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(Created page with "{{f5samples |id=FF:11222-116B7 |name=Fibroblast - Gingival, donor4 (GFH2) |sample_id=11222 |rna_tube_id=116B7 |rna_box=116 |rna_position=B7 |sample_cell_lot=N/A |sampl...")
 
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{{f5samples
{{f5samples
|id=FF:11222-116B7
|DRA_sample_Accession=CAGE@SAMD00004784
|name=Fibroblast - Gingival, donor4 (GFH2)
|HumanCAGEScanFiles=NCig10039;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.primary_cell.CAGEScan/Fibroblast%2520-%2520Gingival%252c%2520donor4%2520%28GFH2%29.NCig10039.11222-116B7.hg19.GCTATA.3prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.primary_cell.CAGEScan/Fibroblast%2520-%2520Gingival%252c%2520donor4%2520%28GFH2%29.NCig10039.11222-116B7.hg19.GCTATA.5prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.primary_cell.CAGEScan/Fibroblast%2520-%2520Gingival%252c%2520donor4%2520%28GFH2%29.NCig10039.11222-116B7.hg19.GCTATA.bam;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.primary_cell.CAGEScan/Fibroblast%2520-%2520Gingival%252c%2520donor4%2520%28GFH2%29.NCig10039.11222-116B7.hg19.GCTATA.pairs.bed.gz
|sample_id=11222
|accession_numbers=CAGE;DRX008263;DRR009135;DRZ000560;DRZ001945;DRZ011910;DRZ013295
|rna_tube_id=116B7
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002384,UBERON:0000033,UBERON:0000479,UBERON:0001007,UBERON:0000344,UBERON:0004121,UBERON:0000064,UBERON:0004119,UBERON:0000062,UBERON:0004111,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0004923,UBERON:0000161,UBERON:0001444,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003729,UBERON:0010317,UBERON:0001555,UBERON:0001828,UBERON:0001004,UBERON:0000153,UBERON:0007811,UBERON:0000165,UBERON:0000166
|rna_box=116
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000255,CL:0000057,CL:0002552
|rna_position=B7
|sample_cell_lot=N/A
|sample_cell_catalog=N/A
|sample_company=N/A
|rna_lot_number=
|rna_catalog_number=N/A
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_dev_stage=22 years old adult
|sample_tissue=gum
|sample_donor(cell lot)=
|sample_sex=male
|sample_age=22
|sample_ethnicity=A
|rna_rin=9.60000
|rna_od260/230=1.98667
|rna_od260/280=2.04333
|sample_cell_type=fibroblast
|sample_cell_line=
|sample_collaboration=Mitsuhiro Ohshima (Nihon University School of Dentistry)
|sample_experimental_condition=
|sample_disease=
|rna_sample_type=total RNA
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
|rna_weight_ug=21.84820
|rna_concentration=0.99310
|sample_note=machine failed, remainder reloaded, low amount
|profile_hcage=CNhs10848,LSID700,release008,COMPLETED
|profile_cagescan=NCig10039,,,
|profile_srnaseq=,,,
|profile_rnaseq=,,,
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000004,CL:0000012,CL:0000034,CL:0000048,CL:0000055,CL:0000057,CL:0000063,CL:0000134,CL:0000144,CL:0000219,CL:0000255,CL:0000548,CL:0000723,CL:0002320,CL:0002371,CL:0002552
|ancestors_in_anatomy_facet=UBERON:0000033,UBERON:0000061,UBERON:0000062,UBERON:0000064,UBERON:0000153,UBERON:0000161,UBERON:0000165,UBERON:0000166,UBERON:0000464,UBERON:0000465,UBERON:0000466,UBERON:0000467,UBERON:0000468,UBERON:0000475,UBERON:0000477,UBERON:0000479,UBERON:0000480,UBERON:0000481,UBERON:0000922,UBERON:0000923,UBERON:0000925,UBERON:0000930,UBERON:0001004,UBERON:0001007,UBERON:0001062,UBERON:0001444,UBERON:0001555,UBERON:0001828,UBERON:0002050,UBERON:0002384,UBERON:0002532,UBERON:0004111,UBERON:0004119,UBERON:0005423,UBERON:0007026
|ancestors_in_disease_facet=
|ancestors_in_disease_facet=
|sample_description=
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000057,FF:0000001,FF:0000063
 
|comment=
|created_by=
|creation_date=
|data_phase=2
|datafreeze_phase=2
|def=
|expression_enrichment_score=chr1:170632285..170632309,+!p1@PRRX1!2.30!224.53!PRRX1;;chr10:28034739..28034756,-!p1@MKX!2.13!134.24!MKX;;chr16:86544113..86544145,+!p1@FOXF1!2.10!154.44!FOXF1;;chr1:170633348..170633399,+!p2@PRRX1!1.87!97.42!PRRX1;;chr15:57511609..57511651,+!p2@TCF12!1.84!112.86!TCF12;;chr6:1389789..1389821,+!p1@FOXF2!1.84!91.48!FOXF2;;chr20:55204351..55204377,+!p1@TFAP2C!1.81!79.60!TFAP2C;;chr6:134210243..134210257,+!p1@TCF21!1.81!64.15!TCF21;;chr9:132427972..132428056,+!p1@PRRX2!1.76!73.66!PRRX2;;chr9:132427883..132427951,+!p2@PRRX2!1.75!54.65!PRRX2;;chr6:45296048..45296082,+!p1@RUNX2!1.68!53.46!RUNX2;;chr2:239756671..239756732,+!p1@TWIST2!1.65!135.43!TWIST2;;chr4:4861385..4861398,+!p1@MSX1!1.64!121.18!MSX1;;chr11:46299199..46299233,+!p1@CREB3L1!1.63!204.34!CREB3L1;;chr17:59477233..59477263,+!p1@TBX2!1.52!97.42!TBX2;;chr14:37131058..37131139,+!p1@PAX9!1.50!30.89!PAX9;;chr12:115122318..115122331,-!p2@TBX3!1.47!28.51!TBX3;;chr1:170633262..170633285,+!p3@PRRX1!1.43!29.70!PRRX1;;chr3:141105705..141105770,+!p4@ZBTB38!1.42!30.89!ZBTB38;;chr9:96717629..96717644,-!p1@BARX1!1.41!24.95!BARX1;;chr14:61116183..61116208,-!p1@SIX1!1.40!89.10!SIX1;;chr2:239756739..239756755,+!p2@TWIST2!1.40!40.39!TWIST2;;chr7:44143925..44143970,+!p1@AEBP1!1.38!491.83!AEBP1;;chr7:19157248..19157268,-!p1@TWIST1!1.36!59.40!TWIST1;;chr1:170632477..170632506,+!p6@PRRX1!1.35!21.38!PRRX1;;chr8:72756667..72756736,-!p2@MSC!1.34!32.08!MSC;;chr7:44143978..44143989,+!p2@AEBP1!1.33!36.83!AEBP1;;chr1:170632250..170632277,+!p7@PRRX1!1.33!20.20!PRRX1;;chr14:24837368..24837401,+!p1@NFATC4!1.32!46.33!NFATC4;;chr1:75600067..75600094,+!p2@LHX8!1.30!19.01!LHX8;;chr6:1389824..1389840,+!p3@FOXF2!1.25!16.63!FOXF2;;chr11:46299539..46299620,+!p2@CREB3L1!1.22!26.14!CREB3L1;;chr11:65687222..65687240,+!p7@DRAP1!1.22!20.20!DRAP1;;chr11:34642612..34642646,+!p1@EHF!1.22!15.44!EHF;;chr2:19558373..19558392,-!p1@OSR1!1.20!40.39!OSR1;;chr2:200322654..200322707,-!p2@SATB2!1.20!21.38!SATB2;;chr8:72756063..72756125,-!p1@MSC!1.18!28.51!MSC;;chr2:191878812..191878823,-!p2@STAT1!1.18!17.82!STAT1;;chr10:28035133..28035148,-!p3@MKX!1.18!14.26!MKX;;chr5:72744594..72744609,-!p1@FOXD1!1.16!61.78!FOXD1;;chr10:31607702..31607755,+!p3@ZEB1!1.16!15.44!ZEB1;;chr14:37126765..37126799,+!p2@PAX9!1.15!13.07!PAX9;;chr6:1389989..1390019,+!p2@FOXF2!1.15!13.07!FOXF2;;chr17:59477197..59477212,+!p2@TBX2!1.13!21.38!TBX2;;chr1:170632439..170632465,+!p11@PRRX1!1.11!11.88!PRRX1;;chr1:170633058..170633084,+!p5@PRRX1!1.11!11.88!PRRX1;;chrY:2803415..2803468,+!p1@ZFY!1.11!11.88!ZFY;;chr18:22932080..22932170,-!p1@ZNF521!1.10!49.90!ZNF521;;chr2:200323414..200323455,-!p1@SATB2!1.10!24.95!SATB2;;chr3:141121847..141121868,+!p5@ZBTB38!1.10!17.82!ZBTB38;;chr17:59477275..59477286,+!p3@TBX2!1.10!15.44!TBX2;;chr8:72756637..72756664,-!p3@MSC!1.10!13.07!MSC;;chr15:42749722..42749739,-!p2@ZFP106!1.09!20.20!ZFP106;;chr11:65687362..65687436,+!p3@DRAP1!1.08!51.08!DRAP1;;chr1:170632959..170632987,+!p4@PRRX1!1.07!11.88!PRRX1;;chr1:170632762..170632786,+!p13@PRRX1!1.07!10.69!PRRX1;;chr10:28035112..28035130,-!p5@MKX!1.07!10.69!MKX;;chr2:46524537..46524553,+!p1@EPAS1!1.05!1021.68!EPAS1;;chr11:65687158..65687216,+!p4@DRAP1!1.03!55.84!DRAP1;;chr7:19157043..19157088,-!p2@TWIST1!1.03!24.95!TWIST1;;chr11:65686802..65686818,+!p6@DRAP1!1.02!16.63!DRAP1;;chr6:36355513..36355578,-!p2@ETV7!1.02!11.88!ETV7;;chr12:115121770..115121781,-!p4@TBX3!1.02!9.50!TBX3;;chr2:95963052..95963106,+!p1@KCNIP3!1.02!9.50!KCNIP3;;chr1:170632115..170632136,+!p9@PRRX1!1.02!9.50!PRRX1;;chr1:170632325..170632339,+!p24@PRRX1!1.02!9.50!PRRX1;;chr8:99956662..99956684,+!p1@OSR2!1.01!14.26!OSR2;;chr2:191878874..191878938,-!p1@STAT1!1.00!494.21!STAT1;;chr6:1312325..1312340,+!p1@FOXQ1!0.98!14.26!FOXQ1;;chr1:170632137..170632172,+!p10@PRRX1!0.97!8.32!PRRX1;;chr20:55205825..55205847,+!p2@TFAP2C!0.97!8.32!TFAP2C;;chr10:28035155..28035166,-!p8@MKX!0.97!8.32!MKX;;chr12:115121802..115121814,-!p5@TBX3!0.97!8.32!TBX3;;chr3:141121820..141121838,+!p9@ZBTB38!0.97!8.32!ZBTB38;;chr12:53614115..53614154,-!p1@RARG!0.96!45.14!RARG;;chr8:72756267..72756296,-!p4@MSC!0.95!11.88!MSC;;chr5:72744445..72744466,-!p2@FOXD1!0.94!13.07!FOXD1;;chr1:25256756..25256774,-!p1@RUNX3!0.92!14.26!RUNX3;;chr7:44143738..44143760,+!p4@AEBP1!0.92!8.32!AEBP1;;chr7:96654133..96654150,-!p1@DLX5!0.91!7.13!DLX5;;chr1:170632310..170632321,+!p15@PRRX1!0.91!7.13!PRRX1;;chr1:25291475..25291511,-!p2@RUNX3!0.91!7.13!RUNX3;;chr9:96717678..96717689,-!p2@BARX1!0.91!7.13!BARX1;;chr2:172949484..172949522,+!p1@DLX1!0.91!7.13!DLX1;;chr12:56753869..56753930,-!p1@STAT2!0.90!324.32!STAT2;;chr11:64764435..64764449,-!p1@BATF2!0.89!9.50!BATF2;;chr12:115121962..115121987,-!p1@TBX3!0.88!58.21!TBX3;;chr11:65667884..65667895,-!p2@FOSL1!0.87!26.14!FOSL1;;chr8:60031682..60031710,-!p2@TOX!0.87!10.69!TOX;;chr7:44143997..44144008,+!p3@AEBP1!0.87!8.32!AEBP1;;chr13:45151259..45151326,-!p2@TSC22D1!0.86!39.20!TSC22D1;;chr8:72756213..72756243,-!p5@MSC!0.86!8.32!MSC;;chr2:46612334..46612349,+!p6@EPAS1!0.86!8.32!EPAS1;;chr9:77112244..77112262,+!p1@RORB!0.86!7.13!RORB;;chrY:21906594..21906622,-!p1@KDM5D!0.84!5.94!KDM5D;;chr8:72756380..72756427,-!p8@MSC!0.84!5.94!MSC;;chr12:115122303..115122314,-!p6@TBX3!0.84!5.94!TBX3;;chr12:85673977..85674015,+!p1@ALX1!0.84!5.94!ALX1;;chr1:170633294..170633303,+!p23@PRRX1!0.84!5.94!PRRX1;;chr22:41763452..41763466,+!p2@TEF!0.84!5.94!TEF;;chr2:102091566..102091581,-!p1@RFX8!0.84!5.94!RFX8;;chr15:57511589..57511608,+!p4@TCF12!0.84!5.94!TCF12;;chr3:157823517..157823562,-!p1@SHOX2!0.81!5.94!SHOX2;;chr11:12696071..12696086,+!p3@TEAD1!0.80!7.13!TEAD1;;chr17:17726907..17726958,-!p2@SREBF1!0.79!34.45!SREBF1;;chr11:65686732..65686756,+!p2@DRAP1!0.79!23.76!DRAP1;;chr6:126240380..126240430,+!p2@NCOA7!0.79!14.26!NCOA7;;chr11:615570..615721,-!p2@IRF7!0.79!10.69!IRF7;;chr19:31840130..31840160,-!p2@TSHZ3!0.79!8.32!TSHZ3;;chr2:46602901..46602926,+!p7@EPAS1!0.79!7.13!EPAS1;;chr9:102584159..102584174,+!p2@NR4A3!0.78!9.50!NR4A3;;chr2:145277640..145277771,-!p1@ZEB2!0.77!72.47!ZEB2;;chr7:14029283..14029311,-!p1@ETV1!0.77!28.51!ETV1;;chr5:321810..321877,+!p1@AHRR!0.77!16.63!AHRR;;chr12:115122005..115122016,-!p3@TBX3!0.77!5.94!TBX3;;chr12:66218598..66218645,+!p2@HMGA2!0.76!23.76!HMGA2;;chr5:174151553..174151610,+!p1@MSX2!0.76!8.32!MSX2;;chr5:134369879..134369898,-!p2@PITX1!0.76!4.75!PITX1;;chr6:28321971..28321995,-!p1@ZNF323!0.76!4.75!ZNF323;;chr8:60031934..60031986,-!p6@TOX!0.76!4.75!TOX;;chr2:172950227..172950249,+!p2@DLX1!0.76!4.75!DLX1;;chr2:172967323..172967336,-!p4@DLX2!0.76!4.75!DLX2;;chr2:200322259..200322280,-!p5@SATB2!0.76!4.75!SATB2;;chr2:46612891..46612907,+!p10@EPAS1!0.76!4.75!EPAS1;;chr2:95963120..95963136,+!p2@KCNIP3!0.76!4.75!KCNIP3;;chr2:96012353..96012378,+!p4@KCNIP3!0.76!4.75!KCNIP3;;chr3:141121871..141121885,+!p13@ZBTB38!0.76!4.75!ZBTB38;;chr10:131762589..131762601,-!p3@EBF3!0.76!4.75!EBF3;;chr11:46299443..46299459,+!p4@CREB3L1!0.76!4.75!CREB3L1;;chr11:46333934..46333963,+!p5@CREB3L1!0.76!4.75!CREB3L1;;chr12:52448338..52448401,+!p7@NR4A1!0.76!4.75!NR4A1;;chr1:170632051..170632081,+!p16@PRRX1!0.76!4.75!PRRX1;;chr1:170632583..170632590,+!p26@PRRX1!0.76!4.75!PRRX1;;chr1:170632647..170632659,+!p17@PRRX1!0.76!4.75!PRRX1;;chr1:75602043..75602093,+!p1@LHX8!0.76!4.75!LHX8;;chr16:79633894..79633954,-!p3@MAF!0.75!9.50!MAF;;chr7:42276787..42276815,-!p1@GLI3!0.74!13.07!GLI3;;chr20:45142154..45142227,-!p1@ZNF334!0.74!9.50!ZNF334;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!0.73!4.75!GLIS1;;chr11:65687243..65687276,+!p8@DRAP1!0.72!5.94!DRAP1;;chr1:47903709..47903764,+!p1@BC169308!0.71!4.75!FOXD2;;chr13:45151403..45151433,-!p5@TSC22D1!0.70!9.50!TSC22D1;;chr17:15689487..15689505,+!p@chr17:15689487..15689505,+!0.70!7.13!MEIS3P1;;chr20:48807615..48807644,+!p6@CEBPB!0.70!7.13!CEBPB;;chr2:46524865..46524870,+!p9@EPAS1!0.70!4.75!EPAS1;;chr2:145277882..145277967,-!p3@ZEB2!0.69!7.13!ZEB2;;chr11:615942..615957,-!p1@IRF7!0.68!41.58!IRF7;;chr3:71179699..71179744,-!p2@FOXP1!0.68!32.08!FOXP1;;chr2:157189180..157189290,-!p1@NR4A2!0.68!22.57!NR4A2;;chr1:158969752..158969780,+!p6@IFI16!0.68!7.13!IFI16;;chr14:24630902..24630948,+!p2@IRF9!0.68!4.75!IRF9;;chr5:92920256..92920282,+!p7@NR2F1!0.68!4.75!NR2F1;;chr5:134369905..134369972,-!p1@PITX1!0.67!5.94!PITX1;;chr7:14029312..14029325,-!p4@ETV1!0.67!4.75!ETV1;;chr10:104155659..104155676,+!p4@NFKB2!0.67!4.75!NFKB2;;chr14:21566731..21566836,-!p1@ZNF219!0.66!43.96!ZNF219;;chr22:38598086..38598105,+!p1@MAFF!0.66!43.96!MAFF;;chr11:65686952..65686975,+!p5@DRAP1!0.66!22.57!DRAP1;;chr5:92918894..92918912,+!p2@NR2F1!0.66!13.07!NR2F1;;chr18:56532100..56532130,+!p1@ZNF532!0.66!7.13!ZNF532;;chr15:67418177..67418204,+!p9@SMAD3!0.66!3.56!SMAD3;;chr10:31607811..31607837,+!p6@ZEB1!0.66!3.56!ZEB1;;chr12:115121587..115121597,-!p10@TBX3!0.66!3.56!TBX3;;chr12:115122262..115122271,-!p7@TBX3!0.66!3.56!TBX3;;chr12:53625846..53625861,-!p6@RARG!0.66!3.56!RARG;;chr1:158969727..158969749,+!p11@IFI16!0.66!3.56!IFI16;;chr1:170632028..170632043,+!p20@PRRX1!0.66!3.56!PRRX1;;chr1:170632723..170632739,+!p8@PRRX1!0.66!3.56!PRRX1;;chr1:170632907..170632916,+!p22@PRRX1!0.66!3.56!PRRX1;;chr1:170633194..170633205,+!p18@PRRX1!0.66!3.56!PRRX1;;chr20:55205791..55205817,+!p3@TFAP2C!0.66!3.56!TFAP2C;;chr5:174151612..174151633,+!p2@MSX2!0.66!3.56!MSX2;;chr7:150102756..150102772,+!p5@ZNF775!0.66!3.56!ZNF775;;chr8:116673894..116673913,-!p12@TRPS1!0.66!3.56!TRPS1;;chr8:93074848..93074871,-!p3@RUNX1T1!0.66!3.56!RUNX1T1;;chr22:41721853..41721874,+!p6@ZC3H7B!0.66!3.56!ZC3H7B;;chr2:172967353..172967365,-!p5@DLX2!0.66!3.56!DLX2;;chr3:157824001..157824078,-!p2@SHOX2!0.66!3.56!SHOX2;;chr4:26324474..26324501,+!p16@RBPJ!0.66!3.56!RBPJ;;chrX:66763815..66763854,+!p2@AR!0.65!4.75!AR;;chr9:102584262..102584276,+!p1@NR4A3!0.64!8.32!NR4A3;;chr19:17356189..17356221,-!p2@NR2F6!0.64!5.94!NR2F6;;chr2:192015750..192015793,-!p2@STAT4!0.64!4.75!STAT4;;chr14:75894714..75894733,+!p1@JDP2!0.63!109.30!JDP2;;chr3:178789522..178789564,-!p2@ZMAT3!0.63!28.51!ZMAT3;;chr2:113993052..113993097,-!p2@PAX8!0.63!8.32!PAX8;;chr12:57914286..57914304,-!p1@DDIT3!0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|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000057;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002552;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000161;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000165;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000166;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000344;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001007;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001828;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0003729
|ffid_belonging_in_development=CL:0000134
|fonse_cell_line=
|fonse_cell_line=
|fonse_cell_line_closure=
|fonse_cell_line_closure=
Line 67: Line 42:
|fonse_treatment=
|fonse_treatment=
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Gingival%252c%2520donor4%2520%2528GFH2%2529.CNhs10848.11222-116B7.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Gingival%252c%2520donor4%2520%2528GFH2%2529.CNhs10848.11222-116B7.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Gingival%252c%2520donor4%2520%2528GFH2%2529.CNhs10848.11222-116B7.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Gingival%252c%2520donor4%2520%2528GFH2%2529.CNhs10848.11222-116B7.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Gingival%252c%2520donor4%2520%2528GFH2%2529.CNhs10848.11222-116B7.hg38.nobarcode.ctss.bed.gz
|id=FF:11222-116B7
|is_a=EFO:0002091;;FF:0000063
|is_obsolete=
|library_id=CNhs10848
|library_id_phase_based=2:CNhs10848
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11222
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11222
|name=Fibroblast - Gingival, donor4 (GFH2)
|namespace=FANTOM5
|part_of=
|profile_cagescan=NCig10039,,,
|profile_hcage=CNhs10848,LSID700,release009,COMPLETED
|profile_rnaseq=
|profile_srnaseq=,,,
|refex=http://refex.dbcls.jp/genelist.php?lang
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|rna_box=116
|rna_catalog_number=N/A
|rna_concentration=0.9931
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
|rna_lot_number=
|rna_od260/230=1.986666667
|rna_od260/280=2.043333333
|rna_position=B7
|rna_rin=9.6
|rna_sample_type=total RNA
|rna_tube_id=116B7
|rna_weight_ug=21.8482
|sample_age=22
|sample_category=primary cells
|sample_cell_catalog=N/A
|sample_cell_line=
|sample_cell_lot=N/A
|sample_cell_type=fibroblast
|sample_collaboration=Mitsuhiro Ohshima (Nihon University School of Dentistry)
|sample_company=N/A
|sample_description=
|sample_dev_stage=22 years old adult
|sample_disease=
|sample_donor(cell lot)=
|sample_ethnicity=A
|sample_experimental_condition=
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;1.16697946058923e-220!GO:0005737;cytoplasm;1.82763578024112e-174!GO:0043231;intracellular membrane-bound organelle;1.63821971695616e-149!GO:0043227;membrane-bound organelle;2.83864338194252e-149!GO:0043226;organelle;5.02817320040311e-146!GO:0043229;intracellular organelle;1.08310668722729e-145!GO:0044444;cytoplasmic part;3.4562469490107e-126!GO:0044422;organelle part;3.94925172481703e-112!GO:0044446;intracellular organelle part;8.94648446293671e-111!GO:0032991;macromolecular complex;1.28740232757633e-74!GO:0005515;protein binding;1.02504435861884e-73!GO:0044237;cellular metabolic process;1.46854757106216e-68!GO:0044238;primary metabolic process;9.07546758980651e-68!GO:0030529;ribonucleoprotein complex;7.56307515104947e-63!GO:0043170;macromolecule metabolic process;4.13899496084383e-61!GO:0003723;RNA binding;2.24107647768686e-56!GO:0043233;organelle lumen;5.78739762304726e-56!GO:0031974;membrane-enclosed lumen;5.78739762304726e-56!GO:0005739;mitochondrion;5.05583337575839e-54!GO:0044428;nuclear part;1.30262491079065e-52!GO:0031090;organelle membrane;1.96479317545744e-49!GO:0019538;protein metabolic process;9.61748834898575e-48!GO:0005634;nucleus;9.81940837932731e-48!GO:0044260;cellular macromolecule metabolic process;2.89941218281197e-43!GO:0016043;cellular component organization and biogenesis;1.83042898692843e-42!GO:0044267;cellular protein metabolic process;1.94150557379686e-42!GO:0015031;protein transport;9.55054981892852e-41!GO:0033036;macromolecule localization;1.57522654964471e-40!GO:0005840;ribosome;1.44500302649648e-38!GO:0045184;establishment of protein localization;1.60679466917939e-38!GO:0043234;protein complex;1.62828593441482e-38!GO:0008104;protein localization;5.00495820307751e-38!GO:0006412;translation;5.75791926779626e-38!GO:0009058;biosynthetic process;9.95694279248585e-36!GO:0005829;cytosol;2.06183829047213e-35!GO:0044429;mitochondrial part;4.15145703209035e-35!GO:0003735;structural constituent of ribosome;8.2559833039504e-34!GO:0006396;RNA processing;1.2653851895228e-33!GO:0009059;macromolecule biosynthetic process;5.07239182227741e-33!GO:0044249;cellular biosynthetic process;1.92809354076559e-32!GO:0031981;nuclear lumen;1.45825609344351e-31!GO:0031967;organelle envelope;1.72419650421129e-31!GO:0031975;envelope;3.5494160966268e-31!GO:0033279;ribosomal subunit;2.50345721971427e-30!GO:0043283;biopolymer metabolic process;1.92380838770866e-29!GO:0016071;mRNA metabolic process;5.14156235438092e-29!GO:0046907;intracellular transport;4.60226795682338e-28!GO:0008380;RNA splicing;3.04777480859949e-26!GO:0065003;macromolecular complex assembly;9.1874442944423e-26!GO:0006886;intracellular protein transport;1.03807398643837e-25!GO:0010467;gene expression;4.62297922973457e-25!GO:0006397;mRNA processing;2.03824914044847e-24!GO:0005783;endoplasmic reticulum;2.13225224021421e-24!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;3.92931846241364e-24!GO:0005830;cytosolic ribosome (sensu Eukaryota);6.67201559444827e-23!GO:0005740;mitochondrial envelope;7.90631896465009e-23!GO:0012505;endomembrane system;1.01698375027471e-22!GO:0022607;cellular component assembly;1.51926481659873e-22!GO:0022613;ribonucleoprotein complex biogenesis and assembly;8.05030977183237e-22!GO:0031966;mitochondrial membrane;1.18032281036719e-21!GO:0006996;organelle organization and biogenesis;3.32663707764367e-21!GO:0019866;organelle inner membrane;3.60696137654391e-20!GO:0016462;pyrophosphatase activity;4.5117058280879e-20!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;5.74508163759758e-20!GO:0006119;oxidative phosphorylation;8.23968038331473e-20!GO:0016817;hydrolase activity, acting on acid anhydrides;8.5601512787187e-20!GO:0005794;Golgi apparatus;9.91492567255938e-20!GO:0005654;nucleoplasm;1.41740080368956e-19!GO:0017111;nucleoside-triphosphatase activity;2.20785367910262e-19!GO:0043228;non-membrane-bound organelle;4.93960149718242e-19!GO:0043232;intracellular non-membrane-bound organelle;4.93960149718242e-19!GO:0044432;endoplasmic reticulum part;5.55198444088187e-19!GO:0048770;pigment granule;6.32762388931814e-19!GO:0042470;melanosome;6.32762388931814e-19!GO:0051649;establishment of cellular localization;6.66295145116771e-19!GO:0051641;cellular localization;7.15503998657023e-19!GO:0005743;mitochondrial inner membrane;8.08849301358434e-19!GO:0044445;cytosolic part;9.78785381078614e-19!GO:0000166;nucleotide binding;7.71991370554742e-18!GO:0005681;spliceosome;9.86522693800509e-18!GO:0006457;protein folding;2.24684381220581e-17!GO:0008134;transcription factor binding;5.12101085006998e-17!GO:0006512;ubiquitin cycle;1.40286730600614e-16!GO:0006259;DNA metabolic process;1.40403919513233e-16!GO:0044451;nucleoplasm part;3.25840671498766e-16!GO:0016874;ligase activity;3.85330313479616e-16!GO:0015935;small ribosomal subunit;4.23933791566758e-16!GO:0043285;biopolymer catabolic process;4.83451147061656e-16!GO:0030163;protein catabolic process;2.479746931538e-15!GO:0051603;proteolysis involved in cellular protein catabolic process;2.99174112914757e-15!GO:0000502;proteasome complex (sensu Eukaryota);3.07127087876753e-15!GO:0015934;large ribosomal subunit;3.15045639119313e-15!GO:0019941;modification-dependent protein catabolic process;5.61549216687816e-15!GO:0043632;modification-dependent macromolecule catabolic process;5.61549216687816e-15!GO:0022618;protein-RNA complex assembly;5.65572160661697e-15!GO:0044455;mitochondrial membrane part;6.28491486237832e-15!GO:0007049;cell cycle;7.56291034238007e-15!GO:0044265;cellular macromolecule catabolic process;8.24956774985406e-15!GO:0009057;macromolecule catabolic process;8.43856670550291e-15!GO:0044257;cellular protein catabolic process;9.65853890591017e-15!GO:0031980;mitochondrial lumen;1.00493815724753e-14!GO:0005759;mitochondrial matrix;1.00493815724753e-14!GO:0006511;ubiquitin-dependent protein catabolic process;1.33746810283365e-14!GO:0051186;cofactor metabolic process;2.81558981789528e-14!GO:0012501;programmed cell death;2.81558981789528e-14!GO:0005746;mitochondrial respiratory chain;7.44097657790015e-14!GO:0006915;apoptosis;1.15299563497024e-13!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;1.17120036551884e-13!GO:0042175;nuclear envelope-endoplasmic reticulum network;1.18400283510327e-13!GO:0017076;purine nucleotide binding;2.24658444123616e-13!GO:0032553;ribonucleotide binding;2.27956065077543e-13!GO:0032555;purine ribonucleotide binding;2.27956065077543e-13!GO:0006605;protein targeting;2.87608072848893e-13!GO:0008135;translation factor activity, nucleic acid binding;3.093803164599e-13!GO:0005789;endoplasmic reticulum membrane;4.19951153214335e-13!GO:0008219;cell death;4.47252131638619e-13!GO:0016265;death;4.47252131638619e-13!GO:0016192;vesicle-mediated transport;6.18812336917534e-13!GO:0048193;Golgi vesicle transport;8.08317721136189e-13!GO:0044248;cellular catabolic process;1.05961172575579e-12!GO:0005730;nucleolus;1.19268070798707e-12!GO:0050136;NADH dehydrogenase (quinone) activity;1.62953188756109e-12!GO:0003954;NADH dehydrogenase activity;1.62953188756109e-12!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.62953188756109e-12!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);2.17138032434759e-12!GO:0048523;negative regulation of cellular process;2.99527396868576e-12!GO:0043412;biopolymer modification;5.80069990641465e-12!GO:0051082;unfolded protein binding;5.88132862308205e-12!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;8.58960089790128e-12!GO:0003676;nucleic acid binding;1.39250050914804e-11!GO:0005793;ER-Golgi intermediate compartment;1.39949215151377e-11!GO:0003712;transcription cofactor activity;1.59286483092868e-11!GO:0005761;mitochondrial ribosome;1.69596665990397e-11!GO:0000313;organellar ribosome;1.69596665990397e-11!GO:0022402;cell cycle process;2.97184808007793e-11!GO:0008639;small protein conjugating enzyme activity;2.97184808007793e-11!GO:0006732;coenzyme metabolic process;3.01971879205185e-11!GO:0042775;organelle ATP synthesis coupled electron transport;6.17967973418301e-11!GO:0042773;ATP synthesis coupled electron transport;6.17967973418301e-11!GO:0004842;ubiquitin-protein ligase activity;6.51290928289106e-11!GO:0003743;translation initiation factor activity;7.99551503992747e-11!GO:0006464;protein modification process;9.36858363090422e-11!GO:0030964;NADH dehydrogenase complex (quinone);9.89010260896445e-11!GO:0045271;respiratory chain complex I;9.89010260896445e-11!GO:0005747;mitochondrial respiratory chain complex I;9.89010260896445e-11!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);1.03053273740936e-10!GO:0048519;negative regulation of biological process;1.25586106683021e-10!GO:0019787;small conjugating protein ligase activity;1.80585495056753e-10!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;2.53088833137592e-10!GO:0005524;ATP binding;3.89118092715055e-10!GO:0032559;adenyl ribonucleotide binding;6.79672602017114e-10!GO:0000398;nuclear mRNA splicing, via spliceosome;7.21990749347585e-10!GO:0000375;RNA splicing, via transesterification reactions;7.21990749347585e-10!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;7.21990749347585e-10!GO:0006974;response to DNA damage stimulus;8.01752728980007e-10!GO:0051726;regulation of cell cycle;8.39809624728969e-10!GO:0030554;adenyl nucleotide binding;8.44742915521046e-10!GO:0006413;translational initiation;9.2299963828136e-10!GO:0000074;regulation of progression through cell cycle;9.35023311050343e-10!GO:0003924;GTPase activity;9.67005060469202e-10!GO:0009259;ribonucleotide metabolic process;1.6753889463252e-09!GO:0005635;nuclear envelope;1.90434351774675e-09!GO:0009055;electron carrier activity;2.11022020950473e-09!GO:0006366;transcription from RNA polymerase II promoter;2.69598659124495e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;3.09357468699031e-09!GO:0042623;ATPase activity, coupled;3.14150890509325e-09!GO:0009150;purine ribonucleotide metabolic process;3.26918606765259e-09!GO:0043067;regulation of programmed cell death;3.2801981413747e-09!GO:0016070;RNA metabolic process;3.59095279709447e-09!GO:0042981;regulation of apoptosis;3.82328852567376e-09!GO:0016879;ligase activity, forming carbon-nitrogen bonds;4.00369302371444e-09!GO:0016881;acid-amino acid ligase activity;5.70333602892382e-09!GO:0006163;purine nucleotide metabolic process;5.96107363131167e-09!GO:0006446;regulation of translational initiation;6.8582251800397e-09!GO:0006913;nucleocytoplasmic transport;6.99508013069036e-09!GO:0031965;nuclear membrane;7.83407101026368e-09!GO:0009199;ribonucleoside triphosphate metabolic process;7.91291449509398e-09!GO:0009141;nucleoside triphosphate metabolic process;8.10279955149451e-09!GO:0016887;ATPase activity;8.10632485665691e-09!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;1.01059954423493e-08!GO:0009205;purine ribonucleoside triphosphate metabolic process;1.12317460039516e-08!GO:0009144;purine nucleoside triphosphate metabolic process;1.12317460039516e-08!GO:0043687;post-translational protein modification;1.21679154566959e-08!GO:0044431;Golgi apparatus part;1.30671350976697e-08!GO:0051169;nuclear transport;1.37862448468801e-08!GO:0009056;catabolic process;1.67834166392501e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.71493416085446e-08!GO:0009152;purine ribonucleotide biosynthetic process;1.75296473426882e-08!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;1.79537905973061e-08!GO:0016604;nuclear body;2.04565313335501e-08!GO:0005788;endoplasmic reticulum lumen;2.09865353667624e-08!GO:0009260;ribonucleotide biosynthetic process;2.13564551515861e-08!GO:0016491;oxidoreductase activity;2.32519062914394e-08!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;2.33906894796199e-08!GO:0045333;cellular respiration;2.51385093862342e-08!GO:0015986;ATP synthesis coupled proton transport;3.08227283731745e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;3.08227283731745e-08!GO:0006164;purine nucleotide biosynthetic process;3.26821869898724e-08!GO:0000278;mitotic cell cycle;3.47651862429511e-08!GO:0046034;ATP metabolic process;3.80217930232089e-08!GO:0005768;endosome;4.03299178049368e-08!GO:0044453;nuclear membrane part;4.75669037625956e-08!GO:0050794;regulation of cellular process;4.89013909338099e-08!GO:0019829;cation-transporting ATPase activity;5.28984797585667e-08!GO:0006325;establishment and/or maintenance of chromatin architecture;5.32066269129057e-08!GO:0004386;helicase activity;5.46521526924089e-08!GO:0005773;vacuole;5.56483870308e-08!GO:0007249;I-kappaB kinase/NF-kappaB cascade;6.76870006257979e-08!GO:0051276;chromosome organization and biogenesis;7.18537351962374e-08!GO:0009142;nucleoside triphosphate biosynthetic process;8.12182901024363e-08!GO:0009201;ribonucleoside triphosphate biosynthetic process;8.12182901024363e-08!GO:0008565;protein transporter activity;8.77372321297269e-08!GO:0042254;ribosome biogenesis and assembly;8.79255339390451e-08!GO:0006461;protein complex assembly;1.0112575796579e-07!GO:0016787;hydrolase activity;1.09522214453503e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;1.15044746174355e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;1.15044746174355e-07!GO:0043069;negative regulation of programmed cell death;1.17419038498762e-07!GO:0006888;ER to Golgi vesicle-mediated transport;1.21904401982173e-07!GO:0015078;hydrogen ion transmembrane transporter activity;1.22603889572932e-07!GO:0006323;DNA packaging;1.53274230444829e-07!GO:0009117;nucleotide metabolic process;1.69754126614667e-07!GO:0009719;response to endogenous stimulus;1.75148680374845e-07!GO:0051246;regulation of protein metabolic process;1.8968597354349e-07!GO:0030120;vesicle coat;1.8968597354349e-07!GO:0030662;coated vesicle membrane;1.8968597354349e-07!GO:0048522;positive regulation of cellular process;2.0313885879665e-07!GO:0008026;ATP-dependent helicase activity;2.09558237061499e-07!GO:0009060;aerobic respiration;2.18013850526468e-07!GO:0043066;negative regulation of apoptosis;2.42427431753396e-07!GO:0045786;negative regulation of progression through cell cycle;2.56472255362411e-07!GO:0017038;protein import;2.96922275528173e-07!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;3.30939148183921e-07!GO:0004812;aminoacyl-tRNA ligase activity;3.30939148183921e-07!GO:0016875;ligase activity, forming carbon-oxygen bonds;3.30939148183921e-07!GO:0008361;regulation of cell size;3.35479683572913e-07!GO:0006281;DNA repair;3.44703595928625e-07!GO:0006754;ATP biosynthetic process;3.47477855157184e-07!GO:0006753;nucleoside phosphate metabolic process;3.47477855157184e-07!GO:0016049;cell growth;3.53218063031292e-07!GO:0006916;anti-apoptosis;3.55149888540679e-07!GO:0048475;coated membrane;3.64699422608538e-07!GO:0030117;membrane coat;3.64699422608538e-07!GO:0005839;proteasome core complex (sensu Eukaryota);3.92009149987875e-07!GO:0051188;cofactor biosynthetic process;4.3110164779007e-07!GO:0006399;tRNA metabolic process;5.22746261844387e-07!GO:0043038;amino acid activation;5.42355918009479e-07!GO:0006418;tRNA aminoacylation for protein translation;5.42355918009479e-07!GO:0043039;tRNA aminoacylation;5.42355918009479e-07!GO:0000323;lytic vacuole;6.04852889811954e-07!GO:0005764;lysosome;6.04852889811954e-07!GO:0016469;proton-transporting two-sector ATPase complex;8.43469938925996e-07!GO:0031324;negative regulation of cellular metabolic process;9.79554726483357e-07!GO:0065004;protein-DNA complex assembly;1.11490518621963e-06!GO:0031252;leading edge;1.12842506312245e-06!GO:0005694;chromosome;1.27084646556372e-06!GO:0001558;regulation of cell growth;1.32986520392822e-06!GO:0000139;Golgi membrane;1.65578959235389e-06!GO:0016567;protein ubiquitination;1.89041754707064e-06!GO:0016607;nuclear speck;2.01904500074596e-06!GO:0032446;protein modification by small protein conjugation;2.09416921949613e-06!GO:0016023;cytoplasmic membrane-bound vesicle;2.26402207721569e-06!GO:0031988;membrane-bound vesicle;2.315089755632e-06!GO:0004298;threonine endopeptidase activity;2.85492653332121e-06!GO:0000151;ubiquitin ligase complex;3.16607780489295e-06!GO:0065002;intracellular protein transport across a membrane;3.84345420362792e-06!GO:0031982;vesicle;3.92927886547916e-06!GO:0005525;GTP binding;3.9466484132522e-06!GO:0003713;transcription coactivator activity;3.95958995933924e-06!GO:0006333;chromatin assembly or disassembly;4.02158419454652e-06!GO:0031410;cytoplasmic vesicle;4.36249564945786e-06!GO:0006091;generation of precursor metabolites and energy;4.42812851985793e-06!GO:0005643;nuclear pore;4.53094086318336e-06!GO:0015077;monovalent inorganic cation transmembrane transporter activity;4.53094086318336e-06!GO:0051187;cofactor catabolic process;5.28241701596361e-06!GO:0007243;protein kinase cascade;5.38574742406006e-06!GO:0006099;tricarboxylic acid cycle;5.50161997340619e-06!GO:0046356;acetyl-CoA catabolic process;5.50161997340619e-06!GO:0043566;structure-specific DNA binding;6.59642567172017e-06!GO:0016564;transcription repressor activity;7.01834596433258e-06!GO:0050789;regulation of biological process;7.43653000716616e-06!GO:0009108;coenzyme biosynthetic process;8.20503462680887e-06!GO:0006752;group transfer coenzyme metabolic process;8.64561321184706e-06!GO:0048518;positive regulation of biological process;1.03491659265718e-05!GO:0009109;coenzyme catabolic process;1.07342580408276e-05!GO:0051170;nuclear import;1.18329524909843e-05!GO:0005770;late endosome;1.23020578483585e-05!GO:0045259;proton-transporting ATP synthase complex;1.23122698284063e-05!GO:0003714;transcription corepressor activity;1.25143208227727e-05!GO:0006084;acetyl-CoA metabolic process;1.37985312184425e-05!GO:0044427;chromosomal part;1.41295296561537e-05!GO:0006606;protein import into nucleus;1.47977695451989e-05!GO:0006613;cotranslational protein targeting to membrane;1.47977695451989e-05!GO:0051789;response to protein stimulus;1.59740113963862e-05!GO:0006986;response to unfolded protein;1.59740113963862e-05!GO:0044440;endosomal part;1.65795512673442e-05!GO:0010008;endosome membrane;1.65795512673442e-05!GO:0003697;single-stranded DNA binding;1.6933073268378e-05!GO:0046930;pore complex;1.6933073268378e-05!GO:0009892;negative regulation of metabolic process;1.78160516535775e-05!GO:0032561;guanyl ribonucleotide binding;2.10682720180637e-05!GO:0019001;guanyl nucleotide binding;2.10682720180637e-05!GO:0007005;mitochondrion organization and biogenesis;2.34822666062225e-05!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;2.66886327940463e-05!GO:0005798;Golgi-associated vesicle;2.72228011787422e-05!GO:0000245;spliceosome assembly;3.04606423402459e-05!GO:0016563;transcription activator activity;3.05918026293626e-05!GO:0030532;small nuclear ribonucleoprotein complex;3.14185539969443e-05!GO:0050657;nucleic acid transport;3.58702942151451e-05!GO:0051236;establishment of RNA localization;3.58702942151451e-05!GO:0050658;RNA transport;3.58702942151451e-05!GO:0006403;RNA localization;3.87773720374504e-05!GO:0000785;chromatin;4.78931843766996e-05!GO:0016568;chromatin modification;4.89315860943842e-05!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;5.00392862147022e-05!GO:0030867;rough endoplasmic reticulum membrane;5.19000002302455e-05!GO:0015980;energy derivation by oxidation of organic compounds;5.42802748723173e-05!GO:0005667;transcription factor complex;5.87700913350988e-05!GO:0031202;RNA splicing factor activity, transesterification mechanism;7.03454967053688e-05!GO:0016481;negative regulation of transcription;7.44038090625654e-05!GO:0008654;phospholipid biosynthetic process;7.48942458300013e-05!GO:0051301;cell division;7.48942458300013e-05!GO:0006260;DNA replication;7.79079606583506e-05!GO:0045454;cell redox homeostasis;8.35843129701188e-05!GO:0016853;isomerase activity;8.57840932608434e-05!GO:0006334;nucleosome assembly;9.03415810100463e-05!GO:0006364;rRNA processing;9.24521661413271e-05!GO:0000087;M phase of mitotic cell cycle;9.41930397046197e-05!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;9.49307594015046e-05!GO:0016859;cis-trans isomerase activity;9.86485070005041e-05!GO:0040008;regulation of growth;0.000103169898296832!GO:0006612;protein targeting to membrane;0.000103265632651949!GO:0031968;organelle outer membrane;0.000104753533670885!GO:0030133;transport vesicle;0.000113034769834722!GO:0043623;cellular protein complex assembly;0.000113984201269365!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.000114785090027063!GO:0022403;cell cycle phase;0.000116444032006006!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.00011999176768832!GO:0006793;phosphorus metabolic process;0.000131867137625307!GO:0006796;phosphate metabolic process;0.000131867137625307!GO:0019867;outer membrane;0.000132260031442631!GO:0016740;transferase activity;0.000136200027795042!GO:0007067;mitosis;0.000137351399087606!GO:0005762;mitochondrial large ribosomal subunit;0.000137351399087606!GO:0000315;organellar large ribosomal subunit;0.000137351399087606!GO:0016072;rRNA metabolic process;0.000142466413990684!GO:0016310;phosphorylation;0.000143399433264373!GO:0031497;chromatin assembly;0.000164637324864173!GO:0009967;positive regulation of signal transduction;0.00017936997738322!GO:0005769;early endosome;0.000201168547435083!GO:0015630;microtubule cytoskeleton;0.000212823846287803!GO:0003724;RNA helicase activity;0.000238284355852625!GO:0005048;signal sequence binding;0.000254217095644809!GO:0051427;hormone receptor binding;0.000264353210185373!GO:0048468;cell development;0.00030211309921429!GO:0008250;oligosaccharyl transferase complex;0.000353422632159939!GO:0005791;rough endoplasmic reticulum;0.00036284978613205!GO:0019843;rRNA binding;0.000378503124208961!GO:0005741;mitochondrial outer membrane;0.000421531109637281!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000458714009127262!GO:0007050;cell cycle arrest;0.000463186997350587!GO:0044262;cellular carbohydrate metabolic process;0.000500364640347977!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.00051764443702663!GO:0035257;nuclear hormone receptor binding;0.000531194426174378!GO:0004576;oligosaccharyl transferase activity;0.000536548952283835!GO:0033116;ER-Golgi intermediate compartment membrane;0.000564608660528943!GO:0043021;ribonucleoprotein binding;0.000573669547018654!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.000579036159836776!GO:0015399;primary active transmembrane transporter activity;0.000579036159836776!GO:0005885;Arp2/3 protein complex;0.00057955552411764!GO:0009165;nucleotide biosynthetic process;0.000611656324047901!GO:0051028;mRNA transport;0.000674649831558189!GO:0016044;membrane organization and biogenesis;0.000728004769680503!GO:0006950;response to stress;0.000752886139122017!GO:0005905;coated pit;0.000756718636422463!GO:0030036;actin cytoskeleton organization and biogenesis;0.000805396754792393!GO:0030663;COPI coated vesicle membrane;0.00085714541812837!GO:0030126;COPI vesicle coat;0.00085714541812837!GO:0022890;inorganic cation transmembrane transporter activity;0.0008683430043311!GO:0016779;nucleotidyltransferase activity;0.000917530942748989!GO:0019899;enzyme binding;0.000917530942748989!GO:0065007;biological regulation;0.000929296313241865!GO:0009615;response to virus;0.00100765993534727!GO:0051329;interphase of mitotic cell cycle;0.00108968194387164!GO:0005813;centrosome;0.00110794439929607!GO:0030027;lamellipodium;0.00113985483180007!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00119640641323793!GO:0031072;heat shock protein binding;0.00121062127317885!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.00122851695152394!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00134662333734452!GO:0051920;peroxiredoxin activity;0.00135865812633872!GO:0018196;peptidyl-asparagine modification;0.00137051112942131!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00137051112942131!GO:0045892;negative regulation of transcription, DNA-dependent;0.00141910670459374!GO:0000314;organellar small ribosomal subunit;0.00155806665357356!GO:0005763;mitochondrial small ribosomal subunit;0.00155806665357356!GO:0003690;double-stranded DNA binding;0.00178858635054843!GO:0030137;COPI-coated vesicle;0.00201377777599137!GO:0065009;regulation of a molecular function;0.00209273011700056!GO:0005815;microtubule organizing center;0.00217875285287656!GO:0043492;ATPase activity, coupled to movement of substances;0.00227643363316554!GO:0008632;apoptotic program;0.00245522678063663!GO:0003729;mRNA binding;0.00245522678063663!GO:0051252;regulation of RNA metabolic process;0.00248420490851797!GO:0015992;proton transport;0.00249562428751729!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.00251530606744633!GO:0030659;cytoplasmic vesicle membrane;0.0025261691589374!GO:0006818;hydrogen transport;0.00274102039954248!GO:0046474;glycerophospholipid biosynthetic process;0.00279904386464725!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00296306645890186!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00296306645890186!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00296306645890186!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00300983193506772!GO:0005852;eukaryotic translation initiation factor 3 complex;0.0031561689372441!GO:0008186;RNA-dependent ATPase activity;0.0031561689372441!GO:0048500;signal recognition particle;0.00318220200374371!GO:0045893;positive regulation of transcription, DNA-dependent;0.00338009122911393!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.00346337776230007!GO:0043488;regulation of mRNA stability;0.00346337776230007!GO:0043487;regulation of RNA stability;0.00346337776230007!GO:0006891;intra-Golgi vesicle-mediated transport;0.00396663632705859!GO:0030132;clathrin coat of coated pit;0.00402114042624521!GO:0006509;membrane protein ectodomain proteolysis;0.00402158213173102!GO:0033619;membrane protein proteolysis;0.00402158213173102!GO:0007040;lysosome organization and biogenesis;0.00404384920671933!GO:0042802;identical protein binding;0.00425751662304164!GO:0016363;nuclear matrix;0.00433746440852967!GO:0045792;negative regulation of cell size;0.00434960577018834!GO:0051325;interphase;0.00451653367148309!GO:0051128;regulation of cellular component organization and biogenesis;0.00451653367148309!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00464138557363173!GO:0001726;ruffle;0.00474397979305587!GO:0030118;clathrin coat;0.00475220781966441!GO:0030145;manganese ion binding;0.00479800228967524!GO:0000279;M phase;0.00486109857836861!GO:0043065;positive regulation of apoptosis;0.00489120438808608!GO:0030176;integral to endoplasmic reticulum membrane;0.00519398150524606!GO:0008610;lipid biosynthetic process;0.00520683711416448!GO:0045941;positive regulation of transcription;0.00537392949039539!GO:0030029;actin filament-based process;0.00538524435378086!GO:0051287;NAD binding;0.00552803441404755!GO:0046489;phosphoinositide biosynthetic process;0.00558942648184213!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.00570841408710182!GO:0016126;sterol biosynthetic process;0.00581198877523181!GO:0006979;response to oxidative stress;0.00581198877523181!GO:0019752;carboxylic acid metabolic process;0.00592463540633676!GO:0030308;negative regulation of cell growth;0.00592997487270454!GO:0043068;positive regulation of programmed cell death;0.00596551867330166!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.00599019407717913!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.00601167909643996!GO:0030521;androgen receptor signaling pathway;0.00603935406676551!GO:0051540;metal cluster binding;0.00612897823215861!GO:0051536;iron-sulfur cluster binding;0.00612897823215861!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00619115572808046!GO:0048487;beta-tubulin binding;0.00626596157735966!GO:0044433;cytoplasmic vesicle part;0.00632278904274682!GO:0006082;organic acid metabolic process;0.00634483429896251!GO:0051168;nuclear export;0.00644544927233098!GO:0006402;mRNA catabolic process;0.00661084130560234!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00684022870015962!GO:0045047;protein targeting to ER;0.00684022870015962!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00685339408816332!GO:0015002;heme-copper terminal oxidase activity;0.00685339408816332!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00685339408816332!GO:0004129;cytochrome-c oxidase activity;0.00685339408816332!GO:0046467;membrane lipid biosynthetic process;0.00706475999812895!GO:0008092;cytoskeletal protein binding;0.00706475999812895!GO:0045045;secretory pathway;0.00706475999812895!GO:0043284;biopolymer biosynthetic process;0.00716742057239732!GO:0008154;actin polymerization and/or depolymerization;0.00716742057239732!GO:0008139;nuclear localization sequence binding;0.00736440376937754!GO:0022415;viral reproductive process;0.00760426868412082!GO:0030658;transport vesicle membrane;0.0076396200427374!GO:0004004;ATP-dependent RNA helicase activity;0.00777407338274799!GO:0006790;sulfur metabolic process;0.00787349108852556!GO:0005581;collagen;0.00827072373710307!GO:0000082;G1/S transition of mitotic cell cycle;0.00859828759535227!GO:0030134;ER to Golgi transport vesicle;0.00890057227080849!GO:0030127;COPII vesicle coat;0.00891143075053055!GO:0012507;ER to Golgi transport vesicle membrane;0.00891143075053055!GO:0017166;vinculin binding;0.00895268392304274!GO:0006650;glycerophospholipid metabolic process;0.00895268392304274!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00910858076451523!GO:0005774;vacuolar membrane;0.00922508841775244!GO:0006118;electron transport;0.00929658710895304!GO:0000059;protein import into nucleus, docking;0.0103118313743071!GO:0007033;vacuole organization and biogenesis;0.0105996380986819!GO:0031625;ubiquitin protein ligase binding;0.0105996380986819!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0109082269001196!GO:0045936;negative regulation of phosphate metabolic process;0.011293877571528!GO:0032984;macromolecular complex disassembly;0.0116063609689817!GO:0012506;vesicle membrane;0.0117801202457196!GO:0050662;coenzyme binding;0.0126176493611516!GO:0050681;androgen receptor binding;0.0126383329968057!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0126883401090745!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0126883401090745!GO:0035258;steroid hormone receptor binding;0.0128131414392927!GO:0048471;perinuclear region of cytoplasm;0.0129563133167731!GO:0006383;transcription from RNA polymerase III promoter;0.0131545471448334!GO:0007264;small GTPase mediated signal transduction;0.0135599009701492!GO:0016281;eukaryotic translation initiation factor 4F complex;0.0137157360703861!GO:0004177;aminopeptidase activity;0.0137265777070904!GO:0051045;negative regulation of membrane protein ectodomain proteolysis;0.0141156148039075!GO:0051043;regulation of membrane protein ectodomain proteolysis;0.0141156148039075!GO:0005862;muscle thin filament tropomyosin;0.0141842058263231!GO:0030041;actin filament polymerization;0.0145914192867938!GO:0006414;translational elongation;0.0147250214161763!GO:0008312;7S RNA binding;0.0150127325554727!GO:0005869;dynactin complex;0.0153247766291519!GO:0030119;AP-type membrane coat adaptor complex;0.0154758279981975!GO:0008484;sulfuric ester hydrolase activity;0.0155133133051305!GO:0006352;transcription initiation;0.015607459203026!GO:0016197;endosome transport;0.0158863850844702!GO:0045926;negative regulation of growth;0.0161812258719352!GO:0051087;chaperone binding;0.0161939089432422!GO:0031529;ruffle organization and biogenesis;0.0163117147200369!GO:0043681;protein import into mitochondrion;0.0164343014089044!GO:0030518;steroid hormone receptor signaling pathway;0.017150077704686!GO:0030660;Golgi-associated vesicle membrane;0.0175459625507799!GO:0007010;cytoskeleton organization and biogenesis;0.0175826842298417!GO:0003899;DNA-directed RNA polymerase activity;0.0176756308725839!GO:0050811;GABA receptor binding;0.0179109477861955!GO:0008283;cell proliferation;0.0180349357328796!GO:0000287;magnesium ion binding;0.0180349357328796!GO:0031902;late endosome membrane;0.0180605478227202!GO:0046483;heterocycle metabolic process;0.0185286861739868!GO:0016251;general RNA polymerase II transcription factor activity;0.0186262564510796!GO:0006595;polyamine metabolic process;0.0188242147232708!GO:0044437;vacuolar part;0.0191377658902335!GO:0033559;unsaturated fatty acid metabolic process;0.0194943047503204!GO:0006636;unsaturated fatty acid biosynthetic process;0.0194943047503204!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.0196373805174939!GO:0033043;regulation of organelle organization and biogenesis;0.0196373805174939!GO:0035035;histone acetyltransferase binding;0.0197039583283441!GO:0043241;protein complex disassembly;0.0200824940086971!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0202442816010024!GO:0006626;protein targeting to mitochondrion;0.0203994416018179!GO:0004228;gelatinase A activity;0.0204885347492266!GO:0001955;blood vessel maturation;0.0204885347492266!GO:0051052;regulation of DNA metabolic process;0.0208213046586804!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.021084794869553!GO:0032940;secretion by cell;0.0223327699209793!GO:0000049;tRNA binding;0.0225306020665987!GO:0006740;NADPH regeneration;0.0229501332863779!GO:0006098;pentose-phosphate shunt;0.0229501332863779!GO:0000339;RNA cap binding;0.0232039604030754!GO:0042326;negative regulation of phosphorylation;0.0233347513764679!GO:0008180;signalosome;0.0233347513764679!GO:0046519;sphingoid metabolic process;0.0235760007699239!GO:0007160;cell-matrix adhesion;0.0235824383724845!GO:0006897;endocytosis;0.0235926343945829!GO:0010324;membrane invagination;0.0235926343945829!GO:0033673;negative regulation of kinase activity;0.0235926343945829!GO:0006469;negative regulation of protein kinase activity;0.0235926343945829!GO:0043022;ribosome binding;0.0240909200094998!GO:0031589;cell-substrate adhesion;0.0243437062781621!GO:0043624;cellular protein complex disassembly;0.0243669678451395!GO:0006497;protein amino acid lipidation;0.0244035737003358!GO:0006401;RNA catabolic process;0.0251381924641612!GO:0031418;L-ascorbic acid binding;0.0253285752016781!GO:0005520;insulin-like growth factor binding;0.0253331091427887!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.0256612102979046!GO:0030032;lamellipodium biogenesis;0.0256631889790213!GO:0006917;induction of apoptosis;0.0256631889790213!GO:0030384;phosphoinositide metabolic process;0.0258099659514931!GO:0016584;nucleosome positioning;0.026912224593103!GO:0008064;regulation of actin polymerization and/or depolymerization;0.026912224593103!GO:0030131;clathrin adaptor complex;0.026912224593103!GO:0001952;regulation of cell-matrix adhesion;0.0271706884969343!GO:0007034;vacuolar transport;0.0273751423394789!GO:0008047;enzyme activator activity;0.0274022020181348!GO:0022408;negative regulation of cell-cell adhesion;0.0274270439883529!GO:0006289;nucleotide-excision repair;0.0274617984997187!GO:0016272;prefoldin complex;0.0276689372441578!GO:0005765;lysosomal membrane;0.0278696058244079!GO:0006354;RNA elongation;0.0278819457269106!GO:0005062;hematopoietin/interferon-class (D200-domain) cytokine receptor signal transducer activity;0.0282355018154437!GO:0019798;procollagen-proline dioxygenase activity;0.0284033684212394!GO:0050790;regulation of catalytic activity;0.0284033684212394!GO:0051101;regulation of DNA binding;0.0284608506084879!GO:0007242;intracellular signaling cascade;0.0284608506084879!GO:0019222;regulation of metabolic process;0.0284748406727541!GO:0030833;regulation of actin filament polymerization;0.0285152375010038!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.0285152375010038!GO:0005832;chaperonin-containing T-complex;0.0285286973556072!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0292319980362692!GO:0031543;peptidyl-proline dioxygenase activity;0.0293879784469845!GO:0007006;mitochondrial membrane organization and biogenesis;0.0296886802167008!GO:0031901;early endosome membrane;0.0304738303796208!GO:0006261;DNA-dependent DNA replication;0.0306012564097058!GO:0008637;apoptotic mitochondrial changes;0.0310271159354127!GO:0005637;nuclear inner membrane;0.0312047701025365!GO:0006672;ceramide metabolic process;0.0312205560195537!GO:0012502;induction of programmed cell death;0.0312630879969504!GO:0005159;insulin-like growth factor receptor binding;0.031342285014197!GO:0030100;regulation of endocytosis;0.0319487136481409!GO:0030125;clathrin vesicle coat;0.0321074073383002!GO:0030665;clathrin coated vesicle membrane;0.0321074073383002!GO:0040029;regulation of gene expression, epigenetic;0.032573131897554!GO:0006695;cholesterol biosynthetic process;0.0328453944450059!GO:0000209;protein polyubiquitination;0.0331629842030692!GO:0007179;transforming growth factor beta receptor signaling pathway;0.0333600528129246!GO:0006611;protein export from nucleus;0.0333931385244127!GO:0005819;spindle;0.0333931385244127!GO:0030880;RNA polymerase complex;0.0337349168000699!GO:0032906;transforming growth factor-beta2 production;0.0344673314382243!GO:0032909;regulation of transforming growth factor-beta2 production;0.0344673314382243!GO:0007030;Golgi organization and biogenesis;0.0350311263310323!GO:0051348;negative regulation of transferase activity;0.0352213402414404!GO:0008234;cysteine-type peptidase activity;0.035245534537899!GO:0022411;cellular component disassembly;0.0356691094370986!GO:0003682;chromatin binding;0.0357642563327555!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.036393013760242!GO:0051539;4 iron, 4 sulfur cluster binding;0.0365858073743262!GO:0004860;protein kinase inhibitor activity;0.0365858073743262!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0384585152467498!GO:0010257;NADH dehydrogenase complex assembly;0.0384585152467498!GO:0033108;mitochondrial respiratory chain complex assembly;0.0384585152467498!GO:0008383;manganese superoxide dismutase activity;0.0384585152467498!GO:0001315;age-dependent response to reactive oxygen species;0.0384585152467498!GO:0048146;positive regulation of fibroblast proliferation;0.0384585152467498!GO:0000075;cell cycle checkpoint;0.0388644382259555!GO:0000786;nucleosome;0.0398444741579463!GO:0003923;GPI-anchor transamidase activity;0.0398444741579463!GO:0016255;attachment of GPI anchor to protein;0.0398444741579463!GO:0042765;GPI-anchor transamidase complex;0.0398444741579463!GO:0030330;DNA damage response, signal transduction by p53 class mediator;0.0398444741579463!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.0404486780686438!GO:0048144;fibroblast proliferation;0.0406005739337825!GO:0048145;regulation of fibroblast proliferation;0.0406005739337825!GO:0008022;protein C-terminus binding;0.0407929163576155!GO:0051059;NF-kappaB binding;0.0412056577928127!GO:0046979;TAP2 binding;0.041570980975749!GO:0046977;TAP binding;0.041570980975749!GO:0046978;TAP1 binding;0.041570980975749!GO:0007041;lysosomal transport;0.0422661838501309!GO:0005684;U2-dependent spliceosome;0.0424114907276423!GO:0009966;regulation of signal transduction;0.0424114907276423!GO:0030911;TPR domain binding;0.0436598517274013!GO:0030984;kininogen binding;0.0443031303343666!GO:0004213;cathepsin B activity;0.0443031303343666!GO:0000792;heterochromatin;0.0449571917831207!GO:0004527;exonuclease activity;0.0451646116351617!GO:0006778;porphyrin metabolic process;0.0451646116351617!GO:0033013;tetrapyrrole metabolic process;0.0451646116351617!GO:0008538;proteasome activator activity;0.0451747462395719!GO:0005586;collagen type III;0.0451747462395719!GO:0006376;mRNA splice site selection;0.0455506094678094!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0455506094678094!GO:0006506;GPI anchor biosynthetic process;0.045925368354079!GO:0000288;mRNA catabolic process, deadenylation-dependent decay;0.0461987416151005!GO:0001953;negative regulation of cell-matrix adhesion;0.0462367382837355!GO:0042158;lipoprotein biosynthetic process;0.0466606322544021!GO:0006984;ER-nuclear signaling pathway;0.0474647021993051!GO:0007178;transmembrane receptor protein serine/threonine kinase signaling pathway;0.0487390682401237!GO:0006892;post-Golgi vesicle-mediated transport;0.0496156297765059
|sample_id=11222
|sample_note=machine failed, remainder reloaded, low amount
|sample_sex=male
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_tissue=gum
|top_motifs=ZNF238:2.23120268032;ESR1:2.20077088531;TAL1_TCF{3,4,12}:1.56675570685;IRF1,2:1.55764858298;HES1:1.53086436786;NKX2-2,8:1.51169454215;SPZ1:1.4546573499;HMGA1,2:1.42690486448;GZF1:1.39426924362;NFIX:1.33181598779;IRF7:1.26132719643;TFAP4:1.21362263543;MYBL2:1.20292922238;TP53:1.19561515596;MAZ:1.17007001631;MAFB:1.15625226572;GLI1..3:1.15536010657;ALX4:1.14585102895;EBF1:1.14210214718;PAX3,7:1.12402212585;TFCP2:1.11585914126;FOXL1:1.09232357498;PATZ1:1.01225486177;LHX3,4:1.00516125503;TFDP1:0.925999130442;NFATC1..3:0.870330063134;KLF4:0.864116968888;TFAP2{A,C}:0.860593164822;FOXO1,3,4:0.859315713463;NKX2-3_NKX2-5:0.856336776221;PAX5:0.786140121167;SREBF1,2:0.771097844273;TEAD1:0.762373798208;PAX1,9:0.759092961888;NKX6-1,2:0.753632354159;TLX1..3_NFIC{dimer}:0.742238222229;HAND1,2:0.740717896137;NHLH1,2:0.733725647291;ZBTB6:0.731270530515;ATF6:0.68424070201;GTF2A1,2:0.673010829881;HMX1:0.668083540223;NKX3-1:0.58467357098;ZNF423:0.57928029673;YY1:0.573633888579;PRDM1:0.546878984576;UFEwm:0.535095721753;GTF2I:0.526342086275;DBP:0.507728701641;TBX4,5:0.487374690148;NFE2L2:0.477689525797;RXR{A,B,G}:0.459496917499;MTF1:0.457921871941;TFAP2B:0.452924964401;EVI1:0.438091549906;NANOG{mouse}:0.433672217137;SOX17:0.422413299598;PPARG:0.420712611352;MZF1:0.411426860741;GFI1:0.410523265967;HBP1_HMGB_SSRP1_UBTF:0.403884223195;PDX1:0.401264688145;NKX3-2:0.396817698209;HIC1:0.393523052041;MYB:0.346986605395;NR3C1:0.32210552749;FOXA2:0.319678017662;EGR1..3:0.304722166278;RREB1:0.297675719978;GATA4:0.296412383435;NR6A1:0.285267336103;LEF1_TCF7_TCF7L1,2:0.245267612557;CEBPA,B_DDIT3:0.244865294793;HSF1,2:0.241519440274;MYFfamily:0.23884093774;MTE{core}:0.238808610955;HOX{A6,A7,B6,B7}:0.227727747637;ZNF148:0.226146189303;SMAD1..7,9:0.223160230289;HLF:0.218584186911;NFIL3:0.195754977725;ADNP_IRX_SIX_ZHX:0.175986974389;GFI1B:0.175413733544;XBP1:0.169887086121;RORA:0.15737095577;SRF:0.153037498524;MED-1{core}:0.131403655653;TBP:0.124352369897;XCPE1{core}:0.0919756752386;PRRX1,2:0.0859007805813;REST:0.0829990758736;HOX{A4,D4}:0.0731624044184;FOX{I1,J2}:0.0695075634209;HNF4A_NR2F1,2:0.0569099822678;STAT2,4,6:0.0532205711126;DMAP1_NCOR{1,2}_SMARC:0.0528940515903;SP1:0.0421029767528;ATF5_CREB3:0.0411241292412;FOS_FOS{B,L1}_JUN{B,D}:0.0320037552997;HNF1A:0.015294463613;BACH2:0.0122783734455;BPTF:0.00968638788455;EN1,2:0.00836000687458;NFKB1_REL_RELA:-0.0162171359473;HOXA9_MEIS1:-0.0358795873106;bHLH_family:-0.0456628203499;RBPJ:-0.0477162844177;NFE2L1:-0.0685137745105;GCM1,2:-0.0717402087379;CDC5L:-0.0850294228453;RUNX1..3:-0.0856506157887;ZFP161:-0.0975428719195;ZIC1..3:-0.135078758678;NFE2:-0.143520935019;NR1H4:-0.149267345744;FOXD3:-0.150315430814;ZNF384:-0.161149226065;FOSL2:-0.179328657929;TEF:-0.196367759171;SOX5:-0.202410474046;NR5A1,2:-0.255283225172;FOX{F1,F2,J1}:-0.265490557175;MEF2{A,B,C,D}:-0.268964105722;TOPORS:-0.292483548729;ESRRA:-0.292688458173;RFX1:-0.294345300875;CREB1:-0.295631661257;ETS1,2:-0.299001753024;IKZF1:-0.312723591219;RFX2..5_RFXANK_RFXAP:-0.333351500525;CRX:-0.337298341993;LMO2:-0.345905817213;PAX2:-0.347170265259;AHR_ARNT_ARNT2:-0.351691455246;PBX1:-0.357521625493;FOX{D1,D2}:-0.379383617835;POU5F1:-0.403578112705;E2F1..5:-0.419102602187;POU3F1..4:-0.431264001178;PAX8:-0.441211414587;NKX2-1,4:-0.460118782008;STAT5{A,B}:-0.466390661207;ATF2:-0.475170967161;BREu{core}:-0.4758150264;HOX{A5,B5}:-0.482465466018;POU6F1:-0.482751562591;JUN:-0.498399240605;GATA6:-0.501318588002;RXRA_VDR{dimer}:-0.503440407186;ZNF143:-0.511898103673;PAX4:-0.512718187108;ATF4:-0.514111143328;ELK1,4_GABP{A,B1}:-0.521948221552;FOXP1:-0.522393898835;ELF1,2,4:-0.53362880579;T:-0.535182772973;SPIB:-0.535464271897;AIRE:-0.563030551545;SPI1:-0.565854765488;NANOG:-0.585692409558;NRF1:-0.591053543395;CDX1,2,4:-0.596137217563;TLX2:-0.624487809822;EP300:-0.638908471454;MYOD1:-0.658347748039;TGIF1:-0.686565811615;ARID5B:-0.692114434618;FOXM1:-0.700366572463;CUX2:-0.730759241364;STAT1,3:-0.733292097507;SOX2:-0.746397283275;SOX{8,9,10}:-0.787718740806;AR:-0.814727370356;HIF1A:-0.828882720117;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.849477369353;OCT4_SOX2{dimer}:-0.883446495889;NFY{A,B,C}:-0.908867358198;ZEB1:-0.920337121413;IKZF2:-0.938970953709;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.943183092192;FOXQ1:-0.976862215079;POU2F1..3:-1.00874979323;FOXN1:-1.0186216736;ALX1:-1.02425803096;SNAI1..3:-1.03792710942;FOXP3:-1.04147257539;ONECUT1,2:-1.12173062473;PITX1..3:-1.12328545115;POU1F1:-1.13518109727;ZBTB16:-1.15656421556;PAX6:-1.21064069048;VSX1,2:-1.60207564264
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11222-116B7;search_select_hide=table117:FF:11222-116B7
}}
}}

Latest revision as of 16:25, 3 June 2020

Name:Fibroblast - Gingival, donor4 (GFH2)
Species:Human (Homo sapiens)
Library ID:CNhs10848
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6, 7, 8, 9, 10
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuegum
dev stage22 years old adult
sexmale
age22
cell typefibroblast
cell lineNA
companyN/A
collaborationMitsuhiro Ohshima (Nihon University School of Dentistry)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberN/A
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00004784
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs10848 CAGE DRX008263 DRR009135
Accession ID Hg19

Library idBAMCTSS
CNhs10848 DRZ000560 DRZ001945
Accession ID Hg38

Library idBAMCTSS
CNhs10848 DRZ011910 DRZ013295
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload
HumanCAGEScan Download raw sequence, BAM & CTSS

Library id3prime-FASTQ5prime-FASTQBAMCTSS
NCig10039downloaddownloaddownloaddownload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.168
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.0659
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.695
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0.34
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.00972
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.404
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.528
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.174
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.166
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.26
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0.34
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth-0.0925
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.134
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0.34
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.91
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.23
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs10848

Jaspar motifP-value
MA0002.20.735
MA0003.10.164
MA0004.10.456
MA0006.10.0576
MA0007.10.48
MA0009.10.595
MA0014.10.797
MA0017.10.834
MA0018.29.62262e-4
MA0019.10.823
MA0024.10.00979
MA0025.10.412
MA0027.10.465
MA0028.14.40105e-4
MA0029.10.3
MA0030.10.631
MA0031.10.287
MA0035.20.0532
MA0038.10.711
MA0039.20.0157
MA0040.10.413
MA0041.10.272
MA0042.10.191
MA0043.19.87394e-4
MA0046.10.469
MA0047.20.763
MA0048.10.704
MA0050.13.29274e-17
MA0051.19.44473e-13
MA0052.10.206
MA0055.10.48
MA0057.10.423
MA0058.10.283
MA0059.10.162
MA0060.11.18008e-4
MA0061.10.365
MA0062.24.02308e-8
MA0065.20.598
MA0066.10.272
MA0067.10.00932
MA0068.10.417
MA0069.10.675
MA0070.10.287
MA0071.10.387
MA0072.10.748
MA0073.10.801
MA0074.10.423
MA0076.12.12678e-4
MA0077.10.807
MA0078.10.901
MA0079.20.771
MA0080.21.31473e-5
MA0081.10.297
MA0083.10.191
MA0084.10.0251
MA0087.10.0608
MA0088.10.474
MA0090.10.00604
MA0091.10.0217
MA0092.10.405
MA0093.10.372
MA0099.20.698
MA0100.10.529
MA0101.10.9
MA0102.20.919
MA0103.10.00749
MA0104.20.00552
MA0105.10.89
MA0106.10.0214
MA0107.10.439
MA0108.20.0868
MA0111.10.925
MA0112.20.0153
MA0113.10.548
MA0114.10.917
MA0115.10.0907
MA0116.10.528
MA0117.10.103
MA0119.10.338
MA0122.10.741
MA0124.10.594
MA0125.10.589
MA0131.10.108
MA0135.10.879
MA0136.18.82082e-7
MA0137.20.626
MA0138.20.704
MA0139.10.774
MA0140.10.284
MA0141.10.548
MA0142.10.347
MA0143.10.9
MA0144.10.845
MA0145.10.33
MA0146.10.994
MA0147.10.00226
MA0148.10.642
MA0149.10.789
MA0150.10.207
MA0152.10.0554
MA0153.10.682
MA0154.10.817
MA0155.10.0308
MA0156.12.14397e-6
MA0157.10.219
MA0159.10.0412
MA0160.10.782
MA0162.10.031
MA0163.10.33
MA0164.10.459
MA0258.10.0949
MA0259.10.0123



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs10848

Novel motifP-value
10.32
100.456
1000.598
1010.725
1020.0385
1030.58
1040.221
1050.638
1060.16
1070.046
1080.535
1090.992
110.963
1100.649
1110.0493
1120.445
1130.887
1140.389
1150.363
1160.293
1170.508
1180.222
1190.665
120.0102
1200.35
1210.264
1220.0262
1230.00442
1240.286
1250.641
1260.54
1270.439
1280.0756
1290.246
130.0248
1300.281
1310.569
1320.197
1330.171
1340.0229
1350.786
1360.69
1370.355
1380.58
1390.19
140.464
1400.0429
1410.0102
1420.889
1430.846
1440.119
1450.986
1460.3
1470.277
1480.834
1490.531
150.688
1500.223
1510.859
1520.0314
1530.661
1540.518
1550.00461
1560.445
1570.781
1580.0551
1590.469
160.151
1600.595
1610.979
1620.126
1630.754
1640.541
1650.664
1660.00686
1670.231
1680.828
1690.0788
170.921
180.123
190.00476
20.0715
200.14
210.484
220.39
230.155
240.814
250.138
260.666
270.537
280.505
290.172
30.566
300.0881
310.289
321.64388e-12
330.652
340.336
350.783
360.0402
370.623
380.537
390.568
40.0779
400.08
410.612
420.706
430.564
440.998
450.323
460.506
470.435
480.531
490.937
50.486
500.514
510.696
520.353
530.556
540.526
550.121
560.72
570.907
580.302
590.048
60.6
600.879
610.724
620.832
630.453
640.693
650.167
660.618
670.819
680.865
690.394
70.0973
700.434
710.605
720.639
730.168
740.242
750.417
760.982
770.21
780.526
790.00423
80.566
800.534
810.53
820.379
830.254
840.631
850.469
860.956
870.458
880.238
890.253
90.354
900.854
910.323
920.286
930.63
940.352
950.552
960.655
970.289
980.292
992.62935e-4



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs10848


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0000057 (fibroblast)
0002552 (fibroblast of gingiva)

UBERON: Anatomy
0000468 (multi-cellular organism)
0002384 (connective tissue)
0000033 (head)
0000479 (tissue)
0001007 (digestive system)
0000344 (mucosa)
0004121 (ectoderm-derived structure)
0000064 (organ part)
0004119 (endoderm-derived structure)
0000062 (organ)
0004111 (anatomical conduit)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0004923 (organ component layer)
0000161 (orifice)
0001444 (subdivision of head)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003729 (mouth mucosa)
0010317 (germ layer / neural crest derived structure)
0001555 (digestive tract)
0001828 (gingiva)
0001004 (respiratory system)
0000153 (anterior region of body)
0007811 (craniocervical region)
0000165 (mouth)
0000166 (oral opening)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000057 (fibroblast sample)
0000001 (sample)
0000063 (human fibroblast of gingiva sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)

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