FF:11304-117B8: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON:0000061,UBERON:0000465,UBERON: | |DRA_sample_Accession=CAGE@SAMD00005996 | ||
|accession_numbers=CAGE;DRX008278;DRR009150;DRZ000575;DRZ001960;DRZ011925;DRZ013310 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002384,UBERON:0000033,UBERON:0000479,UBERON:0001007,UBERON:0004121,UBERON:0004119,UBERON:0010314,UBERON:0011216,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0001444,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000075,UBERON:0010317,UBERON:0001555,UBERON:0001758,UBERON:0000153,UBERON:0007811,UBERON:0002204,UBERON:0001434,UBERON:0000165,UBERON:0003672,UBERON:0011137,UBERON:0010323,UBERON:0003129 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000255,CL:0000057,CL:0002556 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000057,FF:0000001,FF:0000067 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score= | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 42: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Periodontal%2520Ligament%252c%2520donor5%2520%2528PL30%2529.CNhs11953.11304-117B8.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Periodontal%2520Ligament%252c%2520donor5%2520%2528PL30%2529.CNhs11953.11304-117B8.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Periodontal%2520Ligament%252c%2520donor5%2520%2528PL30%2529.CNhs11953.11304-117B8.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Periodontal%2520Ligament%252c%2520donor5%2520%2528PL30%2529.CNhs11953.11304-117B8.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Periodontal%2520Ligament%252c%2520donor5%2520%2528PL30%2529.CNhs11953.11304-117B8.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11304-117B8 | |id=FF:11304-117B8 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000067 | ||
|is_obsolete= | |||
|library_id=CNhs11953 | |||
|library_id_phase_based=2:CNhs11953 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11304 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11304 | |||
|name=Fibroblast - Periodontal Ligament, donor5 (PL30) | |name=Fibroblast - Periodontal Ligament, donor5 (PL30) | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 61: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11953,LSID836,release011,COMPLETED | |profile_hcage=CNhs11953,LSID836,release011,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0,0,0,0,0,0.187197605608152,0,0.178320892589236,-0.0558264651792785,0,0,0,0,0,0,0,0,0,0,0,0,0,0.455724500721373,0,0,0,0,0,0.185221936359853,0,0,0.0746712056854315,0,0,0,0,0,0,0,0,0,0,0.116105357238318,0,0.364116380387286,0.116105357238318,0,0,0,0,0,0,0,-0.0242150211128343,0,0,0,0.207627795464294,0,0.0125170429976535,0,0.019112995995713,0,0,0.0187617300252212,0,0,0,0,0,0,0,0,0.116105357238318,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.043749816242141,0.103813897732147,0,0,-0.0584468268118252,0.0153796927017946,0,0.347515635694538,0,0.116105357238318,0.109592444226587,0.167106191685814,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103269001010653,0.116105357238318,0,0,0.263475224675138,0.365123720524251,0,0,0,0,0,0 | |||
|repeat_enrich_byname=0,0,0,0,0.109592444226587,0,0.116105357238318,0,0,0,0,0.207627795464294,0,0.347515635694538,0,0,0.205975315509762,0,-0.0209320279566817,-0.143515142523472,0,0,0.19055405325484,0,0,0,0,0,0,0,0,0,0.973851725936068,0,0.0656928056490032,0,0,0,0,0,-0.189366873660089,0,0.0947711906662865,0.139283534386926,0,0,0,0,0.152356095638133,0,-0.120879483793741,0.124907627140876,-0.105506230864489,0.00363632743914078,-0.055712496781182,0,0,0,0.0920180939005657,0.350346863111448,0,0,0.368940487367763,-0.1232969399415,0,0,1.10508616784959,0,0.386189324273076,0.131880264309536,0,0,0,0,0,0,0,0,0,0,0,0,0,0.000559211797722415,0.0765503928301557,0,0,0,0,-0.118057499449514,0,0,-0.165658360492273,0.01354785614305,-0.144715859435591,-0.283578035056963,0,0.0451259086846251,-0.0151948958731934,0.058241765385032,-0.106941323891343,-0.0312964921328204,0.385020143093646,0,0.252612627175244,0.13571057870923,0.0107369217975086,-0.043749816242141,0,0.0827794430297524,-0.118877593296562,0,0,0,0.140609972797883,0,0,0.62225645694443,-0.0113749323870627,0.154786057397176,0.0123601603110142,0.0426015965950029,-0.160890149901222,-0.0395325284566706,0.0806220507349976,0.0572321967657095,0.266077929834879,0,0,0,-0.0249136740391497,0.0671625551207953,-0.0777676695470868,0,-0.030823271015654,0.139283534386926,0,-0.0162011535356895,-0.0369094226046343,0,0,0.169202667796411,0,0,0,0,0,-0.0391601198121692,0.0355097196133269,-0.116750204317227,0,-0.0723350224104995,0,-0.095516585598024,0,-0.34626677914775,0.137169935170517,0,-0.254775019057656,0,-0.0426810103882214,0.405309723940519,-0.108399246630743,0.0307593854035892,-0.0584468268118252,-0.155470071132238,0.125611785457678,0.0583277936652651,0.302376999863674,0.00742689963565357,1.26316970399948,-0.0376528261543412,0.417533955912928,0.15449430558648,0,0.034303235934839,0.0654293326317274,-0.21162703468825,0,-0.116734564869457,0,-0.15644239374984,-0.0427558572228637,-0.091773738886148,0.145169698010982,0,-0.121065941175026,-0.147513792184137,0,-0.0647565777076866,0.0292211199454922,0,0.132812749293271,-0.122694103869089,0.020160068601839,0.0606531382539201,0,0.162648500692315,0,0,0.0646513154233583,-0.235476037764389,0,0.156438268389107,-0.0711444105818039,0.00483146987450578,-0.115971073434934,0,0,-0.438072542528431,0,0.116105357238318,-0.32274823119012,0,-0.0817248203270411,-0.137220984248438,0.0489157319920024,0.0329671068596998,0,0,0.0301000294991181,0,0.112787527624606,0,0,0.0772006338361315,0.216419062987348,0,0,0,0.006503804196798,0.0310330017678361,0,0,0,0,0,0,-0.139415162322249,-0.147205534752154,0,0.018937402656518,0,0,0,0,0,0.0232545973045031,0,0.116105357238318,0.792951596478683,-0.0124079644390107,0.280521573832704,0,0,0,0,-0.215723402553475,-0.203236562094724,0,0.151317126130279,0,0,0,0,-0.0861409897892114,0,0,0,0.058052678619159,-0.057730457053664,0.139170110283714,0,0,0,0.126584587907334,0,0,0.116105357238318,0.0170074394721608,-0.0163172620233616,0,0,0.012618705102585,0,0.0809415722698581,-0.0815818795468414,0,0.04880494682972,0.664595567569755,-0.40386658061315,0,0,-0.261347131789888,0,0.103813897732147,0.0332453015269092,0,0.207627795464294,0,0,0,0,0,0,0,-0.0982091551614375,0.103813897732147,0,0,0,0,0,0,0,0,0,0,0.0817605321152033,-0.0922240566585104,0.116105357238318,0,0,0,0,0,0,0.033946655540256,0.0551282713732378,0.116105357238318,0,0,0,0,0.116105357238318,0,0,-0.263798144198948,0,0,0,0,0,0.019112995995713,0,0,0,0,-0.111652930358557,0,0,0.0701535035010243,0,0,0,0,0,0,0,0,0,0,0,0,0,0.280219903473677,0.373129096496939,0,0,0,0,0,0,0,0.178320892589236,0,0,0,0,0.00222098352934094,0,0,0,-0.104796384789156,0,0.187197605608152,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.058052678619159,0,0,0.713508470375785,0,0.0113133156630079,0.123166480840356,0,0,0.163927676163572,0,0,0,0,0,0,0.026712254590632,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.116105357238318,0,0,0,0,0,0,0.0207007623272506,0,0,0,0,0,0,0,0.185221936359853,0,0.058052678619159,-0.0920328098005262,0,0,0,0,0.0297914663305757,0,0.112358072588223,0.193392827065629,0.00736404642336785,0,0,0,0.119372245364814,0.207627795464294,0,0.00319361560291798,0,0.216402445209009,0,0,0,0,0,0,0,0,0.116105357238318,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.455724500721373,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0340113632754165,0.207627795464294,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.127609327195655,0,0,0,-0.213086229657044,0,0,0,0,0,0,0.116105357238318,0,0.207627795464294,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.318094869966636,0,0,0,0,0,0,0,0,0.116105357238318,0,0,0,0,0.15940572022524,0,0.3687775585653,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.147103734181517,0,0,0,0,-0.0476371106609188,0,0,0,0,0,0,0,0,0,0,0.116105357238318,0,0,0,0,0,0,0,0,0,0,0.14992838122062,0,0,0.45515697408962,0,0,0.0152795390402782,0,0,0,0,0,0,0,0,0,0.286195456544412,0,0,0,0,0,0,0,0,0,0,-0.0484300422256687,0,0,0,0,0,0,0,0,0.403538989509125,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.240347376296514,0.36512372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| |||
|rna_box=117 | |rna_box=117 | ||
|rna_catalog_number=N/A | |rna_catalog_number=N/A | ||
| Line 57: | Line 79: | ||
|rna_weight_ug=9.67846 | |rna_weight_ug=9.67846 | ||
|sample_age=40 | |sample_age=40 | ||
|sample_category=primary cells | |||
|sample_cell_catalog=N/A | |sample_cell_catalog=N/A | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 92: | ||
|sample_ethnicity=A | |sample_ethnicity=A | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;4.11512193839155e-220!GO:0005737;cytoplasm;4.46456709455307e-193!GO:0043226;organelle;1.685153858561e-172!GO:0043229;intracellular organelle;4.2613437361736e-172!GO:0043231;intracellular membrane-bound organelle;4.69733834297179e-166!GO:0043227;membrane-bound organelle;7.66458967125832e-166!GO:0044444;cytoplasmic part;2.19191688912566e-137!GO:0044422;organelle part;9.20663347561843e-132!GO:0044446;intracellular organelle part;2.51665173018541e-130!GO:0032991;macromolecular complex;7.38525787602081e-96!GO:0030529;ribonucleoprotein complex;1.95729027017545e-81!GO:0044238;primary metabolic process;5.28400591120641e-78!GO:0044237;cellular metabolic process;1.14379440831173e-77!GO:0005515;protein binding;2.15852532212722e-75!GO:0043170;macromolecule metabolic process;2.33154374990226e-71!GO:0005739;mitochondrion;9.95358717717815e-70!GO:0043233;organelle lumen;3.16601692318901e-64!GO:0031974;membrane-enclosed lumen;3.16601692318901e-64!GO:0003723;RNA binding;1.0531987054174e-58!GO:0044428;nuclear part;1.82027154426061e-58!GO:0005634;nucleus;2.33157900207274e-55!GO:0005840;ribosome;4.07902000521246e-53!GO:0019538;protein metabolic process;2.56774832627558e-52!GO:0031090;organelle membrane;5.47621376152487e-50!GO:0016043;cellular component organization and biogenesis;1.32114266151868e-49!GO:0043234;protein complex;2.26293578618409e-49!GO:0006412;translation;7.11901986369812e-49!GO:0003735;structural constituent of ribosome;4.9381306852954e-47!GO:0044260;cellular macromolecule metabolic process;9.23030036035383e-47!GO:0044429;mitochondrial part;3.72988951776973e-46!GO:0044267;cellular protein metabolic process;7.36407262894341e-46!GO:0015031;protein transport;6.3307817096108e-45!GO:0033036;macromolecule localization;1.65556074556354e-44!GO:0008104;protein localization;8.07092868737418e-42!GO:0045184;establishment of protein localization;2.19952223435481e-41!GO:0009058;biosynthetic process;6.49155463009607e-41!GO:0033279;ribosomal subunit;1.64961950059585e-40!GO:0044249;cellular biosynthetic process;1.88790547537645e-39!GO:0005829;cytosol;6.22523481608366e-39!GO:0031967;organelle envelope;9.54632626755968e-39!GO:0031975;envelope;1.69553667792581e-38!GO:0006396;RNA processing;1.72692238497988e-38!GO:0009059;macromolecule biosynthetic process;1.27114826852908e-37!GO:0031981;nuclear lumen;5.61394670972865e-35!GO:0046907;intracellular transport;1.21260023238181e-34!GO:0043283;biopolymer metabolic process;6.84541585179993e-34!GO:0043228;non-membrane-bound organelle;4.30784526080831e-31!GO:0043232;intracellular non-membrane-bound organelle;4.30784526080831e-31!GO:0010467;gene expression;4.72444900471765e-31!GO:0016071;mRNA metabolic process;7.04560409994452e-31!GO:0065003;macromolecular complex assembly;2.52386020286043e-30!GO:0006996;organelle organization and biogenesis;3.46685674727344e-30!GO:0005740;mitochondrial envelope;4.73161954444079e-30!GO:0005830;cytosolic ribosome (sensu Eukaryota);1.59886634801961e-29!GO:0006886;intracellular protein transport;1.64259131132944e-29!GO:0008380;RNA splicing;2.18994520307831e-29!GO:0031966;mitochondrial membrane;2.55325310498603e-28!GO:0019866;organelle inner membrane;8.20117588745853e-28!GO:0022607;cellular component assembly;1.83586544221725e-27!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;2.70190689138869e-27!GO:0006397;mRNA processing;9.39112946788088e-27!GO:0005743;mitochondrial inner membrane;2.8124594635324e-26!GO:0022613;ribonucleoprotein complex biogenesis and assembly;7.22807288707031e-26!GO:0006119;oxidative phosphorylation;1.5408837334541e-23!GO:0051641;cellular localization;9.71763522145118e-23!GO:0051649;establishment of cellular localization;9.76329563431971e-23!GO:0044445;cytosolic part;1.57163838580019e-22!GO:0044455;mitochondrial membrane part;9.3224016838454e-22!GO:0005654;nucleoplasm;2.25795817249126e-21!GO:0005681;spliceosome;5.22325990439003e-21!GO:0015935;small ribosomal subunit;5.37432387870193e-21!GO:0006457;protein folding;8.98008601750457e-21!GO:0015934;large ribosomal subunit;1.37055154317933e-20!GO:0005783;endoplasmic reticulum;1.52491408994026e-20!GO:0000166;nucleotide binding;1.09271186950353e-19!GO:0016462;pyrophosphatase activity;1.24438373681472e-19!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;1.35227173689761e-19!GO:0031980;mitochondrial lumen;1.35227173689761e-19!GO:0005759;mitochondrial matrix;1.35227173689761e-19!GO:0016817;hydrolase activity, acting on acid anhydrides;2.24879091282648e-19!GO:0048770;pigment granule;2.68069302388564e-19!GO:0042470;melanosome;2.68069302388564e-19!GO:0012505;endomembrane system;3.0171764350526e-19!GO:0006259;DNA metabolic process;5.25462016861442e-19!GO:0005746;mitochondrial respiratory chain;1.05657003095525e-18!GO:0017111;nucleoside-triphosphatase activity;1.2724366438578e-18!GO:0044451;nucleoplasm part;1.14684336164912e-17!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;1.84920403288853e-17!GO:0007049;cell cycle;2.95031041275498e-17!GO:0006512;ubiquitin cycle;3.91119389603362e-17!GO:0044432;endoplasmic reticulum part;4.01138018313537e-17!GO:0051186;cofactor metabolic process;4.53972486462158e-17!GO:0016874;ligase activity;7.97025361912852e-17!GO:0022618;protein-RNA complex assembly;9.32219241854209e-17!GO:0000502;proteasome complex (sensu Eukaryota);2.5682455262197e-16!GO:0050136;NADH dehydrogenase (quinone) activity;4.32711792539447e-16!GO:0003954;NADH dehydrogenase activity;4.32711792539447e-16!GO:0008137;NADH dehydrogenase (ubiquinone) activity;4.32711792539447e-16!GO:0005794;Golgi apparatus;5.44630335381906e-16!GO:0051603;proteolysis involved in cellular protein catabolic process;7.56583894579988e-16!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);1.38716853485452e-15!GO:0019941;modification-dependent protein catabolic process;1.48104096613846e-15!GO:0043632;modification-dependent macromolecule catabolic process;1.48104096613846e-15!GO:0006511;ubiquitin-dependent protein catabolic process;2.06134322434854e-15!GO:0008134;transcription factor binding;2.25640463202211e-15!GO:0044257;cellular protein catabolic process;2.26961078418679e-15!GO:0006605;protein targeting;2.29427095146593e-15!GO:0005761;mitochondrial ribosome;2.5791930797319e-15!GO:0000313;organellar ribosome;2.5791930797319e-15!GO:0044265;cellular macromolecule catabolic process;3.06310692160215e-15!GO:0043285;biopolymer catabolic process;1.43452758053517e-14!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;1.46985791675679e-14!GO:0032553;ribonucleotide binding;1.5067665041506e-14!GO:0032555;purine ribonucleotide binding;1.5067665041506e-14!GO:0017076;purine nucleotide binding;1.84428810759459e-14!GO:0051082;unfolded protein binding;1.97201972358643e-14!GO:0044248;cellular catabolic process;2.20751981561707e-14!GO:0008135;translation factor activity, nucleic acid binding;2.39801405276668e-14!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);2.55811763045008e-14!GO:0005730;nucleolus;2.67876444380539e-14!GO:0042775;organelle ATP synthesis coupled electron transport;3.8978757893902e-14!GO:0042773;ATP synthesis coupled electron transport;3.8978757893902e-14!GO:0030964;NADH dehydrogenase complex (quinone);4.01113809627859e-14!GO:0045271;respiratory chain complex I;4.01113809627859e-14!GO:0005747;mitochondrial respiratory chain complex I;4.01113809627859e-14!GO:0048193;Golgi vesicle transport;7.25778648258872e-14!GO:0030163;protein catabolic process;9.52488985309263e-14!GO:0000278;mitotic cell cycle;1.26369376410558e-13!GO:0022402;cell cycle process;1.35945114338322e-13!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;1.40719763272458e-13!GO:0009057;macromolecule catabolic process;1.85229473433599e-13!GO:0003676;nucleic acid binding;2.37706151775708e-13!GO:0006732;coenzyme metabolic process;3.66507409539163e-13!GO:0043412;biopolymer modification;1.04096606966988e-12!GO:0016192;vesicle-mediated transport;1.20656491865818e-12!GO:0009055;electron carrier activity;2.25563299673189e-12!GO:0042175;nuclear envelope-endoplasmic reticulum network;3.60584030026726e-12!GO:0005793;ER-Golgi intermediate compartment;6.75336851069431e-12!GO:0012501;programmed cell death;8.11971651758502e-12!GO:0005789;endoplasmic reticulum membrane;1.34662321959526e-11!GO:0006464;protein modification process;1.39668727151066e-11!GO:0005524;ATP binding;2.65503560591665e-11!GO:0000398;nuclear mRNA splicing, via spliceosome;2.85077579515565e-11!GO:0000375;RNA splicing, via transesterification reactions;2.85077579515565e-11!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;2.85077579515565e-11!GO:0006915;apoptosis;3.11889391646571e-11!GO:0032559;adenyl ribonucleotide binding;5.13667805772864e-11!GO:0003743;translation initiation factor activity;6.14508622289587e-11!GO:0030554;adenyl nucleotide binding;8.33802534219178e-11!GO:0006413;translational initiation;8.45263657701106e-11!GO:0008219;cell death;1.07293492889751e-10!GO:0016265;death;1.07293492889751e-10!GO:0016070;RNA metabolic process;1.09344827918641e-10!GO:0009259;ribonucleotide metabolic process;1.24668387231863e-10!GO:0006974;response to DNA damage stimulus;1.32742301917155e-10!GO:0008639;small protein conjugating enzyme activity;2.87317078752285e-10!GO:0019787;small conjugating protein ligase activity;2.96673967860385e-10!GO:0003712;transcription cofactor activity;3.16819417500189e-10!GO:0043687;post-translational protein modification;3.86977549259763e-10!GO:0042254;ribosome biogenesis and assembly;3.92984050349338e-10!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;4.53872611723123e-10!GO:0048523;negative regulation of cellular process;5.84813011545637e-10!GO:0004842;ubiquitin-protein ligase activity;6.18553786349301e-10!GO:0005635;nuclear envelope;8.89497044122971e-10!GO:0006446;regulation of translational initiation;9.86451554279483e-10!GO:0006163;purine nucleotide metabolic process;1.01965698111838e-09!GO:0006913;nucleocytoplasmic transport;1.33033619962758e-09!GO:0009150;purine ribonucleotide metabolic process;1.33033619962758e-09!GO:0009141;nucleoside triphosphate metabolic process;1.33762304446145e-09!GO:0009199;ribonucleoside triphosphate metabolic process;1.43060753335972e-09!GO:0009260;ribonucleotide biosynthetic process;1.54448476246929e-09!GO:0016879;ligase activity, forming carbon-nitrogen bonds;1.76528308252842e-09!GO:0031965;nuclear membrane;1.85000175995092e-09!GO:0042623;ATPase activity, coupled;2.44052092420158e-09!GO:0044453;nuclear membrane part;2.48826422023804e-09!GO:0051169;nuclear transport;2.56831524612136e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;2.94129066435231e-09!GO:0022403;cell cycle phase;3.56970855805973e-09!GO:0009205;purine ribonucleoside triphosphate metabolic process;3.63432089539653e-09!GO:0009144;purine nucleoside triphosphate metabolic process;3.63432089539653e-09!GO:0000087;M phase of mitotic cell cycle;3.96271447627185e-09!GO:0006164;purine nucleotide biosynthetic process;4.02658563553461e-09!GO:0051726;regulation of cell cycle;4.91280607587305e-09!GO:0007067;mitosis;4.91280607587305e-09!GO:0009060;aerobic respiration;4.91280607587305e-09!GO:0009152;purine ribonucleotide biosynthetic process;5.02763703671099e-09!GO:0016887;ATPase activity;5.05615119383125e-09!GO:0006461;protein complex assembly;5.07827814793601e-09!GO:0000074;regulation of progression through cell cycle;5.24021343753696e-09!GO:0008565;protein transporter activity;5.34259880287957e-09!GO:0003924;GTPase activity;6.56893749734727e-09!GO:0016881;acid-amino acid ligase activity;7.03594844432079e-09!GO:0005694;chromosome;7.29427211657886e-09!GO:0045333;cellular respiration;9.85062736072392e-09!GO:0015986;ATP synthesis coupled proton transport;9.88725621494163e-09!GO:0015985;energy coupled proton transport, down electrochemical gradient;9.88725621494163e-09!GO:0016491;oxidoreductase activity;9.9671370036299e-09!GO:0009142;nucleoside triphosphate biosynthetic process;1.05868760718804e-08!GO:0009201;ribonucleoside triphosphate biosynthetic process;1.05868760718804e-08!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;1.0776999059596e-08!GO:0009056;catabolic process;1.1024611605378e-08!GO:0006888;ER to Golgi vesicle-mediated transport;1.1328613128695e-08!GO:0015078;hydrogen ion transmembrane transporter activity;1.55063376811601e-08!GO:0017038;protein import;1.55063376811601e-08!GO:0051276;chromosome organization and biogenesis;1.66343531629954e-08!GO:0030120;vesicle coat;1.71872396210416e-08!GO:0030662;coated vesicle membrane;1.71872396210416e-08!GO:0048519;negative regulation of biological process;2.21958380636761e-08!GO:0006399;tRNA metabolic process;2.22844099796895e-08!GO:0046034;ATP metabolic process;2.30707498996265e-08!GO:0006281;DNA repair;2.53443039826547e-08!GO:0016604;nuclear body;2.66261946738624e-08!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;2.7030030099638e-08!GO:0009145;purine nucleoside triphosphate biosynthetic process;2.7030030099638e-08!GO:0051246;regulation of protein metabolic process;2.78070129917051e-08!GO:0006325;establishment and/or maintenance of chromatin architecture;3.14244637200043e-08!GO:0005768;endosome;3.57896305727646e-08!GO:0044427;chromosomal part;3.75443726070306e-08!GO:0051188;cofactor biosynthetic process;3.97869092540603e-08!GO:0005788;endoplasmic reticulum lumen;5.31153955959145e-08!GO:0051301;cell division;5.357736178894e-08!GO:0019829;cation-transporting ATPase activity;5.47393580059615e-08!GO:0009719;response to endogenous stimulus;6.7130462086965e-08!GO:0006366;transcription from RNA polymerase II promoter;7.75465614003665e-08!GO:0065004;protein-DNA complex assembly;9.3830037828552e-08!GO:0006323;DNA packaging;9.48051696311576e-08!GO:0065002;intracellular protein transport across a membrane;1.11572146012333e-07!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;1.28081460472231e-07!GO:0004812;aminoacyl-tRNA ligase activity;1.28081460472231e-07!GO:0016875;ligase activity, forming carbon-oxygen bonds;1.28081460472231e-07!GO:0006754;ATP biosynthetic process;1.55327454879395e-07!GO:0006753;nucleoside phosphate metabolic process;1.55327454879395e-07!GO:0043067;regulation of programmed cell death;2.0537709495804e-07!GO:0043038;amino acid activation;2.13070094285699e-07!GO:0006418;tRNA aminoacylation for protein translation;2.13070094285699e-07!GO:0043039;tRNA aminoacylation;2.13070094285699e-07!GO:0016469;proton-transporting two-sector ATPase complex;2.25069642384796e-07!GO:0009117;nucleotide metabolic process;2.26253346227708e-07!GO:0051187;cofactor catabolic process;2.37495219206253e-07!GO:0006099;tricarboxylic acid cycle;2.37979565978808e-07!GO:0046356;acetyl-CoA catabolic process;2.37979565978808e-07!GO:0048475;coated membrane;2.40902610591061e-07!GO:0030117;membrane coat;2.40902610591061e-07!GO:0005839;proteasome core complex (sensu Eukaryota);2.42306696378572e-07!GO:0042981;regulation of apoptosis;2.84129142866503e-07!GO:0005643;nuclear pore;3.81323327196052e-07!GO:0008361;regulation of cell size;4.04411082910231e-07!GO:0004386;helicase activity;4.2636217791503e-07!GO:0044431;Golgi apparatus part;4.72016884197849e-07!GO:0016049;cell growth;4.85662507753145e-07!GO:0031324;negative regulation of cellular metabolic process;5.00633543025888e-07!GO:0030532;small nuclear ribonucleoprotein complex;5.04542160452486e-07!GO:0009109;coenzyme catabolic process;6.15021362569724e-07!GO:0006916;anti-apoptosis;6.26873371325125e-07!GO:0016607;nuclear speck;6.36997691526263e-07!GO:0006084;acetyl-CoA metabolic process;6.9389821582028e-07!GO:0000151;ubiquitin ligase complex;7.84003492291244e-07!GO:0006333;chromatin assembly or disassembly;1.08671037854118e-06!GO:0008026;ATP-dependent helicase activity;1.16077159392707e-06!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;1.21848144268665e-06!GO:0015077;monovalent inorganic cation transmembrane transporter activity;1.23942512597783e-06!GO:0032446;protein modification by small protein conjugation;1.27160574977175e-06!GO:0000279;M phase;1.29230633901688e-06!GO:0006091;generation of precursor metabolites and energy;1.34960783588277e-06!GO:0043069;negative regulation of programmed cell death;1.36030709719696e-06!GO:0015630;microtubule cytoskeleton;1.45728969678568e-06!GO:0000785;chromatin;1.55535653043834e-06!GO:0016567;protein ubiquitination;1.65537402404789e-06!GO:0009108;coenzyme biosynthetic process;2.01775501276648e-06!GO:0016023;cytoplasmic membrane-bound vesicle;2.0214878572719e-06!GO:0006364;rRNA processing;2.10326424302356e-06!GO:0031988;membrane-bound vesicle;2.12637768739225e-06!GO:0004298;threonine endopeptidase activity;2.20941909852614e-06!GO:0045259;proton-transporting ATP synthase complex;2.2261423591473e-06!GO:0007005;mitochondrion organization and biogenesis;2.28076968210292e-06!GO:0006752;group transfer coenzyme metabolic process;2.38850057386992e-06!GO:0046930;pore complex;2.81676974084764e-06!GO:0043066;negative regulation of apoptosis;3.09103356263867e-06!GO:0005525;GTP binding;3.23843081028745e-06!GO:0006260;DNA replication;3.4994515379593e-06!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;3.50220286268763e-06!GO:0050794;regulation of cellular process;3.54193975795844e-06!GO:0003697;single-stranded DNA binding;3.56550133949767e-06!GO:0051789;response to protein stimulus;3.8331258441217e-06!GO:0006986;response to unfolded protein;3.8331258441217e-06!GO:0016072;rRNA metabolic process;4.06295573860971e-06!GO:0005798;Golgi-associated vesicle;4.13845545904296e-06!GO:0001558;regulation of cell growth;4.36036777302409e-06!GO:0031252;leading edge;4.36241050970193e-06!GO:0006334;nucleosome assembly;4.89995528121718e-06!GO:0009892;negative regulation of metabolic process;5.55296808208029e-06!GO:0005773;vacuole;5.58907133691597e-06!GO:0005667;transcription factor complex;5.81258572220589e-06!GO:0031982;vesicle;6.13490525329587e-06!GO:0003714;transcription corepressor activity;6.36093749823586e-06!GO:0005762;mitochondrial large ribosomal subunit;6.57475881503602e-06!GO:0000315;organellar large ribosomal subunit;6.57475881503602e-06!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;7.14518812641335e-06!GO:0045786;negative regulation of progression through cell cycle;7.14518812641335e-06!GO:0031410;cytoplasmic vesicle;7.23072181260191e-06!GO:0006793;phosphorus metabolic process;8.54072206842164e-06!GO:0006796;phosphate metabolic process;8.54072206842164e-06!GO:0043566;structure-specific DNA binding;8.69332161918619e-06!GO:0007249;I-kappaB kinase/NF-kappaB cascade;9.93904109153693e-06!GO:0016787;hydrolase activity;1.00123746011553e-05!GO:0006613;cotranslational protein targeting to membrane;1.08979205069485e-05!GO:0016853;isomerase activity;1.15511341505231e-05!GO:0007010;cytoskeleton organization and biogenesis;1.17136060805752e-05!GO:0015980;energy derivation by oxidation of organic compounds;1.1811052312782e-05!GO:0051170;nuclear import;1.24679438427998e-05!GO:0045454;cell redox homeostasis;1.31857714018846e-05!GO:0044440;endosomal part;1.31857714018846e-05!GO:0010008;endosome membrane;1.31857714018846e-05!GO:0031497;chromatin assembly;1.44676821162774e-05!GO:0006606;protein import into nucleus;1.47462916332283e-05!GO:0006403;RNA localization;1.49096582045929e-05!GO:0016564;transcription repressor activity;1.63687399918638e-05!GO:0030036;actin cytoskeleton organization and biogenesis;1.64323683958804e-05!GO:0000245;spliceosome assembly;1.64323683958804e-05!GO:0050657;nucleic acid transport;1.67599461824674e-05!GO:0051236;establishment of RNA localization;1.67599461824674e-05!GO:0050658;RNA transport;1.67599461824674e-05!GO:0016859;cis-trans isomerase activity;2.21396460109951e-05!GO:0016740;transferase activity;2.24126487208655e-05!GO:0016310;phosphorylation;2.27446289902923e-05!GO:0032561;guanyl ribonucleotide binding;2.41695188347769e-05!GO:0019001;guanyl nucleotide binding;2.41695188347769e-05!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;2.55056958018257e-05!GO:0005770;late endosome;2.81071154635213e-05!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;2.82584432569146e-05!GO:0005769;early endosome;3.08419696753028e-05!GO:0000323;lytic vacuole;3.08419696753028e-05!GO:0005764;lysosome;3.08419696753028e-05!GO:0051329;interphase of mitotic cell cycle;3.71947081204249e-05!GO:0043623;cellular protein complex assembly;3.76855477131377e-05!GO:0000139;Golgi membrane;3.81388742492415e-05!GO:0030133;transport vesicle;4.23276661469233e-05!GO:0016481;negative regulation of transcription;5.25833050266868e-05!GO:0008654;phospholipid biosynthetic process;5.27565281062302e-05!GO:0030867;rough endoplasmic reticulum membrane;5.56980306121721e-05!GO:0000314;organellar small ribosomal subunit;6.66014382149841e-05!GO:0005763;mitochondrial small ribosomal subunit;6.66014382149841e-05!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;7.62379698745673e-05!GO:0019843;rRNA binding;7.94244895884414e-05!GO:0006612;protein targeting to membrane;8.12629469904508e-05!GO:0005905;coated pit;9.75024699723928e-05!GO:0016568;chromatin modification;0.000107770136062411!GO:0031968;organelle outer membrane;0.000110130082952027!GO:0003724;RNA helicase activity;0.000110599127092201!GO:0016779;nucleotidyltransferase activity;0.000111549720478866!GO:0003713;transcription coactivator activity;0.000115252408127634!GO:0019867;outer membrane;0.000118110104628018!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.000120797566453234!GO:0051325;interphase;0.000138144103531499!GO:0048522;positive regulation of cellular process;0.000138144103531499!GO:0030029;actin filament-based process;0.000150864374667979!GO:0043021;ribonucleoprotein binding;0.000160209707169742!GO:0005813;centrosome;0.000194749844514079!GO:0008092;cytoskeletal protein binding;0.000202370070644499!GO:0005819;spindle;0.000222575707581941!GO:0033116;ER-Golgi intermediate compartment membrane;0.000225646506795767!GO:0005885;Arp2/3 protein complex;0.000246259694678253!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.000257762416248896!GO:0005048;signal sequence binding;0.000270200599164279!GO:0040008;regulation of growth;0.000274847796743253!GO:0051028;mRNA transport;0.000283191364380043!GO:0030663;COPI coated vesicle membrane;0.000323852302203854!GO:0030126;COPI vesicle coat;0.000323852302203854!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.000327997461625736!GO:0015399;primary active transmembrane transporter activity;0.000327997461625736!GO:0004576;oligosaccharyl transferase activity;0.000341888127077709!GO:0008250;oligosaccharyl transferase complex;0.00035075839000331!GO:0019899;enzyme binding;0.000357051529247731!GO:0050789;regulation of biological process;0.000383023169745867!GO:0005815;microtubule organizing center;0.000391660304473548!GO:0044262;cellular carbohydrate metabolic process;0.000401108150833512!GO:0007243;protein kinase cascade;0.000422468544811568!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000423899454529524!GO:0003899;DNA-directed RNA polymerase activity;0.000435131091577667!GO:0043681;protein import into mitochondrion;0.000437313141928518!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000487085773529847!GO:0009165;nucleotide biosynthetic process;0.000498499001951561!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000506976708582682!GO:0016563;transcription activator activity;0.000515316450530094!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.000522349775582406!GO:0005741;mitochondrial outer membrane;0.00056896292902541!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000643473192847334!GO:0031072;heat shock protein binding;0.00065920619692078!GO:0051427;hormone receptor binding;0.000693726065739584!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00076985327430737!GO:0046474;glycerophospholipid biosynthetic process;0.000868373778161091!GO:0018196;peptidyl-asparagine modification;0.00086924219745028!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00086924219745028!GO:0051920;peroxiredoxin activity;0.000896859589067509!GO:0030137;COPI-coated vesicle;0.000911919818958116!GO:0051168;nuclear export;0.00104464296653209!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.00104464296653209!GO:0030132;clathrin coat of coated pit;0.00119301439457595!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00125673077899512!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00125673077899512!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00125673077899512!GO:0019752;carboxylic acid metabolic process;0.0012706768907109!GO:0006082;organic acid metabolic process;0.00127639442034275!GO:0006626;protein targeting to mitochondrion;0.00129899999177264!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00131786889403757!GO:0035257;nuclear hormone receptor binding;0.00134143929025755!GO:0007050;cell cycle arrest;0.00134846892466982!GO:0043284;biopolymer biosynthetic process;0.00138908171577314!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00156100868103023!GO:0030658;transport vesicle membrane;0.0017034333787892!GO:0008186;RNA-dependent ATPase activity;0.00170924538238479!GO:0006891;intra-Golgi vesicle-mediated transport;0.00172980839435569!GO:0006414;translational elongation;0.00173218166714824!GO:0022890;inorganic cation transmembrane transporter activity;0.00182703859817852!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00182703859817852!GO:0015002;heme-copper terminal oxidase activity;0.00182703859817852!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00182703859817852!GO:0004129;cytochrome-c oxidase activity;0.00182703859817852!GO:0016126;sterol biosynthetic process;0.00197115630694762!GO:0005791;rough endoplasmic reticulum;0.00198741809934086!GO:0051252;regulation of RNA metabolic process;0.00206651431917887!GO:0046489;phosphoinositide biosynthetic process;0.00221646397911363!GO:0007006;mitochondrial membrane organization and biogenesis;0.00228701750832141!GO:0048500;signal recognition particle;0.00240629121109543!GO:0000082;G1/S transition of mitotic cell cycle;0.0024223927378555!GO:0007051;spindle organization and biogenesis;0.0024599011412918!GO:0030176;integral to endoplasmic reticulum membrane;0.00250038263900353!GO:0048471;perinuclear region of cytoplasm;0.00265157277656623!GO:0015992;proton transport;0.00267618798299406!GO:0006383;transcription from RNA polymerase III promoter;0.00276192232282023!GO:0003729;mRNA binding;0.0028204555968802!GO:0065009;regulation of a molecular function;0.00290044642580602!GO:0006818;hydrogen transport;0.00293495858953775!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.00295650636755597!GO:0043492;ATPase activity, coupled to movement of substances;0.00331345688228452!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00345458705819998!GO:0016044;membrane organization and biogenesis;0.00347155891900903!GO:0009967;positive regulation of signal transduction;0.00365567215496275!GO:0043488;regulation of mRNA stability;0.0037596780072251!GO:0043487;regulation of RNA stability;0.0037596780072251!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00389085845197714!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00389085845197714!GO:0030134;ER to Golgi transport vesicle;0.00391004764074571!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.00398807741590749!GO:0006839;mitochondrial transport;0.00401664878141294!GO:0008180;signalosome;0.00415954638985582!GO:0006979;response to oxidative stress;0.00417344585442581!GO:0004004;ATP-dependent RNA helicase activity;0.00426753236817091!GO:0001726;ruffle;0.00430996047556279!GO:0016197;endosome transport;0.00437665604597861!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.00445170983592432!GO:0051087;chaperone binding;0.00451196713635508!GO:0051128;regulation of cellular component organization and biogenesis;0.00480609364439428!GO:0000059;protein import into nucleus, docking;0.00481022602056594!GO:0030127;COPII vesicle coat;0.00485521637733345!GO:0012507;ER to Golgi transport vesicle membrane;0.00485521637733345!GO:0005869;dynactin complex;0.00488055092066108!GO:0030660;Golgi-associated vesicle membrane;0.00490415713685413!GO:0007264;small GTPase mediated signal transduction;0.00494375091632845!GO:0030027;lamellipodium;0.00494375091632845!GO:0030880;RNA polymerase complex;0.00497865826194964!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00499581584784579!GO:0045047;protein targeting to ER;0.00499581584784579!GO:0046483;heterocycle metabolic process;0.00499581584784579!GO:0043433;negative regulation of transcription factor activity;0.00514453181225533!GO:0005874;microtubule;0.00553682088767378!GO:0008632;apoptotic program;0.00564442130368395!GO:0030118;clathrin coat;0.00575970026961521!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.00582073120153295!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.00585465607483182!GO:0000786;nucleosome;0.00587058046201683!GO:0006520;amino acid metabolic process;0.00606635565313551!GO:0017166;vinculin binding;0.00610511840469283!GO:0006595;polyamine metabolic process;0.00613582214756383!GO:0016363;nuclear matrix;0.00622933621520907!GO:0000075;cell cycle checkpoint;0.0062363532683189!GO:0045892;negative regulation of transcription, DNA-dependent;0.00639723650005207!GO:0048487;beta-tubulin binding;0.0064380406494576!GO:0003690;double-stranded DNA binding;0.00645937166870955!GO:0030833;regulation of actin filament polymerization;0.00648054720488189!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00673641431087499!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00696373984701968!GO:0045045;secretory pathway;0.00704812572880693!GO:0008312;7S RNA binding;0.00709801973731782!GO:0006509;membrane protein ectodomain proteolysis;0.00709801973731782!GO:0033619;membrane protein proteolysis;0.00709801973731782!GO:0008022;protein C-terminus binding;0.00731561401386214!GO:0048518;positive regulation of biological process;0.00735553517214154!GO:0003746;translation elongation factor activity;0.00752708515088979!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00763261033780492!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.00763261033780492!GO:0045792;negative regulation of cell size;0.00769891735665282!GO:0004177;aminopeptidase activity;0.00818135578957843!GO:0048468;cell development;0.00829683790332477!GO:0006695;cholesterol biosynthetic process;0.00830090395647376!GO:0051287;NAD binding;0.00830968960826714!GO:0015631;tubulin binding;0.00830968960826714!GO:0006650;glycerophospholipid metabolic process;0.00831006807181823!GO:0005684;U2-dependent spliceosome;0.00835685133013371!GO:0006497;protein amino acid lipidation;0.00838481501897376!GO:0046519;sphingoid metabolic process;0.00851760025425141!GO:0016408;C-acyltransferase activity;0.00885604658549771!GO:0042802;identical protein binding;0.00902172848589496!GO:0030308;negative regulation of cell growth;0.00902377898618557!GO:0030041;actin filament polymerization;0.00902870004084902!GO:0003684;damaged DNA binding;0.00917150093014986!GO:0008139;nuclear localization sequence binding;0.00921651028933153!GO:0000049;tRNA binding;0.00930038753899858!GO:0006261;DNA-dependent DNA replication;0.00935913019297336!GO:0003779;actin binding;0.0095264404389034!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.0097720083337951!GO:0000428;DNA-directed RNA polymerase complex;0.0097720083337951!GO:0008154;actin polymerization and/or depolymerization;0.0098448961561476!GO:0007040;lysosome organization and biogenesis;0.0098448961561476!GO:0019222;regulation of metabolic process;0.00999105198875243!GO:0030659;cytoplasmic vesicle membrane;0.0102597137261196!GO:0019206;nucleoside kinase activity;0.0102718247686704!GO:0008047;enzyme activator activity;0.0103279723430386!GO:0043022;ribosome binding;0.0105896523240065!GO:0016272;prefoldin complex;0.0114174532979699!GO:0008033;tRNA processing;0.0115904715820738!GO:0050662;coenzyme binding;0.0117552527733623!GO:0006402;mRNA catabolic process;0.0119056453899146!GO:0006778;porphyrin metabolic process;0.0119568331078833!GO:0033013;tetrapyrrole metabolic process;0.0119568331078833!GO:0006352;transcription initiation;0.0120999955486812!GO:0005862;muscle thin filament tropomyosin;0.0121023968011518!GO:0006118;electron transport;0.0122325486042664!GO:0019798;procollagen-proline dioxygenase activity;0.0125206437462308!GO:0006740;NADPH regeneration;0.0126354756426119!GO:0006098;pentose-phosphate shunt;0.0126354756426119!GO:0031529;ruffle organization and biogenesis;0.0126354756426119!GO:0030125;clathrin vesicle coat;0.0127298761770984!GO:0030665;clathrin coated vesicle membrane;0.0127298761770984!GO:0007088;regulation of mitosis;0.0128333010155245!GO:0006672;ceramide metabolic process;0.0133305566744434!GO:0006220;pyrimidine nucleotide metabolic process;0.0133669169232265!GO:0046467;membrane lipid biosynthetic process;0.0136445316898501!GO:0051540;metal cluster binding;0.0136998698198863!GO:0051536;iron-sulfur cluster binding;0.0136998698198863!GO:0008610;lipid biosynthetic process;0.0137652627486957!GO:0031902;late endosome membrane;0.0143379821540881!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0144479205391416!GO:0005774;vacuolar membrane;0.0146559221275988!GO:0018193;peptidyl-amino acid modification;0.0147437664400715!GO:0051539;4 iron, 4 sulfur cluster binding;0.0147438764363125!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.0153250743894314!GO:0006790;sulfur metabolic process;0.0156791660186246!GO:0031543;peptidyl-proline dioxygenase activity;0.0158173376000797!GO:0006289;nucleotide-excision repair;0.0163401070244568!GO:0030521;androgen receptor signaling pathway;0.0164327455387987!GO:0007021;tubulin folding;0.0164327455387987!GO:0032984;macromolecular complex disassembly;0.0170370907438107!GO:0044433;cytoplasmic vesicle part;0.0170521451053532!GO:0006506;GPI anchor biosynthetic process;0.0170641130145881!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.0174919138013786!GO:0033043;regulation of organelle organization and biogenesis;0.0174919138013786!GO:0031418;L-ascorbic acid binding;0.0174919138013786!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0175876157313837!GO:0000776;kinetochore;0.0180847154433317!GO:0005832;chaperonin-containing T-complex;0.0185978026196483!GO:0007034;vacuolar transport;0.0186949592279303!GO:0042158;lipoprotein biosynthetic process;0.018738772688983!GO:0043065;positive regulation of apoptosis;0.0188582564866277!GO:0045936;negative regulation of phosphate metabolic process;0.0191719018454803!GO:0043624;cellular protein complex disassembly;0.0193906605461545!GO:0007033;vacuole organization and biogenesis;0.0195180699584486!GO:0005637;nuclear inner membrane;0.0200503121121316!GO:0000775;chromosome, pericentric region;0.0200828193676689!GO:0030145;manganese ion binding;0.0200828193676689!GO:0005583;fibrillar collagen;0.0200950295411256!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0211276460460129!GO:0003711;transcription elongation regulator activity;0.0212892833125287!GO:0000287;magnesium ion binding;0.0213220936348073!GO:0044452;nucleolar part;0.0214227729773475!GO:0031901;early endosome membrane;0.0214459165956918!GO:0008064;regulation of actin polymerization and/or depolymerization;0.0218382672706703!GO:0006984;ER-nuclear signaling pathway;0.0220710129046676!GO:0050811;GABA receptor binding;0.0221972805875343!GO:0032508;DNA duplex unwinding;0.0223138360122444!GO:0032392;DNA geometric change;0.0223138360122444!GO:0043068;positive regulation of programmed cell death;0.0223535823022433!GO:0030119;AP-type membrane coat adaptor complex;0.023558770718986!GO:0005657;replication fork;0.0236193689667999!GO:0030032;lamellipodium biogenesis;0.0242074466988372!GO:0031625;ubiquitin protein ligase binding;0.0243878150053247!GO:0000096;sulfur amino acid metabolic process;0.0246792642932984!GO:0035258;steroid hormone receptor binding;0.0247132799308624!GO:0009112;nucleobase metabolic process;0.0247455430272989!GO:0006401;RNA catabolic process;0.0248021790430384!GO:0006505;GPI anchor metabolic process;0.0253395986462769!GO:0051052;regulation of DNA metabolic process;0.0254210161682443!GO:0003678;DNA helicase activity;0.0254763350029219!GO:0006607;NLS-bearing substrate import into nucleus;0.0254763350029219!GO:0035035;histone acetyltransferase binding;0.0255187520657825!GO:0042168;heme metabolic process;0.025743915488841!GO:0008652;amino acid biosynthetic process;0.0260190064317481!GO:0006611;protein export from nucleus;0.0261648880252672!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0264476697457107!GO:0045941;positive regulation of transcription;0.0266532384844149!GO:0008094;DNA-dependent ATPase activity;0.0269337052998951!GO:0006302;double-strand break repair;0.0269337052998951!GO:0000339;RNA cap binding;0.0273208413320234!GO:0007179;transforming growth factor beta receptor signaling pathway;0.0274368957374319!GO:0043241;protein complex disassembly;0.02768069244183!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0277488779649627!GO:0007160;cell-matrix adhesion;0.0279804704046022!GO:0005801;cis-Golgi network;0.028115805669794!GO:0006007;glucose catabolic process;0.0286603601397009!GO:0048037;cofactor binding;0.0287163847399722!GO:0004674;protein serine/threonine kinase activity;0.028731580386447!GO:0045926;negative regulation of growth;0.0287848506082927!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0291160844511626!GO:0012506;vesicle membrane;0.0293492966576477!GO:0008234;cysteine-type peptidase activity;0.0293492966576477!GO:0031589;cell-substrate adhesion;0.0294444443523005!GO:0030384;phosphoinositide metabolic process;0.0300445712579204!GO:0044437;vacuolar part;0.0307418111826779!GO:0006354;RNA elongation;0.0308440954465488!GO:0000209;protein polyubiquitination;0.0317112010092441!GO:0009116;nucleoside metabolic process;0.0321787047122162!GO:0050681;androgen receptor binding;0.0324959779758682!GO:0022408;negative regulation of cell-cell adhesion;0.0328709121889861!GO:0008168;methyltransferase activity;0.0329362586897173!GO:0030508;thiol-disulfide exchange intermediate activity;0.033123318306657!GO:0033559;unsaturated fatty acid metabolic process;0.033123318306657!GO:0006636;unsaturated fatty acid biosynthetic process;0.033123318306657!GO:0030433;ER-associated protein catabolic process;0.0333591390892037!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0333591390892037!GO:0007093;mitotic cell cycle checkpoint;0.0335821158981598!GO:0006268;DNA unwinding during replication;0.0342635956463852!GO:0006100;tricarboxylic acid cycle intermediate metabolic process;0.0343533980926056!GO:0031124;mRNA 3'-end processing;0.0343968377988638!GO:0003682;chromatin binding;0.0344373760452793!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0344443284378061!GO:0010257;NADH dehydrogenase complex assembly;0.0344443284378061!GO:0033108;mitochondrial respiratory chain complex assembly;0.0344443284378061!GO:0031371;ubiquitin conjugating enzyme complex;0.0344443284378061!GO:0006779;porphyrin biosynthetic process;0.0345690473317161!GO:0033014;tetrapyrrole biosynthetic process;0.0345690473317161!GO:0007346;regulation of progression through mitotic cell cycle;0.0347416031328051!GO:0051045;negative regulation of membrane protein ectodomain proteolysis;0.0347416031328051!GO:0051043;regulation of membrane protein ectodomain proteolysis;0.0347416031328051!GO:0051101;regulation of DNA binding;0.0352716049782294!GO:0000792;heterochromatin;0.0352716049782294!GO:0032940;secretion by cell;0.0353299298284546!GO:0008538;proteasome activator activity;0.0356807811801606!GO:0030503;regulation of cell redox homeostasis;0.0356807811801606!GO:0051098;regulation of binding;0.0357387952086168!GO:0045334;clathrin-coated endocytic vesicle;0.0362027703153585!GO:0006739;NADP metabolic process;0.0369443689104497!GO:0005581;collagen;0.0370436239600425!GO:0007052;mitotic spindle organization and biogenesis;0.0370533379152491!GO:0003923;GPI-anchor transamidase activity;0.0376765605921241!GO:0016255;attachment of GPI anchor to protein;0.0376765605921241!GO:0042765;GPI-anchor transamidase complex;0.0376765605921241!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0378089651726858!GO:0042326;negative regulation of phosphorylation;0.0378414522564564!GO:0008484;sulfuric ester hydrolase activity;0.0378898813133997!GO:0007041;lysosomal transport;0.0381096672747229!GO:0030131;clathrin adaptor complex;0.0387464382596866!GO:0030911;TPR domain binding;0.0391277527895854!GO:0016741;transferase activity, transferring one-carbon groups;0.0392319517196099!GO:0033673;negative regulation of kinase activity;0.0396904469666336!GO:0006469;negative regulation of protein kinase activity;0.0396904469666336!GO:0006635;fatty acid beta-oxidation;0.0399792683296296!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.0406618259723093!GO:0005758;mitochondrial intermembrane space;0.0410784019653459!GO:0032906;transforming growth factor-beta2 production;0.0418245037674212!GO:0032909;regulation of transforming growth factor-beta2 production;0.0418245037674212!GO:0065007;biological regulation;0.0424884328462462!GO:0005765;lysosomal membrane;0.0432706198058464!GO:0045893;positive regulation of transcription, DNA-dependent;0.0433737548955226!GO:0007030;Golgi organization and biogenesis;0.0439106500376578!GO:0001952;regulation of cell-matrix adhesion;0.0448144863887034!GO:0003756;protein disulfide isomerase activity;0.0448845155639823!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0448845155639823!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0453952482902665!GO:0006405;RNA export from nucleus;0.0453952482902665!GO:0003988;acetyl-CoA C-acyltransferase activity;0.046187348601603!GO:0048144;fibroblast proliferation;0.046234459118255!GO:0048145;regulation of fibroblast proliferation;0.046234459118255!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.0464749266953536!GO:0009262;deoxyribonucleotide metabolic process;0.0465124447484163!GO:0005096;GTPase activator activity;0.0466307831774762!GO:0005784;translocon complex;0.0475361669438322!GO:0016251;general RNA polymerase II transcription factor activity;0.0488039036657594!GO:0008320;protein transmembrane transporter activity;0.0488039036657594!GO:0050790;regulation of catalytic activity;0.0488039036657594!GO:0030518;steroid hormone receptor signaling pathway;0.0497447201883393 | |||
|sample_id=11304 | |sample_id=11304 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 100: | ||
|sample_tissue=periodontal ligament | |sample_tissue=periodontal ligament | ||
|top_motifs=FOXL1:2.31666039327;ESR1:2.13693925221;ALX4:2.10206462816;UFEwm:1.93359256392;NKX2-2,8:1.93021240992;TFAP4:1.62308329845;HES1:1.55826227554;PPARG:1.51825903729;GLI1..3:1.48083817522;RXR{A,B,G}:1.47496996927;EVI1:1.41500592452;HMGA1,2:1.38487871744;NR3C1:1.3831348185;AIRE:1.3317826909;TAL1_TCF{3,4,12}:1.29568935438;NANOG{mouse}:1.11563296602;GCM1,2:1.10344371011;PAX1,9:1.09386932023;SRF:1.05648175;NKX3-1:1.00869769882;TP53:1.00323357002;TEAD1:0.937376625488;MYBL2:0.933000382793;HMX1:0.91826570532;ZIC1..3:0.8793399201;GZF1:0.876364289002;ZNF238:0.875652896271;XBP1:0.866811631487;EBF1:0.797553669696;NFIX:0.780196045114;NFE2L1:0.777815931353;KLF4:0.754181935739;NKX3-2:0.734573934299;ZBTB6:0.727074048725;MAFB:0.711098706338;TFCP2:0.70252410623;HAND1,2:0.659351600644;TLX1..3_NFIC{dimer}:0.635671158983;IKZF1:0.621442342609;MTE{core}:0.559012284499;SOX17:0.541014493391;LHX3,4:0.536932567683;MAZ:0.526262817703;POU3F1..4:0.473604530652;ARID5B:0.465972143559;YY1:0.43800268843;MYB:0.432573360989;GFI1B:0.422360205976;TBX4,5:0.386120777938;GTF2I:0.382702658915;HOX{A5,B5}:0.378878667342;GTF2A1,2:0.358560695678;NFATC1..3:0.356412032467;XCPE1{core}:0.34187996815;GFI1:0.321912469912;RXRA_VDR{dimer}:0.299887399887;ATF6:0.291578927301;TFAP2{A,C}:0.287035810348;GATA4:0.275690893168;CDC5L:0.267274919689;TFAP2B:0.246954449675;BACH2:0.196281752992;TOPORS:0.19008976774;EN1,2:0.188737886026;NFE2L2:0.188103677251;HLF:0.181297496488;MTF1:0.151258627265;ZNF423:0.140673618737;MZF1:0.11049271944;SPZ1:0.108762839464;T:0.0730833553718;TFDP1:0.0584771429592;MEF2{A,B,C,D}:0.0464911250358;PDX1:0.0362861837808;PRDM1:0.0331968862345;TBP:0.030466524102;HIC1:0.0285845228778;STAT2,4,6:0.0155778624335;PAX4:0.0118107440472;LEF1_TCF7_TCF7L1,2:-0.00664692371301;bHLH_family:-0.0105305533947;HOX{A4,D4}:-0.012871448446;STAT5{A,B}:-0.0238233535206;PATZ1:-0.0396101746904;IRF1,2:-0.0415482027839;ELK1,4_GABP{A,B1}:-0.0459470516855;FOS_FOS{B,L1}_JUN{B,D}:-0.0529028896951;FOXO1,3,4:-0.0544451790568;FOXA2:-0.0673704121115;ONECUT1,2:-0.0836423777712;HSF1,2:-0.083823202576;AR:-0.0845557944386;ZFP161:-0.0950424412674;DMAP1_NCOR{1,2}_SMARC:-0.0963123815407;EGR1..3:-0.13259566056;NHLH1,2:-0.137657690515;MYFfamily:-0.138947476525;PAX8:-0.140216378678;PRRX1,2:-0.142054542187;NKX2-3_NKX2-5:-0.159314440556;PAX5:-0.163545490084;PITX1..3:-0.168895495012;NR6A1:-0.168959248297;PAX3,7:-0.192045903397;RUNX1..3:-0.233957020589;RREB1:-0.246554867833;SOX5:-0.254780151141;SMAD1..7,9:-0.259689692903;NR5A1,2:-0.26061529196;ZNF148:-0.266198238558;NFE2:-0.26710768968;ZNF143:-0.272615119982;FOSL2:-0.277343491516;E2F1..5:-0.278975875917;HNF1A:-0.285505765452;SP1:-0.2866645203;FOX{I1,J2}:-0.291585033355;CEBPA,B_DDIT3:-0.302967221687;REST:-0.311702771071;CREB1:-0.325798970112;FOXP1:-0.329396310628;POU5F1:-0.354786638231;HOX{A6,A7,B6,B7}:-0.370140224649;DBP:-0.379346428102;RFX1:-0.38096170464;ZNF384:-0.390684036604;NFKB1_REL_RELA:-0.402568558978;MED-1{core}:-0.406698866708;HNF4A_NR2F1,2:-0.409982239527;SREBF1,2:-0.414210157018;BPTF:-0.416550006428;FOXM1:-0.420186613896;AHR_ARNT_ARNT2:-0.435757280271;HOXA9_MEIS1:-0.445475751729;FOXD3:-0.450700204333;ATF5_CREB3:-0.489037550654;ADNP_IRX_SIX_ZHX:-0.4978645338;ZBTB16:-0.520186586734;POU6F1:-0.52167379776;NKX2-1,4:-0.525712340867;RFX2..5_RFXANK_RFXAP:-0.55522255483;ETS1,2:-0.569549172312;SPIB:-0.571165933425;POU1F1:-0.579871663637;IKZF2:-0.584190239058;SPI1:-0.587384432277;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.593862001138;POU2F1..3:-0.603415984313;JUN:-0.603956890257;HIF1A:-0.606043335459;LMO2:-0.618109202506;ELF1,2,4:-0.63032381131;ATF4:-0.635623254031;MYOD1:-0.650637853379;OCT4_SOX2{dimer}:-0.666057368346;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.667915755108;FOXP3:-0.668982840464;SNAI1..3:-0.690445944782;NKX6-1,2:-0.698169870976;RBPJ:-0.702138089994;NRF1:-0.702366443796;NFY{A,B,C}:-0.70791821815;SOX{8,9,10}:-0.710394190428;IRF7:-0.728252202111;PBX1:-0.732532655133;TEF:-0.747346231191;ESRRA:-0.748973511569;SOX2:-0.753520750052;NR1H4:-0.765801448178;NFIL3:-0.783345442254;PAX2:-0.789773810576;EP300:-0.812123808622;FOX{D1,D2}:-0.881910296829;TGIF1:-0.886306892469;PAX6:-0.903906950593;CDX1,2,4:-0.913540614797;BREu{core}:-0.926279875339;ZEB1:-0.93443889827;GATA6:-0.936191851276;RORA:-0.940922776526;HBP1_HMGB_SSRP1_UBTF:-0.943875570991;FOX{F1,F2,J1}:-1.01227720153;FOXN1:-1.11233964234;CRX:-1.12110911023;FOXQ1:-1.17122318514;CUX2:-1.19146705038;ATF2:-1.24529151755;VSX1,2:-1.25059538137;NANOG:-1.25967797002;STAT1,3:-1.28631069904;TLX2:-1.3586808736;ALX1:-1.62557092085 | |top_motifs=FOXL1:2.31666039327;ESR1:2.13693925221;ALX4:2.10206462816;UFEwm:1.93359256392;NKX2-2,8:1.93021240992;TFAP4:1.62308329845;HES1:1.55826227554;PPARG:1.51825903729;GLI1..3:1.48083817522;RXR{A,B,G}:1.47496996927;EVI1:1.41500592452;HMGA1,2:1.38487871744;NR3C1:1.3831348185;AIRE:1.3317826909;TAL1_TCF{3,4,12}:1.29568935438;NANOG{mouse}:1.11563296602;GCM1,2:1.10344371011;PAX1,9:1.09386932023;SRF:1.05648175;NKX3-1:1.00869769882;TP53:1.00323357002;TEAD1:0.937376625488;MYBL2:0.933000382793;HMX1:0.91826570532;ZIC1..3:0.8793399201;GZF1:0.876364289002;ZNF238:0.875652896271;XBP1:0.866811631487;EBF1:0.797553669696;NFIX:0.780196045114;NFE2L1:0.777815931353;KLF4:0.754181935739;NKX3-2:0.734573934299;ZBTB6:0.727074048725;MAFB:0.711098706338;TFCP2:0.70252410623;HAND1,2:0.659351600644;TLX1..3_NFIC{dimer}:0.635671158983;IKZF1:0.621442342609;MTE{core}:0.559012284499;SOX17:0.541014493391;LHX3,4:0.536932567683;MAZ:0.526262817703;POU3F1..4:0.473604530652;ARID5B:0.465972143559;YY1:0.43800268843;MYB:0.432573360989;GFI1B:0.422360205976;TBX4,5:0.386120777938;GTF2I:0.382702658915;HOX{A5,B5}:0.378878667342;GTF2A1,2:0.358560695678;NFATC1..3:0.356412032467;XCPE1{core}:0.34187996815;GFI1:0.321912469912;RXRA_VDR{dimer}:0.299887399887;ATF6:0.291578927301;TFAP2{A,C}:0.287035810348;GATA4:0.275690893168;CDC5L:0.267274919689;TFAP2B:0.246954449675;BACH2:0.196281752992;TOPORS:0.19008976774;EN1,2:0.188737886026;NFE2L2:0.188103677251;HLF:0.181297496488;MTF1:0.151258627265;ZNF423:0.140673618737;MZF1:0.11049271944;SPZ1:0.108762839464;T:0.0730833553718;TFDP1:0.0584771429592;MEF2{A,B,C,D}:0.0464911250358;PDX1:0.0362861837808;PRDM1:0.0331968862345;TBP:0.030466524102;HIC1:0.0285845228778;STAT2,4,6:0.0155778624335;PAX4:0.0118107440472;LEF1_TCF7_TCF7L1,2:-0.00664692371301;bHLH_family:-0.0105305533947;HOX{A4,D4}:-0.012871448446;STAT5{A,B}:-0.0238233535206;PATZ1:-0.0396101746904;IRF1,2:-0.0415482027839;ELK1,4_GABP{A,B1}:-0.0459470516855;FOS_FOS{B,L1}_JUN{B,D}:-0.0529028896951;FOXO1,3,4:-0.0544451790568;FOXA2:-0.0673704121115;ONECUT1,2:-0.0836423777712;HSF1,2:-0.083823202576;AR:-0.0845557944386;ZFP161:-0.0950424412674;DMAP1_NCOR{1,2}_SMARC:-0.0963123815407;EGR1..3:-0.13259566056;NHLH1,2:-0.137657690515;MYFfamily:-0.138947476525;PAX8:-0.140216378678;PRRX1,2:-0.142054542187;NKX2-3_NKX2-5:-0.159314440556;PAX5:-0.163545490084;PITX1..3:-0.168895495012;NR6A1:-0.168959248297;PAX3,7:-0.192045903397;RUNX1..3:-0.233957020589;RREB1:-0.246554867833;SOX5:-0.254780151141;SMAD1..7,9:-0.259689692903;NR5A1,2:-0.26061529196;ZNF148:-0.266198238558;NFE2:-0.26710768968;ZNF143:-0.272615119982;FOSL2:-0.277343491516;E2F1..5:-0.278975875917;HNF1A:-0.285505765452;SP1:-0.2866645203;FOX{I1,J2}:-0.291585033355;CEBPA,B_DDIT3:-0.302967221687;REST:-0.311702771071;CREB1:-0.325798970112;FOXP1:-0.329396310628;POU5F1:-0.354786638231;HOX{A6,A7,B6,B7}:-0.370140224649;DBP:-0.379346428102;RFX1:-0.38096170464;ZNF384:-0.390684036604;NFKB1_REL_RELA:-0.402568558978;MED-1{core}:-0.406698866708;HNF4A_NR2F1,2:-0.409982239527;SREBF1,2:-0.414210157018;BPTF:-0.416550006428;FOXM1:-0.420186613896;AHR_ARNT_ARNT2:-0.435757280271;HOXA9_MEIS1:-0.445475751729;FOXD3:-0.450700204333;ATF5_CREB3:-0.489037550654;ADNP_IRX_SIX_ZHX:-0.4978645338;ZBTB16:-0.520186586734;POU6F1:-0.52167379776;NKX2-1,4:-0.525712340867;RFX2..5_RFXANK_RFXAP:-0.55522255483;ETS1,2:-0.569549172312;SPIB:-0.571165933425;POU1F1:-0.579871663637;IKZF2:-0.584190239058;SPI1:-0.587384432277;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.593862001138;POU2F1..3:-0.603415984313;JUN:-0.603956890257;HIF1A:-0.606043335459;LMO2:-0.618109202506;ELF1,2,4:-0.63032381131;ATF4:-0.635623254031;MYOD1:-0.650637853379;OCT4_SOX2{dimer}:-0.666057368346;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.667915755108;FOXP3:-0.668982840464;SNAI1..3:-0.690445944782;NKX6-1,2:-0.698169870976;RBPJ:-0.702138089994;NRF1:-0.702366443796;NFY{A,B,C}:-0.70791821815;SOX{8,9,10}:-0.710394190428;IRF7:-0.728252202111;PBX1:-0.732532655133;TEF:-0.747346231191;ESRRA:-0.748973511569;SOX2:-0.753520750052;NR1H4:-0.765801448178;NFIL3:-0.783345442254;PAX2:-0.789773810576;EP300:-0.812123808622;FOX{D1,D2}:-0.881910296829;TGIF1:-0.886306892469;PAX6:-0.903906950593;CDX1,2,4:-0.913540614797;BREu{core}:-0.926279875339;ZEB1:-0.93443889827;GATA6:-0.936191851276;RORA:-0.940922776526;HBP1_HMGB_SSRP1_UBTF:-0.943875570991;FOX{F1,F2,J1}:-1.01227720153;FOXN1:-1.11233964234;CRX:-1.12110911023;FOXQ1:-1.17122318514;CUX2:-1.19146705038;ATF2:-1.24529151755;VSX1,2:-1.25059538137;NANOG:-1.25967797002;STAT1,3:-1.28631069904;TLX2:-1.3586808736;ALX1:-1.62557092085 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11304-117B8;search_select_hide=table117:FF:11304-117B8 | |||
}} | }} | ||
Latest revision as of 16:31, 3 June 2020
| Name: | Fibroblast - Periodontal Ligament, donor5 (PL30) |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs11953 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7, 8 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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| Download raw sequence, BAM & CTSS | ||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11953
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11953
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.434 |
| 10 | 10 | 0.179 |
| 100 | 100 | 0.793 |
| 101 | 101 | 0.397 |
| 102 | 102 | 0.199 |
| 103 | 103 | 0.451 |
| 104 | 104 | 0.462 |
| 105 | 105 | 0.328 |
| 106 | 106 | 0.0157 |
| 107 | 107 | 0.0302 |
| 108 | 108 | 0.288 |
| 109 | 109 | 0.187 |
| 11 | 11 | 0.231 |
| 110 | 110 | 0.433 |
| 111 | 111 | 0.816 |
| 112 | 112 | 0.141 |
| 113 | 113 | 0.0168 |
| 114 | 114 | 0.301 |
| 115 | 115 | 0.0214 |
| 116 | 116 | 0.0205 |
| 117 | 117 | 0.613 |
| 118 | 118 | 0.721 |
| 119 | 119 | 0.624 |
| 12 | 12 | 0.161 |
| 120 | 120 | 0.192 |
| 121 | 121 | 0.619 |
| 122 | 122 | 0.049 |
| 123 | 123 | 0.135 |
| 124 | 124 | 0.674 |
| 125 | 125 | 0.135 |
| 126 | 126 | 0.935 |
| 127 | 127 | 0.827 |
| 128 | 128 | 0.0372 |
| 129 | 129 | 0.87 |
| 13 | 13 | 0.923 |
| 130 | 130 | 0.86 |
| 131 | 131 | 0.813 |
| 132 | 132 | 0.537 |
| 133 | 133 | 0.549 |
| 134 | 134 | 0.169 |
| 135 | 135 | 0.648 |
| 136 | 136 | 0.265 |
| 137 | 137 | 0.319 |
| 138 | 138 | 0.624 |
| 139 | 139 | 0.909 |
| 14 | 14 | 0.531 |
| 140 | 140 | 0.425 |
| 141 | 141 | 0.269 |
| 142 | 142 | 0.842 |
| 143 | 143 | 0.642 |
| 144 | 144 | 0.74 |
| 145 | 145 | 0.399 |
| 146 | 146 | 0.906 |
| 147 | 147 | 0.125 |
| 148 | 148 | 0.983 |
| 149 | 149 | 0.047 |
| 15 | 15 | 0.714 |
| 150 | 150 | 0.153 |
| 151 | 151 | 0.634 |
| 152 | 152 | 0.00347 |
| 153 | 153 | 0.987 |
| 154 | 154 | 0.331 |
| 155 | 155 | 0.0188 |
| 156 | 156 | 0.884 |
| 157 | 157 | 0.153 |
| 158 | 158 | 0.00363 |
| 159 | 159 | 0.317 |
| 16 | 16 | 0.019 |
| 160 | 160 | 0.261 |
| 161 | 161 | 0.729 |
| 162 | 162 | 0.645 |
| 163 | 163 | 0.978 |
| 164 | 164 | 0.217 |
| 165 | 165 | 0.314 |
| 166 | 166 | 0.0345 |
| 167 | 167 | 0.744 |
| 168 | 168 | 0.966 |
| 169 | 169 | 0.0409 |
| 17 | 17 | 0.232 |
| 18 | 18 | 0.128 |
| 19 | 19 | 0.00416 |
| 2 | 2 | 0.316 |
| 20 | 20 | 0.545 |
| 21 | 21 | 0.0719 |
| 22 | 22 | 0.21 |
| 23 | 23 | 0.576 |
| 24 | 24 | 0.987 |
| 25 | 25 | 0.793 |
| 26 | 26 | 0.13 |
| 27 | 27 | 0.686 |
| 28 | 28 | 0.283 |
| 29 | 29 | 0.491 |
| 3 | 3 | 0.296 |
| 30 | 30 | 0.633 |
| 31 | 31 | 0.602 |
| 32 | 32 | 1.19574e-16 |
| 33 | 33 | 0.239 |
| 34 | 34 | 0.801 |
| 35 | 35 | 0.994 |
| 36 | 36 | 0.0645 |
| 37 | 37 | 0.0332 |
| 38 | 38 | 0.677 |
| 39 | 39 | 0.373 |
| 4 | 4 | 0.713 |
| 40 | 40 | 0.893 |
| 41 | 41 | 0.862 |
| 42 | 42 | 0.914 |
| 43 | 43 | 0.293 |
| 44 | 44 | 0.112 |
| 45 | 45 | 0.994 |
| 46 | 46 | 0.123 |
| 47 | 47 | 0.524 |
| 48 | 48 | 0.568 |
| 49 | 49 | 0.638 |
| 5 | 5 | 0.714 |
| 50 | 50 | 0.633 |
| 51 | 51 | 0.735 |
| 52 | 52 | 0.357 |
| 53 | 53 | 0.556 |
| 54 | 54 | 0.512 |
| 55 | 55 | 0.0695 |
| 56 | 56 | 0.984 |
| 57 | 57 | 0.553 |
| 58 | 58 | 0.737 |
| 59 | 59 | 0.00464 |
| 6 | 6 | 0.36 |
| 60 | 60 | 0.366 |
| 61 | 61 | 0.842 |
| 62 | 62 | 0.475 |
| 63 | 63 | 0.166 |
| 64 | 64 | 0.856 |
| 65 | 65 | 0.263 |
| 66 | 66 | 0.838 |
| 67 | 67 | 0.627 |
| 68 | 68 | 0.983 |
| 69 | 69 | 0.222 |
| 7 | 7 | 0.488 |
| 70 | 70 | 0.14 |
| 71 | 71 | 0.0959 |
| 72 | 72 | 0.372 |
| 73 | 73 | 0.00354 |
| 74 | 74 | 0.284 |
| 75 | 75 | 0.414 |
| 76 | 76 | 0.564 |
| 77 | 77 | 0.0109 |
| 78 | 78 | 0.645 |
| 79 | 79 | 0.0016 |
| 8 | 8 | 0.0322 |
| 80 | 80 | 0.162 |
| 81 | 81 | 0.959 |
| 82 | 82 | 0.208 |
| 83 | 83 | 0.293 |
| 84 | 84 | 0.76 |
| 85 | 85 | 0.0291 |
| 86 | 86 | 0.295 |
| 87 | 87 | 0.0212 |
| 88 | 88 | 0.261 |
| 89 | 89 | 0.0175 |
| 9 | 9 | 0.699 |
| 90 | 90 | 0.631 |
| 91 | 91 | 0.88 |
| 92 | 92 | 0.33 |
| 93 | 93 | 0.539 |
| 94 | 94 | 0.676 |
| 95 | 95 | 0.187 |
| 96 | 96 | 0.748 |
| 97 | 97 | 0.901 |
| 98 | 98 | 0.445 |
| 99 | 99 | 0.00644 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11953
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000067 human fibroblast of periodontium sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0000057 (fibroblast)
0002556 (fibroblast of periodontium)
UBERON: Anatomy
0000468 (multi-cellular organism)
0002384 (connective tissue)
0000033 (head)
0000479 (tissue)
0001007 (digestive system)
0004121 (ectoderm-derived structure)
0004119 (endoderm-derived structure)
0010314 (structure with developmental contribution from neural crest)
0011216 (organ system subdivision)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0001444 (subdivision of head)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000075 (subdivision of skeletal system)
0010317 (germ layer / neural crest derived structure)
0001555 (digestive tract)
0001758 (periodontium)
0000153 (anterior region of body)
0007811 (craniocervical region)
0002204 (musculoskeletal system)
0001434 (skeletal system)
0000165 (mouth)
0003672 (dentition)
0011137 (axial skeletal system)
0010323 (cranial skeletal system)
0003129 (skull)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000057 (fibroblast sample)
0000001 (sample)
0000067 (human fibroblast of periodontium sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)
