FF:11343-117G2: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{f5samples
|id=FF:11343-117G2
|name=Endothelial Cells - Thoracic, donor2
|sample_id=11343
|rna_tube_id=117G2
|rna_box=117
|rna_position=G2
|sample_cell_lot=N/A
|sampl...") |
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{{f5samples | {{f5samples | ||
| | |DRA_sample_Accession=CAGE@SAMD00004966 | ||
| | |DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00004966 | ||
|accession_numbers=CAGE;DRX008230;DRR009102;DRZ000527;DRZ001912;DRZ011877;DRZ013262 | |||
|accession_numbers_RNASeq=sRNA-Seq;DRX037078;DRR041444;DRZ007086 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000947,UBERON:0001637,UBERON:0002100,UBERON:0000483,UBERON:0000479,UBERON:0000055,UBERON:0000064,UBERON:0000062,UBERON:0004111,UBERON:0000475,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0003914,UBERON:0000025,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0000490,UBERON:0006914,UBERON:0009569,UBERON:0004573,UBERON:0000487,UBERON:0005800,UBERON:0003509,UBERON:0004638,UBERON:0003915,UBERON:0004700,UBERON:0007500,UBERON:0001981,UBERON:0002049,UBERON:0001986,UBERON:0010317,UBERON:0007798,UBERON:0004852,UBERON:0001515,UBERON:0001917,UBERON:0004535,UBERON:0004571,UBERON:0010191,UBERON:0000915,UBERON:0004572,UBERON:0004537,UBERON:0001009 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000076,CL:0002139,CL:0000213,CL:0002078,CL:0000215,CL:0000255,CL:0000115,CL:0000071,CL:1000413,CL:0002544,CL:0002545 | |||
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|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
| | |ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000046,FF:0000047,FF:0000048,FF:0000001,FF:0000051 | ||
|comment= | |||
|created_by= | |||
|creation_date= | |||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |||
|expression_enrichment_score=chr20:62680984..62680999,-!p1@SOX18!2.49!400.21!SOX18;;chr8:55370487..55370503,+!p1@SOX17!2.27!184.71!SOX17;;chr21:39870339..39870443,-!p1@ERG!2.10!124.76!ERG;;chr8:10588010..10588030,-!p1@SOX7!1.93!84.25!SOX7;;chr22:19748231..19748317,+!p1@TBX1!1.92!81.82!TBX1;;chr2:177053386..177053402,+!p1@HOXD1!1.88!75.34!HOXD1;;chr17:6926362..6926377,+!p1@BCL6B!1.88!74.53!BCL6B;;chr1:6479968..6479986,-!p1@HES2!1.85!70.48!HES2;;chr19:13213511..13213545,-!p2@LYL1!1.65!47.80!LYL1;;chr12:96588368..96588394,+!p3@ELK3!1.53!86.69!ELK3;;chr18:53068911..53068935,-!p4@TCF4!1.46!31.60!TCF4;;chr6:126070769..126070801,+!p1@HEY2!1.44!30.79!HEY2;;chr10:94449703..94449718,+!p1@HHEX!1.43!97.22!HHEX;;chr16:86600426..86600441,+!p1@FOXC2!1.43!62.38!FOXC2;;chr19:13213662..13213686,-!p1@LYL1!1.38!34.03!LYL1;;chr19:13213399..13213414,-!p6@LYL1!1.31!19.44!LYL1;;chr7:27205136..27205164,-!p1@HOXA9!1.26!17.01!HOXA9;;chr1:209979467..209979494,-!p1@IRF6!1.17!15.39!IRF6;;chr17:46655672..46655697,-!p3@HOXB4!1.17!13.77!HOXB4;;chr17:46688334..46688385,-!p1@HOXB7!1.14!18.63!HOXB7;;chr20:62680671..62680679,-!p2@SOX18!1.09!11.34!SOX18;;chr6:34204921..34204939,+!p3@HMGA1!1.07!327.30!HMGA1;;chr11:65429891..65429915,-!p7@RELA!1.06!10.53!RELA;;chr17:41622925..41622976,-!p3@ETV4!1.05!15.39!ETV4;;chr20:48599506..48599526,+!p1@SNAI1!1.01!60.76!SNAI1;;chr3:128206762..128206781,-!p2@GATA2!1.00!57.52!GATA2;;chr18:22932080..22932170,-!p1@ZNF521!1.00!38.89!ZNF521;;chr17:46682321..46682362,-!p1@HOXB6!1.00!8.91!HOXB6;;chr7:27205106..27205134,-!p2@HOXA9!1.00!8.91!HOXA9;;chr18:19749541..19749557,+!p1@GATA6!0.98!27.54!GATA6;;chr3:169381420..169381535,-!p1@MECOM!0.97!9.72!MECOM;;chr6:21593973..21593988,+!p1@SOX4!0.95!292.46!SOX4;;chr1:151032860..151032918,+!p1@MLLT11!0.94!93.98!MLLT11;;chr5:92918919..92918942,+!p1@NR2F1!0.93!34.84!NR2F1;;chr16:86601052..86601066,+!p4@FOXC2!0.92!7.29!FOXC2;;chr19:13213555..13213568,-!p5@LYL1!0.92!7.29!LYL1;;chr13:79177703..79177729,-!p2@POU4F1!0.92!7.29!POU4F1;;chr19:49865646..49865718,-!p1@TEAD2!0.91!63.19!TEAD2;;chr22:38597987..38598021,+!p2@MAFF!0.90!44.56!MAFF;;chr10:94449675..94449694,+!p2@HHEX!0.90!19.44!HHEX;;chr17:46655704..46655718,-!p2@HOXB4!0.90!10.53!HOXB4;;chr17:46687959..46688007,-!p2@HOXB7!0.90!9.72!HOXB7;;chr2:46524537..46524553,+!p1@EPAS1!0.89!703.20!EPAS1;;chr12:124873357..124873401,-!p1@NCOR2!0.89!81.82!NCOR2;;chr12:66218255..66218304,+!p3@HMGA2!0.88!18.63!HMGA2;;chr6:21594845..21594908,+!p6@SOX4!0.87!10.53!SOX4;;chr6:28321971..28321995,-!p1@ZNF323!0.87!6.48!ZNF323;;chr14:74256787..74256858,-!p6@C14orf43!0.87!6.48!C14orf43;;chr1:47695003..47695042,-!p2@TAL1!0.87!6.48!TAL1;;chr17:46690839..46690884,-!p1@HOXB8!0.87!6.48!HOXB8;;chr17:46691732..46691766,-!p4@HOXB8!0.87!6.48!HOXB8;;chr20:42543506..42543549,+!p2@TOX2!0.85!15.39!TOX2;;chr17:1958388..1958404,+!p1@HIC1!0.84!40.51!HIC1;;chr2:46602901..46602926,+!p7@EPAS1!0.84!8.10!EPAS1;;chr20:42543441..42543497,+!p1@TOX2!0.82!26.73!TOX2;;chr14:24837368..24837401,+!p1@NFATC4!0.82!13.77!NFATC4;;chr6:21597600..21597664,+!p3@SOX4!0.82!9.72!SOX4;;chr19:53496768..53496799,-!p1@ZNF702P!0.82!8.91!ZNF702P;;chr16:30406423..30406447,+!p4@ZNF48!0.82!5.67!ZNF48;;chr16:86600870..86600921,+!p2@FOXC2!0.82!5.67!FOXC2;;chr2:176994408..176994492,+!p1@HOXD8!0.82!5.67!HOXD8;;chr6:21597765..21597779,+!p2@SOX4!0.81!47.80!SOX4;;chr1:935467..935484,-!p1@HES4!0.80!25.11!HES4;;chr2:46602879..46602899,+!p8@EPAS1!0.80!6.48!EPAS1;;chr12:124873852..124873881,-!p3@NCOR2!0.79!34.03!NCOR2;;chr7:26191809..26191890,+!p1@NFE2L3!0.79!27.54!NFE2L3;;chr17:38498594..38498661,+!p2@RARA!0.79!18.63!RARA;;chr6:85474299..85474324,-!p1@TBX18!0.79!9.72!TBX18;;chr19:49864746..49864780,-!p2@TEAD2!0.79!7.29!TEAD2;;chr17:3571863..3571881,-!p1@TAX1BP3!0.77!379.96!TAX1BP3;;chr6:21597370..21597408,+!p5@SOX4!0.77!8.10!SOX4;;chr3:25469724..25469773,+!p1@RARB!0.77!7.29!RARB;;chr3:169381183..169381205,-!p4@MECOM!0.77!4.86!MECOM;;chr7:27183291..27183324,-!p1@HOXA5!0.77!4.86!HOXA5;;chr8:55370720..55370733,+!p2@SOX17!0.77!4.86!SOX17;;chr16:86601088..86601105,+!p5@FOXC2!0.77!4.86!FOXC2;;chr19:13213465..13213478,-!p7@LYL1!0.77!4.86!LYL1;;chr19:9732460..9732472,-!p2@ZNF561!0.77!4.86!ZNF561;;chr9:16705069..16705086,-!p3@BNC2!0.77!4.86!BNC2;;chr4:2263809..2263854,-!p1@MXD4!0.76!204.16!MXD4;;chr14:74226961..74227020,-!p1@C14orf43!0.75!34.03!C14orf43;;chr3:168864315..168864339,-!p2@MECOM!0.75!8.10!MECOM;;chr1:935496..935509,-!p3@HES4!0.75!7.29!HES4;;chr19:1652555..1652568,-!p2@TCF3!0.74!20.25!TCF3;;chr1:23885981..23886002,-!p1@ID3!0.72!841.74!ID3;;chr12:66218598..66218645,+!p2@HMGA2!0.72!21.87!HMGA2;;chr6:126240380..126240430,+!p2@NCOA7!0.72!12.15!NCOA7;;chr12:80084137..80084165,-!p10@PAWR!0.72!5.67!PAWR;;chr12:66218836..66218888,+!p1@HMGA2!0.71!43.75!HMGA2;;chr3:178789522..178789564,-!p2@ZMAT3!0.71!34.03!ZMAT3;;chr13:72441315..72441454,-!p1@DACH1!0.71!8.91!DACH1;;chr3:170076314..170076334,+!p2@SKIL!0.71!5.67!SKIL;;chr3:25469815..25469866,+!p3@RARB!0.70!4.05!RARB;;chr3:25470062..25470084,+!p4@RARB!0.70!4.05!RARB;;chr3: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| |||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000066;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000071;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000076;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000115;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000213;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002078;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002139;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002544;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002545;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:1000413;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000487;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000947;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001637;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001981;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0004573;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0006914;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0007798 | |||
|ffid_belonging_in_development=CL:0002546,CL:0000222 | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
Line 67: | Line 43: | ||
|fonse_treatment= | |fonse_treatment= | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Endothelial%2520Cells%2520-%2520Thoracic%252c%2520donor2.CNhs11978.11343-117G2.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Endothelial%2520Cells%2520-%2520Thoracic%252c%2520donor2.CNhs11978.11343-117G2.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Endothelial%2520Cells%2520-%2520Thoracic%252c%2520donor2.CNhs11978.11343-117G2.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Endothelial%2520Cells%2520-%2520Thoracic%252c%2520donor2.CNhs11978.11343-117G2.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Endothelial%2520Cells%2520-%2520Thoracic%252c%2520donor2.CNhs11978.11343-117G2.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11343-117G2 | |||
|is_a=EFO:0002091;;FF:0000051 | |||
|is_obsolete= | |||
|library_id=CNhs11978 | |||
|library_id_phase_based=2:CNhs11978 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11343 | |||
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10006.AGTCAA.11343 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11343 | |||
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10006.AGTCAA.11343 | |||
|name=Endothelial Cells - Thoracic, donor2 | |||
|namespace=FANTOM5 | |||
|part_of= | |||
|profile_cagescan=,,, | |||
|profile_hcage=CNhs11978,LSID836,release011,COMPLETED | |||
|profile_rnaseq= | |||
|profile_srnaseq=SRhi10006,,, | |||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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| |||
|rna_box=117 | |||
|rna_catalog_number=CA308-R10a | |||
|rna_concentration=0.53 | |||
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0 | |||
|rna_lot_number=1555 | |||
|rna_od260/230= | |||
|rna_od260/280= | |||
|rna_position=G2 | |||
|rna_rin= | |||
|rna_sample_type=total RNA | |||
|rna_tube_id=117G2 | |||
|rna_weight_ug=10 | |||
|rnaseq_library_id=SRhi10006.AGTCAA | |||
|sample_age=50 | |||
|sample_category=primary cells | |||
|sample_cell_catalog=N/A | |||
|sample_cell_line= | |||
|sample_cell_lot=N/A | |||
|sample_cell_type=blood vessel endothelial cell | |||
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest) | |||
|sample_company=Cell Applications | |||
|sample_description= | |||
|sample_dev_stage=50 years old adult | |||
|sample_disease= | |||
|sample_donor(cell lot)= | |||
|sample_ethnicity=C | |||
|sample_experimental_condition= | |||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;2.6557810889316e-210!GO:0005737;cytoplasm;2.78293427134986e-184!GO:0043226;organelle;2.13893191407353e-155!GO:0043229;intracellular organelle;4.17521740677285e-155!GO:0043231;intracellular membrane-bound organelle;7.41588643657407e-150!GO:0043227;membrane-bound organelle;1.38907886264684e-149!GO:0044444;cytoplasmic part;3.73632694386558e-136!GO:0044422;organelle part;3.17005069148364e-119!GO:0044446;intracellular organelle part;5.50574165247774e-118!GO:0005515;protein binding;3.13435556562074e-84!GO:0032991;macromolecular complex;6.66187365302312e-84!GO:0030529;ribonucleoprotein complex;9.75804080343555e-77!GO:0044238;primary metabolic process;9.64148145307365e-70!GO:0044237;cellular metabolic process;3.01935098337964e-69!GO:0005739;mitochondrion;5.4473556581939e-64!GO:0043170;macromolecule metabolic process;6.60396199698468e-64!GO:0043233;organelle lumen;2.16909135325312e-59!GO:0031974;membrane-enclosed lumen;2.16909135325312e-59!GO:0003723;RNA binding;1.66740561363664e-56!GO:0019538;protein metabolic process;3.27428353751209e-53!GO:0005840;ribosome;1.41745188925637e-51!GO:0044428;nuclear part;1.43416894585243e-50!GO:0031090;organelle membrane;1.75036879679832e-50!GO:0044260;cellular macromolecule metabolic process;3.03382711722179e-47!GO:0044267;cellular protein metabolic process;4.92424637554802e-47!GO:0006412;translation;4.64554802757948e-46!GO:0003735;structural constituent of ribosome;1.67882436151015e-45!GO:0005634;nucleus;5.15384040630253e-45!GO:0016043;cellular component organization and biogenesis;1.54983465984047e-42!GO:0044429;mitochondrial part;2.02131981270865e-42!GO:0043234;protein complex;1.59550520673154e-41!GO:0033279;ribosomal subunit;2.01108029874686e-39!GO:0005829;cytosol;5.26688124225774e-39!GO:0009058;biosynthetic process;4.14173163460333e-37!GO:0009059;macromolecule biosynthetic process;5.68547161471468e-37!GO:0044249;cellular biosynthetic process;2.47007839489923e-36!GO:0006396;RNA processing;1.7309561025011e-35!GO:0015031;protein transport;4.9821346223553e-35!GO:0031967;organelle envelope;6.85103506025706e-35!GO:0033036;macromolecule localization;1.26936834886869e-34!GO:0031975;envelope;1.44469187676734e-34!GO:0031981;nuclear lumen;1.55214265664232e-33!GO:0045184;establishment of protein localization;1.48623106557948e-32!GO:0008104;protein localization;2.56264006994344e-32!GO:0043283;biopolymer metabolic process;1.83759804461892e-30!GO:0005830;cytosolic ribosome (sensu Eukaryota);1.74941021235321e-29!GO:0005740;mitochondrial envelope;3.56343052173511e-29!GO:0016071;mRNA metabolic process;2.11053317682365e-28!GO:0046907;intracellular transport;1.33903520353216e-27!GO:0031966;mitochondrial membrane;2.66722784626442e-27!GO:0043228;non-membrane-bound organelle;3.82266749133852e-27!GO:0043232;intracellular non-membrane-bound organelle;3.82266749133852e-27!GO:0065003;macromolecular complex assembly;4.35882519165667e-27!GO:0006996;organelle organization and biogenesis;2.07361907524475e-26!GO:0019866;organelle inner membrane;2.36968809645664e-26!GO:0008380;RNA splicing;2.66960576952291e-26!GO:0010467;gene expression;1.06070142391996e-25!GO:0005743;mitochondrial inner membrane;1.23692745923593e-24!GO:0006886;intracellular protein transport;2.81340973421844e-24!GO:0006397;mRNA processing;3.06964933150525e-24!GO:0044445;cytosolic part;3.23705080240577e-24!GO:0022613;ribonucleoprotein complex biogenesis and assembly;4.4582157456011e-24!GO:0022607;cellular component assembly;8.97178234988353e-24!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;9.73307470078538e-22!GO:0006119;oxidative phosphorylation;1.10182030406138e-21!GO:0015934;large ribosomal subunit;1.40276308829029e-20!GO:0012505;endomembrane system;4.31710774054398e-20!GO:0005654;nucleoplasm;6.88623302966392e-20!GO:0015935;small ribosomal subunit;7.57022526994669e-20!GO:0044455;mitochondrial membrane part;7.71431979808505e-20!GO:0005794;Golgi apparatus;8.56589940937352e-20!GO:0005783;endoplasmic reticulum;2.50894036312599e-19!GO:0005681;spliceosome;6.92999508848649e-19!GO:0016462;pyrophosphatase activity;1.18590906671398e-18!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;1.41647156013294e-18!GO:0000166;nucleotide binding;1.55058163687758e-18!GO:0016817;hydrolase activity, acting on acid anhydrides;1.68210084265199e-18!GO:0017111;nucleoside-triphosphatase activity;1.71523892451201e-18!GO:0051649;establishment of cellular localization;2.56794836933269e-18!GO:0051641;cellular localization;4.05148166088058e-18!GO:0006457;protein folding;8.28063972572258e-18!GO:0005746;mitochondrial respiratory chain;9.91906061343863e-17!GO:0006259;DNA metabolic process;1.20064391683615e-16!GO:0044451;nucleoplasm part;1.78364104523479e-16!GO:0008134;transcription factor binding;2.09040830033525e-16!GO:0044432;endoplasmic reticulum part;2.12186016489144e-16!GO:0031980;mitochondrial lumen;2.25305254695623e-16!GO:0005759;mitochondrial matrix;2.25305254695623e-16!GO:0048770;pigment granule;1.05610130022566e-15!GO:0042470;melanosome;1.05610130022566e-15!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;1.78847172216689e-15!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);2.28067887185775e-15!GO:0016874;ligase activity;2.30643118714534e-15!GO:0043285;biopolymer catabolic process;4.13297408303491e-15!GO:0043412;biopolymer modification;5.83600717187007e-15!GO:0006512;ubiquitin cycle;6.48131263649227e-15!GO:0050136;NADH dehydrogenase (quinone) activity;1.00718276298653e-14!GO:0003954;NADH dehydrogenase activity;1.00718276298653e-14!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.00718276298653e-14!GO:0000502;proteasome complex (sensu Eukaryota);1.029900311783e-14!GO:0005730;nucleolus;1.13002921925313e-14!GO:0044265;cellular macromolecule catabolic process;1.70919540843299e-14!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);1.76334045174604e-14!GO:0009057;macromolecule catabolic process;1.86646885361309e-14!GO:0016192;vesicle-mediated transport;2.08622127269736e-14!GO:0012501;programmed cell death;3.09506205864161e-14!GO:0022618;protein-RNA complex assembly;3.18526073387917e-14!GO:0006464;protein modification process;4.19671972761092e-14!GO:0006915;apoptosis;4.42745807028964e-14!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;4.65294491319631e-14!GO:0006605;protein targeting;4.79248141721624e-14!GO:0032553;ribonucleotide binding;5.20503651877655e-14!GO:0032555;purine ribonucleotide binding;5.20503651877655e-14!GO:0017076;purine nucleotide binding;6.85436207050588e-14!GO:0051186;cofactor metabolic process;8.51400824562794e-14!GO:0005761;mitochondrial ribosome;1.3669755508579e-13!GO:0000313;organellar ribosome;1.3669755508579e-13!GO:0030163;protein catabolic process;1.86206794921086e-13!GO:0051603;proteolysis involved in cellular protein catabolic process;1.98714214757053e-13!GO:0019941;modification-dependent protein catabolic process;2.78584850750903e-13!GO:0043632;modification-dependent macromolecule catabolic process;2.78584850750903e-13!GO:0044257;cellular protein catabolic process;3.27987075230668e-13!GO:0006511;ubiquitin-dependent protein catabolic process;6.04382523617823e-13!GO:0008219;cell death;8.20791716749074e-13!GO:0016265;death;8.20791716749074e-13!GO:0007049;cell cycle;9.07286386629729e-13!GO:0030964;NADH dehydrogenase complex (quinone);9.11583128858891e-13!GO:0045271;respiratory chain complex I;9.11583128858891e-13!GO:0005747;mitochondrial respiratory chain complex I;9.11583128858891e-13!GO:0042775;organelle ATP synthesis coupled electron transport;1.50990721018998e-12!GO:0042773;ATP synthesis coupled electron transport;1.50990721018998e-12!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;2.95351416594724e-12!GO:0044248;cellular catabolic process;2.95351416594724e-12!GO:0051082;unfolded protein binding;3.65110912070573e-12!GO:0008135;translation factor activity, nucleic acid binding;5.78161058655015e-12!GO:0048193;Golgi vesicle transport;6.12665770712815e-12!GO:0043687;post-translational protein modification;1.10311287683552e-11!GO:0042175;nuclear envelope-endoplasmic reticulum network;1.38701780217748e-11!GO:0003712;transcription cofactor activity;2.663281430306e-11!GO:0005789;endoplasmic reticulum membrane;2.92043390139834e-11!GO:0048523;negative regulation of cellular process;4.7553104977359e-11!GO:0000398;nuclear mRNA splicing, via spliceosome;6.14975250935146e-11!GO:0000375;RNA splicing, via transesterification reactions;6.14975250935146e-11!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;6.14975250935146e-11!GO:0005793;ER-Golgi intermediate compartment;1.0271801864447e-10!GO:0006732;coenzyme metabolic process;1.37431587530078e-10!GO:0032559;adenyl ribonucleotide binding;1.43986122041506e-10!GO:0005524;ATP binding;1.48893392797976e-10!GO:0022402;cell cycle process;2.09022425483145e-10!GO:0009055;electron carrier activity;2.09942101879098e-10!GO:0030554;adenyl nucleotide binding;2.41415249606627e-10!GO:0009259;ribonucleotide metabolic process;2.70007183324201e-10!GO:0042254;ribosome biogenesis and assembly;3.09414969123604e-10!GO:0009150;purine ribonucleotide metabolic process;3.5490652105503e-10!GO:0006163;purine nucleotide metabolic process;4.49197560297693e-10!GO:0048519;negative regulation of biological process;8.67993482676098e-10!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.03774986739789e-09!GO:0042623;ATPase activity, coupled;2.07947539351559e-09!GO:0008639;small protein conjugating enzyme activity;2.39159899566738e-09!GO:0003743;translation initiation factor activity;2.39882419214057e-09!GO:0009152;purine ribonucleotide biosynthetic process;2.39966074446224e-09!GO:0016887;ATPase activity;2.45928001657168e-09!GO:0009199;ribonucleoside triphosphate metabolic process;2.57249240999383e-09!GO:0006164;purine nucleotide biosynthetic process;3.11737888440466e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;3.49761574581555e-09!GO:0004842;ubiquitin-protein ligase activity;4.19918814434796e-09!GO:0009141;nucleoside triphosphate metabolic process;4.33735981826755e-09!GO:0043067;regulation of programmed cell death;4.52697763344828e-09!GO:0042981;regulation of apoptosis;4.52697763344828e-09!GO:0009205;purine ribonucleoside triphosphate metabolic process;4.52777507716974e-09!GO:0009144;purine nucleoside triphosphate metabolic process;4.52777507716974e-09!GO:0009260;ribonucleotide biosynthetic process;5.26427390295429e-09!GO:0051726;regulation of cell cycle;5.55467582443769e-09!GO:0006413;translational initiation;6.66288693838226e-09!GO:0009142;nucleoside triphosphate biosynthetic process;7.23326756412902e-09!GO:0009201;ribonucleoside triphosphate biosynthetic process;7.23326756412902e-09!GO:0006461;protein complex assembly;8.88392416391897e-09!GO:0019787;small conjugating protein ligase activity;9.1195459769712e-09!GO:0000074;regulation of progression through cell cycle;1.11359426667106e-08!GO:0044431;Golgi apparatus part;1.19413696659932e-08!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;1.30609482542772e-08!GO:0009145;purine nucleoside triphosphate biosynthetic process;1.30609482542772e-08!GO:0006446;regulation of translational initiation;1.82484754943355e-08!GO:0015986;ATP synthesis coupled proton transport;1.92582595233424e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;1.92582595233424e-08!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;3.03301205307032e-08!GO:0006913;nucleocytoplasmic transport;3.60860753049465e-08!GO:0006325;establishment and/or maintenance of chromatin architecture;3.88216574583232e-08!GO:0008565;protein transporter activity;4.37580196233926e-08!GO:0016023;cytoplasmic membrane-bound vesicle;4.67524605772159e-08!GO:0003676;nucleic acid binding;4.94768100179678e-08!GO:0006793;phosphorus metabolic process;4.94768100179678e-08!GO:0006796;phosphate metabolic process;4.94768100179678e-08!GO:0000278;mitotic cell cycle;5.17817495474478e-08!GO:0016879;ligase activity, forming carbon-nitrogen bonds;5.89738015897984e-08!GO:0031988;membrane-bound vesicle;6.81759678920971e-08!GO:0051169;nuclear transport;7.26247332043176e-08!GO:0019829;cation-transporting ATPase activity;7.68013301809512e-08!GO:0009056;catabolic process;8.00223966939872e-08!GO:0046034;ATP metabolic process;8.1543462288571e-08!GO:0006366;transcription from RNA polymerase II promoter;9.48386111100794e-08!GO:0016604;nuclear body;9.60713157104328e-08!GO:0003924;GTPase activity;1.21557709557727e-07!GO:0051276;chromosome organization and biogenesis;1.21579329471926e-07!GO:0007249;I-kappaB kinase/NF-kappaB cascade;1.21579329471926e-07!GO:0016881;acid-amino acid ligase activity;1.29719036790693e-07!GO:0006323;DNA packaging;1.39040370970065e-07!GO:0017038;protein import;1.53823233858343e-07!GO:0030532;small nuclear ribonucleoprotein complex;1.67548859756861e-07!GO:0016070;RNA metabolic process;1.70241809918467e-07!GO:0005788;endoplasmic reticulum lumen;1.72707941288018e-07!GO:0043069;negative regulation of programmed cell death;1.79641478880128e-07!GO:0006754;ATP biosynthetic process;2.00612581373604e-07!GO:0006753;nucleoside phosphate metabolic process;2.00612581373604e-07!GO:0016310;phosphorylation;2.06401683573816e-07!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;2.29519281102312e-07!GO:0044453;nuclear membrane part;2.44708517018629e-07!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;2.61673838875491e-07!GO:0050794;regulation of cellular process;2.67413002882926e-07!GO:0005635;nuclear envelope;2.82363765161185e-07!GO:0006974;response to DNA damage stimulus;2.82363765161185e-07!GO:0043066;negative regulation of apoptosis;2.87428781210162e-07!GO:0009117;nucleotide metabolic process;3.18208703425232e-07!GO:0051246;regulation of protein metabolic process;3.18208703425232e-07!GO:0005773;vacuole;3.21939033379446e-07!GO:0005768;endosome;3.32556932406358e-07!GO:0051188;cofactor biosynthetic process;3.38639500830554e-07!GO:0009060;aerobic respiration;3.52969578439214e-07!GO:0006916;anti-apoptosis;5.07724302394479e-07!GO:0006888;ER to Golgi vesicle-mediated transport;5.28279769949893e-07!GO:0000139;Golgi membrane;5.42060787257068e-07!GO:0031252;leading edge;5.45882514417771e-07!GO:0015078;hydrogen ion transmembrane transporter activity;6.68039744986408e-07!GO:0006364;rRNA processing;7.50478659473116e-07!GO:0030120;vesicle coat;8.27073003943106e-07!GO:0030662;coated vesicle membrane;8.27073003943106e-07!GO:0006399;tRNA metabolic process;8.9367431733913e-07!GO:0045333;cellular respiration;9.02348396488555e-07!GO:0016072;rRNA metabolic process;1.05373299968819e-06!GO:0031982;vesicle;1.15161951785253e-06!GO:0031410;cytoplasmic vesicle;1.22276198742572e-06!GO:0031965;nuclear membrane;1.24457726732948e-06!GO:0030036;actin cytoskeleton organization and biogenesis;1.92285311734805e-06!GO:0045786;negative regulation of progression through cell cycle;1.93592446628211e-06!GO:0045259;proton-transporting ATP synthase complex;2.1221626477511e-06!GO:0048475;coated membrane;2.16209771926795e-06!GO:0030117;membrane coat;2.16209771926795e-06!GO:0016787;hydrolase activity;2.73325852115868e-06!GO:0065004;protein-DNA complex assembly;3.04024859192499e-06!GO:0016491;oxidoreductase activity;3.04024859192499e-06!GO:0016469;proton-transporting two-sector ATPase complex;3.07858266101226e-06!GO:0005525;GTP binding;4.04567255385799e-06!GO:0048522;positive regulation of cellular process;4.1761262500471e-06!GO:0006333;chromatin assembly or disassembly;4.20969883907419e-06!GO:0000323;lytic vacuole;4.26023989763811e-06!GO:0005764;lysosome;4.26023989763811e-06!GO:0003713;transcription coactivator activity;4.48803094607225e-06!GO:0032446;protein modification by small protein conjugation;5.16264368565074e-06!GO:0005839;proteasome core complex (sensu Eukaryota);5.61435355596147e-06!GO:0005694;chromosome;6.33136855495967e-06!GO:0065002;intracellular protein transport across a membrane;6.91454442148316e-06!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;7.27909260987229e-06!GO:0004812;aminoacyl-tRNA ligase activity;7.27909260987229e-06!GO:0016875;ligase activity, forming carbon-oxygen bonds;7.27909260987229e-06!GO:0016740;transferase activity;7.47768395451566e-06!GO:0004386;helicase activity;7.50926403735001e-06!GO:0007005;mitochondrion organization and biogenesis;7.96503991502385e-06!GO:0000785;chromatin;8.53990763746364e-06!GO:0016567;protein ubiquitination;8.53990763746364e-06!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;8.59533245824416e-06!GO:0005770;late endosome;9.24684705585381e-06!GO:0006281;DNA repair;9.65823271635372e-06!GO:0008026;ATP-dependent helicase activity;1.02309137977209e-05!GO:0006099;tricarboxylic acid cycle;1.18313773915011e-05!GO:0046356;acetyl-CoA catabolic process;1.18313773915011e-05!GO:0009108;coenzyme biosynthetic process;1.19155149096808e-05!GO:0030029;actin filament-based process;1.19734005590695e-05!GO:0007264;small GTPase mediated signal transduction;1.21779332023601e-05!GO:0016607;nuclear speck;1.25904201247698e-05!GO:0044427;chromosomal part;1.33880189897881e-05!GO:0043038;amino acid activation;1.4746409347487e-05!GO:0006418;tRNA aminoacylation for protein translation;1.4746409347487e-05!GO:0043039;tRNA aminoacylation;1.4746409347487e-05!GO:0005762;mitochondrial large ribosomal subunit;1.59522997177999e-05!GO:0000315;organellar large ribosomal subunit;1.59522997177999e-05!GO:0016044;membrane organization and biogenesis;1.62806105208527e-05!GO:0006260;DNA replication;1.69605070597621e-05!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;1.78847567625273e-05!GO:0015399;primary active transmembrane transporter activity;1.78847567625273e-05!GO:0009719;response to endogenous stimulus;1.80052354147374e-05!GO:0044440;endosomal part;1.802151038543e-05!GO:0010008;endosome membrane;1.802151038543e-05!GO:0005769;early endosome;1.88476917906447e-05!GO:0006752;group transfer coenzyme metabolic process;1.99700640470219e-05!GO:0003714;transcription corepressor activity;2.1270735951051e-05!GO:0016563;transcription activator activity;2.18109296671766e-05!GO:0005643;nuclear pore;2.18109296671766e-05!GO:0005667;transcription factor complex;2.68564550444934e-05!GO:0005905;coated pit;2.76072341493345e-05!GO:0051187;cofactor catabolic process;3.33202319250058e-05!GO:0006084;acetyl-CoA metabolic process;3.814214294967e-05!GO:0007243;protein kinase cascade;3.87644018788634e-05!GO:0045454;cell redox homeostasis;3.9456132567505e-05!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;4.28339718510255e-05!GO:0016564;transcription repressor activity;4.54219470194822e-05!GO:0000245;spliceosome assembly;4.64914573944207e-05!GO:0019843;rRNA binding;4.67161562197487e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;4.81165711436404e-05!GO:0004298;threonine endopeptidase activity;4.9781236898047e-05!GO:0006091;generation of precursor metabolites and energy;5.05810172103902e-05!GO:0003697;single-stranded DNA binding;5.34791219162686e-05!GO:0032561;guanyl ribonucleotide binding;5.3824724085825e-05!GO:0019001;guanyl nucleotide binding;5.3824724085825e-05!GO:0046930;pore complex;6.37897673613703e-05!GO:0050789;regulation of biological process;6.41427065064313e-05!GO:0005798;Golgi-associated vesicle;6.51010518519201e-05!GO:0051301;cell division;7.13693400940769e-05!GO:0000151;ubiquitin ligase complex;7.22240064722878e-05!GO:0008047;enzyme activator activity;7.29672238424305e-05!GO:0016568;chromatin modification;7.37235460719102e-05!GO:0051170;nuclear import;7.66112059089424e-05!GO:0019899;enzyme binding;7.73754937661646e-05!GO:0016772;transferase activity, transferring phosphorus-containing groups;7.95344125681877e-05!GO:0033116;ER-Golgi intermediate compartment membrane;8.13495472461118e-05!GO:0006334;nucleosome assembly;8.6851893717473e-05!GO:0009109;coenzyme catabolic process;9.16955230138273e-05!GO:0031968;organelle outer membrane;9.81896044260546e-05!GO:0030867;rough endoplasmic reticulum membrane;0.000101859463634327!GO:0043566;structure-specific DNA binding;0.000107161950161958!GO:0006606;protein import into nucleus;0.000108133844503274!GO:0019867;outer membrane;0.00011694317079823!GO:0003724;RNA helicase activity;0.000135070633739633!GO:0043492;ATPase activity, coupled to movement of substances;0.000136187572016595!GO:0022403;cell cycle phase;0.000136774742908329!GO:0006613;cotranslational protein targeting to membrane;0.000142463420395723!GO:0008092;cytoskeletal protein binding;0.000145482972799329!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.000162621362409512!GO:0000087;M phase of mitotic cell cycle;0.000162621362409512!GO:0009165;nucleotide biosynthetic process;0.000168830492223807!GO:0016853;isomerase activity;0.000168830492223807!GO:0031497;chromatin assembly;0.000170000703451194!GO:0007067;mitosis;0.000170364840198565!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.000175256973521372!GO:0065009;regulation of a molecular function;0.000180217529344256!GO:0015630;microtubule cytoskeleton;0.000186905915393661!GO:0031324;negative regulation of cellular metabolic process;0.000190534249783183!GO:0016859;cis-trans isomerase activity;0.000213922145084655!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.000214698741267842!GO:0005741;mitochondrial outer membrane;0.000221647334498515!GO:0005048;signal sequence binding;0.000230484365624666!GO:0001568;blood vessel development;0.000240442097232552!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000259336339879394!GO:0007010;cytoskeleton organization and biogenesis;0.000267948017023371!GO:0016779;nucleotidyltransferase activity;0.000270948898397818!GO:0043623;cellular protein complex assembly;0.000280371030676386!GO:0008632;apoptotic program;0.000334284743152315!GO:0009892;negative regulation of metabolic process;0.000425044271920891!GO:0005885;Arp2/3 protein complex;0.000445880646636342!GO:0048518;positive regulation of biological process;0.000452054493996296!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.000468224580623215!GO:0006414;translational elongation;0.000477072955548183!GO:0001944;vasculature development;0.000482959081040583!GO:0007265;Ras protein signal transduction;0.000488078515035206!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.0004989413872145!GO:0044262;cellular carbohydrate metabolic process;0.000565227914767877!GO:0000314;organellar small ribosomal subunit;0.000567378802732779!GO:0005763;mitochondrial small ribosomal subunit;0.000567378802732779!GO:0051427;hormone receptor binding;0.000588252477848764!GO:0042802;identical protein binding;0.000611401630708412!GO:0051789;response to protein stimulus;0.00077563355773637!GO:0006986;response to unfolded protein;0.00077563355773637!GO:0008250;oligosaccharyl transferase complex;0.000779407093868651!GO:0048468;cell development;0.000795891258735154!GO:0050657;nucleic acid transport;0.000834193215860389!GO:0051236;establishment of RNA localization;0.000834193215860389!GO:0050658;RNA transport;0.000834193215860389!GO:0043021;ribonucleoprotein binding;0.000854802750763293!GO:0006403;RNA localization;0.000887331961950467!GO:0043681;protein import into mitochondrion;0.000893385062152733!GO:0008361;regulation of cell size;0.000937187487236155!GO:0015980;energy derivation by oxidation of organic compounds;0.00094362212964323!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000955799129228445!GO:0051329;interphase of mitotic cell cycle;0.000965741500032966!GO:0005096;GTPase activator activity;0.000965741500032966!GO:0048471;perinuclear region of cytoplasm;0.000971077154622001!GO:0006612;protein targeting to membrane;0.00098465086295103!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00102000247020846!GO:0008186;RNA-dependent ATPase activity;0.00105017087384007!GO:0003899;DNA-directed RNA polymerase activity;0.00110503267884148!GO:0016049;cell growth;0.00115188941184126!GO:0035257;nuclear hormone receptor binding;0.00115772858456198!GO:0007006;mitochondrial membrane organization and biogenesis;0.00116270788535741!GO:0051920;peroxiredoxin activity;0.0011848293853924!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00120230196954144!GO:0051087;chaperone binding;0.00120284942337084!GO:0007242;intracellular signaling cascade;0.00124365718238015!GO:0001558;regulation of cell growth;0.00129196211261195!GO:0030133;transport vesicle;0.00138897321867807!GO:0005813;centrosome;0.00139088009038916!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00144560677446697!GO:0008654;phospholipid biosynthetic process;0.00147291768856911!GO:0004576;oligosaccharyl transferase activity;0.00147291768856911!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00157119540834921!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00157119540834921!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00157119540834921!GO:0051325;interphase;0.00163179798509414!GO:0030176;integral to endoplasmic reticulum membrane;0.00172765909403718!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00172765909403718!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.00188210295730821!GO:0018196;peptidyl-asparagine modification;0.00188735917422063!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00188735917422063!GO:0006897;endocytosis;0.00193829565651017!GO:0010324;membrane invagination;0.00193829565651017!GO:0007162;negative regulation of cell adhesion;0.00200749052414828!GO:0030041;actin filament polymerization;0.00203344255942061!GO:0031072;heat shock protein binding;0.00203719524226368!GO:0005774;vacuolar membrane;0.00217380926684326!GO:0051270;regulation of cell motility;0.00217380926684326!GO:0030659;cytoplasmic vesicle membrane;0.00230134535649716!GO:0006626;protein targeting to mitochondrion;0.00243189519880752!GO:0015992;proton transport;0.00259782648222605!GO:0043284;biopolymer biosynthetic process;0.00265321879921073!GO:0006818;hydrogen transport;0.00266012903176765!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00270663359396357!GO:0004004;ATP-dependent RNA helicase activity;0.0027157952376982!GO:0040011;locomotion;0.00273068633131846!GO:0030027;lamellipodium;0.00275908562919697!GO:0051101;regulation of DNA binding;0.00286856110988668!GO:0006509;membrane protein ectodomain proteolysis;0.00295301349608644!GO:0033619;membrane protein proteolysis;0.00295301349608644!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00307273783769137!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00307273783769137!GO:0030658;transport vesicle membrane;0.00340802791185909!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.00379663302900078!GO:0005815;microtubule organizing center;0.00386844127104643!GO:0040012;regulation of locomotion;0.0039337178104325!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00399673656602699!GO:0017166;vinculin binding;0.00402614799729724!GO:0033673;negative regulation of kinase activity;0.00412978102533973!GO:0006469;negative regulation of protein kinase activity;0.00412978102533973!GO:0009967;positive regulation of signal transduction;0.00419518502174029!GO:0030132;clathrin coat of coated pit;0.00422332097013273!GO:0048487;beta-tubulin binding;0.00429433648192492!GO:0030833;regulation of actin filament polymerization;0.00431048765653598!GO:0005083;small GTPase regulator activity;0.0044658298393491!GO:0009966;regulation of signal transduction;0.00448968593375645!GO:0051348;negative regulation of transferase activity;0.00455559241060168!GO:0022408;negative regulation of cell-cell adhesion;0.00456824193272097!GO:0045941;positive regulation of transcription;0.00460787793989751!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.00485264397663273!GO:0008139;nuclear localization sequence binding;0.00503836631453267!GO:0044437;vacuolar part;0.00518106880538314!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00537015897047977!GO:0048514;blood vessel morphogenesis;0.0057406764626397!GO:0065007;biological regulation;0.00588827586764096!GO:0007040;lysosome organization and biogenesis;0.00590912330529512!GO:0008154;actin polymerization and/or depolymerization;0.00595664071313671!GO:0030660;Golgi-associated vesicle membrane;0.00595664071313671!GO:0030663;COPI coated vesicle membrane;0.00596030161472798!GO:0030126;COPI vesicle coat;0.00596030161472798!GO:0016481;negative regulation of transcription;0.00606506693454351!GO:0040008;regulation of growth;0.00618021135726068!GO:0001953;negative regulation of cell-matrix adhesion;0.00647635177401952!GO:0051098;regulation of binding;0.00647635177401952!GO:0022890;inorganic cation transmembrane transporter activity;0.00680229562446977!GO:0003729;mRNA binding;0.00680229562446977!GO:0030118;clathrin coat;0.00720375892461493!GO:0005765;lysosomal membrane;0.0072710605743897!GO:0051252;regulation of RNA metabolic process;0.00731250134941229!GO:0043488;regulation of mRNA stability;0.00731250134941229!GO:0043487;regulation of RNA stability;0.00731250134941229!GO:0030134;ER to Golgi transport vesicle;0.00775689620138743!GO:0031902;late endosome membrane;0.0078372502919856!GO:0030880;RNA polymerase complex;0.00798870746557358!GO:0005791;rough endoplasmic reticulum;0.00815772517347822!GO:0051028;mRNA transport;0.00815772517347822!GO:0030137;COPI-coated vesicle;0.00828883354837804!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00834815728394198!GO:0044433;cytoplasmic vesicle part;0.00839155168820324!GO:0007266;Rho protein signal transduction;0.00839155168820324!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00870177727870563!GO:0015002;heme-copper terminal oxidase activity;0.00870177727870563!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00870177727870563!GO:0004129;cytochrome-c oxidase activity;0.00870177727870563!GO:0045893;positive regulation of transcription, DNA-dependent;0.00875189038649406!GO:0005684;U2-dependent spliceosome;0.00893761148018626!GO:0000279;M phase;0.0091748009241158!GO:0030334;regulation of cell migration;0.00923585062937684!GO:0006950;response to stress;0.00940130118665168!GO:0016363;nuclear matrix;0.0095806487776004!GO:0030127;COPII vesicle coat;0.00967270233926924!GO:0012507;ER to Golgi transport vesicle membrane;0.00967270233926924!GO:0043065;positive regulation of apoptosis;0.00969406758669833!GO:0048660;regulation of smooth muscle cell proliferation;0.010041584198714!GO:0048500;signal recognition particle;0.0104768017808341!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0105822770191176!GO:0030695;GTPase regulator activity;0.0106023820276528!GO:0051168;nuclear export;0.0109949077663074!GO:0006595;polyamine metabolic process;0.0110569902439656!GO:0050790;regulation of catalytic activity;0.011190739402007!GO:0043068;positive regulation of programmed cell death;0.0112231042521707!GO:0043086;negative regulation of catalytic activity;0.011310626301408!GO:0006740;NADPH regeneration;0.0116017450686552!GO:0006098;pentose-phosphate shunt;0.0116017450686552!GO:0008637;apoptotic mitochondrial changes;0.0120394424540631!GO:0003779;actin binding;0.0120824009497355!GO:0006402;mRNA catabolic process;0.0120824009497355!GO:0001726;ruffle;0.0121531884409664!GO:0001525;angiogenesis;0.0121719693039703!GO:0031301;integral to organelle membrane;0.0127161151451018!GO:0030308;negative regulation of cell growth;0.0127894078392274!GO:0000786;nucleosome;0.0129846457595424!GO:0045792;negative regulation of cell size;0.0130702630251512!GO:0051128;regulation of cellular component organization and biogenesis;0.0133550996382378!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0135676528114558!GO:0045185;maintenance of protein localization;0.0136607666469994!GO:0005092;GDP-dissociation inhibitor activity;0.0136607666469994!GO:0007033;vacuole organization and biogenesis;0.0137599285814649!GO:0005862;muscle thin filament tropomyosin;0.0137612068337388!GO:0000209;protein polyubiquitination;0.0139135187993397!GO:0045045;secretory pathway;0.0139654793463961!GO:0015036;disulfide oxidoreductase activity;0.0139654793463961!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0142729362705972!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.0142839872627795!GO:0022407;regulation of cell-cell adhesion;0.0146429816887701!GO:0005637;nuclear inner membrane;0.0147786124928601!GO:0007050;cell cycle arrest;0.0147939670952423!GO:0016281;eukaryotic translation initiation factor 4F complex;0.0149650624598113!GO:0006352;transcription initiation;0.0154353689371364!GO:0046474;glycerophospholipid biosynthetic process;0.0154549929502934!GO:0046822;regulation of nucleocytoplasmic transport;0.0156233505549609!GO:0005099;Ras GTPase activator activity;0.0158284437591758!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.0161243995298407!GO:0000428;DNA-directed RNA polymerase complex;0.0161243995298407!GO:0006383;transcription from RNA polymerase III promoter;0.0163958959483109!GO:0042168;heme metabolic process;0.0164345348890661!GO:0006401;RNA catabolic process;0.0164510975423062!GO:0030521;androgen receptor signaling pathway;0.0167598681772371!GO:0044452;nucleolar part;0.0168733238428075!GO:0031272;regulation of pseudopodium formation;0.0175821318779283!GO:0031269;pseudopodium formation;0.0175821318779283!GO:0031344;regulation of cell projection organization and biogenesis;0.0175821318779283!GO:0031268;pseudopodium organization and biogenesis;0.0175821318779283!GO:0031346;positive regulation of cell projection organization and biogenesis;0.0175821318779283!GO:0031274;positive regulation of pseudopodium formation;0.0175821318779283!GO:0006891;intra-Golgi vesicle-mediated transport;0.0176323566097002!GO:0008033;tRNA processing;0.0177231291024412!GO:0005819;spindle;0.0177283404897364!GO:0006118;electron transport;0.0177654243708932!GO:0015631;tubulin binding;0.0178394235799298!GO:0000059;protein import into nucleus, docking;0.017983999374149!GO:0032507;maintenance of cellular protein localization;0.0180845963511752!GO:0043022;ribosome binding;0.0186056734044975!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.0189913199732047!GO:0006839;mitochondrial transport;0.0192449752562238!GO:0031418;L-ascorbic acid binding;0.0192692095787896!GO:0006289;nucleotide-excision repair;0.0193552513290309!GO:0016197;endosome transport;0.0195802314926482!GO:0006778;porphyrin metabolic process;0.0195802314926482!GO:0033013;tetrapyrrole metabolic process;0.0195802314926482!GO:0012506;vesicle membrane;0.0195802314926482!GO:0006650;glycerophospholipid metabolic process;0.0203047959308366!GO:0045926;negative regulation of growth;0.0212320555647744!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.021349853776573!GO:0007034;vacuolar transport;0.0213530081169724!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0218557075203711!GO:0005832;chaperonin-containing T-complex;0.0218854392328382!GO:0031901;early endosome membrane;0.0219438827821389!GO:0005869;dynactin complex;0.0219438827821389!GO:0051540;metal cluster binding;0.0222548695588646!GO:0051536;iron-sulfur cluster binding;0.0222548695588646!GO:0030155;regulation of cell adhesion;0.0226263354071082!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.0227303477947663!GO:0033043;regulation of organelle organization and biogenesis;0.0227303477947663!GO:0001952;regulation of cell-matrix adhesion;0.0227380529754169!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0229054158421813!GO:0045047;protein targeting to ER;0.0229054158421813!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0241565003025142!GO:0030119;AP-type membrane coat adaptor complex;0.0241923264497682!GO:0045879;negative regulation of smoothened signaling pathway;0.0250792155262431!GO:0006458;'de novo' protein folding;0.0254361426653353!GO:0051084;'de novo' posttranslational protein folding;0.0254361426653353!GO:0030032;lamellipodium biogenesis;0.0255944833699799!GO:0048659;smooth muscle cell proliferation;0.0258400941229938!GO:0008283;cell proliferation;0.0258400941229938!GO:0006368;RNA elongation from RNA polymerase II promoter;0.0258400941229938!GO:0030125;clathrin vesicle coat;0.0262523541210248!GO:0030665;clathrin coated vesicle membrane;0.0262523541210248!GO:0035258;steroid hormone receptor binding;0.026621572851622!GO:0030145;manganese ion binding;0.0267585629133636!GO:0043433;negative regulation of transcription factor activity;0.0268540240823833!GO:0000082;G1/S transition of mitotic cell cycle;0.0274837051930577!GO:0019904;protein domain specific binding;0.0275387585407312!GO:0003756;protein disulfide isomerase activity;0.027564310753922!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.027564310753922!GO:0030031;cell projection biogenesis;0.0275962223307144!GO:0051235;maintenance of localization;0.0276610510743768!GO:0046519;sphingoid metabolic process;0.027837249672813!GO:0016272;prefoldin complex;0.0278656126976407!GO:0000123;histone acetyltransferase complex;0.0282880033142205!GO:0008312;7S RNA binding;0.0283354846377987!GO:0008180;signalosome;0.0285502322938293!GO:0005853;eukaryotic translation elongation factor 1 complex;0.0286072425819338!GO:0008064;regulation of actin polymerization and/or depolymerization;0.0286744125958467!GO:0005100;Rho GTPase activator activity;0.0286744125958467!GO:0003746;translation elongation factor activity;0.029336265522917!GO:0046467;membrane lipid biosynthetic process;0.029528514723702!GO:0031663;lipopolysaccharide-mediated signaling pathway;0.0300444203608523!GO:0031529;ruffle organization and biogenesis;0.0302755228457467!GO:0046489;phosphoinositide biosynthetic process;0.0302755228457467!GO:0001666;response to hypoxia;0.0303198604447286!GO:0006917;induction of apoptosis;0.0307351768356792!GO:0000049;tRNA binding;0.0310660194184193!GO:0051651;maintenance of cellular localization;0.031690501296054!GO:0008538;proteasome activator activity;0.0318363415545546!GO:0035035;histone acetyltransferase binding;0.0326215196583329!GO:0009303;rRNA transcription;0.0330994843155338!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0332703354372253!GO:0048144;fibroblast proliferation;0.0335144006414836!GO:0048145;regulation of fibroblast proliferation;0.0335144006414836!GO:0030131;clathrin adaptor complex;0.0335144006414836!GO:0016301;kinase activity;0.0347325571751803!GO:0043189;H4/H2A histone acetyltransferase complex;0.0351603021666392!GO:0004674;protein serine/threonine kinase activity;0.0353647290285113!GO:0050178;phenylpyruvate tautomerase activity;0.0355227288548556!GO:0003684;damaged DNA binding;0.0358964244939707!GO:0030984;kininogen binding;0.0365648264074684!GO:0004213;cathepsin B activity;0.0365648264074684!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0365811718574847!GO:0010257;NADH dehydrogenase complex assembly;0.0365811718574847!GO:0033108;mitochondrial respiratory chain complex assembly;0.0365811718574847!GO:0001569;patterning of blood vessels;0.037497777614322!GO:0051539;4 iron, 4 sulfur cluster binding;0.0379973828164444!GO:0006979;response to oxidative stress;0.0381573735325809!GO:0012502;induction of programmed cell death;0.0384156415383054!GO:0030330;DNA damage response, signal transduction by p53 class mediator;0.038573892170494!GO:0003711;transcription elongation regulator activity;0.0388604371803368!GO:0006417;regulation of translation;0.0397174503345415!GO:0008475;procollagen-lysine 5-dioxygenase activity;0.0398170749525133!GO:0022415;viral reproductive process;0.0399007507887296!GO:0030866;cortical actin cytoskeleton organization and biogenesis;0.0402212311353805!GO:0004680;casein kinase activity;0.0404776282812989!GO:0030518;steroid hormone receptor signaling pathway;0.0409690528098626!GO:0003690;double-stranded DNA binding;0.0409690528098626!GO:0050811;GABA receptor binding;0.0411147726082705!GO:0006643;membrane lipid metabolic process;0.0414670905391059!GO:0031625;ubiquitin protein ligase binding;0.0418659148993764!GO:0006007;glucose catabolic process;0.0427607094265828!GO:0006378;mRNA polyadenylation;0.0435138871046225!GO:0006783;heme biosynthetic process;0.0441537992176844!GO:0030913;paranodal junction assembly;0.044204201345401!GO:0032288;myelin formation;0.044204201345401!GO:0043407;negative regulation of MAP kinase activity;0.045001680195961!GO:0003682;chromatin binding;0.0459255225751732!GO:0035267;NuA4 histone acetyltransferase complex;0.0464166364347942!GO:0006892;post-Golgi vesicle-mediated transport;0.0465970792588655!GO:0030911;TPR domain binding;0.0471524506252962!GO:0006497;protein amino acid lipidation;0.0475009445440417!GO:0030149;sphingolipid catabolic process;0.0476828110421087!GO:0003678;DNA helicase activity;0.0478963856943067!GO:0042771;DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis;0.0480938020411746!GO:0006611;protein export from nucleus;0.0482450132733388!GO:0004177;aminopeptidase activity;0.0489513312639017!GO:0018193;peptidyl-amino acid modification;0.0489513312639017!GO:0006672;ceramide metabolic process;0.0489707261107056 | |||
|sample_id=11343 | |||
|sample_note= | |||
|sample_sex=male | |||
|sample_species=Human (Homo sapiens) | |||
|sample_strain= | |||
|sample_tissue=internal thoracic artery | |||
|top_motifs=SPZ1:1.83185403667;RXR{A,B,G}:1.81564153297;IKZF1:1.64688144271;SOX{8,9,10}:1.58441371893;TFAP4:1.51535448602;FOXL1:1.42237627014;ARID5B:1.40518186448;TLX1..3_NFIC{dimer}:1.37144835975;UFEwm:1.19858388989;ZNF423:1.19253675071;HES1:1.18376479012;AR:1.14322733383;NFATC1..3:1.12936899532;RXRA_VDR{dimer}:1.11126465097;GLI1..3:1.08685095636;ZBTB6:1.02120595097;PPARG:0.96682935519;TFAP2{A,C}:0.948453836777;NKX2-2,8:0.944437218111;EBF1:0.942376509463;ESRRA:0.917951423668;ZNF148:0.873651021635;TP53:0.767982184686;NR3C1:0.755637363817;GTF2A1,2:0.753638068083;SMAD1..7,9:0.734649189112;ONECUT1,2:0.680706722336;GATA6:0.671453803653;LEF1_TCF7_TCF7L1,2:0.6522577315;XCPE1{core}:0.651241885481;HAND1,2:0.584552784558;PAX1,9:0.572454030468;PAX5:0.545457164543;NFE2L1:0.541533236052;ALX4:0.511016571637;ZIC1..3:0.503482417582;SOX17:0.484492961599;ETS1,2:0.482515729609;IKZF2:0.455185645578;GZF1:0.430081775376;HMX1:0.403177222554;EVI1:0.367895299796;SOX2:0.362622293589;REST:0.360327637749;SOX5:0.351970566511;EN1,2:0.347838845609;bHLH_family:0.341739324472;TFCP2:0.338408685865;HOX{A5,B5}:0.294830491472;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.287127090999;SPIB:0.274726722029;GCM1,2:0.260334635088;HIC1:0.256851007609;HMGA1,2:0.255861166318;HBP1_HMGB_SSRP1_UBTF:0.210333064353;XBP1:0.176479288581;POU6F1:0.173425560153;SRF:0.166226830175;NANOG:0.159858261461;LHX3,4:0.139072372706;TEAD1:0.136920489963;TBP:0.12438502352;BACH2:0.10938513139;SP1:0.0922371281724;PITX1..3:0.0845702424581;ELF1,2,4:0.0818982281709;FOX{I1,J2}:0.0781678504274;MTE{core}:0.0723329725538;RORA:0.0619478217454;LMO2:0.0530848674783;FOS_FOS{B,L1}_JUN{B,D}:0.0494776304226;YY1:0.0441244734558;ZFP161:0.0337960567346;ZNF238:0.0327862218404;NFE2:0.0158029473725;TBX4,5:-0.00211286350427;NANOG{mouse}:-0.00927898692;STAT2,4,6:-0.0308536020657;TFAP2B:-0.0346147408456;GTF2I:-0.0377170873742;PAX8:-0.0393564452885;NR5A1,2:-0.0517685845306;KLF4:-0.052620907981;GFI1B:-0.0527560975711;NFE2L2:-0.0659147445781;PATZ1:-0.0795398197457;SPI1:-0.0850638264698;HNF4A_NR2F1,2:-0.0880797842359;NKX3-2:-0.0941082511374;MYOD1:-0.110697563062;FOXQ1:-0.111240597478;MED-1{core}:-0.114483809624;EGR1..3:-0.127128391578;NFKB1_REL_RELA:-0.140878211904;POU3F1..4:-0.147176671288;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.151506209389;FOSL2:-0.151993948706;MYB:-0.155841725314;NHLH1,2:-0.170651017525;FOXM1:-0.194183866132;MAZ:-0.212662780072;POU2F1..3:-0.218547700348;RREB1:-0.237213000223;HNF1A:-0.24746011026;NKX2-1,4:-0.255875679189;PAX6:-0.272397612517;ATF2:-0.278711174299;TEF:-0.302752890301;ATF6:-0.303630945144;ZNF143:-0.306840083104;RBPJ:-0.308539821436;SNAI1..3:-0.345686162398;PAX4:-0.347853310273;ESR1:-0.367059162685;ADNP_IRX_SIX_ZHX:-0.37616235751;RFX1:-0.379688543145;FOXD3:-0.388141035;MTF1:-0.404564101421;TAL1_TCF{3,4,12}:-0.415134069812;PRDM1:-0.420335031584;BPTF:-0.436454581808;FOXA2:-0.440044694731;PAX3,7:-0.448182987615;PRRX1,2:-0.448775246107;NR6A1:-0.474012129753;MEF2{A,B,C,D}:-0.50848241468;RUNX1..3:-0.513425895778;DMAP1_NCOR{1,2}_SMARC:-0.515863365081;TLX2:-0.518434081051;DBP:-0.5206771189;JUN:-0.530543818388;HLF:-0.534485301029;E2F1..5:-0.53933488676;CDC5L:-0.556984401536;GATA4:-0.566372182566;VSX1,2:-0.576717159116;TFDP1:-0.583900232795;MZF1:-0.585229036711;IRF1,2:-0.589735431412;FOX{D1,D2}:-0.591293785575;CRX:-0.60371073197;ZEB1:-0.639233146211;IRF7:-0.641696840571;PBX1:-0.664597044101;CUX2:-0.667958220304;ZBTB16:-0.675946368937;FOXO1,3,4:-0.67710827377;ALX1:-0.681633950931;OCT4_SOX2{dimer}:-0.709117931944;MYFfamily:-0.709202810652;NKX2-3_NKX2-5:-0.723682475153;HOX{A6,A7,B6,B7}:-0.725095641876;FOXP1:-0.732548964479;HSF1,2:-0.745265272865;NRF1:-0.760062696221;FOXP3:-0.763264517579;STAT1,3:-0.778205459817;PAX2:-0.778464208801;MAFB:-0.792064327333;FOX{F1,F2,J1}:-0.812443910151;CDX1,2,4:-0.822302204392;CEBPA,B_DDIT3:-0.857658488058;TOPORS:-0.867469895785;EP300:-0.870949391896;NFY{A,B,C}:-0.876213668887;CREB1:-0.906905002467;GFI1:-0.922135069303;SREBF1,2:-0.930311406905;ELK1,4_GABP{A,B1}:-0.939318473997;STAT5{A,B}:-0.943733007525;MYBL2:-0.949262653913;PDX1:-0.997478361988;HOXA9_MEIS1:-1.02114097386;AIRE:-1.05480661865;NFIL3:-1.07932667128;HOX{A4,D4}:-1.08973300293;HIF1A:-1.09893347925;NR1H4:-1.12961111772;TGIF1:-1.17888276971;BREu{core}:-1.23305128685;ATF5_CREB3:-1.28955804711;RFX2..5_RFXANK_RFXAP:-1.29596239425;ZNF384:-1.32754560651;POU1F1:-1.35860038765;T:-1.39694010938;ATF4:-1.40038146474;NKX3-1:-1.43426894776;NFIX:-1.49175784789;AHR_ARNT_ARNT2:-1.49337781449;POU5F1:-1.52303958437;NKX6-1,2:-1.5487391031;FOXN1:-1.78192902958 | |||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11343-117G2;search_select_hide=table117:FF:11343-117G2 | |||
}} | }} |
Latest revision as of 17:53, 4 June 2020
Name: | Endothelial Cells - Thoracic, donor2 |
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Species: | Human (Homo sapiens) |
Library ID: | CNhs11978 |
Sample type: | primary cells |
Genomic View: | UCSC |
RefEX: | Specific genes |
FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18 |
CAGEd-oPOSSUM: | link |
ZENBU report : | link |
Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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Download raw sequence, BAM & CTSS | ||||||||||||||
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RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11978
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11978
Novel motif | Logo | P-value |
---|---|---|
1 | 1 | 0.356 |
10 | 10 | 0.95 |
100 | 100 | 0.817 |
101 | 101 | 0.342 |
102 | 102 | 0.502 |
103 | 103 | 0.132 |
104 | 104 | 0.945 |
105 | 105 | 0.305 |
106 | 106 | 0.00961 |
107 | 107 | 0.0298 |
108 | 108 | 0.143 |
109 | 109 | 0.167 |
11 | 11 | 0.0522 |
110 | 110 | 0.0556 |
111 | 111 | 0.0654 |
112 | 112 | 0.161 |
113 | 113 | 0.888 |
114 | 114 | 0.117 |
115 | 115 | 0.232 |
116 | 116 | 0.14 |
117 | 117 | 0.567 |
118 | 118 | 0.214 |
119 | 119 | 0.273 |
12 | 12 | 0.849 |
120 | 120 | 0.00324 |
121 | 121 | 0.882 |
122 | 122 | 0.264 |
123 | 123 | 0.602 |
124 | 124 | 0.542 |
125 | 125 | 0.291 |
126 | 126 | 0.875 |
127 | 127 | 0.263 |
128 | 128 | 0.233 |
129 | 129 | 0.0789 |
13 | 13 | 0.421 |
130 | 130 | 0.617 |
131 | 131 | 0.914 |
132 | 132 | 0.379 |
133 | 133 | 0.59 |
134 | 134 | 0.511 |
135 | 135 | 0.135 |
136 | 136 | 0.749 |
137 | 137 | 0.192 |
138 | 138 | 0.671 |
139 | 139 | 0.0713 |
14 | 14 | 0.827 |
140 | 140 | 0.967 |
141 | 141 | 0.39 |
142 | 142 | 0.837 |
143 | 143 | 0.012 |
144 | 144 | 0.822 |
145 | 145 | 0.0814 |
146 | 146 | 0.289 |
147 | 147 | 0.0656 |
148 | 148 | 0.593 |
149 | 149 | 0.0211 |
15 | 15 | 0.5 |
150 | 150 | 0.254 |
151 | 151 | 0.303 |
152 | 152 | 0.0325 |
153 | 153 | 0.0517 |
154 | 154 | 0.676 |
155 | 155 | 0.8 |
156 | 156 | 0.158 |
157 | 157 | 0.956 |
158 | 158 | 0.324 |
159 | 159 | 0.965 |
16 | 16 | 0.312 |
160 | 160 | 0.00518 |
161 | 161 | 0.634 |
162 | 162 | 0.723 |
163 | 163 | 0.714 |
164 | 164 | 0.159 |
165 | 165 | 0.873 |
166 | 166 | 0.563 |
167 | 167 | 0.648 |
168 | 168 | 0.429 |
169 | 169 | 0.0245 |
17 | 17 | 0.103 |
18 | 18 | 0.166 |
19 | 19 | 0.0606 |
2 | 2 | 0.255 |
20 | 20 | 0.977 |
21 | 21 | 0.751 |
22 | 22 | 0.243 |
23 | 23 | 0.109 |
24 | 24 | 0.738 |
25 | 25 | 0.858 |
26 | 26 | 0.376 |
27 | 27 | 0.201 |
28 | 28 | 0.266 |
29 | 29 | 0.476 |
3 | 3 | 0.517 |
30 | 30 | 0.896 |
31 | 31 | 0.681 |
32 | 32 | 0.0404 |
33 | 33 | 0.556 |
34 | 34 | 0.254 |
35 | 35 | 0.624 |
36 | 36 | 0.309 |
37 | 37 | 0.0887 |
38 | 38 | 0.311 |
39 | 39 | 0.213 |
4 | 4 | 0.734 |
40 | 40 | 0.0702 |
41 | 41 | 0.0895 |
42 | 42 | 0.884 |
43 | 43 | 0.314 |
44 | 44 | 0.145 |
45 | 45 | 0.3 |
46 | 46 | 0.0725 |
47 | 47 | 0.188 |
48 | 48 | 0.0856 |
49 | 49 | 0.433 |
5 | 5 | 0.791 |
50 | 50 | 0.65 |
51 | 51 | 0.311 |
52 | 52 | 0.597 |
53 | 53 | 0.687 |
54 | 54 | 0.49 |
55 | 55 | 0.759 |
56 | 56 | 0.622 |
57 | 57 | 0.233 |
58 | 58 | 0.914 |
59 | 59 | 0.0079 |
6 | 6 | 0.878 |
60 | 60 | 0.26 |
61 | 61 | 0.8 |
62 | 62 | 0.436 |
63 | 63 | 0.226 |
64 | 64 | 0.362 |
65 | 65 | 0.0755 |
66 | 66 | 0.983 |
67 | 67 | 0.349 |
68 | 68 | 0.218 |
69 | 69 | 0.133 |
7 | 7 | 0.693 |
70 | 70 | 0.106 |
71 | 71 | 0.368 |
72 | 72 | 0.697 |
73 | 73 | 0.0163 |
74 | 74 | 0.97 |
75 | 75 | 0.335 |
76 | 76 | 0.896 |
77 | 77 | 0.0189 |
78 | 78 | 0.544 |
79 | 79 | 1.87768e-4 |
8 | 8 | 0.029 |
80 | 80 | 0.595 |
81 | 81 | 0.73 |
82 | 82 | 0.185 |
83 | 83 | 0.469 |
84 | 84 | 0.135 |
85 | 85 | 0.085 |
86 | 86 | 0.851 |
87 | 87 | 0.242 |
88 | 88 | 0.891 |
89 | 89 | 0.0168 |
9 | 9 | 0.262 |
90 | 90 | 0.963 |
91 | 91 | 0.245 |
92 | 92 | 0.198 |
93 | 93 | 0.593 |
94 | 94 | 0.844 |
95 | 95 | 0.145 |
96 | 96 | 0.584 |
97 | 97 | 0.477 |
98 | 98 | 0.625 |
99 | 99 | 0.0171 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11978
FANTOM5 (FF) ontology
Direct parent terms
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000076 (squamous epithelial cell)
0002139 (endothelial cell of vascular tree)
0000213 (lining cell)
0002078 (meso-epithelial cell)
0000215 (barrier cell)
0000255 (eukaryotic cell)
0000115 (endothelial cell)
0000071 (blood vessel endothelial cell)
1000413 (endothelial cell of artery)
0002544 (aortic endothelial cell)
0002545 (thoracic aorta endothelial cell)
UBERON: Anatomy
0000468 (multi-cellular organism)
0000947 (aorta)
0001637 (artery)
0002100 (trunk)
0000483 (epithelium)
0000479 (tissue)
0000055 (vessel)
0000064 (organ part)
0000062 (organ)
0004111 (anatomical conduit)
0000475 (organism subdivision)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000063 (organ segment)
0003914 (epithelial tube)
0000025 (tube)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0000490 (unilaminar epithelium)
0006914 (squamous epithelium)
0009569 (subdivision of trunk)
0004573 (systemic artery)
0000487 (simple squamous epithelium)
0005800 (segment of aorta)
0003509 (arterial blood vessel)
0004638 (blood vessel endothelium)
0003915 (endothelial tube)
0004700 (arterial system endothelium)
0007500 (epithelial tube open at both ends)
0001981 (blood vessel)
0002049 (vasculature)
0001986 (endothelium)
0010317 (germ layer / neural crest derived structure)
0007798 (vascular system)
0004852 (cardiovascular system endothelium)
0001515 (thoracic aorta)
0001917 (endothelium of artery)
0004535 (cardiovascular system)
0004571 (systemic arterial system)
0010191 (aortic system)
0000915 (thoracic segment of trunk)
0004572 (arterial system)
0004537 (blood vasculature)
0001009 (circulatory system)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000046 (human endothelial cell sample)
0000047 (human endothelial cell of the artery sample)
0000048 (human endothelial cell of the aorta sample)
0000001 (sample)
0000051 (human thoracic endothelial cell sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0002546 (embryonic blood vessel endothelial progenitor cell)
CL:0000222 (mesodermal cell)