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{{f5samples
{{f5samples
|ancestors_in_anatomy_facet=UBERON:0000025,UBERON:0000055,UBERON:0000061,UBERON:0000119,UBERON:0000383,UBERON:0000465,UBERON:0000467,UBERON:0000468,UBERON:0000475,UBERON:0000477,UBERON:0000479,UBERON:0000480,UBERON:0000481,UBERON:0000483,UBERON:0000486,UBERON:0000490,UBERON:0000914,UBERON:0000915,UBERON:0000922,UBERON:0000923,UBERON:0000926,UBERON:0001009,UBERON:0001015,UBERON:0001062,UBERON:0001134,UBERON:0001533,UBERON:0001637,UBERON:0001981,UBERON:0002036,UBERON:0002049,UBERON:0002050,UBERON:0002204,UBERON:0002329,UBERON:0002385,UBERON:0002532,UBERON:0003059,UBERON:0003077,UBERON:0003081,UBERON:0003082,UBERON:0003104,UBERON:0003509,UBERON:0003834,UBERON:0003914,UBERON:0004111,UBERON:0004120,UBERON:0004290,UBERON:0004535,UBERON:0004537,UBERON:0004571,UBERON:0004572,UBERON:0004573,UBERON:0004872,UBERON:0005291,UBERON:0005423,UBERON:0006965,UBERON:0007500,UBERON:0007798,UBERON:0009142
|DRA_sample_Accession=CAGE@SAMD00005893
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000004,CL:0000012,CL:0000034,CL:0000048,CL:0000055,CL:0000056,CL:0000144,CL:0000183,CL:0000187,CL:0000192,CL:0000211,CL:0000220,CL:0000222,CL:0000255,CL:0000355,CL:0000359,CL:0000393,CL:0000514,CL:0000548,CL:0000680,CL:0000723,CL:0002321,CL:0002371,CL:0002595
|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005893
|accession_numbers=CAGE;DRX008503;DRR009375;DRZ000800;DRZ002185;DRZ012150;DRZ013535
|accession_numbers_RNASeq=sRNA-Seq;DRX037190;DRR041556;DRZ007198
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001637,UBERON:0002100,UBERON:0000483,UBERON:0000479,UBERON:0000055,UBERON:0004111,UBERON:0000475,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0003914,UBERON:0000025,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0009569,UBERON:0004573,UBERON:0003834,UBERON:0003509,UBERON:0007500,UBERON:0001981,UBERON:0002049,UBERON:0003513,UBERON:0010317,UBERON:0007798,UBERON:0001533,UBERON:0004535,UBERON:0004571,UBERON:0000915,UBERON:0004572,UBERON:0004537,UBERON:0001009
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002371,CL:0000393,CL:0000183,CL:0000187,CL:0000192,CL:0000211,CL:0000255,CL:0000359,CL:0002595
|ancestors_in_disease_facet=
|ancestors_in_disease_facet=
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000167,FF:0000175
|comment=
|comment=
|created_by=
|created_by=
|creation_date=
|creation_date=
|data_phase=2
|datafreeze_phase=2
|def=
|def=
|expression_enrichment_score=chr6:134210243..134210257,+!p1@TCF21!1.99!97.34!TCF21;;chr11:34642612..34642646,+!p1@EHF!1.95!89.01!EHF;;chr8:55370487..55370503,+!p1@SOX17!1.92!82.43!SOX17;;chr11:65686802..65686818,+!p6@DRAP1!1.53!55.68!DRAP1;;chr2:19558373..19558392,-!p1@OSR1!1.46!74.98!OSR1;;chr20:30433396..30433414,-!p1@FOXS1!1.38!23.24!FOXS1;;chr10:94449703..94449718,+!p1@HHEX!1.37!85.06!HHEX;;chr11:46299199..46299233,+!p1@CREB3L1!1.31!97.34!CREB3L1;;chr11:46299539..46299620,+!p2@CREB3L1!1.26!28.94!CREB3L1;;chr11:65686732..65686756,+!p2@DRAP1!1.20!62.26!DRAP1;;chr6:10412600..10412637,-!p1@TFAP2A!1.19!24.11!TFAP2A;;chr7:1577899..1577943,+!p3@MAFK!1.14!12.72!MAFK;;chr11:65687362..65687436,+!p3@DRAP1!1.13!56.56!DRAP1;;chr9:35732647..35732678,+!p2@CREB3!1.12!67.96!CREB3;;chr6:34204921..34204939,+!p3@HMGA1!1.07!323.58!HMGA1;;chr9:132427972..132428056,+!p1@PRRX2!1.05!13.59!PRRX2;;chr22:38598086..38598105,+!p1@MAFF!1.03!104.35!MAFF;;chr6:10415276..10415341,-!p2@TFAP2A!1.03!11.84!TFAP2A;;chr4:174450089..174450153,-!p2@HAND2!1.03!9.65!HAND2;;chr15:67458861..67458879,+!p17@SMAD3!1.03!9.65!SMAD3;;chr15:83953397..83953425,-!p1@BNC1!1.02!10.96!BNC1;;chr18:19749541..19749557,+!p1@GATA6!0.98!27.18!GATA6;;chr19:13134772..13134822,+!p2@NFIX!0.97!12.28!NFIX;;chr12:66218904..66218913,+!p11@HMGA2!0.97!8.33!HMGA2;;chr11:615570..615721,-!p2@IRF7!0.96!16.22!IRF7;;chr19:13136130..13136165,+!p6@NFIX!0.96!10.96!NFIX;;chr1:170632285..170632309,+!p1@PRRX1!0.96!9.21!PRRX1;;chr19:47523058..47523114,+!p1@NPAS1!0.95!7.89!NPAS1;;chr4:174451370..174451387,-!p1@HAND2!0.95!7.89!HAND2;;chr11:34642656..34642667,+!p2@EHF!0.95!7.89!EHF;;chr20:6748325..6748352,+!p1@BMP2!0.93!10.96!BMP2;;chr11:46299443..46299459,+!p4@CREB3L1!0.93!7.45!CREB3L1;;chr9:35732514..35732530,+!p5@CREB3!0.92!10.52!CREB3;;chr16:86544113..86544145,+!p1@FOXF1!0.92!9.21!FOXF1;;chr1:37940170..37940190,+!p1@ZC3H12A!0.90!90.32!ZC3H12A;;chr12:66218836..66218888,+!p1@HMGA2!0.90!67.52!HMGA2;;chr9:132427883..132427951,+!p2@PRRX2!0.90!7.02!PRRX2;;chr22:19748231..19748317,+!p1@TBX1!0.90!7.02!TBX1;;chr11:65687222..65687240,+!p7@DRAP1!0.89!8.77!DRAP1;;chr15:67458491..67458505,+!p18@SMAD3!0.88!6.58!SMAD3;;chr11:65687158..65687216,+!p4@DRAP1!0.87!38.58!DRAP1;;chr19:42636586..42636607,-!p1@POU2F2!0.87!18.41!POU2F2;;chr16:86600426..86600441,+!p1@FOXC2!0.86!16.22!FOXC2;;chr3:25470156..25470227,+!p2@RARB!0.85!6.14!RARB;;chr12:66218923..66218934,+!p14@HMGA2!0.85!6.14!HMGA2;;chr8:106330656..106330684,+!p1@ZFPM2!0.84!16.22!ZFPM2;;chr6:126240380..126240430,+!p2@NCOA7!0.83!15.78!NCOA7;;chr7:35293685..35293718,-!p1@TBX20!0.83!5.70!TBX20;;chr2:85981107..85981120,+!p3@ATOH8!0.83!5.70!ATOH8;;chr12:66218598..66218645,+!p2@HMGA2!0.82!27.62!HMGA2;;chr3:141087393..141087426,+!p3@ZBTB38!0.80!22.80!ZBTB38;;chr11:64764435..64764449,-!p1@BATF2!0.80!7.45!BATF2;;chrY:2803415..2803468,+!p1@ZFY!0.80!5.26!ZFY;;chr12:124873357..124873401,-!p1@NCOR2!0.79!65.33!NCOR2;;chr7:17338266..17338282,+!p1@AHR!0.79!60.94!AHR;;chr17:59477233..59477263,+!p1@TBX2!0.79!17.10!TBX2;;chr17:1959369..1959388,+!p2@HIC1!0.79!14.47!HIC1;;chr15:67418047..67418093,+!p4@SMAD3!0.78!6.58!SMAD3;;chr6:10412392..10412409,-!p4@TFAP2A!0.77!5.70!TFAP2A;;chr8:72756637..72756664,-!p3@MSC!0.77!5.70!MSC;;chr19:46801639..46801699,+!p1@HIF3A!0.77!4.82!HIF3A;;chr11:46333934..46333963,+!p5@CREB3L1!0.77!4.82!CREB3L1;;chr9:16705069..16705086,-!p3@BNC2!0.77!4.82!BNC2;;chr5:72744445..72744466,-!p2@FOXD1!0.76!8.33!FOXD1;;chr11:65667846..65667868,-!p1@FOSL1!0.74!131.97!FOSL1;;chr17:3571863..3571881,-!p1@TAX1BP3!0.73!350.32!TAX1BP3;;chr16:86600870..86600921,+!p2@FOXC2!0.73!4.38!FOXC2;;chrY:21906594..21906622,-!p1@KDM5D!0.73!4.38!KDM5D;;chr12:53614115..53614154,-!p1@RARG!0.72!25.43!RARG;;chr8:72756667..72756736,-!p2@MSC!0.72!7.02!MSC;;chr8:72756267..72756296,-!p4@MSC!0.72!6.58!MSC;;chr2:157189180..157189290,-!p1@NR4A2!0.71!24.11!NR4A2;;chr2:239756739..239756755,+!p2@TWIST2!0.71!7.45!TWIST2;;chr2:28618532..28618610,+!p4@FOSL2!0.71!7.45!FOSL2;;chr18:19749386..19749404,+!p2@GATA6!0.71!6.14!GATA6;;chr2:191878812..191878823,-!p2@STAT1!0.70!5.26!STAT1;;chr1:151032739..151032748,+!p6@MLLT11!0.70!5.26!MLLT11;;chr12:80085061..80085119,-!p6@PAWR!0.69!6.58!PAWR;;chr15:67418119..67418162,+!p5@SMAD3!0.69!4.38!SMAD3;;chr12:115122318..115122331,-!p2@TBX3!0.69!3.95!TBX3;;chr1:170633058..170633084,+!p5@PRRX1!0.69!3.95!PRRX1;;chr2:85981073..85981091,+!p5@ATOH8!0.69!3.95!ATOH8;;chr3:141087454..141087465,+!p19@ZBTB38!0.69!3.95!ZBTB38;;chr7:44143978..44143989,+!p2@AEBP1!0.68!7.45!AEBP1;;chr3:168864315..168864339,-!p2@MECOM!0.68!6.58!MECOM;;chr7:1577111..1577132,+!p4@MAFK!0.68!4.38!MAFK;;chr19:45252008..45252024,+!p2@BCL3!0.67!13.59!BCL3;;chr1:170633348..170633399,+!p2@PRRX1!0.67!5.26!PRRX1;;chr7:44143997..44144008,+!p3@AEBP1!0.67!4.82!AEBP1;;chr12:124873852..124873881,-!p3@NCOR2!0.66!24.55!NCOR2;;chr5:72744594..72744609,-!p1@FOXD1!0.66!18.85!FOXD1;;chr17:38498594..38498661,+!p2@RARA!0.66!13.59!RARA;;chr22:38598057..38598071,+!p3@MAFF!0.66!9.21!MAFF;;chr1:151032782..151032801,+!p4@MLLT11!0.66!7.89!MLLT11;;chr3:170076314..170076334,+!p2@SKIL!0.66!4.82!SKIL;;chr11:65686776..65686787,+!p9@DRAP1!0.66!4.38!DRAP1;;chr1:23885981..23886002,-!p1@ID3!0.65!713.36!ID3;;chr1:151032922..151032951,+!p2@MLLT11!0.65!6.14!MLLT11;;chr3:141121847..141121868,+!p5@ZBTB38!0.65!5.70!ZBTB38;;chr17:59477275..59477286,+!p3@TBX2!0.65!4.82!TBX2;;chr15:67418177..67418204,+!p9@SMAD3!0.65!3.51!SMAD3;;chr2:200325204..200325243,-!p7@SATB2!0.65!3.51!SATB2;;chr2:85981969..85982019,+!p6@ATOH8!0.65!3.51!ATOH8;;chr3:141087562..141087594,+!p12@ZBTB38!0.65!3.51!ZBTB38;;chr4:174451350..174451363,-!p3@HAND2!0.65!3.51!HAND2;;chr6:10412576..10412599,-!p5@TFAP2A!0.65!3.51!TFAP2A;;chr8:25902876..25902936,-!p1@EBF2!0.65!3.51!EBF2;;chr12:115122303..115122314,-!p6@TBX3!0.65!3.51!TBX3;;chr19:16435625..16435682,+!p1@KLF2!0.64!128.03!KLF2;;chr2:200322654..200322707,-!p2@SATB2!0.64!5.26!SATB2;;chr12:26277817..26277863,-!p2@BHLHE41!0.64!4.82!BHLHE41;;chr9:35732592..35732640,+!p1@CREB3!0.63!50.86!CREB3;;chr1:8934931..8934947,-!p4@ENO1!0.63!12.28!ENO1;;chr7:137686763..137686784,-!p5@CREB3L2!0.63!6.14!CREB3L2;;chr7:137686552..137686564,-!p9@CREB3L2!0.63!5.26!CREB3L2;;chr20:47894569..47894799,-!p1@ZNFX1!0.62!101.28!ZNFX1;;chr12:66218255..66218304,+!p3@HMGA2!0.62!9.65!HMGA2;;chr4:26322267..26322334,+!p3@RBPJ!0.62!8.77!RBPJ;;chr1:170632959..170632987,+!p4@PRRX1!0.62!3.51!PRRX1;;chr1:8938709..8938720,-!p3@ENO1!0.61!178.01!ENO1;;chr12:115121962..115121987,-!p1@TBX3!0.61!30.69!TBX3;;chr9:4300050..4300118,-!p1@GLIS3!0.61!23.68!GLIS3;;chr10:77161133..77161176,-!p3@ZNF503!0.61!7.45!ZNF503;;chr8:72756063..72756125,-!p1@MSC!0.61!7.02!MSC;;chr15:42749722..42749739,-!p2@ZFP106!0.61!6.14!ZFP106;;chr21:36260773..36260804,-!p7@RUNX1!0.61!4.38!RUNX1;;chr11:65687243..65687276,+!p8@DRAP1!0.61!4.38!DRAP1;;chr6:126240356..126240379,+!p7@NCOA7!0.61!3.95!NCOA7;;chr11:46299186..46299195,+!p3@CREB3L1!0.61!3.51!CREB3L1;;chr7:139762578..139762589,-!p2@PARP12!0.61!3.07!PARP12;;chr16:31076332..31076388,-!p3@ZNF668!0.61!3.07!ZNF668;;chr18:19749504..19749515,+!p5@GATA6!0.61!3.07!GATA6;;chr20:30433431..30433442,-!p2@FOXS1!0.61!3.07!FOXS1;;chr21:39870339..39870443,-!p1@ERG!0.61!3.07!ERG;;chr20:42543441..42543497,+!p1@TOX2!0.60!15.78!TOX2;;chr6:35310395..35310410,+!p2@PPARD!0.60!13.59!PPARD;;chr19:52074502..52074587,+!p1@ZNF175!0.60!12.72!ZNF175;;chr11:65687882..65687902,+!p10@DRAP1!0.60!4.38!DRAP1;;chr1:170633262..170633285,+!p3@PRRX1!0.60!3.51!PRRX1;;chr6:34204973..34204990,+!p4@HMGA1!0.59!46.48!HMGA1;;chr2:85981222..85981259,+!p2@ATOH8!0.59!5.26!ATOH8;;chr3:101568349..101568365,+!p1@NFKBIZ!0.58!180.64!NFKBIZ;;chr7:44143925..44143970,+!p1@AEBP1!0.58!77.61!AEBP1;;chr22:38597987..38598021,+!p2@MAFF!0.58!20.61!MAFF;;chr2:231280954..231280965,+!p2@SP100!0.58!5.70!SP100;;chr12:66218212..66218244,+!p5@HMGA2!0.58!4.38!HMGA2;;chr2:85980919..85980942,+!p4@ATOH8!0.58!3.07!ATOH8;;chr19:45251943..45252006,+!p1@BCL3!0.57!89.44!BCL3;;chr14:24630902..24630948,+!p2@IRF9!0.57!3.51!IRF9;;chr2:191878874..191878938,-!p1@STAT1!0.56!181.08!STAT1;;chr2:28616337..28616355,+!p2@FOSL2!0.56!58.75!FOSL2;;chr1:151032860..151032918,+!p1@MLLT11!0.56!38.58!MLLT11;;chr11:615942..615957,-!p1@IRF7!0.56!31.13!IRF7;;chr17:38256822..38256851,-!p1@NR1D1!0.56!25.87!NR1D1;;chr10:94449675..94449694,+!p2@HHEX!0.56!8.33!HHEX;;chr2:85980951..85981004,+!p1@ATOH8!0.56!4.82!ATOH8;;chr18:53068911..53068935,-!p4@TCF4!0.56!3.07!TCF4;;chr15:67458836..67458859,+!p22@SMAD3!0.56!2.63!SMAD3;;chr15:67459116..67459123,+!p23@SMAD3!0.56!2.63!SMAD3;;chr16:86601052..86601066,+!p4@FOXC2!0.56!2.63!FOXC2;;chr16:86612149..86612161,+!p2@FOXL1!0.56!2.63!FOXL1;;chr19:13135582..13135600,+!p3@NFIX!0.56!2.63!NFIX;;chr1:170632250..170632277,+!p7@PRRX1!0.56!2.63!PRRX1;;chr21:38071430..38071456,+!p1@SIM2!0.56!2.63!SIM2;;chr6:10415263..10415274,-!p8@TFAP2A!0.56!2.63!TFAP2A;;chr7:1577952..1577963,+!p8@MAFK!0.56!2.63!MAFK;;chr2:172967276..172967296,-!p3@DLX2!0.56!2.63!DLX2;;chr4:103423079..103423112,+!p4@NFKB1!0.56!2.63!NFKB1;;chr14:62162285..62162296,+!p3@HIF1A!0.55!16.22!HIF1A;;chr5:321810..321877,+!p1@AHRR!0.55!9.65!AHRR;;chr8:145159846..145159889,+!p6@MAF1!0.55!3.95!MAF1;;chr3:168865194..168865245,-!p3@MECOM!0.55!3.51!MECOM;;chr7:139762641..139762768,-!p1@PARP12!0.54!42.53!PARP12;;chr7:17338324..17338341,+!p3@AHR!0.54!10.08!AHR;;chr2:239756671..239756732,+!p1@TWIST2!0.54!9.65!TWIST2;;chr1:156470515..156470542,-!p2@MEF2D!0.53!15.78!MEF2D;;chr6:85473156..85473210,-!p2@TBX18!0.53!3.07!TBX18;;chr4:4861385..4861398,+!p1@MSX1!0.52!8.33!MSX1;;chr12:27485762..27485776,+!p3@ARNTL2!0.52!7.45!ARNTL2;;chr11:65430554..65430579,-!p3@RELA!0.52!7.02!RELA;;chr17:7492684..7492778,-!p2@SOX15!0.52!5.70!SOX15;;chr10:63809106..63809127,+!p1@ARID5B!0.51!39.90!ARID5B;;chr17:1958388..1958404,+!p1@HIC1!0.51!18.41!HIC1;;chr20:48599506..48599526,+!p1@SNAI1!0.51!18.41!SNAI1;;chr17:46621937..46621966,-!p2@HOXB2!0.51!7.45!HOXB2;;chr6:126240442..126240459,+!p4@NCOA7!0.51!3.07!NCOA7;;chr8:106330696..106330719,+!p2@ZFPM2!0.51!3.07!ZFPM2;;chr19:13106214..13106382,+!p1@NFIX!0.50!66.64!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|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000056;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000187;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000192;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000359;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002595;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001637;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001981;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002385;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0003513;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0004573;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0007798
|ffid_belonging_in_development=CL:0000355,CL:0000222,CL:0000514
|fonse_cell_line=
|fonse_cell_line=
|fonse_cell_line_closure=
|fonse_cell_line_closure=
Line 34: Line 44:
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Subclavian%2520Artery%252c%2520donor3.CNhs12048.11438-118H7.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Subclavian%2520Artery%252c%2520donor3.CNhs12048.11438-118H7.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Subclavian%2520Artery%252c%2520donor3.CNhs12048.11438-118H7.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Subclavian%2520Artery%252c%2520donor3.CNhs12048.11438-118H7.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Subclavian%2520Artery%252c%2520donor3.CNhs12048.11438-118H7.hg38.nobarcode.ctss.bed.gz
|id=FF:11438-118H7
|id=FF:11438-118H7
|is_a=EFO:0002091;;FF:0000002;;FF:0000175;;FF:0000210
|is_a=EFO:0002091;;FF:0000175
|is_obsolete=
|library_id=CNhs12048
|library_id_phase_based=2:CNhs12048
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11438
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10012.TAGCTT.11438
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11438
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10012.TAGCTT.11438
|name=Smooth Muscle Cells - Subclavian Artery, donor3
|name=Smooth Muscle Cells - Subclavian Artery, donor3
|namespace=FANTOM5
|namespace=FANTOM5
Line 41: Line 65:
|profile_cagescan=,,,
|profile_cagescan=,,,
|profile_hcage=CNhs12048,LSID838,release011,COMPLETED
|profile_hcage=CNhs12048,LSID838,release011,COMPLETED
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|refex=http://refex.dbcls.jp/genelist.php?lang
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|rna_box=118
|rna_box=118
|rna_catalog_number=CA3010-R10a
|rna_catalog_number=CA3010-R10a
Line 55: Line 82:
|rna_tube_id=118H7
|rna_tube_id=118H7
|rna_weight_ug=10
|rna_weight_ug=10
|rnaseq_library_id=SRhi10012.TAGCTT
|sample_age=59
|sample_age=59
|sample_category=primary cells
|sample_cell_catalog=N/A
|sample_cell_catalog=N/A
|sample_cell_line=
|sample_cell_line=
Line 68: Line 97:
|sample_ethnicity=C
|sample_ethnicity=C
|sample_experimental_condition=
|sample_experimental_condition=
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;3.41778250266707e-225!GO:0005737;cytoplasm;4.158536781155e-195!GO:0044444;cytoplasmic part;6.70217066152822e-145!GO:0043226;organelle;1.02834546148579e-139!GO:0043229;intracellular organelle;2.65432043172324e-139!GO:0043231;intracellular membrane-bound organelle;1.5076797305001e-134!GO:0043227;membrane-bound organelle;2.01663567345249e-134!GO:0044422;organelle part;3.72106332483307e-109!GO:0044446;intracellular organelle part;1.12891750572435e-107!GO:0005515;protein binding;2.92549075452247e-79!GO:0032991;macromolecular complex;1.54562375837366e-75!GO:0030529;ribonucleoprotein complex;6.42429065370354e-69!GO:0005739;mitochondrion;6.80497085942674e-63!GO:0044238;primary metabolic process;9.40346018743918e-61!GO:0044237;cellular metabolic process;8.38029846254838e-60!GO:0031090;organelle membrane;2.14818101770312e-57!GO:0043170;macromolecule metabolic process;5.81537615284791e-53!GO:0043233;organelle lumen;8.4925680820684e-53!GO:0031974;membrane-enclosed lumen;8.4925680820684e-53!GO:0019538;protein metabolic process;8.4925680820684e-53!GO:0003723;RNA binding;4.17209082807571e-51!GO:0006412;translation;3.92426691057498e-48!GO:0005840;ribosome;4.57754059983403e-48!GO:0044260;cellular macromolecule metabolic process;6.93944482952373e-47!GO:0044267;cellular protein metabolic process;4.38132134133746e-46!GO:0044429;mitochondrial part;1.38538205068838e-43!GO:0044428;nuclear part;2.4111120994217e-43!GO:0003735;structural constituent of ribosome;4.94184095624094e-43!GO:0009058;biosynthetic process;6.43962850398974e-43!GO:0015031;protein transport;6.67336121025394e-43!GO:0005829;cytosol;7.2790515760342e-42!GO:0033036;macromolecule localization;1.43945712353658e-40!GO:0045184;establishment of protein localization;3.7782471458998e-40!GO:0009059;macromolecule biosynthetic process;3.78807877033521e-40!GO:0044249;cellular biosynthetic process;1.72492619024779e-39!GO:0008104;protein localization;1.30394063073973e-38!GO:0043234;protein complex;7.02734534674732e-38!GO:0033279;ribosomal subunit;1.05405940269554e-37!GO:0031967;organelle envelope;1.49865267572048e-37!GO:0031975;envelope;3.52990308929128e-37!GO:0016043;cellular component organization and biogenesis;3.52990308929128e-37!GO:0046907;intracellular transport;3.32563825128226e-32!GO:0005634;nucleus;4.92919681124354e-32!GO:0005740;mitochondrial envelope;2.0331039296372e-30!GO:0006396;RNA processing;2.00632669238341e-29!GO:0031966;mitochondrial membrane;7.21326676032865e-29!GO:0005830;cytosolic ribosome (sensu Eukaryota);7.81887870345118e-29!GO:0006886;intracellular protein transport;2.65397021630268e-28!GO:0031981;nuclear lumen;3.03289651887666e-27!GO:0005783;endoplasmic reticulum;3.63865582408941e-27!GO:0019866;organelle inner membrane;3.55469399383394e-26!GO:0005743;mitochondrial inner membrane;3.81949090258177e-25!GO:0012505;endomembrane system;4.83460738930943e-24!GO:0044445;cytosolic part;5.01088285950577e-24!GO:0065003;macromolecular complex assembly;1.22498393834299e-23!GO:0016071;mRNA metabolic process;1.60188599398321e-23!GO:0006119;oxidative phosphorylation;5.13903753295705e-23!GO:0022613;ribonucleoprotein complex biogenesis and assembly;3.7540533859244e-22!GO:0008380;RNA splicing;5.42812566445882e-22!GO:0022607;cellular component assembly;4.94258360658773e-21!GO:0051649;establishment of cellular localization;9.22316861104311e-21!GO:0043283;biopolymer metabolic process;9.98371350516353e-21!GO:0044432;endoplasmic reticulum part;1.25816054754579e-20!GO:0051641;cellular localization;1.43421173876545e-20!GO:0005794;Golgi apparatus;1.55187164793113e-20!GO:0006397;mRNA processing;4.60282684774344e-20!GO:0044455;mitochondrial membrane part;6.89656236342224e-20!GO:0015934;large ribosomal subunit;7.94653633635367e-20!GO:0010467;gene expression;9.86907397602866e-20!GO:0006457;protein folding;1.28091470650787e-19!GO:0015935;small ribosomal subunit;7.6380446109512e-19!GO:0043228;non-membrane-bound organelle;1.4552650702767e-18!GO:0043232;intracellular non-membrane-bound organelle;1.4552650702767e-18!GO:0006996;organelle organization and biogenesis;1.47019861480004e-18!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;3.79251996063057e-18!GO:0016462;pyrophosphatase activity;3.88893631353602e-18!GO:0016817;hydrolase activity, acting on acid anhydrides;5.93548282223749e-18!GO:0017111;nucleoside-triphosphatase activity;7.71824964677567e-18!GO:0005746;mitochondrial respiratory chain;1.71192584704e-17!GO:0048770;pigment granule;2.02485142904531e-17!GO:0042470;melanosome;2.02485142904531e-17!GO:0031980;mitochondrial lumen;1.02185095534465e-16!GO:0005759;mitochondrial matrix;1.02185095534465e-16!GO:0000502;proteasome complex (sensu Eukaryota);5.02221853321128e-16!GO:0000166;nucleotide binding;9.70583434558537e-16!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;1.08658760689075e-15!GO:0005654;nucleoplasm;1.09805085103939e-15!GO:0006512;ubiquitin cycle;1.98917180122964e-15!GO:0016192;vesicle-mediated transport;2.36473541932265e-15!GO:0006605;protein targeting;2.37945184581317e-15!GO:0016874;ligase activity;2.61225491141895e-15!GO:0042175;nuclear envelope-endoplasmic reticulum network;2.88823422046198e-15!GO:0005681;spliceosome;3.02328189774354e-15!GO:0050136;NADH dehydrogenase (quinone) activity;3.03929346604211e-15!GO:0003954;NADH dehydrogenase activity;3.03929346604211e-15!GO:0008137;NADH dehydrogenase (ubiquinone) activity;3.03929346604211e-15!GO:0048193;Golgi vesicle transport;4.35078591281957e-15!GO:0051186;cofactor metabolic process;5.24152470343653e-15!GO:0044265;cellular macromolecule catabolic process;9.55006913799577e-15!GO:0005789;endoplasmic reticulum membrane;1.12334140531423e-14!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);1.16914645909693e-14!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);2.22160399622034e-14!GO:0022618;protein-RNA complex assembly;2.70412808781103e-14!GO:0008134;transcription factor binding;2.76258944035025e-14!GO:0043285;biopolymer catabolic process;2.97362667145366e-14!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;3.03732539429825e-14!GO:0051603;proteolysis involved in cellular protein catabolic process;3.66412294191478e-14!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;3.66412294191478e-14!GO:0051082;unfolded protein binding;6.55135245456926e-14!GO:0019941;modification-dependent protein catabolic process;6.68997118315647e-14!GO:0043632;modification-dependent macromolecule catabolic process;6.68997118315647e-14!GO:0009057;macromolecule catabolic process;8.55356883486843e-14!GO:0044257;cellular protein catabolic process;8.80516953356838e-14!GO:0006511;ubiquitin-dependent protein catabolic process;1.63624987120338e-13!GO:0030964;NADH dehydrogenase complex (quinone);1.72792343950017e-13!GO:0045271;respiratory chain complex I;1.72792343950017e-13!GO:0005747;mitochondrial respiratory chain complex I;1.72792343950017e-13!GO:0044451;nucleoplasm part;1.82983791130132e-13!GO:0009055;electron carrier activity;1.95645486794823e-13!GO:0012501;programmed cell death;1.98522554137868e-13!GO:0042775;organelle ATP synthesis coupled electron transport;2.56251123553711e-13!GO:0042773;ATP synthesis coupled electron transport;2.56251123553711e-13!GO:0044248;cellular catabolic process;3.15441182887851e-13!GO:0006915;apoptosis;4.08234750040887e-13!GO:0030163;protein catabolic process;5.75804525724364e-13!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;6.14625531753466e-13!GO:0043412;biopolymer modification;6.88279764080235e-13!GO:0008135;translation factor activity, nucleic acid binding;9.29408380131095e-13!GO:0005730;nucleolus;1.06473549214672e-12!GO:0005761;mitochondrial ribosome;1.52741443273893e-12!GO:0000313;organellar ribosome;1.52741443273893e-12!GO:0005793;ER-Golgi intermediate compartment;3.31130283895575e-12!GO:0017076;purine nucleotide binding;4.16042195856245e-12!GO:0006464;protein modification process;4.25207861348505e-12!GO:0032553;ribonucleotide binding;5.16100621345209e-12!GO:0032555;purine ribonucleotide binding;5.16100621345209e-12!GO:0008219;cell death;5.92305441113208e-12!GO:0016265;death;5.92305441113208e-12!GO:0006732;coenzyme metabolic process;6.23105564446635e-12!GO:0048523;negative regulation of cellular process;1.69797773510166e-11!GO:0009259;ribonucleotide metabolic process;5.52907385948686e-11!GO:0016491;oxidoreductase activity;9.10657894579057e-11!GO:0006163;purine nucleotide metabolic process;1.31574929056953e-10!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.52660508206893e-10!GO:0009150;purine ribonucleotide metabolic process;2.01083787308317e-10!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;3.15511525563387e-10!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;3.7969857994583e-10!GO:0048519;negative regulation of biological process;4.3873619522067e-10!GO:0006164;purine nucleotide biosynthetic process;5.41779742568586e-10!GO:0009260;ribonucleotide biosynthetic process;6.33350359435843e-10!GO:0009152;purine ribonucleotide biosynthetic process;7.90012029421203e-10!GO:0043067;regulation of programmed cell death;8.85468184727226e-10!GO:0043687;post-translational protein modification;1.02827267390249e-09!GO:0003743;translation initiation factor activity;1.09477350146376e-09!GO:0007249;I-kappaB kinase/NF-kappaB cascade;1.09626484979743e-09!GO:0030120;vesicle coat;1.1055469610529e-09!GO:0030662;coated vesicle membrane;1.1055469610529e-09!GO:0042981;regulation of apoptosis;1.10687335541808e-09!GO:0008639;small protein conjugating enzyme activity;1.15261932333678e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.24302877342741e-09!GO:0006413;translational initiation;1.30638358713554e-09!GO:0009199;ribonucleoside triphosphate metabolic process;1.5429463650168e-09!GO:0004842;ubiquitin-protein ligase activity;1.99859037793166e-09!GO:0003712;transcription cofactor activity;2.07492072278748e-09!GO:0044431;Golgi apparatus part;2.1695891102107e-09!GO:0019787;small conjugating protein ligase activity;2.71141190914285e-09!GO:0009142;nucleoside triphosphate biosynthetic process;2.90891640123499e-09!GO:0009201;ribonucleoside triphosphate biosynthetic process;2.90891640123499e-09!GO:0043069;negative regulation of programmed cell death;3.19028904558121e-09!GO:0009205;purine ribonucleoside triphosphate metabolic process;3.41834566952214e-09!GO:0009144;purine nucleoside triphosphate metabolic process;3.41834566952214e-09!GO:0003924;GTPase activity;3.42202746169624e-09!GO:0009141;nucleoside triphosphate metabolic process;3.57958793135706e-09!GO:0006913;nucleocytoplasmic transport;4.08217624712792e-09!GO:0005524;ATP binding;4.65571700091395e-09!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;4.8329472308859e-09!GO:0006916;anti-apoptosis;5.01001277282969e-09!GO:0015986;ATP synthesis coupled proton transport;5.23051841819358e-09!GO:0015985;energy coupled proton transport, down electrochemical gradient;5.23051841819358e-09!GO:0043066;negative regulation of apoptosis;6.0057136035609e-09!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;6.48476325017336e-09!GO:0009145;purine nucleoside triphosphate biosynthetic process;6.48476325017336e-09!GO:0005768;endosome;7.77530876317779e-09!GO:0008565;protein transporter activity;8.07472919237611e-09!GO:0000398;nuclear mRNA splicing, via spliceosome;8.07472919237611e-09!GO:0000375;RNA splicing, via transesterification reactions;8.07472919237611e-09!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;8.07472919237611e-09!GO:0006446;regulation of translational initiation;8.78458124475825e-09!GO:0051169;nuclear transport;8.80807508678534e-09!GO:0032559;adenyl ribonucleotide binding;9.58146694787358e-09!GO:0030554;adenyl nucleotide binding;9.87798591698567e-09!GO:0006888;ER to Golgi vesicle-mediated transport;1.02064020629109e-08!GO:0042254;ribosome biogenesis and assembly;1.09816021429053e-08!GO:0016879;ligase activity, forming carbon-nitrogen bonds;1.23112357304657e-08!GO:0005635;nuclear envelope;1.66972475338215e-08!GO:0017038;protein import;1.71765674952002e-08!GO:0006259;DNA metabolic process;2.27539537492317e-08!GO:0006461;protein complex assembly;2.3711354985175e-08!GO:0031965;nuclear membrane;2.43801597295049e-08!GO:0048475;coated membrane;2.48679764145143e-08!GO:0030117;membrane coat;2.48679764145143e-08!GO:0016881;acid-amino acid ligase activity;2.71353137541277e-08!GO:0009056;catabolic process;3.02966170331313e-08!GO:0051246;regulation of protein metabolic process;3.10438879506884e-08!GO:0019829;cation-transporting ATPase activity;3.14958839014038e-08!GO:0005788;endoplasmic reticulum lumen;3.4509824466562e-08!GO:0051188;cofactor biosynthetic process;4.8663642751933e-08!GO:0046034;ATP metabolic process;5.42861717975268e-08!GO:0009060;aerobic respiration;6.15795952000145e-08!GO:0016887;ATPase activity;6.43702242841954e-08!GO:0009117;nucleotide metabolic process;6.65462544285437e-08!GO:0031988;membrane-bound vesicle;8.36525825783677e-08!GO:0044453;nuclear membrane part;8.55718370061677e-08!GO:0006091;generation of precursor metabolites and energy;8.76537718958821e-08!GO:0006754;ATP biosynthetic process;8.80409402835586e-08!GO:0006753;nucleoside phosphate metabolic process;8.80409402835586e-08!GO:0042623;ATPase activity, coupled;8.80409402835586e-08!GO:0016023;cytoplasmic membrane-bound vesicle;8.85747553825952e-08!GO:0015078;hydrogen ion transmembrane transporter activity;1.81274292660596e-07!GO:0005773;vacuole;2.24965634039437e-07!GO:0016604;nuclear body;2.46362883269764e-07!GO:0048522;positive regulation of cellular process;3.08491028762424e-07!GO:0045333;cellular respiration;3.26319829345202e-07!GO:0005798;Golgi-associated vesicle;3.85698579181709e-07!GO:0000139;Golgi membrane;4.12338656176839e-07!GO:0005839;proteasome core complex (sensu Eukaryota);4.23731589774845e-07!GO:0007049;cell cycle;5.52365507363932e-07!GO:0031982;vesicle;6.43322591893926e-07!GO:0006399;tRNA metabolic process;7.80519222272704e-07!GO:0031410;cytoplasmic vesicle;8.51503379104492e-07!GO:0016469;proton-transporting two-sector ATPase complex;9.24908662206454e-07!GO:0044440;endosomal part;1.70820045146514e-06!GO:0010008;endosome membrane;1.70820045146514e-06!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;1.9429500172918e-06!GO:0004812;aminoacyl-tRNA ligase activity;1.9429500172918e-06!GO:0016875;ligase activity, forming carbon-oxygen bonds;1.9429500172918e-06!GO:0009108;coenzyme biosynthetic process;2.10428339513874e-06!GO:0006099;tricarboxylic acid cycle;2.48938956229194e-06!GO:0046356;acetyl-CoA catabolic process;2.48938956229194e-06!GO:0007243;protein kinase cascade;2.50383553587678e-06!GO:0001558;regulation of cell growth;2.74804772119703e-06!GO:0051187;cofactor catabolic process;2.76899589224052e-06!GO:0045259;proton-transporting ATP synthase complex;2.92897196362463e-06!GO:0000323;lytic vacuole;2.92897196362463e-06!GO:0005764;lysosome;2.92897196362463e-06!GO:0030532;small nuclear ribonucleoprotein complex;2.95381170945614e-06!GO:0008361;regulation of cell size;3.47387720648897e-06!GO:0004298;threonine endopeptidase activity;3.58993772051593e-06!GO:0016049;cell growth;3.61148227563024e-06!GO:0043038;amino acid activation;3.95004155963278e-06!GO:0006418;tRNA aminoacylation for protein translation;3.95004155963278e-06!GO:0043039;tRNA aminoacylation;3.95004155963278e-06!GO:0016787;hydrolase activity;4.23366168594363e-06!GO:0005643;nuclear pore;4.38013917872951e-06!GO:0003714;transcription corepressor activity;4.39634662343488e-06!GO:0005770;late endosome;4.83300124011353e-06!GO:0065002;intracellular protein transport across a membrane;5.12076565363738e-06!GO:0031252;leading edge;5.49970403184834e-06!GO:0008026;ATP-dependent helicase activity;5.55595731587612e-06!GO:0007005;mitochondrion organization and biogenesis;5.8447186722578e-06!GO:0009109;coenzyme catabolic process;6.67316389308975e-06!GO:0051789;response to protein stimulus;6.67427686922922e-06!GO:0006986;response to unfolded protein;6.67427686922922e-06!GO:0031968;organelle outer membrane;8.20736325173222e-06!GO:0006084;acetyl-CoA metabolic process;8.71396427906099e-06!GO:0005525;GTP binding;8.93326486960509e-06!GO:0006752;group transfer coenzyme metabolic process;9.3920461860391e-06!GO:0003676;nucleic acid binding;9.51623436666748e-06!GO:0051170;nuclear import;1.04896577777372e-05!GO:0030036;actin cytoskeleton organization and biogenesis;1.05014069009525e-05!GO:0019867;outer membrane;1.12554403826331e-05!GO:0016740;transferase activity;1.15494012381486e-05!GO:0006606;protein import into nucleus;1.30787892418713e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;1.3828165710864e-05!GO:0006793;phosphorus metabolic process;1.70873595652993e-05!GO:0006796;phosphate metabolic process;1.70873595652993e-05!GO:0008654;phospholipid biosynthetic process;1.77188755559269e-05!GO:0016310;phosphorylation;1.94745275049911e-05!GO:0004386;helicase activity;1.9905876072222e-05!GO:0030133;transport vesicle;2.28933315172301e-05!GO:0045454;cell redox homeostasis;2.32166202033247e-05!GO:0006364;rRNA processing;2.40063308476306e-05!GO:0044262;cellular carbohydrate metabolic process;2.43000426126138e-05!GO:0005048;signal sequence binding;2.80294089629701e-05!GO:0005905;coated pit;2.87663491586781e-05!GO:0016607;nuclear speck;2.88072438898588e-05!GO:0005762;mitochondrial large ribosomal subunit;3.04578787047911e-05!GO:0000315;organellar large ribosomal subunit;3.04578787047911e-05!GO:0050794;regulation of cellular process;3.05194398484657e-05!GO:0016072;rRNA metabolic process;3.06300462451579e-05!GO:0046930;pore complex;3.26299306892074e-05!GO:0016853;isomerase activity;3.67473789780549e-05!GO:0005741;mitochondrial outer membrane;3.89370362244232e-05!GO:0006613;cotranslational protein targeting to membrane;4.00040539354579e-05!GO:0051726;regulation of cell cycle;4.00040539354579e-05!GO:0016567;protein ubiquitination;4.40728800975118e-05!GO:0006366;transcription from RNA polymerase II promoter;4.63660714647033e-05!GO:0032446;protein modification by small protein conjugation;4.786151894442e-05!GO:0032561;guanyl ribonucleotide binding;4.83777649446392e-05!GO:0019001;guanyl nucleotide binding;4.83777649446392e-05!GO:0016779;nucleotidyltransferase activity;5.34489887498898e-05!GO:0016564;transcription repressor activity;5.3906515341655e-05!GO:0000074;regulation of progression through cell cycle;5.42228325285396e-05!GO:0009967;positive regulation of signal transduction;5.97631887037977e-05!GO:0030867;rough endoplasmic reticulum membrane;6.09038436145632e-05!GO:0000151;ubiquitin ligase complex;6.10009045775085e-05!GO:0019843;rRNA binding;6.3225264319554e-05!GO:0022402;cell cycle process;6.44507594978289e-05!GO:0048518;positive regulation of biological process;7.57668117487846e-05!GO:0033116;ER-Golgi intermediate compartment membrane;7.63831816330697e-05!GO:0000245;spliceosome assembly;9.39011237328615e-05!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000100303374878438!GO:0040008;regulation of growth;0.000100445420551667!GO:0009165;nucleotide biosynthetic process;0.000109851695104038!GO:0030029;actin filament-based process;0.000109867751447682!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.000111546835643075!GO:0015399;primary active transmembrane transporter activity;0.000111546835643075!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;0.000131079353058008!GO:0016070;RNA metabolic process;0.000132578427921739!GO:0005667;transcription factor complex;0.000157471568171226!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.000173084204573115!GO:0006612;protein targeting to membrane;0.000174300587064271!GO:0015980;energy derivation by oxidation of organic compounds;0.000175231537156361!GO:0043623;cellular protein complex assembly;0.000199151129189896!GO:0030659;cytoplasmic vesicle membrane;0.00021570777105848!GO:0006325;establishment and/or maintenance of chromatin architecture;0.00021570777105848!GO:0031324;negative regulation of cellular metabolic process;0.000220607222435017!GO:0030663;COPI coated vesicle membrane;0.000222437146151331!GO:0030126;COPI vesicle coat;0.000222437146151331!GO:0006414;translational elongation;0.000254362411833281!GO:0003713;transcription coactivator activity;0.000286566135945878!GO:0003724;RNA helicase activity;0.000304786506672615!GO:0030658;transport vesicle membrane;0.000316305450240623!GO:0005769;early endosome;0.000321862737500004!GO:0006118;electron transport;0.000327617789808843!GO:0046474;glycerophospholipid biosynthetic process;0.000360653799903527!GO:0016859;cis-trans isomerase activity;0.000383138599447747!GO:0065009;regulation of a molecular function;0.000397409131733177!GO:0043284;biopolymer biosynthetic process;0.00040706051955926!GO:0006974;response to DNA damage stimulus;0.000417201415182402!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.000449833173406453!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000452536789475055!GO:0005885;Arp2/3 protein complex;0.000461929419969433!GO:0016044;membrane organization and biogenesis;0.00049856415435781!GO:0030137;COPI-coated vesicle;0.000508447888612746!GO:0044433;cytoplasmic vesicle part;0.000516418022878586!GO:0050789;regulation of biological process;0.000532913604250865!GO:0006323;DNA packaging;0.000541745413901038!GO:0030176;integral to endoplasmic reticulum membrane;0.000552114044329388!GO:0050657;nucleic acid transport;0.000556003932279632!GO:0051236;establishment of RNA localization;0.000556003932279632!GO:0050658;RNA transport;0.000556003932279632!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.000585604434135302!GO:0045045;secretory pathway;0.000592441775290469!GO:0006403;RNA localization;0.000595126740999292!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000595847349120692!GO:0016563;transcription activator activity;0.000614074931852858!GO:0065004;protein-DNA complex assembly;0.000633020160306166!GO:0045786;negative regulation of progression through cell cycle;0.000714562511393866!GO:0043492;ATPase activity, coupled to movement of substances;0.000800873165719276!GO:0004576;oligosaccharyl transferase activity;0.000816420357104517!GO:0008092;cytoskeletal protein binding;0.000834012354479048!GO:0009892;negative regulation of metabolic process;0.000844605654450725!GO:0000278;mitotic cell cycle;0.000844745209065881!GO:0042802;identical protein binding;0.000851828603932892!GO:0048468;cell development;0.000859174657729088!GO:0019899;enzyme binding;0.000944108902862715!GO:0003697;single-stranded DNA binding;0.000953988151638709!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.000957444815556559!GO:0051920;peroxiredoxin activity;0.00105269946332413!GO:0008250;oligosaccharyl transferase complex;0.00105446215870883!GO:0012506;vesicle membrane;0.0010625220184036!GO:0000314;organellar small ribosomal subunit;0.0010625220184036!GO:0005763;mitochondrial small ribosomal subunit;0.0010625220184036!GO:0030660;Golgi-associated vesicle membrane;0.00111356805672093!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.0012314025465427!GO:0005791;rough endoplasmic reticulum;0.00125499610366967!GO:0051427;hormone receptor binding;0.00128349905904524!GO:0008047;enzyme activator activity;0.00134945764756599!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.00146362718796272!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00149033190160357!GO:0048471;perinuclear region of cytoplasm;0.00155689497692339!GO:0007264;small GTPase mediated signal transduction;0.00160415667744132!GO:0043681;protein import into mitochondrion;0.00163673371470887!GO:0030132;clathrin coat of coated pit;0.00171996638626283!GO:0030118;clathrin coat;0.00172321672964783!GO:0043021;ribonucleoprotein binding;0.00188901319859223!GO:0008632;apoptotic program;0.00190500520454956!GO:0022890;inorganic cation transmembrane transporter activity;0.00206871476445235!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00217063666104315!GO:0015992;proton transport;0.00222034773809577!GO:0046489;phosphoinositide biosynthetic process;0.00229123675666915!GO:0030134;ER to Golgi transport vesicle;0.00229992358647724!GO:0006891;intra-Golgi vesicle-mediated transport;0.00237283619244303!GO:0035257;nuclear hormone receptor binding;0.00237497769489468!GO:0018196;peptidyl-asparagine modification;0.00237497769489468!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00237497769489468!GO:0045792;negative regulation of cell size;0.0025611090075315!GO:0030308;negative regulation of cell growth;0.00260201355808277!GO:0006626;protein targeting to mitochondrion;0.00271764090360257!GO:0006818;hydrogen transport;0.00273249734351256!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00273321561973737!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00273321561973737!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00273321561973737!GO:0046467;membrane lipid biosynthetic process;0.00281299565267537!GO:0032940;secretion by cell;0.00288780904944882!GO:0006509;membrane protein ectodomain proteolysis;0.00309480213690101!GO:0033619;membrane protein proteolysis;0.00309480213690101!GO:0030127;COPII vesicle coat;0.00318745511442465!GO:0012507;ER to Golgi transport vesicle membrane;0.00318745511442465!GO:0030125;clathrin vesicle coat;0.00335973621134324!GO:0030665;clathrin coated vesicle membrane;0.00335973621134324!GO:0043566;structure-specific DNA binding;0.00343486472903763!GO:0031072;heat shock protein binding;0.0034620004007357!GO:0051540;metal cluster binding;0.00366224529873573!GO:0051536;iron-sulfur cluster binding;0.00366224529873573!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.0037131867706288!GO:0004177;aminopeptidase activity;0.00374116450741762!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00379853174602036!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00382760098021028!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00382760098021028!GO:0048487;beta-tubulin binding;0.00390035653644575!GO:0009719;response to endogenous stimulus;0.00391070001754716!GO:0006281;DNA repair;0.00392006435004221!GO:0006950;response to stress;0.00394179574066633!GO:0016197;endosome transport;0.00397904866143406!GO:0003899;DNA-directed RNA polymerase activity;0.00400308656003057!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.00426715389995055!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00428887617231544!GO:0008139;nuclear localization sequence binding;0.00434314782844663!GO:0051028;mRNA transport;0.0044070947741754!GO:0007006;mitochondrial membrane organization and biogenesis;0.00445700406561187!GO:0006333;chromatin assembly or disassembly;0.00447087787236288!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.00448373164172513!GO:0008243;plasminogen activator activity;0.00458140153953077!GO:0051168;nuclear export;0.00465546192666607!GO:0030027;lamellipodium;0.00489848209599842!GO:0017166;vinculin binding;0.00504604998644965!GO:0007010;cytoskeleton organization and biogenesis;0.00506812356534348!GO:0016568;chromatin modification;0.00513240620484117!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00518586614031032!GO:0008186;RNA-dependent ATPase activity;0.00529366721710156!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.00530556353258017!GO:0051276;chromosome organization and biogenesis;0.00531484410835575!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00542949115458985!GO:0015002;heme-copper terminal oxidase activity;0.00542949115458985!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00542949115458985!GO:0004129;cytochrome-c oxidase activity;0.00542949115458985!GO:0045941;positive regulation of transcription;0.00543005414100347!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00543005414100347!GO:0007033;vacuole organization and biogenesis;0.00543005414100347!GO:0005774;vacuolar membrane;0.00574534836881184!GO:0043433;negative regulation of transcription factor activity;0.00601228404868174!GO:0000059;protein import into nucleus, docking;0.00602519087855565!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.00616445026599698!GO:0006417;regulation of translation;0.00631882576617205!GO:0006839;mitochondrial transport;0.0064522481814021!GO:0016126;sterol biosynthetic process;0.00646899717965856!GO:0008610;lipid biosynthetic process;0.00650408382195136!GO:0006082;organic acid metabolic process;0.00651846729597337!GO:0007040;lysosome organization and biogenesis;0.0065556886778683!GO:0006979;response to oxidative stress;0.00671311142727351!GO:0048500;signal recognition particle;0.00676453631998726!GO:0045893;positive regulation of transcription, DNA-dependent;0.00687365787141964!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00697589427793793!GO:0019752;carboxylic acid metabolic process;0.0071739913239386!GO:0006650;glycerophospholipid metabolic process;0.00728857272852368!GO:0046483;heterocycle metabolic process;0.00747047274598769!GO:0006383;transcription from RNA polymerase III promoter;0.00753669840021413!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00754957999923293!GO:0046519;sphingoid metabolic process;0.0083902270511317!GO:0033673;negative regulation of kinase activity;0.00844155047634976!GO:0006469;negative regulation of protein kinase activity;0.00844155047634976!GO:0031902;late endosome membrane;0.00853456921856952!GO:0001666;response to hypoxia;0.00870294343619842!GO:0006334;nucleosome assembly;0.00870737073008606!GO:0030119;AP-type membrane coat adaptor complex;0.00893582043641665!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00902596994079275!GO:0003746;translation elongation factor activity;0.00906587896917125!GO:0006595;polyamine metabolic process;0.00910745016993438!GO:0009966;regulation of signal transduction;0.00922909060334485!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.00945807142588135!GO:0051287;NAD binding;0.00990347850718399!GO:0045926;negative regulation of growth;0.00992985760578042!GO:0051059;NF-kappaB binding;0.0100189464841756!GO:0051252;regulation of RNA metabolic process;0.0102368382049522!GO:0030041;actin filament polymerization;0.0104759142128389!GO:0007034;vacuolar transport;0.0105375756171744!GO:0009615;response to virus;0.0105541552300289!GO:0006497;protein amino acid lipidation;0.0106906310382278!GO:0016481;negative regulation of transcription;0.0107928845902438!GO:0051348;negative regulation of transferase activity;0.0111868037341393!GO:0051045;negative regulation of membrane protein ectodomain proteolysis;0.0113719519795111!GO:0051043;regulation of membrane protein ectodomain proteolysis;0.0113719519795111!GO:0004004;ATP-dependent RNA helicase activity;0.0114578649488918!GO:0005520;insulin-like growth factor binding;0.0115761761418448!GO:0001726;ruffle;0.0116069384336566!GO:0008154;actin polymerization and/or depolymerization;0.0117210177951837!GO:0005096;GTPase activator activity;0.0118126348281243!GO:0030880;RNA polymerase complex;0.0118706560800292!GO:0005862;muscle thin filament tropomyosin;0.0126398612785971!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0127401732572176!GO:0045047;protein targeting to ER;0.0127401732572176!GO:0005869;dynactin complex;0.0128374939939493!GO:0043065;positive regulation of apoptosis;0.0129687568264988!GO:0050790;regulation of catalytic activity;0.0129687568264988!GO:0050662;coenzyme binding;0.0132004320912363!GO:0044437;vacuolar part;0.0134264838527985!GO:0006672;ceramide metabolic process;0.0136480512150772!GO:0006007;glucose catabolic process;0.0140327868263853!GO:0043068;positive regulation of programmed cell death;0.0141518631800482!GO:0006260;DNA replication;0.0146320678470033!GO:0030131;clathrin adaptor complex;0.0147810925884353!GO:0031301;integral to organelle membrane;0.0150288620476357!GO:0065007;biological regulation;0.0151645157156443!GO:0051087;chaperone binding;0.0155072192926471!GO:0031497;chromatin assembly;0.0157147021582362!GO:0030521;androgen receptor signaling pathway;0.0158831638353714!GO:0003729;mRNA binding;0.0162251014616941!GO:0005765;lysosomal membrane;0.0164560118513132!GO:0006892;post-Golgi vesicle-mediated transport;0.0165711023027413!GO:0005100;Rho GTPase activator activity;0.016596073523369!GO:0009889;regulation of biosynthetic process;0.0176938282898421!GO:0007242;intracellular signaling cascade;0.0181150300599137!GO:0008312;7S RNA binding;0.0181237178863053!GO:0043488;regulation of mRNA stability;0.0181237178863053!GO:0043487;regulation of RNA stability;0.0181237178863053!GO:0050811;GABA receptor binding;0.0181709615177938!GO:0007041;lysosomal transport;0.0181883647338216!GO:0008180;signalosome;0.0182054949251873!GO:0035258;steroid hormone receptor binding;0.0185821993788073!GO:0006778;porphyrin metabolic process;0.018610590420029!GO:0033013;tetrapyrrole metabolic process;0.018610590420029!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.0194445744138539!GO:0015631;tubulin binding;0.0195349832717999!GO:0003711;transcription elongation regulator activity;0.0198061075900618!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0200057173282855!GO:0006740;NADPH regeneration;0.0207357252484788!GO:0006098;pentose-phosphate shunt;0.0207357252484788!GO:0031418;L-ascorbic acid binding;0.0213150066260435!GO:0005801;cis-Golgi network;0.0214409229024292!GO:0006693;prostaglandin metabolic process;0.0214409229024292!GO:0006692;prostanoid metabolic process;0.0214409229024292!GO:0008283;cell proliferation;0.0217068247478301!GO:0031529;ruffle organization and biogenesis;0.0218764358753493!GO:0009112;nucleobase metabolic process;0.0218904378164583!GO:0006458;'de novo' protein folding;0.0219172486004501!GO:0051084;'de novo' posttranslational protein folding;0.0219172486004501!GO:0005684;U2-dependent spliceosome;0.0226131461306577!GO:0035035;histone acetyltransferase binding;0.0227882780233438!GO:0042168;heme metabolic process;0.0234653040121045!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.0238187762386469!GO:0000428;DNA-directed RNA polymerase complex;0.0238187762386469!GO:0006984;ER-nuclear signaling pathway;0.023865771485994!GO:0031326;regulation of cellular biosynthetic process;0.0240725070053483!GO:0006402;mRNA catabolic process;0.0242318833682682!GO:0031227;intrinsic to endoplasmic reticulum membrane;0.0242466912380086!GO:0005975;carbohydrate metabolic process;0.0242526974945573!GO:0043022;ribosome binding;0.0244133061144782!GO:0046870;cadmium ion binding;0.0244133061144782!GO:0007030;Golgi organization and biogenesis;0.02441483722551!GO:0051128;regulation of cellular component organization and biogenesis;0.0244161733070921!GO:0022407;regulation of cell-cell adhesion;0.0244161733070921!GO:0006506;GPI anchor biosynthetic process;0.0245124628919362!GO:0042158;lipoprotein biosynthetic process;0.0248418987759742!GO:0008538;proteasome activator activity;0.0264158945501768!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0264158945501768!GO:0006611;protein export from nucleus;0.0265901584959009!GO:0005099;Ras GTPase activator activity;0.0272656660853912!GO:0031901;early endosome membrane;0.027270156944098!GO:0048144;fibroblast proliferation;0.0273241644042882!GO:0048145;regulation of fibroblast proliferation;0.0273241644042882!GO:0006354;RNA elongation;0.0274851093200409!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0274851093200409!GO:0006897;endocytosis;0.0276178246588337!GO:0010324;membrane invagination;0.0276178246588337!GO:0019318;hexose metabolic process;0.0276608133729143!GO:0006695;cholesterol biosynthetic process;0.0277936462034722!GO:0022408;negative regulation of cell-cell adhesion;0.02779627836211!GO:0005832;chaperonin-containing T-complex;0.028356729227332!GO:0006401;RNA catabolic process;0.0284279782684952!GO:0031543;peptidyl-proline dioxygenase activity;0.0285584789035932!GO:0000030;mannosyltransferase activity;0.0289114828590941!GO:0008022;protein C-terminus binding;0.029069015076498!GO:0015630;microtubule cytoskeleton;0.0290859101193108!GO:0018193;peptidyl-amino acid modification;0.0291895689599698!GO:0005813;centrosome;0.0295275507778228!GO:0030145;manganese ion binding;0.0295275507778228!GO:0009116;nucleoside metabolic process;0.029668465344157!GO:0030833;regulation of actin filament polymerization;0.029668465344157!GO:0000785;chromatin;0.0297358516027447!GO:0003756;protein disulfide isomerase activity;0.0298610424901186!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0298610424901186!GO:0006505;GPI anchor metabolic process;0.0302828381713561!GO:0007178;transmembrane receptor protein serine/threonine kinase signaling pathway;0.0306539046306531!GO:0006807;nitrogen compound metabolic process;0.0307911088220799!GO:0005996;monosaccharide metabolic process;0.0311959991685771!GO:0000049;tRNA binding;0.0313098499914814!GO:0008637;apoptotic mitochondrial changes;0.033766967645449!GO:0007050;cell cycle arrest;0.0340988555857466!GO:0006607;NLS-bearing substrate import into nucleus;0.0352656793803443!GO:0046822;regulation of nucleocytoplasmic transport;0.0352656793803443!GO:0030032;lamellipodium biogenesis;0.0352656793803443!GO:0001953;negative regulation of cell-matrix adhesion;0.0353987138758989!GO:0051098;regulation of binding;0.0364484200122399!GO:0051539;4 iron, 4 sulfur cluster binding;0.0364484200122399!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0368490753252984!GO:0003779;actin binding;0.0371963789233643!GO:0030433;ER-associated protein catabolic process;0.0372115741233791!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0372115741233791!GO:0006643;membrane lipid metabolic process;0.0372666280654974!GO:0044438;microbody part;0.0372666280654974!GO:0044439;peroxisomal part;0.0372666280654974!GO:0030384;phosphoinositide metabolic process;0.0373178059095144!GO:0016272;prefoldin complex;0.0376516494694496!GO:0050681;androgen receptor binding;0.038081865251243!GO:0008033;tRNA processing;0.0386737994865725!GO:0006739;NADP metabolic process;0.0388909420929989!GO:0030140;trans-Golgi network transport vesicle;0.039710251032924!GO:0046979;TAP2 binding;0.0401023564701058!GO:0046977;TAP binding;0.0401023564701058!GO:0046978;TAP1 binding;0.0401023564701058!GO:0046426;negative regulation of JAK-STAT cascade;0.0402693523729844!GO:0000087;M phase of mitotic cell cycle;0.0404187491435681!GO:0009893;positive regulation of metabolic process;0.0417352672707696!GO:0008064;regulation of actin polymerization and/or depolymerization;0.0420521998652819!GO:0031625;ubiquitin protein ligase binding;0.0436003688184001!GO:0051329;interphase of mitotic cell cycle;0.04378511316721!GO:0032507;maintenance of cellular protein localization;0.0441150706263323!GO:0022415;viral reproductive process;0.0441480895413485!GO:0008147;structural constituent of bone;0.0441542774171787!GO:0007067;mitosis;0.0449544084055032!GO:0019798;procollagen-proline dioxygenase activity;0.045318194808612!GO:0033239;negative regulation of amine metabolic process;0.045318194808612!GO:0045763;negative regulation of amino acid metabolic process;0.045318194808612!GO:0001933;negative regulation of protein amino acid phosphorylation;0.045318194808612!GO:0051090;regulation of transcription factor activity;0.045328459830192!GO:0016628;oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor;0.0455001250488466!GO:0048146;positive regulation of fibroblast proliferation;0.0456597513124308!GO:0008475;procollagen-lysine 5-dioxygenase activity;0.0457759985047391!GO:0030911;TPR domain binding;0.0459417230895867!GO:0031272;regulation of pseudopodium formation;0.0470386985953878!GO:0031269;pseudopodium formation;0.0470386985953878!GO:0031344;regulation of cell projection organization and biogenesis;0.0470386985953878!GO:0031268;pseudopodium organization and biogenesis;0.0470386985953878!GO:0031346;positive regulation of cell projection organization and biogenesis;0.0470386985953878!GO:0031274;positive regulation of pseudopodium formation;0.0470386985953878!GO:0007021;tubulin folding;0.0472296036854236!GO:0007162;negative regulation of cell adhesion;0.0474436056032875!GO:0008234;cysteine-type peptidase activity;0.0474436056032875!GO:0000339;RNA cap binding;0.0476950624257656!GO:0002474;antigen processing and presentation of peptide antigen via MHC class I;0.0478018821724147!GO:0051101;regulation of DNA binding;0.0480356106431053!GO:0006779;porphyrin biosynthetic process;0.0483170188590152!GO:0033014;tetrapyrrole biosynthetic process;0.0483170188590152!GO:0043086;negative regulation of catalytic activity;0.048510872918523!GO:0050178;phenylpyruvate tautomerase activity;0.0485703956195917!GO:0007160;cell-matrix adhesion;0.0494379872365303!GO:0044452;nucleolar part;0.0495372604326607!GO:0006066;alcohol metabolic process;0.0497484334484465
|sample_id=11438
|sample_id=11438
|sample_note=
|sample_note=
Line 75: Line 105:
|sample_tissue=subclavian artery
|sample_tissue=subclavian artery
|top_motifs=PPARG:2.65132014225;HIF1A:2.13071926353;ALX4:1.94830397348;NFE2L1:1.67538721944;GCM1,2:1.62894206982;ZBTB6:1.6022380438;ZIC1..3:1.57372346407;EBF1:1.44844461946;HMX1:1.40949317241;NKX2-2,8:1.38502612087;HES1:1.38465378975;IKZF1:1.26674954518;GZF1:1.21877454913;GTF2A1,2:1.16854203778;EN1,2:1.16695380701;TFAP4:1.14230699681;UFEwm:1.13277938579;NFATC1..3:1.0754356196;ATF6:1.04774779788;TLX1..3_NFIC{dimer}:1.04062850361;HAND1,2:1.03646599703;GLI1..3:1.02020841282;ESRRA:1.0010942864;HSF1,2:0.986639239979;SMAD1..7,9:0.980380128306;TBP:0.953438659585;ONECUT1,2:0.939883955938;TEAD1:0.938471412513;NKX3-1:0.932351943946;ZNF238:0.923929551836;RXR{A,B,G}:0.836530727124;SRF:0.82389666535;FOXL1:0.819986631166;TAL1_TCF{3,4,12}:0.747882370811;NANOG{mouse}:0.724697825888;XBP1:0.718508218962;TP53:0.716710896283;POU3F1..4:0.711932424763;NFIX:0.701046914753;FOX{I1,J2}:0.694838796386;HOXA9_MEIS1:0.668247728553;MYBL2:0.661666002984;TFAP2{A,C}:0.65340401184;TFCP2:0.631035190825;PAX5:0.626653221348;ZNF148:0.595571326868;TBX4,5:0.549205920547;KLF4:0.548620473576;IRF7:0.544924435442;MTF1:0.526956894067;ARID5B:0.490981195622;ESR1:0.463793412692;ZNF423:0.462207643848;RXRA_VDR{dimer}:0.460553434092;MAFB:0.443768016103;LHX3,4:0.434565856656;HOX{A5,B5}:0.408501778052;REST:0.40405065017;MTE{core}:0.388194074738;NFE2L2:0.378161921541;IRF1,2:0.372388252522;HLF:0.353334201;GTF2I:0.338051069311;TFAP2B:0.309290007172;NR3C1:0.306744966245;HIC1:0.26907175589;GFI1B:0.251951925869;BACH2:0.236581729927;SPZ1:0.228598238392;FOSL2:0.21374493195;FOS_FOS{B,L1}_JUN{B,D}:0.205452195128;CRX:0.199200347566;ALX1:0.196838654759;XCPE1{core}:0.19676318542;POU6F1:0.193460727132;POU2F1..3:0.191391037312;STAT5{A,B}:0.189657643143;AHR_ARNT_ARNT2:0.176403881302;STAT2,4,6:0.15635006021;POU1F1:0.150388269786;SOX17:0.146363225066;MZF1:0.145109811217;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.143473801674;CDC5L:0.13823450777;EVI1:0.128158768236;HNF1A:0.122118011215;NHLH1,2:0.11120699947;NKX3-2:0.0887089908949;ELK1,4_GABP{A,B1}:0.0800634308526;PATZ1:0.0794367320527;JUN:0.075437080062;ADNP_IRX_SIX_ZHX:0.0706183738459;PAX1,9:0.0539007727191;AR:0.035758631975;MYFfamily:0.0281456663858;NFKB1_REL_RELA:0.0151260634354;SP1:-0.0128525626905;MAZ:-0.0527884333992;MEF2{A,B,C,D}:-0.0597902864475;PRDM1:-0.0634085917131;ZFP161:-0.0651418765054;PAX6:-0.0794440807742;CEBPA,B_DDIT3:-0.0816314532445;NR6A1:-0.103930676876;MED-1{core}:-0.118431975079;PAX2:-0.123489988221;PAX3,7:-0.143548166931;TGIF1:-0.15611375763;VSX1,2:-0.167463068922;LMO2:-0.194967379922;MYB:-0.198667238152;ETS1,2:-0.198746084285;YY1:-0.202386099806;PAX8:-0.203953516127;MYOD1:-0.206511931191;HOX{A6,A7,B6,B7}:-0.211312980285;LEF1_TCF7_TCF7L1,2:-0.211724573855;NFE2:-0.219142913825;RUNX1..3:-0.238254496236;ELF1,2,4:-0.250988897238;HMGA1,2:-0.257509337556;POU5F1:-0.270867701308;bHLH_family:-0.300813695858;HBP1_HMGB_SSRP1_UBTF:-0.307476924435;HOX{A4,D4}:-0.331097914286;RFX1:-0.334470973063;SPI1:-0.363048650324;HNF4A_NR2F1,2:-0.368956142426;NRF1:-0.378539864814;SOX{8,9,10}:-0.38226386974;IKZF2:-0.383270705045;SNAI1..3:-0.389493631395;ZEB1:-0.394864325473;ATF5_CREB3:-0.397555084079;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.397770827333;NFIL3:-0.39854571523;EGR1..3:-0.402793411368;ZNF384:-0.403469846883;PRRX1,2:-0.409584809839;SPIB:-0.41208687484;AIRE:-0.430097604451;NR5A1,2:-0.485833220011;GATA6:-0.502118440971;ZNF143:-0.504498693692;CREB1:-0.512113984894;BPTF:-0.542499592198;EP300:-0.54583250562;FOX{D1,D2}:-0.54591026633;PBX1:-0.54738455965;ATF2:-0.579574323825;NR1H4:-0.610303062568;FOXN1:-0.624214072821;RREB1:-0.627814344699;FOXP3:-0.677656241823;FOXO1,3,4:-0.690763076532;FOXD3:-0.706676112215;DMAP1_NCOR{1,2}_SMARC:-0.712380316301;FOXM1:-0.714326227467;TOPORS:-0.752302011957;GATA4:-0.762971956845;SOX2:-0.788325361698;CDX1,2,4:-0.807190025118;SOX5:-0.813125011465;DBP:-0.814237925198;TLX2:-0.851847570464;T:-0.864891871506;GFI1:-0.893425819125;SREBF1,2:-0.894563441449;NANOG:-0.898372313354;ATF4:-0.912108228521;TEF:-0.958503449073;RORA:-0.974650411534;TFDP1:-1.00638937974;RFX2..5_RFXANK_RFXAP:-1.01089738128;FOXQ1:-1.03655743311;FOX{F1,F2,J1}:-1.06085278335;PDX1:-1.10319710835;PITX1..3:-1.12414556188;OCT4_SOX2{dimer}:-1.15492031852;E2F1..5:-1.16741662303;RBPJ:-1.17167003372;CUX2:-1.1800097464;NKX2-3_NKX2-5:-1.21140204579;FOXP1:-1.22225203625;STAT1,3:-1.2607405709;ZBTB16:-1.296194008;NFY{A,B,C}:-1.29697480181;BREu{core}:-1.44387173143;FOXA2:-1.44707214474;PAX4:-1.60249042842;NKX2-1,4:-1.62826663734;NKX6-1,2:-2.11425654154
|top_motifs=PPARG:2.65132014225;HIF1A:2.13071926353;ALX4:1.94830397348;NFE2L1:1.67538721944;GCM1,2:1.62894206982;ZBTB6:1.6022380438;ZIC1..3:1.57372346407;EBF1:1.44844461946;HMX1:1.40949317241;NKX2-2,8:1.38502612087;HES1:1.38465378975;IKZF1:1.26674954518;GZF1:1.21877454913;GTF2A1,2:1.16854203778;EN1,2:1.16695380701;TFAP4:1.14230699681;UFEwm:1.13277938579;NFATC1..3:1.0754356196;ATF6:1.04774779788;TLX1..3_NFIC{dimer}:1.04062850361;HAND1,2:1.03646599703;GLI1..3:1.02020841282;ESRRA:1.0010942864;HSF1,2:0.986639239979;SMAD1..7,9:0.980380128306;TBP:0.953438659585;ONECUT1,2:0.939883955938;TEAD1:0.938471412513;NKX3-1:0.932351943946;ZNF238:0.923929551836;RXR{A,B,G}:0.836530727124;SRF:0.82389666535;FOXL1:0.819986631166;TAL1_TCF{3,4,12}:0.747882370811;NANOG{mouse}:0.724697825888;XBP1:0.718508218962;TP53:0.716710896283;POU3F1..4:0.711932424763;NFIX:0.701046914753;FOX{I1,J2}:0.694838796386;HOXA9_MEIS1:0.668247728553;MYBL2:0.661666002984;TFAP2{A,C}:0.65340401184;TFCP2:0.631035190825;PAX5:0.626653221348;ZNF148:0.595571326868;TBX4,5:0.549205920547;KLF4:0.548620473576;IRF7:0.544924435442;MTF1:0.526956894067;ARID5B:0.490981195622;ESR1:0.463793412692;ZNF423:0.462207643848;RXRA_VDR{dimer}:0.460553434092;MAFB:0.443768016103;LHX3,4:0.434565856656;HOX{A5,B5}:0.408501778052;REST:0.40405065017;MTE{core}:0.388194074738;NFE2L2:0.378161921541;IRF1,2:0.372388252522;HLF:0.353334201;GTF2I:0.338051069311;TFAP2B:0.309290007172;NR3C1:0.306744966245;HIC1:0.26907175589;GFI1B:0.251951925869;BACH2:0.236581729927;SPZ1:0.228598238392;FOSL2:0.21374493195;FOS_FOS{B,L1}_JUN{B,D}:0.205452195128;CRX:0.199200347566;ALX1:0.196838654759;XCPE1{core}:0.19676318542;POU6F1:0.193460727132;POU2F1..3:0.191391037312;STAT5{A,B}:0.189657643143;AHR_ARNT_ARNT2:0.176403881302;STAT2,4,6:0.15635006021;POU1F1:0.150388269786;SOX17:0.146363225066;MZF1:0.145109811217;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.143473801674;CDC5L:0.13823450777;EVI1:0.128158768236;HNF1A:0.122118011215;NHLH1,2:0.11120699947;NKX3-2:0.0887089908949;ELK1,4_GABP{A,B1}:0.0800634308526;PATZ1:0.0794367320527;JUN:0.075437080062;ADNP_IRX_SIX_ZHX:0.0706183738459;PAX1,9:0.0539007727191;AR:0.035758631975;MYFfamily:0.0281456663858;NFKB1_REL_RELA:0.0151260634354;SP1:-0.0128525626905;MAZ:-0.0527884333992;MEF2{A,B,C,D}:-0.0597902864475;PRDM1:-0.0634085917131;ZFP161:-0.0651418765054;PAX6:-0.0794440807742;CEBPA,B_DDIT3:-0.0816314532445;NR6A1:-0.103930676876;MED-1{core}:-0.118431975079;PAX2:-0.123489988221;PAX3,7:-0.143548166931;TGIF1:-0.15611375763;VSX1,2:-0.167463068922;LMO2:-0.194967379922;MYB:-0.198667238152;ETS1,2:-0.198746084285;YY1:-0.202386099806;PAX8:-0.203953516127;MYOD1:-0.206511931191;HOX{A6,A7,B6,B7}:-0.211312980285;LEF1_TCF7_TCF7L1,2:-0.211724573855;NFE2:-0.219142913825;RUNX1..3:-0.238254496236;ELF1,2,4:-0.250988897238;HMGA1,2:-0.257509337556;POU5F1:-0.270867701308;bHLH_family:-0.300813695858;HBP1_HMGB_SSRP1_UBTF:-0.307476924435;HOX{A4,D4}:-0.331097914286;RFX1:-0.334470973063;SPI1:-0.363048650324;HNF4A_NR2F1,2:-0.368956142426;NRF1:-0.378539864814;SOX{8,9,10}:-0.38226386974;IKZF2:-0.383270705045;SNAI1..3:-0.389493631395;ZEB1:-0.394864325473;ATF5_CREB3:-0.397555084079;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.397770827333;NFIL3:-0.39854571523;EGR1..3:-0.402793411368;ZNF384:-0.403469846883;PRRX1,2:-0.409584809839;SPIB:-0.41208687484;AIRE:-0.430097604451;NR5A1,2:-0.485833220011;GATA6:-0.502118440971;ZNF143:-0.504498693692;CREB1:-0.512113984894;BPTF:-0.542499592198;EP300:-0.54583250562;FOX{D1,D2}:-0.54591026633;PBX1:-0.54738455965;ATF2:-0.579574323825;NR1H4:-0.610303062568;FOXN1:-0.624214072821;RREB1:-0.627814344699;FOXP3:-0.677656241823;FOXO1,3,4:-0.690763076532;FOXD3:-0.706676112215;DMAP1_NCOR{1,2}_SMARC:-0.712380316301;FOXM1:-0.714326227467;TOPORS:-0.752302011957;GATA4:-0.762971956845;SOX2:-0.788325361698;CDX1,2,4:-0.807190025118;SOX5:-0.813125011465;DBP:-0.814237925198;TLX2:-0.851847570464;T:-0.864891871506;GFI1:-0.893425819125;SREBF1,2:-0.894563441449;NANOG:-0.898372313354;ATF4:-0.912108228521;TEF:-0.958503449073;RORA:-0.974650411534;TFDP1:-1.00638937974;RFX2..5_RFXANK_RFXAP:-1.01089738128;FOXQ1:-1.03655743311;FOX{F1,F2,J1}:-1.06085278335;PDX1:-1.10319710835;PITX1..3:-1.12414556188;OCT4_SOX2{dimer}:-1.15492031852;E2F1..5:-1.16741662303;RBPJ:-1.17167003372;CUX2:-1.1800097464;NKX2-3_NKX2-5:-1.21140204579;FOXP1:-1.22225203625;STAT1,3:-1.2607405709;ZBTB16:-1.296194008;NFY{A,B,C}:-1.29697480181;BREu{core}:-1.44387173143;FOXA2:-1.44707214474;PAX4:-1.60249042842;NKX2-1,4:-1.62826663734;NKX6-1,2:-2.11425654154
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11438-118H7;search_select_hide=table117:FF:11438-118H7
}}
}}

Latest revision as of 18:01, 4 June 2020

Name:Smooth Muscle Cells - Subclavian Artery, donor3
Species:Human (Homo sapiens)
Library ID:CNhs12048
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuesubclavian artery
dev stage59 years old adult
sexmale
age59
cell typesmooth muscle cell
cell lineNA
companyCell Applications
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot number2115
catalog numberCA3010-R10a
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005893
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs12048 CAGE DRX008503 DRR009375
Accession ID Hg19

Library idBAMCTSS
CNhs12048 DRZ000800 DRZ002185
Accession ID Hg38

Library idBAMCTSS
CNhs12048 DRZ012150 DRZ013535
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
sRNA-Seq  SAMD00005893
Library accession numbers

Library idMethodExp. accession idRun accession id
SRhi10012.TAGCTT sRNA-Seq DRX037190 DRR041556
Accession ID Hg19

Library idBAMCTSS
SRhi10012.TAGCTT DRZ007198


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.178
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.379
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.675
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.232
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.49
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.402
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.328
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.373
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0.654
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.304
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory-0.00701
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0.365
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth-0.028
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.411
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.0298
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.61
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0.158
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.731
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic1.093
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.365
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.338
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12048

Jaspar motifP-value
MA0002.20.784
MA0003.10.198
MA0004.10.111
MA0006.10.129
MA0007.10.614
MA0009.10.868
MA0014.10.753
MA0017.10.892
MA0018.24.98701e-4
MA0019.10.262
MA0024.16.98271e-10
MA0025.10.454
MA0027.10.488
MA0028.10.184
MA0029.10.771
MA0030.10.267
MA0031.10.0186
MA0035.20.217
MA0038.10.00104
MA0039.20.285
MA0040.10.255
MA0041.10.171
MA0042.10.565
MA0043.15.01694e-4
MA0046.10.616
MA0047.20.98
MA0048.10.613
MA0050.10.00548
MA0051.16.91852e-5
MA0052.10.522
MA0055.10.528
MA0057.10.252
MA0058.10.0454
MA0059.10.741
MA0060.13.05271e-9
MA0061.10.374
MA0062.20.00426
MA0065.20.466
MA0066.10.353
MA0067.10.0173
MA0068.10.819
MA0069.10.38
MA0070.10.351
MA0071.10.862
MA0072.10.827
MA0073.10.849
MA0074.10.292
MA0076.10.0622
MA0077.10.28
MA0078.10.292
MA0079.20.332
MA0080.20.00165
MA0081.10.0972
MA0083.10.0238
MA0084.10.14
MA0087.10.393
MA0088.10.892
MA0090.10.00223
MA0091.10.424
MA0092.10.136
MA0093.10.0959
MA0099.20.0115
MA0100.10.0466
MA0101.10.933
MA0102.20.193
MA0103.10.449
MA0104.20.0683
MA0105.10.257
MA0106.10.152
MA0107.10.716
MA0108.23.29022e-4
MA0111.10.02
MA0112.20.00842
MA0113.10.998
MA0114.10.77
MA0115.10.297
MA0116.10.315
MA0117.10.373
MA0119.10.0709
MA0122.10.748
MA0124.10.141
MA0125.10.271
MA0131.10.607
MA0135.10.55
MA0136.10.0107
MA0137.20.448
MA0138.20.511
MA0139.10.347
MA0140.10.365
MA0141.10.422
MA0142.10.349
MA0143.10.978
MA0144.10.308
MA0145.10.162
MA0146.10.425
MA0147.10.311
MA0148.10.537
MA0149.10.905
MA0150.10.876
MA0152.10.616
MA0153.10.672
MA0154.10.16
MA0155.10.0527
MA0156.10.172
MA0157.10.389
MA0159.10.113
MA0160.10.732
MA0162.10.0286
MA0163.10.0115
MA0164.10.447
MA0258.10.121
MA0259.10.896



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12048

Novel motifP-value
10.876
100.833
1000.467
1010.277
1020.775
1030.0333
1040.432
1050.465
1060.0484
1070.0689
1080.693
1090.121
110.142
1100.638
1110.76
1120.351
1130.0625
1140.108
1150.0487
1160.0332
1170.5
1180.546
1190.596
120.623
1200.0824
1210.97
1220.336
1230.00867
1240.522
1250.557
1260.625
1270.69
1280.134
1290.97
130.653
1300.85
1310.339
1320.726
1330.381
1340.775
1350.0544
1360.407
1370.828
1380.587
1390.0815
140.481
1400.839
1410.668
1420.574
1430.0895
1440.592
1450.626
1460.795
1470.0723
1480.56
1490.0377
150.86
1500.164
1510.569
1520.0253
1530.242
1540.951
1550.166
1560.639
1570.607
1580.0277
1590.309
160.0381
1600.19
1610.663
1620.954
1630.757
1640.176
1650.741
1660.0496
1670.468
1680.31
1690.0834
170.163
180.0627
190.0487
20.2
200.427
210.41
220.184
230.0481
240.362
250.312
260.886
270.447
280.206
290.169
30.426
300.274
310.525
325.34805e-5
330.959
340.686
350.541
360.0674
370.0788
380.731
390.171
40.701
400.736
410.336
420.959
430.328
440.161
450.41
460.31
470.442
480.384
490.777
50.664
500.748
510.733
520.897
530.24
540.5
550.265
560.642
570.788
580.836
590.0156
60.873
600.492
610.928
620.648
630.275
640.974
650.19
660.284
670.212
680.695
690.52
70.592
700.0371
710.547
720.923
730.0055
740.728
750.326
760.817
770.00217
780.895
790.012
80.156
800.717
810.771
820.573
830.905
840.608
850.0254
860.365
870.00644
880.368
890.0105
90.264
900.823
910.6
920.357
930.464
940.907
950.249
960.699
970.805
980.754
990.0341



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs12048


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002371 (somatic cell)
0000393 (electrically responsive cell)
0000183 (contractile cell)
0000187 (muscle cell)
0000192 (smooth muscle cell)
0000211 (electrically active cell)
0000255 (eukaryotic cell)
0000359 (vascular associated smooth muscle cell)
0002595 (smooth muscle cell of the subclavian artery)

UBERON: Anatomy
0000468 (multi-cellular organism)
0001637 (artery)
0002100 (trunk)
0000483 (epithelium)
0000479 (tissue)
0000055 (vessel)
0004111 (anatomical conduit)
0000475 (organism subdivision)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0003914 (epithelial tube)
0000025 (tube)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0009569 (subdivision of trunk)
0004573 (systemic artery)
0003834 (thoracic segment blood vessel)
0003509 (arterial blood vessel)
0007500 (epithelial tube open at both ends)
0001981 (blood vessel)
0002049 (vasculature)
0003513 (trunk blood vessel)
0010317 (germ layer / neural crest derived structure)
0007798 (vascular system)
0001533 (subclavian artery)
0004535 (cardiovascular system)
0004571 (systemic arterial system)
0000915 (thoracic segment of trunk)
0004572 (arterial system)
0004537 (blood vasculature)
0001009 (circulatory system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000167 (smooth muscle cell sample)
0000175 (human smooth muscle cell of subclavian artery sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000355 (multi-potent skeletal muscle stem cell)
CL:0000222 (mesodermal cell)
CL:0000514 (smooth muscle myoblast)

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