FF:10181-103D1: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet= | |DRA_sample_Accession=CAGE@SAMD00005376 | ||
|accession_numbers=CAGE;DRX008727;DRR009599;DRZ001024;DRZ002409;DRZ012374;DRZ013759 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0002240,UBERON:0000479,UBERON:0004121,UBERON:0010314,UBERON:0011216,UBERON:0000062,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003103,UBERON:0000489,UBERON:0005174,UBERON:0010317,UBERON:0001017,UBERON:0001016,UBERON:0001137 | |||
|ancestors_in_cell_lineage_facet= | |ancestors_in_cell_lineage_facet= | ||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000101,FF:0000001,FF:0000998,FF:0000004,FF:0010159 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score= | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 42: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/spinal%2520cord%2520-%2520adult%252c%2520donor10196.CNhs13807.10181-103D1.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/spinal%2520cord%2520-%2520adult%252c%2520donor10196.CNhs13807.10181-103D1.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/spinal%2520cord%2520-%2520adult%252c%2520donor10196.CNhs13807.10181-103D1.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/spinal%2520cord%2520-%2520adult%252c%2520donor10196.CNhs13807.10181-103D1.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/spinal%2520cord%2520-%2520adult%252c%2520donor10196.CNhs13807.10181-103D1.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10181-103D1 | |id=FF:10181-103D1 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0010159 | ||
|is_obsolete= | |||
|library_id=CNhs13807 | |||
|library_id_phase_based=2:CNhs13807 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10181 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10181 | |||
|name=spinal cord - adult, donor10196 | |name=spinal cord - adult, donor10196 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 44: | Line 63: | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq= | |profile_srnaseq= | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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| |||
|rna_box=103 | |rna_box=103 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
| Line 57: | Line 79: | ||
|rna_weight_ug=28.2582 | |rna_weight_ug=28.2582 | ||
|sample_age=60 | |sample_age=60 | ||
|sample_category=tissues | |||
|sample_cell_catalog=NA | |sample_cell_catalog=NA | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 92: | ||
|sample_ethnicity= | |sample_ethnicity= | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;3.80973977121773e-276!GO:0005737;cytoplasm;1.0745495559209e-152!GO:0044444;cytoplasmic part;2.31880384261806e-102!GO:0043226;organelle;2.54750236723551e-101!GO:0043229;intracellular organelle;6.89221699784332e-101!GO:0043227;membrane-bound organelle;2.44489543471908e-92!GO:0043231;intracellular membrane-bound organelle;3.52587499694737e-92!GO:0005515;protein binding;7.810016557761e-69!GO:0044422;organelle part;2.00526258715141e-62!GO:0044446;intracellular organelle part;2.01635276532689e-61!GO:0032991;macromolecular complex;7.60496971574387e-57!GO:0016043;cellular component organization and biogenesis;2.43414441663146e-46!GO:0030529;ribonucleoprotein complex;6.18782937209054e-45!GO:0003723;RNA binding;4.69785736732807e-41!GO:0005739;mitochondrion;9.1958483791627e-39!GO:0033036;macromolecule localization;6.49728759669643e-36!GO:0015031;protein transport;2.28699518472222e-34!GO:0031090;organelle membrane;3.59047319373979e-34!GO:0008104;protein localization;9.26444329816542e-33!GO:0045184;establishment of protein localization;6.11447270304659e-32!GO:0044238;primary metabolic process;1.37754326043191e-30!GO:0043234;protein complex;1.02116092493633e-29!GO:0043233;organelle lumen;1.58969729400494e-29!GO:0031974;membrane-enclosed lumen;1.58969729400494e-29!GO:0044237;cellular metabolic process;2.39984300212424e-29!GO:0046907;intracellular transport;3.96362804024972e-29!GO:0044428;nuclear part;2.62143363437315e-28!GO:0044429;mitochondrial part;7.14558860068084e-28!GO:0016071;mRNA metabolic process;5.07857220532506e-27!GO:0005829;cytosol;6.27550913689084e-27!GO:0031975;envelope;4.74837141500004e-26!GO:0031967;organelle envelope;6.43905758579907e-26!GO:0043170;macromolecule metabolic process;6.54038083939626e-26!GO:0005840;ribosome;1.05784344940186e-24!GO:0008380;RNA splicing;1.2837014271625e-24!GO:0019538;protein metabolic process;6.03854467153755e-24!GO:0051641;cellular localization;1.24423610819794e-23!GO:0051649;establishment of cellular localization;1.62247570173778e-23!GO:0006396;RNA processing;2.60368487269949e-23!GO:0006412;translation;5.43909663821001e-23!GO:0006397;mRNA processing;1.04779925022496e-22!GO:0005634;nucleus;1.10591800892799e-22!GO:0006886;intracellular protein transport;2.39528105071107e-22!GO:0016192;vesicle-mediated transport;5.99119094492616e-22!GO:0009058;biosynthetic process;2.04789961370702e-21!GO:0044260;cellular macromolecule metabolic process;3.86365389947155e-21!GO:0003735;structural constituent of ribosome;9.72644338122102e-21!GO:0044267;cellular protein metabolic process;4.90809906585039e-20!GO:0065003;macromolecular complex assembly;2.2507842167138e-19!GO:0005740;mitochondrial envelope;2.64515804940784e-19!GO:0006119;oxidative phosphorylation;4.90641358301383e-19!GO:0033279;ribosomal subunit;8.25997369162823e-19!GO:0031966;mitochondrial membrane;9.25930092581916e-19!GO:0019866;organelle inner membrane;2.31282401271552e-18!GO:0009059;macromolecule biosynthetic process;5.27163364182982e-18!GO:0022607;cellular component assembly;1.9823400807359e-17!GO:0006996;organelle organization and biogenesis;2.72575167506754e-17!GO:0005681;spliceosome;2.84242809145497e-17!GO:0044249;cellular biosynthetic process;3.81990184332427e-17!GO:0005743;mitochondrial inner membrane;3.81990184332427e-17!GO:0031982;vesicle;1.20064282475819e-16!GO:0005794;Golgi apparatus;1.20983114209795e-16!GO:0031981;nuclear lumen;3.16490699752955e-16!GO:0031410;cytoplasmic vesicle;6.90622482516385e-16!GO:0031988;membrane-bound vesicle;3.53139535300259e-15!GO:0044455;mitochondrial membrane part;8.48848574862943e-15!GO:0005830;cytosolic ribosome (sensu Eukaryota);9.76009524802093e-15!GO:0048770;pigment granule;1.28677134607464e-14!GO:0042470;melanosome;1.28677134607464e-14!GO:0016023;cytoplasmic membrane-bound vesicle;1.68942906308366e-14!GO:0044445;cytosolic part;5.28653547450644e-14!GO:0005746;mitochondrial respiratory chain;6.33819408756536e-14!GO:0000166;nucleotide binding;6.86557100757324e-14!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;7.4992247376341e-14!GO:0050136;NADH dehydrogenase (quinone) activity;7.7391041370809e-14!GO:0003954;NADH dehydrogenase activity;7.7391041370809e-14!GO:0008137;NADH dehydrogenase (ubiquinone) activity;7.7391041370809e-14!GO:0012505;endomembrane system;1.07271222699934e-13!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;4.1131350226075e-13!GO:0016462;pyrophosphatase activity;5.4178065368204e-13!GO:0016817;hydrolase activity, acting on acid anhydrides;5.42242064788401e-13!GO:0010467;gene expression;1.03108188173966e-12!GO:0043283;biopolymer metabolic process;1.49753257586329e-12!GO:0017111;nucleoside-triphosphatase activity;3.28302687647877e-12!GO:0006457;protein folding;4.81871277583648e-12!GO:0022613;ribonucleoprotein complex biogenesis and assembly;5.38953967027301e-12!GO:0030964;NADH dehydrogenase complex (quinone);6.57423194908674e-12!GO:0045271;respiratory chain complex I;6.57423194908674e-12!GO:0005747;mitochondrial respiratory chain complex I;6.57423194908674e-12!GO:0043228;non-membrane-bound organelle;1.64944028805611e-11!GO:0043232;intracellular non-membrane-bound organelle;1.64944028805611e-11!GO:0042775;organelle ATP synthesis coupled electron transport;1.64944028805611e-11!GO:0042773;ATP synthesis coupled electron transport;1.64944028805611e-11!GO:0022618;protein-RNA complex assembly;1.77922414243977e-11!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;1.90508418185832e-11!GO:0031980;mitochondrial lumen;5.31913853474031e-11!GO:0005759;mitochondrial matrix;5.31913853474031e-11!GO:0005783;endoplasmic reticulum;9.1096493470172e-11!GO:0005654;nucleoplasm;9.23646565469868e-11!GO:0008092;cytoskeletal protein binding;1.25725495612693e-10!GO:0048193;Golgi vesicle transport;1.26601915579972e-10!GO:0015935;small ribosomal subunit;1.38517585668059e-10!GO:0016874;ligase activity;2.03301939590158e-10!GO:0051603;proteolysis involved in cellular protein catabolic process;2.28588495402569e-10!GO:0008134;transcription factor binding;2.57392114663395e-10!GO:0006511;ubiquitin-dependent protein catabolic process;2.96832685124397e-10!GO:0019941;modification-dependent protein catabolic process;3.7678284161825e-10!GO:0043632;modification-dependent macromolecule catabolic process;3.7678284161825e-10!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;3.9198794551716e-10!GO:0044257;cellular protein catabolic process;3.9198794551716e-10!GO:0006605;protein targeting;6.29243594079663e-10!GO:0044451;nucleoplasm part;1.16390893370675e-09!GO:0003924;GTPase activity;1.46517119333539e-09!GO:0044265;cellular macromolecule catabolic process;1.60171840656227e-09!GO:0051082;unfolded protein binding;1.72547808487029e-09!GO:0016044;membrane organization and biogenesis;1.95201493706419e-09!GO:0000502;proteasome complex (sensu Eukaryota);2.01137857610788e-09!GO:0008135;translation factor activity, nucleic acid binding;2.98885521092646e-09!GO:0032553;ribonucleotide binding;2.99082711243823e-09!GO:0032555;purine ribonucleotide binding;2.99082711243823e-09!GO:0008565;protein transporter activity;3.15264880676745e-09!GO:0015934;large ribosomal subunit;4.32187000006821e-09!GO:0006512;ubiquitin cycle;5.25343725244068e-09!GO:0005768;endosome;8.0909239019604e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;8.99789506730948e-09!GO:0017076;purine nucleotide binding;1.19382467421992e-08!GO:0005525;GTP binding;1.61136561378719e-08!GO:0048523;negative regulation of cellular process;2.34878522962303e-08!GO:0007010;cytoskeleton organization and biogenesis;3.6659627043033e-08!GO:0000398;nuclear mRNA splicing, via spliceosome;4.20929150335989e-08!GO:0000375;RNA splicing, via transesterification reactions;4.20929150335989e-08!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;4.20929150335989e-08!GO:0044248;cellular catabolic process;4.31334476434215e-08!GO:0030036;actin cytoskeleton organization and biogenesis;5.2379104404874e-08!GO:0030695;GTPase regulator activity;6.02011044726121e-08!GO:0043285;biopolymer catabolic process;6.24601125846249e-08!GO:0006461;protein complex assembly;7.18810322549612e-08!GO:0016604;nuclear body;7.8765365153056e-08!GO:0007264;small GTPase mediated signal transduction;1.11455511655039e-07!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);1.13615733904534e-07!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);1.46529548406767e-07!GO:0006446;regulation of translational initiation;1.46858737920785e-07!GO:0051186;cofactor metabolic process;1.54145107624775e-07!GO:0019829;cation-transporting ATPase activity;1.59431308917499e-07!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.88177532821403e-07!GO:0016607;nuclear speck;1.88177532821403e-07!GO:0043412;biopolymer modification;1.919146232312e-07!GO:0005635;nuclear envelope;2.00024817807877e-07!GO:0006413;translational initiation;2.05147305078034e-07!GO:0045045;secretory pathway;2.06357112815084e-07!GO:0030163;protein catabolic process;2.5781827787954e-07!GO:0006464;protein modification process;3.22863469806884e-07!GO:0032561;guanyl ribonucleotide binding;3.26136990364752e-07!GO:0019001;guanyl nucleotide binding;3.26136990364752e-07!GO:0006913;nucleocytoplasmic transport;3.29852134468034e-07!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;3.58745490415457e-07!GO:0003743;translation initiation factor activity;3.76729675588938e-07!GO:0031965;nuclear membrane;3.81117305952406e-07!GO:0030029;actin filament-based process;4.21006458240471e-07!GO:0048519;negative regulation of biological process;5.57485227742163e-07!GO:0051169;nuclear transport;6.12717830334003e-07!GO:0043687;post-translational protein modification;6.91335750706319e-07!GO:0015986;ATP synthesis coupled proton transport;7.62465203105617e-07!GO:0015985;energy coupled proton transport, down electrochemical gradient;7.62465203105617e-07!GO:0008219;cell death;1.11726377896545e-06!GO:0016265;death;1.11726377896545e-06!GO:0006793;phosphorus metabolic process;1.13612042488732e-06!GO:0006796;phosphate metabolic process;1.13612042488732e-06!GO:0044431;Golgi apparatus part;1.18154612628409e-06!GO:0031252;leading edge;1.4033681187384e-06!GO:0005761;mitochondrial ribosome;1.60582750317841e-06!GO:0000313;organellar ribosome;1.60582750317841e-06!GO:0012501;programmed cell death;1.64655407110413e-06!GO:0009057;macromolecule catabolic process;1.69952473389588e-06!GO:0048471;perinuclear region of cytoplasm;1.9296261117318e-06!GO:0006915;apoptosis;1.94419490510436e-06!GO:0006897;endocytosis;2.55850314845245e-06!GO:0010324;membrane invagination;2.55850314845245e-06!GO:0015631;tubulin binding;2.68338578935619e-06!GO:0005083;small GTPase regulator activity;2.81946026147205e-06!GO:0044432;endoplasmic reticulum part;3.12517812369022e-06!GO:0005730;nucleolus;3.21793547599543e-06!GO:0019899;enzyme binding;4.12751681502263e-06!GO:0009060;aerobic respiration;5.97847378463372e-06!GO:0051246;regulation of protein metabolic process;6.24271343274722e-06!GO:0008639;small protein conjugating enzyme activity;6.39044356044821e-06!GO:0030135;coated vesicle;6.95199976167844e-06!GO:0009055;electron carrier activity;7.65909523037956e-06!GO:0003779;actin binding;7.78119077209129e-06!GO:0048475;coated membrane;7.96814861231176e-06!GO:0030117;membrane coat;7.96814861231176e-06!GO:0017038;protein import;8.2404096766546e-06!GO:0051179;localization;8.77702497405758e-06!GO:0005905;coated pit;9.54460769355635e-06!GO:0000902;cell morphogenesis;9.72138103352303e-06!GO:0032989;cellular structure morphogenesis;9.72138103352303e-06!GO:0004842;ubiquitin-protein ligase activity;9.73635025799683e-06!GO:0045333;cellular respiration;1.04974266565345e-05!GO:0016469;proton-transporting two-sector ATPase complex;1.33477911334466e-05!GO:0006810;transport;1.49122367039158e-05!GO:0046034;ATP metabolic process;1.63844090081687e-05!GO:0019787;small conjugating protein ligase activity;2.07708288173142e-05!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;2.19514779721612e-05!GO:0006754;ATP biosynthetic process;2.26112736815077e-05!GO:0006753;nucleoside phosphate metabolic process;2.26112736815077e-05!GO:0032940;secretion by cell;2.49916202227889e-05!GO:0005769;early endosome;2.65812484940163e-05!GO:0006732;coenzyme metabolic process;2.74963630314133e-05!GO:0044440;endosomal part;2.87571167741222e-05!GO:0010008;endosome membrane;2.87571167741222e-05!GO:0009150;purine ribonucleotide metabolic process;2.98447360560868e-05!GO:0003712;transcription cofactor activity;2.9909881966225e-05!GO:0006163;purine nucleotide metabolic process;3.02102448240616e-05!GO:0016564;transcription repressor activity;3.0638155334802e-05!GO:0009205;purine ribonucleoside triphosphate metabolic process;3.0638155334802e-05!GO:0009144;purine nucleoside triphosphate metabolic process;3.0638155334802e-05!GO:0045259;proton-transporting ATP synthase complex;3.49652570226427e-05!GO:0044453;nuclear membrane part;3.50717717122111e-05!GO:0009199;ribonucleoside triphosphate metabolic process;3.67793297646761e-05!GO:0009109;coenzyme catabolic process;3.67793297646761e-05!GO:0015630;microtubule cytoskeleton;3.72124567874309e-05!GO:0006099;tricarboxylic acid cycle;3.72124567874309e-05!GO:0046356;acetyl-CoA catabolic process;3.72124567874309e-05!GO:0009141;nucleoside triphosphate metabolic process;3.79439283057588e-05!GO:0009152;purine ribonucleotide biosynthetic process;3.89407561507456e-05!GO:0005770;late endosome;3.99978854337463e-05!GO:0006164;purine nucleotide biosynthetic process;4.15745390896947e-05!GO:0000139;Golgi membrane;4.55188453009367e-05!GO:0042175;nuclear envelope-endoplasmic reticulum network;4.91069802106295e-05!GO:0030120;vesicle coat;4.9684769964525e-05!GO:0030662;coated vesicle membrane;4.9684769964525e-05!GO:0015078;hydrogen ion transmembrane transporter activity;5.56113784881218e-05!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;5.56113784881218e-05!GO:0009145;purine nucleoside triphosphate biosynthetic process;5.56113784881218e-05!GO:0005789;endoplasmic reticulum membrane;5.72052550481029e-05!GO:0008047;enzyme activator activity;6.07329690122242e-05!GO:0000245;spliceosome assembly;6.2513344428308e-05!GO:0009259;ribonucleotide metabolic process;6.37434902120238e-05!GO:0009142;nucleoside triphosphate biosynthetic process;6.69943201761392e-05!GO:0009201;ribonucleoside triphosphate biosynthetic process;6.69943201761392e-05!GO:0051187;cofactor catabolic process;7.07100408729329e-05!GO:0006366;transcription from RNA polymerase II promoter;7.37712846748727e-05!GO:0005096;GTPase activator activity;8.00129682456395e-05!GO:0045786;negative regulation of progression through cell cycle;8.29828736492093e-05!GO:0008017;microtubule binding;9.01163405117197e-05!GO:0016310;phosphorylation;0.00010153186390416!GO:0048468;cell development;0.000110453507057936!GO:0043069;negative regulation of programmed cell death;0.000113461107946743!GO:0015077;monovalent inorganic cation transmembrane transporter activity;0.000115719017850737!GO:0006403;RNA localization;0.00011779874979541!GO:0016070;RNA metabolic process;0.000119413177280732!GO:0032559;adenyl ribonucleotide binding;0.000120190370565914!GO:0005793;ER-Golgi intermediate compartment;0.00012113026842089!GO:0005773;vacuole;0.000125196866714708!GO:0043066;negative regulation of apoptosis;0.000128209903942361!GO:0050657;nucleic acid transport;0.000128209903942361!GO:0051236;establishment of RNA localization;0.000128209903942361!GO:0050658;RNA transport;0.000128209903942361!GO:0005643;nuclear pore;0.000141040317085304!GO:0016879;ligase activity, forming carbon-nitrogen bonds;0.000151972121865065!GO:0008287;protein serine/threonine phosphatase complex;0.000166680449947054!GO:0016881;acid-amino acid ligase activity;0.000167811323322263!GO:0016887;ATPase activity;0.000171724801039185!GO:0009260;ribonucleotide biosynthetic process;0.000182954293816024!GO:0051128;regulation of cellular component organization and biogenesis;0.000185029827417421!GO:0006606;protein import into nucleus;0.000185453252274281!GO:0009056;catabolic process;0.000186210695602222!GO:0051170;nuclear import;0.000208137807035636!GO:0019717;synaptosome;0.000210897264723847!GO:0050789;regulation of biological process;0.000225571330145194!GO:0042623;ATPase activity, coupled;0.000226452096609415!GO:0005524;ATP binding;0.0002266922758116!GO:0003714;transcription corepressor activity;0.000258983205559424!GO:0006084;acetyl-CoA metabolic process;0.000274729926369293!GO:0051234;establishment of localization;0.000297162019938625!GO:0005798;Golgi-associated vesicle;0.000321593208170259!GO:0007399;nervous system development;0.000321662406757028!GO:0050794;regulation of cellular process;0.0003358315309738!GO:0006613;cotranslational protein targeting to membrane;0.000336522628703125!GO:0030554;adenyl nucleotide binding;0.000342769759815402!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.000350645239749355!GO:0006916;anti-apoptosis;0.000398364361494995!GO:0003676;nucleic acid binding;0.000398882210638536!GO:0000323;lytic vacuole;0.000438926038647842!GO:0005764;lysosome;0.000438926038647842!GO:0006325;establishment and/or maintenance of chromatin architecture;0.000442765734620551!GO:0006888;ER to Golgi vesicle-mediated transport;0.000442765734620551!GO:0008361;regulation of cell size;0.000467661834099746!GO:0031901;early endosome membrane;0.000487860386466687!GO:0007242;intracellular signaling cascade;0.000522441309598618!GO:0030532;small nuclear ribonucleoprotein complex;0.000522441309598618!GO:0006607;NLS-bearing substrate import into nucleus;0.0005409848398168!GO:0051188;cofactor biosynthetic process;0.000570113518101057!GO:0005874;microtubule;0.000579482445737751!GO:0030027;lamellipodium;0.000606692155551584!GO:0000159;protein phosphatase type 2A complex;0.000626878416708361!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.000627057238369634!GO:0015399;primary active transmembrane transporter activity;0.000627057238369634!GO:0032446;protein modification by small protein conjugation;0.000654221185294191!GO:0030133;transport vesicle;0.000684505885561199!GO:0003729;mRNA binding;0.000700754476645522!GO:0008654;phospholipid biosynthetic process;0.000705342112894542!GO:0016049;cell growth;0.000730739919682534!GO:0016197;endosome transport;0.000830718406317685!GO:0007265;Ras protein signal transduction;0.000832668190479625!GO:0005839;proteasome core complex (sensu Eukaryota);0.000834847804658615!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;0.000834847804658615!GO:0030867;rough endoplasmic reticulum membrane;0.000890887700870225!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.000957857841879529!GO:0009966;regulation of signal transduction;0.000957857841879529!GO:0006259;DNA metabolic process;0.000975936719352934!GO:0016126;sterol biosynthetic process;0.00102901228824428!GO:0006323;DNA packaging;0.00103968300541421!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;0.00107543960453282!GO:0004812;aminoacyl-tRNA ligase activity;0.00107543960453282!GO:0016875;ligase activity, forming carbon-oxygen bonds;0.00107543960453282!GO:0031072;heat shock protein binding;0.00107842924249456!GO:0043566;structure-specific DNA binding;0.00108394840569517!GO:0016567;protein ubiquitination;0.00110696740633739!GO:0051028;mRNA transport;0.00113291048746325!GO:0006752;group transfer coenzyme metabolic process;0.0013124154801785!GO:0005791;rough endoplasmic reticulum;0.00147147401505475!GO:0043038;amino acid activation;0.00150766303683276!GO:0006418;tRNA aminoacylation for protein translation;0.00150766303683276!GO:0043039;tRNA aminoacylation;0.00150766303683276!GO:0000151;ubiquitin ligase complex;0.00151183355600207!GO:0046467;membrane lipid biosynthetic process;0.00158116665210645!GO:0007243;protein kinase cascade;0.00190242122235748!GO:0016791;phosphoric monoester hydrolase activity;0.00190242122235748!GO:0008601;protein phosphatase type 2A regulator activity;0.00193428006929311!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.00199421862444445!GO:0005741;mitochondrial outer membrane;0.00211409926570867!GO:0043492;ATPase activity, coupled to movement of substances;0.00211409926570867!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00220778259740339!GO:0006650;glycerophospholipid metabolic process;0.00227893548525146!GO:0005100;Rho GTPase activator activity;0.00231438864460277!GO:0043209;myelin sheath;0.00233763680276754!GO:0015980;energy derivation by oxidation of organic compounds;0.00238169682158192!GO:0004721;phosphoprotein phosphatase activity;0.00239683723082649!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00241999405322334!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00253078518330762!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00253078518330762!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00253078518330762!GO:0030118;clathrin coat;0.00256946783643363!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.00257453526371578!GO:0030136;clathrin-coated vesicle;0.00278740575241963!GO:0007019;microtubule depolymerization;0.00290260932270169!GO:0003724;RNA helicase activity;0.0029619613715643!GO:0001726;ruffle;0.0029619613715643!GO:0008139;nuclear localization sequence binding;0.00298621680574907!GO:0043623;cellular protein complex assembly;0.00298952571728633!GO:0022890;inorganic cation transmembrane transporter activity;0.00299777775967898!GO:0019867;outer membrane;0.00313039575901946!GO:0001666;response to hypoxia;0.00348106833258395!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.00354619241665203!GO:0051087;chaperone binding;0.00359585143786886!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00365731360601344!GO:0008610;lipid biosynthetic process;0.00375528540756041!GO:0007272;ensheathment of neurons;0.00389546337475916!GO:0008366;axon ensheathment;0.00389546337475916!GO:0006402;mRNA catabolic process;0.00395324146524824!GO:0004298;threonine endopeptidase activity;0.00396722968780176!GO:0031968;organelle outer membrane;0.0040349644514049!GO:0005048;signal sequence binding;0.0040591455384358!GO:0008154;actin polymerization and/or depolymerization;0.00413762165611046!GO:0012506;vesicle membrane;0.00417045115513763!GO:0006892;post-Golgi vesicle-mediated transport;0.00443092078509643!GO:0006333;chromatin assembly or disassembly;0.00462638743301819!GO:0043005;neuron projection;0.00489135760658022!GO:0031111;negative regulation of microtubule polymerization or depolymerization;0.00523679829418286!GO:0016311;dephosphorylation;0.00530231620774607!GO:0046930;pore complex;0.00565698319580577!GO:0009108;coenzyme biosynthetic process;0.00566214733968727!GO:0050811;GABA receptor binding;0.00574795512982167!GO:0009117;nucleotide metabolic process;0.00574795512982167!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.00584515777349868!GO:0003697;single-stranded DNA binding;0.00587167200870374!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00605056827687357!GO:0030132;clathrin coat of coated pit;0.00605056827687357!GO:0045187;regulation of circadian sleep/wake cycle, sleep;0.006146529909139!GO:0004667;prostaglandin-D synthase activity;0.006146529909139!GO:0050802;circadian sleep/wake cycle, sleep;0.006146529909139!GO:0022410;circadian sleep/wake cycle process;0.006146529909139!GO:0042749;regulation of circadian sleep/wake cycle;0.006146529909139!GO:0030041;actin filament polymerization;0.006146529909139!GO:0048487;beta-tubulin binding;0.00629824743925943!GO:0009892;negative regulation of metabolic process;0.00652155472076984!GO:0051920;peroxiredoxin activity;0.00664281525410854!GO:0016050;vesicle organization and biogenesis;0.00667767153310039!GO:0005938;cell cortex;0.00684454155024187!GO:0001558;regulation of cell growth;0.00694829555106787!GO:0001508;regulation of action potential;0.00700987419776835!GO:0043067;regulation of programmed cell death;0.00711923264240537!GO:0022406;membrane docking;0.00714482877043719!GO:0048278;vesicle docking;0.00714482877043719!GO:0051726;regulation of cell cycle;0.00724681170254782!GO:0042981;regulation of apoptosis;0.00728325967702529!GO:0008286;insulin receptor signaling pathway;0.00745531378848233!GO:0030865;cortical cytoskeleton organization and biogenesis;0.00749620598568632!GO:0006612;protein targeting to membrane;0.00768094298153214!GO:0008026;ATP-dependent helicase activity;0.00815555248624004!GO:0006643;membrane lipid metabolic process;0.00835095364688566!GO:0000074;regulation of progression through cell cycle;0.00858211704173225!GO:0065002;intracellular protein transport across a membrane;0.00865814251487941!GO:0050767;regulation of neurogenesis;0.00893070014419136!GO:0031114;regulation of microtubule depolymerization;0.00893070014419136!GO:0007026;negative regulation of microtubule depolymerization;0.00893070014419136!GO:0030426;growth cone;0.00903754032292376!GO:0005852;eukaryotic translation initiation factor 3 complex;0.0092332465025279!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.00932538594256793!GO:0006414;translational elongation;0.0094569760484902!GO:0044433;cytoplasmic vesicle part;0.00973183117092044!GO:0005885;Arp2/3 protein complex;0.0097921144852736!GO:0005813;centrosome;0.0102254039545136!GO:0019208;phosphatase regulator activity;0.0102254039545136!GO:0007050;cell cycle arrest;0.0102350567787878!GO:0065007;biological regulation;0.0104898413178787!GO:0048500;signal recognition particle;0.0105243877483635!GO:0006470;protein amino acid dephosphorylation;0.0105619926605655!GO:0051789;response to protein stimulus;0.0106153561180055!GO:0006986;response to unfolded protein;0.0106153561180055!GO:0019904;protein domain specific binding;0.0106916279629553!GO:0004386;helicase activity;0.0107640092373459!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.0114333750490836!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0115539770311342!GO:0043021;ribonucleoprotein binding;0.0118985924578215!GO:0030427;site of polarized growth;0.0121275825296376!GO:0044448;cell cortex part;0.0121275825296376!GO:0000314;organellar small ribosomal subunit;0.0123181925462673!GO:0005763;mitochondrial small ribosomal subunit;0.0123181925462673!GO:0031902;late endosome membrane;0.0127979179720944!GO:0006904;vesicle docking during exocytosis;0.0128536131177647!GO:0051168;nuclear export;0.0129555585863652!GO:0042802;identical protein binding;0.013112521577432!GO:0051129;negative regulation of cellular component organization and biogenesis;0.013112521577432!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;0.0140285250671689!GO:0060052;neurofilament cytoskeleton organization and biogenesis;0.0140956588511076!GO:0006891;intra-Golgi vesicle-mediated transport;0.0140956588511076!GO:0031124;mRNA 3'-end processing;0.0141020265082465!GO:0005085;guanyl-nucleotide exchange factor activity;0.014163739520948!GO:0015629;actin cytoskeleton;0.0144455764050078!GO:0016408;C-acyltransferase activity;0.0144732007694072!GO:0000059;protein import into nucleus, docking;0.0147561259586134!GO:0051056;regulation of small GTPase mediated signal transduction;0.0150503888510457!GO:0031324;negative regulation of cellular metabolic process;0.0153307425832947!GO:0065004;protein-DNA complex assembly;0.0156854187195645!GO:0016859;cis-trans isomerase activity;0.0159315227368988!GO:0007266;Rho protein signal transduction;0.0162685839410913!GO:0030659;cytoplasmic vesicle membrane;0.0164847446911172!GO:0006695;cholesterol biosynthetic process;0.017505806546394!GO:0030866;cortical actin cytoskeleton organization and biogenesis;0.017505806546394!GO:0005099;Ras GTPase activator activity;0.0186190036570247!GO:0048154;S100 beta binding;0.018738357407383!GO:0004722;protein serine/threonine phosphatase activity;0.0187964610367317!GO:0001578;microtubule bundle formation;0.0189104637250616!GO:0046870;cadmium ion binding;0.0189622377346115!GO:0016481;negative regulation of transcription;0.0189822041326429!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0190083377739108!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0190083377739108!GO:0051540;metal cluster binding;0.0192761418953816!GO:0051536;iron-sulfur cluster binding;0.0192761418953816!GO:0005762;mitochondrial large ribosomal subunit;0.0193759222656657!GO:0000315;organellar large ribosomal subunit;0.0193759222656657!GO:0030137;COPI-coated vesicle;0.0195537778444338!GO:0051287;NAD binding;0.0203280742500858!GO:0003690;double-stranded DNA binding;0.0203820967697723!GO:0033673;negative regulation of kinase activity;0.0203820967697723!GO:0006469;negative regulation of protein kinase activity;0.0203820967697723!GO:0005875;microtubule associated complex;0.0207460116882808!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0209371242870252!GO:0046474;glycerophospholipid biosynthetic process;0.0211768572274129!GO:0005869;dynactin complex;0.0212091986259923!GO:0008186;RNA-dependent ATPase activity;0.0212091986259923!GO:0050839;cell adhesion molecule binding;0.0213624313053448!GO:0030658;transport vesicle membrane;0.0225446330490822!GO:0005815;microtubule organizing center;0.0229220732325733!GO:0045892;negative regulation of transcription, DNA-dependent;0.0229220732325733!GO:0035035;histone acetyltransferase binding;0.0230402322653652!GO:0016568;chromatin modification;0.0230987402433195!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.0236243467226809!GO:0042254;ribosome biogenesis and assembly;0.0242310344757688!GO:0015682;ferric iron transport;0.0243588499967746!GO:0015091;ferric iron transmembrane transporter activity;0.0243588499967746!GO:0031643;positive regulation of myelination;0.0243588499967746!GO:0016272;prefoldin complex;0.0245402427429479!GO:0003713;transcription coactivator activity;0.024785153141835!GO:0003746;translation elongation factor activity;0.0260293673036995!GO:0006665;sphingolipid metabolic process;0.0263104935813384!GO:0007049;cell cycle;0.0264850768814262!GO:0030663;COPI coated vesicle membrane;0.0273919776078459!GO:0030126;COPI vesicle coat;0.0273919776078459!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0274375044477186!GO:0045047;protein targeting to ER;0.0274375044477186!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;0.0278179885018906!GO:0019888;protein phosphatase regulator activity;0.0281592168164927!GO:0051348;negative regulation of transferase activity;0.0281592168164927!GO:0042585;germinal vesicle;0.0281592168164927!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;0.0281592168164927!GO:0006672;ceramide metabolic process;0.0287322813579843!GO:0008250;oligosaccharyl transferase complex;0.0287648010822124!GO:0030384;phosphoinositide metabolic process;0.0289273158425591!GO:0031109;microtubule polymerization or depolymerization;0.0301402176587175!GO:0005801;cis-Golgi network;0.0303651885136137!GO:0051261;protein depolymerization;0.0305650711590161!GO:0019902;phosphatase binding;0.0316250429586654!GO:0043488;regulation of mRNA stability;0.0316250429586654!GO:0043487;regulation of RNA stability;0.0316250429586654!GO:0009081;branched chain family amino acid metabolic process;0.0316966423216825!GO:0051252;regulation of RNA metabolic process;0.0317539615524062!GO:0030742;GTP-dependent protein binding;0.032014693078117!GO:0017166;vinculin binding;0.0325218268106177!GO:0030660;Golgi-associated vesicle membrane;0.0329231456880108!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0329231456880108!GO:0043284;biopolymer biosynthetic process;0.0332780840299631!GO:0019911;structural constituent of myelin sheath;0.0335903181616057!GO:0051427;hormone receptor binding;0.0343039503170904!GO:0007005;mitochondrion organization and biogenesis;0.034460288015979!GO:0050435;beta-amyloid metabolic process;0.034823084787252!GO:0005868;cytoplasmic dynein complex;0.0348425996034494!GO:0031123;RNA 3'-end processing;0.0356586243935407!GO:0045446;endothelial cell differentiation;0.0364135695258272!GO:0043681;protein import into mitochondrion;0.03702893534735!GO:0004860;protein kinase inhibitor activity;0.037186317021444!GO:0006383;transcription from RNA polymerase III promoter;0.0374816050152711!GO:0005667;transcription factor complex;0.0374816050152711!GO:0051276;chromosome organization and biogenesis;0.0374816050152711!GO:0007017;microtubule-based process;0.0377483592094477!GO:0016584;nucleosome positioning;0.0380044461125252!GO:0030258;lipid modification;0.0384192872508213!GO:0030425;dendrite;0.0384330889074682!GO:0004576;oligosaccharyl transferase activity;0.0393870217470244!GO:0016491;oxidoreductase activity;0.0397138369685637!GO:0009066;aspartate family amino acid metabolic process;0.0399469906271954!GO:0030320;cellular monovalent inorganic anion homeostasis;0.0404932788314113!GO:0055083;monovalent inorganic anion homeostasis;0.0404932788314113!GO:0055064;chloride ion homeostasis;0.0404932788314113!GO:0030644;cellular chloride ion homeostasis;0.0404932788314113!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.0408498830158021!GO:0003711;transcription elongation regulator activity;0.0408498830158021!GO:0008312;7S RNA binding;0.0417814494301617!GO:0006401;RNA catabolic process;0.0425649929030871!GO:0051539;4 iron, 4 sulfur cluster binding;0.0427910586725363!GO:0030911;TPR domain binding;0.0427910586725363!GO:0031371;ubiquitin conjugating enzyme complex;0.0428185797250168!GO:0050178;phenylpyruvate tautomerase activity;0.0428794055303451!GO:0005774;vacuolar membrane;0.0431405931386224!GO:0030030;cell projection organization and biogenesis;0.0434943942449738!GO:0048858;cell projection morphogenesis;0.0434943942449738!GO:0032990;cell part morphogenesis;0.0434943942449738!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.0438538323190038!GO:0016579;protein deubiquitination;0.0458693288354805!GO:0017091;AU-rich element binding;0.0459868209254338!GO:0050779;RNA destabilization;0.0459868209254338!GO:0000289;poly(A) tail shortening;0.0459868209254338!GO:0019752;carboxylic acid metabolic process;0.0462159948104011!GO:0045296;cadherin binding;0.0463070708572443!GO:0007006;mitochondrial membrane organization and biogenesis;0.0463346739656236!GO:0004004;ATP-dependent RNA helicase activity;0.0467557598861315!GO:0009165;nucleotide biosynthetic process;0.0469860514601151!GO:0046519;sphingoid metabolic process;0.0472730721820539!GO:0006091;generation of precursor metabolites and energy;0.0475026876992109!GO:0001887;selenium metabolic process;0.0480092485585181!GO:0004437;inositol or phosphatidylinositol phosphatase activity;0.0484964620001968!GO:0006611;protein export from nucleus;0.0486138402965373!GO:0042552;myelination;0.0486278235237712!GO:0006509;membrane protein ectodomain proteolysis;0.0488568754750166!GO:0033619;membrane protein proteolysis;0.0488568754750166!GO:0032287;myelin maintenance in the peripheral nervous system;0.0499692418214521!GO:0032838;cell projection cytoplasm;0.0499692418214521!GO:0033081;regulation of T cell differentiation in the thymus;0.0499692418214521!GO:0043217;myelin maintenance;0.0499692418214521!GO:0060087;relaxation of vascular smooth muscle;0.0499692418214521!GO:0032839;dendrite cytoplasm;0.0499692418214521 | |||
|sample_id=10181 | |sample_id=10181 | ||
|sample_note=biological replicate | |sample_note=biological replicate | ||
| Line 76: | Line 100: | ||
|sample_tissue=spinal cord | |sample_tissue=spinal cord | ||
|top_motifs=HOX{A6,A7,B6,B7}:3.67024387266;SOX2:3.53396720414;GATA4:3.51171695701;SOX5:3.50330456184;NFIX:3.37183816623;PRDM1:3.29382377163;MYFfamily:3.2075560236;NKX3-2:2.98126828982;RREB1:2.78743989769;ZNF384:2.74787977047;SOX{8,9,10}:2.60330024173;FOXP3:2.59776248446;REST:2.59489161914;ZFP161:2.50006400597;SMAD1..7,9:2.49579551716;MTF1:2.42388140575;EP300:2.41318976046;KLF4:2.41205644768;HIC1:2.41199428924;RBPJ:2.31566782364;ATF2:2.24979898301;MED-1{core}:2.24139420144;NHLH1,2:2.21020837704;ZBTB6:2.17787535353;PAX6:2.12850287327;MTE{core}:2.07986900262;PRRX1,2:2.07966136995;STAT2,4,6:2.07204165405;MZF1:2.03827645529;TFAP2B:1.98219606302;POU3F1..4:1.93941485712;GFI1B:1.93688299119;NR3C1:1.92058298927;TGIF1:1.91084299568;GTF2I:1.89568055094;XBP1:1.83351677644;OCT4_SOX2{dimer}:1.8245092713;BPTF:1.74719472535;NKX6-1,2:1.74681690627;PATZ1:1.73114691036;SOX17:1.72171286061;CUX2:1.72048421031;GCM1,2:1.70587664655;JUN:1.70122571807;FOXD3:1.69466167158;PDX1:1.68300132304;ZIC1..3:1.68057795461;MAZ:1.66823411104;FOXM1:1.64492132012;LMO2:1.62748793345;EGR1..3:1.57316768077;DBP:1.53570042431;MYBL2:1.46696676078;RFX2..5_RFXANK_RFXAP:1.46515058514;EBF1:1.42976346663;IKZF2:1.37588196935;NANOG:1.27213088791;POU6F1:1.25174862465;TFAP2{A,C}:1.24476965753;SP1:1.24396025468;HBP1_HMGB_SSRP1_UBTF:1.23734593668;MAFB:1.2004101642;FOXQ1:1.18684934412;TLX1..3_NFIC{dimer}:1.16226232695;RFX1:1.14434666672;FOX{F1,F2,J1}:1.10161868766;ARID5B:1.0952985218;RXR{A,B,G}_{NR1H2,PPAR}dimers:1.08052198016;AR:1.07805751591;ZNF423:1.06902744914;BREu{core}:1.06724712971;POU5F1:1.02226643861;FOXO1,3,4:1.0194636135;HOXA9_MEIS1:0.975714472181;ONECUT1,2:0.947430357957;SREBF1,2:0.929088362255;PAX5:0.928597333212;AHR_ARNT_ARNT2:0.920073197542;HMX1:0.885331281401;LEF1_TCF7_TCF7L1,2:0.877793611086;STAT1,3:0.859950136775;ZBTB16:0.848407659618;CDC5L:0.836401829359;TOPORS:0.741126368348;PAX4:0.730985800666;RORA:0.684375750288;NRF1:0.668171635982;AIRE:0.659762791806;FOX{D1,D2}:0.64356293127;GZF1:0.620929968842;T:0.611162105765;TFDP1:0.563009612641;IRF7:0.55566283016;GFI1:0.549226560131;VSX1,2:0.539692130165;FOX{I1,J2}:0.495008171339;HMGA1,2:0.476346971657;ALX1:0.46948718748;FOXP1:0.459195460297;NR1H4:0.457488837474;TLX2:0.426924939199;GTF2A1,2:0.391835163477;TFCP2:0.388303655586;UFEwm:0.373059946638;ZNF143:0.368985646972;IRF1,2:0.365341350586;EVI1:0.354850684536;CREB1:0.326407914884;ESRRA:0.297935018469;NKX2-3_NKX2-5:0.278787416779;CDX1,2,4:0.233835789706;PAX2:0.200024248607;ATF4:0.18382879089;ALX4:0.174988912264;CRX:0.149508395085;PBX1:0.109954112237;HOX{A4,D4}:0.0995306657216;SPZ1:0.046878549823;NFIL3:0.0426636347326;NFY{A,B,C}:0.0141450694752;ATF5_CREB3:-0.00260587659602;NFATC1..3:-0.00996238988452;ATF6:-0.0229321931131;IKZF1:-0.0474592678139;NKX3-1:-0.0497039212226;HAND1,2:-0.0806562582579;NANOG{mouse}:-0.107328084477;PITX1..3:-0.150206680256;NKX2-2,8:-0.182381042975;LHX3,4:-0.187744138734;MEF2{A,B,C,D}:-0.194626794159;TBP:-0.201591473763;XCPE1{core}:-0.211367747671;ZEB1:-0.216158146562;NFE2L1:-0.226328881874;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.263858575897;NKX2-1,4:-0.276135286057;DMAP1_NCOR{1,2}_SMARC:-0.309090964141;ZNF238:-0.309468262964;HIF1A:-0.320994447382;TFAP4:-0.331824491074;HNF4A_NR2F1,2:-0.334978194774;FOXN1:-0.339141634823;TEF:-0.342928351887;CEBPA,B_DDIT3:-0.349319402269;SPIB:-0.384497496436;NFE2L2:-0.408146079828;ETS1,2:-0.415450895506;SPI1:-0.454905579882;ADNP_IRX_SIX_ZHX:-0.467468127954;YY1:-0.490275960691;NFE2:-0.497486098116;SRF:-0.548068115411;GATA6:-0.552876359928;FOXA2:-0.55321975123;TBX4,5:-0.556994612488;PAX1,9:-0.651854959537;TP53:-0.654327607854;NR5A1,2:-0.661596068887;MYOD1:-0.666771615209;TEAD1:-0.68993418708;TAL1_TCF{3,4,12}:-0.72038222883;HSF1,2:-0.756458467366;bHLH_family:-0.758770487033;NR6A1:-0.775527673715;RXR{A,B,G}:-0.778352338579;POU1F1:-0.802761916558;POU2F1..3:-0.818205661516;SNAI1..3:-0.826388706032;HNF1A:-0.834375063105;FOXL1:-0.856359275343;HLF:-0.942939673433;ELF1,2,4:-0.980919083107;ESR1:-0.997775135794;BACH2:-1.00579787237;E2F1..5:-1.00631042019;PAX3,7:-1.01307146196;PAX8:-1.0882007879;NFKB1_REL_RELA:-1.09575753923;FOS_FOS{B,L1}_JUN{B,D}:-1.12067213887;RUNX1..3:-1.13549093906;FOSL2:-1.2105363096;MYB:-1.39346568908;GLI1..3:-1.42127401375;ZNF148:-1.43846133562;HES1:-1.49758361342;ELK1,4_GABP{A,B1}:-1.56664163455;RXRA_VDR{dimer}:-1.79133436435;PPARG:-2.26594017857;HOX{A5,B5}:-2.45647373521;EN1,2:-2.82763002264;STAT5{A,B}:-3.03798657674 | |top_motifs=HOX{A6,A7,B6,B7}:3.67024387266;SOX2:3.53396720414;GATA4:3.51171695701;SOX5:3.50330456184;NFIX:3.37183816623;PRDM1:3.29382377163;MYFfamily:3.2075560236;NKX3-2:2.98126828982;RREB1:2.78743989769;ZNF384:2.74787977047;SOX{8,9,10}:2.60330024173;FOXP3:2.59776248446;REST:2.59489161914;ZFP161:2.50006400597;SMAD1..7,9:2.49579551716;MTF1:2.42388140575;EP300:2.41318976046;KLF4:2.41205644768;HIC1:2.41199428924;RBPJ:2.31566782364;ATF2:2.24979898301;MED-1{core}:2.24139420144;NHLH1,2:2.21020837704;ZBTB6:2.17787535353;PAX6:2.12850287327;MTE{core}:2.07986900262;PRRX1,2:2.07966136995;STAT2,4,6:2.07204165405;MZF1:2.03827645529;TFAP2B:1.98219606302;POU3F1..4:1.93941485712;GFI1B:1.93688299119;NR3C1:1.92058298927;TGIF1:1.91084299568;GTF2I:1.89568055094;XBP1:1.83351677644;OCT4_SOX2{dimer}:1.8245092713;BPTF:1.74719472535;NKX6-1,2:1.74681690627;PATZ1:1.73114691036;SOX17:1.72171286061;CUX2:1.72048421031;GCM1,2:1.70587664655;JUN:1.70122571807;FOXD3:1.69466167158;PDX1:1.68300132304;ZIC1..3:1.68057795461;MAZ:1.66823411104;FOXM1:1.64492132012;LMO2:1.62748793345;EGR1..3:1.57316768077;DBP:1.53570042431;MYBL2:1.46696676078;RFX2..5_RFXANK_RFXAP:1.46515058514;EBF1:1.42976346663;IKZF2:1.37588196935;NANOG:1.27213088791;POU6F1:1.25174862465;TFAP2{A,C}:1.24476965753;SP1:1.24396025468;HBP1_HMGB_SSRP1_UBTF:1.23734593668;MAFB:1.2004101642;FOXQ1:1.18684934412;TLX1..3_NFIC{dimer}:1.16226232695;RFX1:1.14434666672;FOX{F1,F2,J1}:1.10161868766;ARID5B:1.0952985218;RXR{A,B,G}_{NR1H2,PPAR}dimers:1.08052198016;AR:1.07805751591;ZNF423:1.06902744914;BREu{core}:1.06724712971;POU5F1:1.02226643861;FOXO1,3,4:1.0194636135;HOXA9_MEIS1:0.975714472181;ONECUT1,2:0.947430357957;SREBF1,2:0.929088362255;PAX5:0.928597333212;AHR_ARNT_ARNT2:0.920073197542;HMX1:0.885331281401;LEF1_TCF7_TCF7L1,2:0.877793611086;STAT1,3:0.859950136775;ZBTB16:0.848407659618;CDC5L:0.836401829359;TOPORS:0.741126368348;PAX4:0.730985800666;RORA:0.684375750288;NRF1:0.668171635982;AIRE:0.659762791806;FOX{D1,D2}:0.64356293127;GZF1:0.620929968842;T:0.611162105765;TFDP1:0.563009612641;IRF7:0.55566283016;GFI1:0.549226560131;VSX1,2:0.539692130165;FOX{I1,J2}:0.495008171339;HMGA1,2:0.476346971657;ALX1:0.46948718748;FOXP1:0.459195460297;NR1H4:0.457488837474;TLX2:0.426924939199;GTF2A1,2:0.391835163477;TFCP2:0.388303655586;UFEwm:0.373059946638;ZNF143:0.368985646972;IRF1,2:0.365341350586;EVI1:0.354850684536;CREB1:0.326407914884;ESRRA:0.297935018469;NKX2-3_NKX2-5:0.278787416779;CDX1,2,4:0.233835789706;PAX2:0.200024248607;ATF4:0.18382879089;ALX4:0.174988912264;CRX:0.149508395085;PBX1:0.109954112237;HOX{A4,D4}:0.0995306657216;SPZ1:0.046878549823;NFIL3:0.0426636347326;NFY{A,B,C}:0.0141450694752;ATF5_CREB3:-0.00260587659602;NFATC1..3:-0.00996238988452;ATF6:-0.0229321931131;IKZF1:-0.0474592678139;NKX3-1:-0.0497039212226;HAND1,2:-0.0806562582579;NANOG{mouse}:-0.107328084477;PITX1..3:-0.150206680256;NKX2-2,8:-0.182381042975;LHX3,4:-0.187744138734;MEF2{A,B,C,D}:-0.194626794159;TBP:-0.201591473763;XCPE1{core}:-0.211367747671;ZEB1:-0.216158146562;NFE2L1:-0.226328881874;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.263858575897;NKX2-1,4:-0.276135286057;DMAP1_NCOR{1,2}_SMARC:-0.309090964141;ZNF238:-0.309468262964;HIF1A:-0.320994447382;TFAP4:-0.331824491074;HNF4A_NR2F1,2:-0.334978194774;FOXN1:-0.339141634823;TEF:-0.342928351887;CEBPA,B_DDIT3:-0.349319402269;SPIB:-0.384497496436;NFE2L2:-0.408146079828;ETS1,2:-0.415450895506;SPI1:-0.454905579882;ADNP_IRX_SIX_ZHX:-0.467468127954;YY1:-0.490275960691;NFE2:-0.497486098116;SRF:-0.548068115411;GATA6:-0.552876359928;FOXA2:-0.55321975123;TBX4,5:-0.556994612488;PAX1,9:-0.651854959537;TP53:-0.654327607854;NR5A1,2:-0.661596068887;MYOD1:-0.666771615209;TEAD1:-0.68993418708;TAL1_TCF{3,4,12}:-0.72038222883;HSF1,2:-0.756458467366;bHLH_family:-0.758770487033;NR6A1:-0.775527673715;RXR{A,B,G}:-0.778352338579;POU1F1:-0.802761916558;POU2F1..3:-0.818205661516;SNAI1..3:-0.826388706032;HNF1A:-0.834375063105;FOXL1:-0.856359275343;HLF:-0.942939673433;ELF1,2,4:-0.980919083107;ESR1:-0.997775135794;BACH2:-1.00579787237;E2F1..5:-1.00631042019;PAX3,7:-1.01307146196;PAX8:-1.0882007879;NFKB1_REL_RELA:-1.09575753923;FOS_FOS{B,L1}_JUN{B,D}:-1.12067213887;RUNX1..3:-1.13549093906;FOSL2:-1.2105363096;MYB:-1.39346568908;GLI1..3:-1.42127401375;ZNF148:-1.43846133562;HES1:-1.49758361342;ELK1,4_GABP{A,B1}:-1.56664163455;RXRA_VDR{dimer}:-1.79133436435;PPARG:-2.26594017857;HOX{A5,B5}:-2.45647373521;EN1,2:-2.82763002264;STAT5{A,B}:-3.03798657674 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10181-103D1;search_select_hide=table117:FF:10181-103D1 | |||
}} | }} | ||
Latest revision as of 12:25, 3 June 2020
| Name: | spinal cord - adult, donor10196 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs13807 |
| Sample type: | tissues |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs13807
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs13807
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.0535 |
| 10 | 10 | 0.0743 |
| 100 | 100 | 0.332 |
| 101 | 101 | 0.641 |
| 102 | 102 | 0.875 |
| 103 | 103 | 0.0713 |
| 104 | 104 | 0.0973 |
| 105 | 105 | 0.114 |
| 106 | 106 | 0.0945 |
| 107 | 107 | 0.401 |
| 108 | 108 | 0.795 |
| 109 | 109 | 0.00103 |
| 11 | 11 | 0.0086 |
| 110 | 110 | 0.042 |
| 111 | 111 | 0.244 |
| 112 | 112 | 0.553 |
| 113 | 113 | 0.21 |
| 114 | 114 | 0.137 |
| 115 | 115 | 0.842 |
| 116 | 116 | 0.179 |
| 117 | 117 | 0.00621 |
| 118 | 118 | 0.129 |
| 119 | 119 | 0.286 |
| 12 | 12 | 0.287 |
| 120 | 120 | 0.233 |
| 121 | 121 | 0.577 |
| 122 | 122 | 0.66 |
| 123 | 123 | 0.818 |
| 124 | 124 | 0.43 |
| 125 | 125 | 0.458 |
| 126 | 126 | 0.118 |
| 127 | 127 | 0.579 |
| 128 | 128 | 0.397 |
| 129 | 129 | 0.67 |
| 13 | 13 | 0.00184 |
| 130 | 130 | 0.221 |
| 131 | 131 | 0.00858 |
| 132 | 132 | 0.569 |
| 133 | 133 | 0.015 |
| 134 | 134 | 0.904 |
| 135 | 135 | 0.104 |
| 136 | 136 | 0.00237 |
| 137 | 137 | 0.688 |
| 138 | 138 | 0.889 |
| 139 | 139 | 0.0549 |
| 14 | 14 | 0.772 |
| 140 | 140 | 0.797 |
| 141 | 141 | 0.637 |
| 142 | 142 | 0.951 |
| 143 | 143 | 0.0187 |
| 144 | 144 | 0.737 |
| 145 | 145 | 0.263 |
| 146 | 146 | 0.389 |
| 147 | 147 | 0.634 |
| 148 | 148 | 0.805 |
| 149 | 149 | 0.182 |
| 15 | 15 | 0.0387 |
| 150 | 150 | 0.129 |
| 151 | 151 | 0.769 |
| 152 | 152 | 0.122 |
| 153 | 153 | 0.98 |
| 154 | 154 | 0.467 |
| 155 | 155 | 0.542 |
| 156 | 156 | 0.276 |
| 157 | 157 | 0.38 |
| 158 | 158 | 0.362 |
| 159 | 159 | 0.023 |
| 16 | 16 | 0.0595 |
| 160 | 160 | 0.277 |
| 161 | 161 | 0.169 |
| 162 | 162 | 0.715 |
| 163 | 163 | 0.885 |
| 164 | 164 | 0.00582 |
| 165 | 165 | 0.183 |
| 166 | 166 | 0.587 |
| 167 | 167 | 0.964 |
| 168 | 168 | 0.733 |
| 169 | 169 | 0.025 |
| 17 | 17 | 0.0761 |
| 18 | 18 | 0.0912 |
| 19 | 19 | 0.409 |
| 2 | 2 | 0.954 |
| 20 | 20 | 0.155 |
| 21 | 21 | 0.0529 |
| 22 | 22 | 0.271 |
| 23 | 23 | 0.67 |
| 24 | 24 | 0.0409 |
| 25 | 25 | 0.647 |
| 26 | 26 | 0.00152 |
| 27 | 27 | 0.863 |
| 28 | 28 | 0.697 |
| 29 | 29 | 0.00612 |
| 3 | 3 | 0.0278 |
| 30 | 30 | 0.808 |
| 31 | 31 | 0.979 |
| 32 | 32 | 0.0386 |
| 33 | 33 | 0.0479 |
| 34 | 34 | 0.737 |
| 35 | 35 | 0.492 |
| 36 | 36 | 0.265 |
| 37 | 37 | 0.0339 |
| 38 | 38 | 0.341 |
| 39 | 39 | 0.498 |
| 4 | 4 | 0.947 |
| 40 | 40 | 0.077 |
| 41 | 41 | 0.248 |
| 42 | 42 | 0.178 |
| 43 | 43 | 0.143 |
| 44 | 44 | 0.189 |
| 45 | 45 | 0.725 |
| 46 | 46 | 0.0499 |
| 47 | 47 | 0.0568 |
| 48 | 48 | 0.0403 |
| 49 | 49 | 0.288 |
| 5 | 5 | 0.724 |
| 50 | 50 | 0.369 |
| 51 | 51 | 0.424 |
| 52 | 52 | 0.928 |
| 53 | 53 | 0.837 |
| 54 | 54 | 0.588 |
| 55 | 55 | 0.818 |
| 56 | 56 | 0.568 |
| 57 | 57 | 0.231 |
| 58 | 58 | 0.363 |
| 59 | 59 | 0.0851 |
| 6 | 6 | 0.952 |
| 60 | 60 | 0.209 |
| 61 | 61 | 0.0584 |
| 62 | 62 | 0.234 |
| 63 | 63 | 0.207 |
| 64 | 64 | 0.133 |
| 65 | 65 | 0.277 |
| 66 | 66 | 0.1 |
| 67 | 67 | 0.507 |
| 68 | 68 | 0.461 |
| 69 | 69 | 0.604 |
| 7 | 7 | 0.112 |
| 70 | 70 | 0.025 |
| 71 | 71 | 0.00843 |
| 72 | 72 | 0.322 |
| 73 | 73 | 0.0399 |
| 74 | 74 | 0.877 |
| 75 | 75 | 0.0132 |
| 76 | 76 | 0.171 |
| 77 | 77 | 0.179 |
| 78 | 78 | 0.00985 |
| 79 | 79 | 0.791 |
| 8 | 8 | 0.051 |
| 80 | 80 | 0.63 |
| 81 | 81 | 0.469 |
| 82 | 82 | 0.814 |
| 83 | 83 | 0.0609 |
| 84 | 84 | 0.338 |
| 85 | 85 | 0.611 |
| 86 | 86 | 0.134 |
| 87 | 87 | 2.66389e-4 |
| 88 | 88 | 0.677 |
| 89 | 89 | 0.256 |
| 9 | 9 | 0.557 |
| 90 | 90 | 0.141 |
| 91 | 91 | 0.666 |
| 92 | 92 | 0.703 |
| 93 | 93 | 0.508 |
| 94 | 94 | 0.134 |
| 95 | 95 | 0.0112 |
| 96 | 96 | 0.873 |
| 97 | 97 | 0.676 |
| 98 | 98 | 0.283 |
| 99 | 99 | 0.578 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs13807
FANTOM5 (FF) ontology
Direct parent terms
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0002240 (spinal cord)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0010314 (structure with developmental contribution from neural crest)
0011216 (organ system subdivision)
0000062 (organ)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003103 (compound organ)
0000489 (cavitated compound organ)
0005174 (dorsal region element)
0010317 (germ layer / neural crest derived structure)
0001017 (central nervous system)
0001016 (nervous system)
0001137 (dorsum)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0010159 (human spinal cord - adult sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0002532 (epiblast (generic))
UBERON:0006601 (presumptive ectoderm)
UBERON:0006241 (future spinal cord)
UBERON:0003057 (chordal neural plate)
UBERON:0010316 (germ layer / neural crest)
