756719698,2.57779773515531,2.05524755931193,2.2661816921691,0.675022500231806,1.35096360967266,0.906284817968409,1.55328093525546,0.103787347584177,0.798049746802062,1.36586884603307,0.972426868273176,1.88651846365184,1.47074806760011,2.00022055021454,2.26638562962784,0.962757628775446,2.77966932940177,2.5347929989024,0.943131706930381,1.31098110457835,2.43295579138503,2.23998328926892,1.90517476513229,2.31768651889711,2.31491064556446,1.64834360321323,2.06078488188156,1.37147700954166,1.59728225543404,0.238436189947321,2.18019624948493,2.35273451038327,1.52306294205018,2.74391959309159,2.63069711437843,1.90125759384206,1.12228454331548,1.77952527186261,2.06859412988683,0.818462086339379,1.54936841185966,1.35034627686799,7.24450676020043,1.16965804222704,2.57845264857958,1.14772999241306,1.10295709559758,1.15933917810211 | ||
|short_description=p10@Pcdhga11,p10@Pcdhga12,p10@Pcdhga3,p10@Pcdhga8,p10@Pcdhga9,p10@Pcdhgb6,p10@Pcdhgc3,p10@Pcdhgc4,p10@Pcdhgc5 | |||
}} | }} |
Latest revision as of 06:00, 27 September 2015
Short description: | p10@Pcdhga11, p10@Pcdhga12, p10@Pcdhga3, p10@Pcdhga8, p10@Pcdhga9, p10@Pcdhgb6, p10@Pcdhgc3, p10@Pcdhgc4, p10@Pcdhgc5 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_10_at_Pcdhga11_5end, CAGE_peak_10_at_Pcdhga12_5end, CAGE_peak_10_at_Pcdhga3_5end, CAGE_peak_10_at_Pcdhga8_5end, CAGE_peak_10_at_Pcdhga9_5end, CAGE_peak_10_at_Pcdhgb6_5end, CAGE_peak_10_at_Pcdhgc3_5end, CAGE_peak_10_at_Pcdhgc4_5end, CAGE_peak_10_at_Pcdhgc5_5end |
Coexpression cluster: | MCL_coexpression_mm9:87 |
Association with transcript: | 365bp_to_ENSMUST00000066140, NM_033582, uc008erf.1_5end |
EntrezGene: | 93703,93706,93707,93708,93711,93716,93717,93723,93724 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 1.29e-15 | 23 |
neuroblast (sensu Vertebrata) | 1.29e-15 | 23 |
neuron | 7.77e-09 | 33 |
neuronal stem cell | 7.77e-09 | 33 |
neuroblast | 7.77e-09 | 33 |
electrically signaling cell | 7.77e-09 | 33 |
neural cell | 8.84e-07 | 43 |