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(Created page with "{{f5samples |id=FF:11210-116A4 |name=Smooth Muscle Cells - Aortic, donor0 |sample_id=11210 |rna_tube_id=116A4 |rna_box=116 |rna_position=A4 |sample_cell_lot=lot:1441 |...")
 
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{{f5samples
{{f5samples
|id=FF:11210-116A4
|DRA_sample_Accession=CAGE@SAMD00005794
|name=Smooth Muscle Cells - Aortic, donor0
|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005794
|sample_id=11210
|HumanCAGEScanFiles=NCig10018;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.primary_cell.CAGEScan/Smooth%2520Muscle%2520Cells%2520-%2520Aortic%252c%2520donor0.NCig10018.11210-116A4.hg19.GCTATA.3prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.primary_cell.CAGEScan/Smooth%2520Muscle%2520Cells%2520-%2520Aortic%252c%2520donor0.NCig10018.11210-116A4.hg19.GCTATA.5prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.primary_cell.CAGEScan/Smooth%2520Muscle%2520Cells%2520-%2520Aortic%252c%2520donor0.NCig10018.11210-116A4.hg19.GCTATA.bam;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.primary_cell.CAGEScan/Smooth%2520Muscle%2520Cells%2520-%2520Aortic%252c%2520donor0.NCig10018.11210-116A4.hg19.GCTATA.pairs.bed.gz
|rna_tube_id=116A4
|accession_numbers=CAGE;DRX008467;DRR009339;DRZ000764;DRZ002149;DRZ012114;DRZ013499
|rna_box=116
|accession_numbers_RNASeq=sRNA-Seq;DRX037141;DRR041507;DRZ007149
|rna_position=A4
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001135,UBERON:0000947,UBERON:0001637,UBERON:0000483,UBERON:0000479,UBERON:0000055,UBERON:0004111,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0003914,UBERON:0000025,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0004573,UBERON:0002385,UBERON:0003509,UBERON:0007500,UBERON:0001981,UBERON:0004237,UBERON:0004695,UBERON:0002049,UBERON:0010317,UBERON:0002111,UBERON:0007798,UBERON:0001015,UBERON:0004178,UBERON:0002204,UBERON:0004535,UBERON:0004571,UBERON:0010191,UBERON:0000383,UBERON:0004572,UBERON:0004537,UBERON:0001009
|sample_cell_lot=lot:1441
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002371,CL:0000393,CL:0000183,CL:0000187,CL:0000192,CL:0000211,CL:0000255,CL:0000359,CL:0002539
|sample_cell_catalog=
|sample_company=Cell Applications
|rna_lot_number=
|rna_catalog_number=CA354-R10a
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_dev_stage=54 years old adult
|sample_tissue=aorta
|sample_donor(cell lot)=
|sample_sex=male
|sample_age=54
|sample_ethnicity=A
|rna_rin=
|rna_od260/230=
|rna_od260/280=
|sample_cell_type=smooth muscle cell
|sample_cell_line=
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
|sample_experimental_condition=
|sample_disease=
|rna_sample_type=total RNA
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0
|rna_weight_ug=25.00000
|rna_concentration=1.00000
|sample_note=machine failed, remainder reloaded, low amount
|profile_hcage=CNhs10838,LSID700,release008,COMPLETED
|profile_cagescan=NCig10018,,,
|profile_srnaseq=SRhi10009,,,
|profile_rnaseq=,,,
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000004,CL:0000012,CL:0000034,CL:0000048,CL:0000055,CL:0000056,CL:0000144,CL:0000183,CL:0000187,CL:0000192,CL:0000211,CL:0000220,CL:0000222,CL:0000255,CL:0000355,CL:0000359,CL:0000393,CL:0000514,CL:0000548,CL:0000680,CL:0000723,CL:0002321,CL:0002371,CL:0002539
|ancestors_in_anatomy_facet=UBERON:0000025,UBERON:0000055,UBERON:0000061,UBERON:0000119,UBERON:0000383,UBERON:0000465,UBERON:0000467,UBERON:0000468,UBERON:0000475,UBERON:0000477,UBERON:0000479,UBERON:0000480,UBERON:0000481,UBERON:0000483,UBERON:0000486,UBERON:0000490,UBERON:0000914,UBERON:0000922,UBERON:0000923,UBERON:0000926,UBERON:0000947,UBERON:0001009,UBERON:0001015,UBERON:0001062,UBERON:0001134,UBERON:0001135,UBERON:0001637,UBERON:0001981,UBERON:0002036,UBERON:0002049,UBERON:0002050,UBERON:0002111,UBERON:0002204,UBERON:0002329,UBERON:0002385,UBERON:0002532,UBERON:0003059,UBERON:0003077,UBERON:0003081,UBERON:0003082,UBERON:0003104,UBERON:0003509,UBERON:0003914,UBERON:0004111,UBERON:0004120,UBERON:0004178,UBERON:0004237,UBERON:0004290,UBERON:0004535,UBERON:0004537,UBERON:0004571,UBERON:0004572,UBERON:0004573,UBERON:0004695,UBERON:0004872,UBERON:0005291,UBERON:0005423,UBERON:0006965,UBERON:0007500,UBERON:0007798,UBERON:0009142
|ancestors_in_disease_facet=
|ancestors_in_disease_facet=
|sample_description=
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000167,FF:0000168
 
|comment=
|created_by=
|creation_date=
|data_phase=2
|datafreeze_phase=2
|def=
|expression_enrichment_score=chr8:55370487..55370503,+!p1@SOX17!1.97!92.71!SOX17;;chr6:134210243..134210257,+!p1@TCF21!1.65!43.22!TCF21;;chr16:86544113..86544145,+!p1@FOXF1!1.49!36.94!FOXF1;;chr11:46299199..46299233,+!p1@CREB3L1!1.39!119.19!CREB3L1;;chr1:170633348..170633399,+!p2@PRRX1!1.39!32.06!PRRX1;;chr4:174451370..174451387,-!p1@HAND2!1.38!23.00!HAND2;;chr11:65686802..65686818,+!p6@DRAP1!1.37!38.34!DRAP1;;chr2:239756671..239756732,+!p1@TWIST2!1.30!59.25!TWIST2;;chr20:6748325..6748352,+!p1@BMP2!1.30!27.18!BMP2;;chr11:46299539..46299620,+!p2@CREB3L1!1.28!29.97!CREB3L1;;chr1:170632285..170632309,+!p1@PRRX1!1.28!20.21!PRRX1;;chr6:34204921..34204939,+!p3@HMGA1!1.27!514.41!HMGA1;;chr9:132427972..132428056,+!p1@PRRX2!1.22!20.21!PRRX2;;chr1:170633262..170633285,+!p3@PRRX1!1.21!17.43!PRRX1;;chr4:174450089..174450153,-!p2@HAND2!1.21!15.33!HAND2;;chr11:65687362..65687436,+!p3@DRAP1!1.17!62.73!DRAP1;;chr11:65686732..65686756,+!p2@DRAP1!1.17!58.55!DRAP1;;chr10:94449703..94449718,+!p1@HHEX!1.17!52.97!HHEX;;chr9:132427883..132427951,+!p2@PRRX2!1.17!13.94!PRRX2;;chr5:72744594..72744609,-!p1@FOXD1!1.16!61.34!FOXD1;;chr11:34642612..34642646,+!p1@EHF!1.15!13.24!EHF;;chr11:65667884..65667895,-!p2@FOSL1!1.14!49.49!FOSL1;;chrY:2803415..2803468,+!p1@ZFY!1.13!12.55!ZFY;;chr5:72744445..72744466,-!p2@FOXD1!1.12!20.21!FOXD1;;chr2:102091566..102091581,-!p1@RFX8!1.11!11.85!RFX8;;chr11:65667846..65667868,-!p1@FOSL1!1.07!287.18!FOSL1;;chr18:53068911..53068935,-!p4@TCF4!1.06!11.85!TCF4;;chr2:239756739..239756755,+!p2@TWIST2!1.03!16.73!TWIST2;;chr16:86600426..86600441,+!p1@FOXC2!1.02!23.70!FOXC2;;chr1:170633058..170633084,+!p5@PRRX1!1.00!9.06!PRRX1;;chr15:67418119..67418162,+!p5@SMAD3!0.99!9.76!SMAD3;;chr12:66218836..66218888,+!p1@HMGA2!0.98!81.55!HMGA2;;chr2:19558373..19558392,-!p1@OSR1!0.96!23.00!OSR1;;chr15:57511609..57511651,+!p2@TCF12!0.96!13.94!TCF12;;chr15:83953397..83953425,-!p1@BNC1!0.95!9.06!BNC1;;chr12:124873852..124873881,-!p3@NCOR2!0.94!48.10!NCOR2;;chr2:121493425..121493474,+!p1@GLI2!0.94!17.43!GLI2;;chrY:21906594..21906622,-!p1@KDM5D!0.94!7.67!KDM5D;;chr7:35293685..35293718,-!p1@TBX20!0.94!7.67!TBX20;;chr11:65687158..65687216,+!p4@DRAP1!0.93!44.61!DRAP1;;chr9:35732647..35732678,+!p2@CREB3!0.92!41.82!CREB3;;chr19:13134772..13134822,+!p2@NFIX!0.90!10.46!NFIX;;chr17:46671108..46671147,-!p1@HOXB5!0.90!6.97!HOXB5;;chr1:170632477..170632506,+!p6@PRRX1!0.90!6.97!PRRX1;;chr15:96869114..96869160,+!p11@NR2F2!0.88!9.06!NR2F2;;chr11:65687222..65687240,+!p7@DRAP1!0.87!8.36!DRAP1;;chr11:120107344..120107351,+!p1@POU2F3!0.86!7.67!POU2F3;;chr12:66218923..66218934,+!p14@HMGA2!0.86!6.27!HMGA2;;chr2:102091478..102091490,-!p3@RFX8!0.86!6.27!RFX8;;chr12:124873357..124873401,-!p1@NCOR2!0.85!75.98!NCOR2;;chr17:59477233..59477263,+!p1@TBX2!0.84!19.52!TBX2;;chr17:46622070..46622109,-!p1@HOXB2!0.84!13.94!HOXB2;;chr17:46622114..46622138,-!p4@HOXB2!0.83!9.06!HOXB2;;chr12:66218255..66218304,+!p3@HMGA2!0.82!16.03!HMGA2;;chr19:31840130..31840160,-!p2@TSHZ3!0.82!9.06!TSHZ3;;chr18:19749386..19749404,+!p2@GATA6!0.82!8.36!GATA6;;chr1:170632115..170632136,+!p9@PRRX1!0.82!5.58!PRRX1;;chr1:170632723..170632739,+!p8@PRRX1!0.82!5.58!PRRX1;;chr7:27153454..27153469,-!p2@HOXA3!0.82!5.58!HOXA3;;chr6:34204672..34204692,+!p1@HMGA1!0.81!665.67!HMGA1;;chr7:137686763..137686784,-!p5@CREB3L2!0.81!9.76!CREB3L2;;chr12:115121962..115121987,-!p1@TBX3!0.80!48.10!TBX3;;chr2:121493492..121493537,+!p2@GLI2!0.80!9.06!GLI2;;chr12:27485762..27485776,+!p3@ARNTL2!0.79!14.64!ARNTL2;;chr17:1959369..1959388,+!p2@HIC1!0.79!14.64!HIC1;;chr8:145159846..145159889,+!p6@MAF1!0.79!7.67!MAF1;;chr19:13136130..13136165,+!p6@NFIX!0.79!6.97!NFIX;;chr17:46621937..46621966,-!p2@HOXB2!0.78!14.64!HOXB2;;chr9:35732592..35732640,+!p1@CREB3!0.77!71.79!CREB3;;chr1:37940170..37940190,+!p1@ZC3H12A!0.77!66.92!ZC3H12A;;chr12:53614115..53614154,-!p1@RARG!0.77!28.58!RARG;;chr12:66218598..66218645,+!p2@HMGA2!0.77!24.40!HMGA2;;chr18:19749541..19749557,+!p1@GATA6!0.77!16.73!GATA6;;chr4:26322267..26322334,+!p3@RBPJ!0.77!12.55!RBPJ;;chr5:72744562..72744573,-!p3@FOXD1!0.77!6.27!FOXD1;;chr2:102091144..102091183,-!p2@RFX8!0.77!4.88!RFX8;;chr18:3448455..3448480,+!p5@TGIF1!0.75!9.06!TGIF1;;chr12:66218212..66218244,+!p5@HMGA2!0.75!6.97!HMGA2;;chr14:62162285..62162296,+!p3@HIF1A!0.74!25.79!HIF1A;;chr11:65687243..65687276,+!p8@DRAP1!0.74!6.27!DRAP1;;chr15:67418047..67418093,+!p4@SMAD3!0.72!5.58!SMAD3;;chr6:34204973..34204990,+!p4@HMGA1!0.71!62.73!HMGA1;;chr3:5021268..5021282,+!p4@BHLHE40!0.71!9.06!BHLHE40;;chr3:141087562..141087594,+!p12@ZBTB38!0.71!4.18!ZBTB38;;chr3:25470156..25470227,+!p2@RARB!0.71!4.18!RARB;;chr5:72744336..72744359,-!p5@FOXD1!0.71!4.18!FOXD1;;chr8:25902876..25902936,-!p1@EBF2!0.71!4.18!EBF2;;chr11:46299443..46299459,+!p4@CREB3L1!0.71!4.18!CREB3L1;;chr12:115122318..115122331,-!p2@TBX3!0.71!4.18!TBX3;;chr12:66218904..66218913,+!p11@HMGA2!0.71!4.18!HMGA2;;chr5:72743793..72743855,-!p4@FOXD1!0.70!4.88!FOXD1;;chr14:62162258..62162269,+!p2@HIF1A!0.69!43.22!HIF1A;;chr3:141087393..141087426,+!p3@ZBTB38!0.69!17.43!ZBTB38;;chr22:38598086..38598105,+!p1@MAFF!0.68!46.00!MAFF;;chr1:170632959..170632987,+!p4@PRRX1!0.68!4.18!PRRX1;;chr11:65686952..65686975,+!p5@DRAP1!0.67!23.00!DRAP1;;chr5:321810..321877,+!p1@AHRR!0.67!13.24!AHRR;;chr21:36260343..36260402,-!p6@RUNX1!0.67!6.27!RUNX1;;chr17:3571863..3571881,-!p1@TAX1BP3!0.66!295.54!TAX1BP3;;chr15:42749722..42749739,-!p2@ZFP106!0.66!6.97!ZFP106;;chr2:200322654..200322707,-!p2@SATB2!0.66!5.58!SATB2;;chr10:94449675..94449694,+!p2@HHEX!0.65!10.46!HHEX;;chr14:61191018..61191048,-!p1@SIX4!0.65!8.36!SIX4;;chr17:41622765..41622821,-!p2@ETV4!0.65!5.58!ETV4;;chr17:59477275..59477286,+!p3@TBX2!0.65!4.88!TBX2;;chr15:67458491..67458505,+!p18@SMAD3!0.65!3.49!SMAD3;;chr15:96869165..96869183,+!p20@NR2F2!0.65!3.49!NR2F2;;chr16:86600458..86600461,+!p3@FOXC2!0.65!3.49!FOXC2;;chr19:13135582..13135600,+!p3@NFIX!0.65!3.49!NFIX;;chr12:54447637..54447659,+!p4@HOXC4!0.65!3.49!HOXC4;;chr7:1577899..1577943,+!p3@MAFK!0.65!3.49!MAFK;;chr7:27153590..27153608,-!p7@HOXA3!0.65!3.49!HOXA3;;chr19:47523058..47523114,+!p1@NPAS1!0.65!3.49!NPAS1;;chr1:170632762..170632786,+!p13@PRRX1!0.65!3.49!PRRX1;;chr12:66218378..66218401,+!p6@HMGA2!0.64!5.58!HMGA2;;chr8:106330656..106330684,+!p1@ZFPM2!0.63!9.76!ZFPM2;;chr2:185463247..185463263,+!p1@ZNF804A!0.63!6.27!ZNF804A;;chr12:26277929..26277955,-!p3@BHLHE41!0.63!4.88!BHLHE41;;chr7:44143925..44143970,+!p1@AEBP1!0.62!85.04!AEBP1;;chr1:151032860..151032918,+!p1@MLLT11!0.62!44.61!MLLT11;;chr14:24837368..24837401,+!p1@NFATC4!0.62!8.36!NFATC4;;chr21:36260295..36260310,-!p3@RUNX1!0.62!5.58!RUNX1;;chr15:96869292..96869320,+!p15@NR2F2!0.62!4.88!NR2F2;;chr20:30193083..30193098,+!p1@ID1!0.61!304.61!ID1;;chr19:31840313..31840380,-!p1@TSHZ3!0.61!9.06!TSHZ3;;chr3:141121847..141121868,+!p5@ZBTB38!0.60!4.88!ZBTB38;;chr10:77161533..77161546,-!p2@ZNF503!0.58!13.24!ZNF503;;chr12:8185346..8185360,+!p2@FOXJ2!0.58!4.88!FOXJ2;;chr11:65686776..65686787,+!p9@DRAP1!0.58!3.49!DRAP1;;chr12:115122005..115122016,-!p3@TBX3!0.58!3.49!TBX3;;chr10:131762504..131762555,-!p1@EBF3!0.58!2.79!EBF3;;chr1:170632250..170632277,+!p7@PRRX1!0.58!2.79!PRRX1;;chr7:27169801..27169844,-!p2@HOXA4!0.58!2.79!HOXA4;;chr7:27183291..27183324,-!p1@HOXA5!0.58!2.79!HOXA5;;chr2:214016899..214016926,-!p10@IKZF2!0.58!2.79!IKZF2;;chr3:168864383..168864400,-!p7@MECOM!0.58!2.79!MECOM;;chr4:174451350..174451363,-!p3@HAND2!0.58!2.79!HAND2;;chr16:31076332..31076388,-!p3@ZNF668!0.58!2.79!ZNF668;;chr12:52445218..52445237,+!p1@NR4A1!0.57!42.52!NR4A1;;chr17:3571887..3571918,-!p2@TAX1BP3!0.57!37.64!TAX1BP3;;chr17:1958388..1958404,+!p1@HIC1!0.57!20.91!HIC1;;chr19:52074502..52074587,+!p1@ZNF175!0.57!11.85!ZNF175;;chr6:1312325..1312340,+!p1@FOXQ1!0.57!4.88!FOXQ1;;chr3:52001448..52001478,-!p2@PCBP4!0.56!45.31!PCBP4;;chr1:164528445..164528459,+!p2@PBX1!0.56!9.76!PBX1;;chr2:71127699..71127744,+!p1@VAX2!0.56!6.27!VAX2;;chr19:3366625..3366629,+!p4@NFIC!0.56!4.18!NFIC;;chr1:151032739..151032748,+!p6@MLLT11!0.56!3.49!MLLT11;;chr11:65686855..65686946,+!p1@DRAP1!0.55!242.57!DRAP1;;chr8:77593474..77593612,+!p1@ZFHX4!0.55!13.24!ZFHX4;;chr11:65430554..65430579,-!p3@RELA!0.55!7.67!RELA;;chr17:59477197..59477212,+!p2@TBX2!0.55!4.88!TBX2;;chr12:66218573..66218596,+!p7@HMGA2!0.55!4.18!HMGA2;;chr7:137686552..137686564,-!p9@CREB3L2!0.55!4.18!CREB3L2;;chr6:35310395..35310410,+!p2@PPARD!0.54!11.85!PPARD;;chr19:45260775..45260838,+!p5@BCL3!0.54!3.49!BCL3;;chr3:178789522..178789564,-!p2@ZMAT3!0.53!22.31!ZMAT3;;chr12:27485785..27485816,+!p1@ARNTL2!0.53!20.91!ARNTL2;;chr7:14029283..14029311,-!p1@ETV1!0.53!16.03!ETV1;;chr16:8962202..8962222,-!p3@CARHSP1!0.53!4.88!CARHSP1;;chr18:19749517..19749531,+!p3@GATA6!0.53!4.88!GATA6;;chr19:13134457..13134462,+!p5@NFIX!0.53!4.88!NFIX;;chr20:50721803..50721857,-!p2@ZFP64!0.53!4.18!ZFP64;;chr11:46299186..46299195,+!p3@CREB3L1!0.53!2.79!CREB3L1;;chr8:72756637..72756664,-!p3@MSC!0.53!2.79!MSC;;chr1:23885981..23886002,-!p1@ID3!0.52!529.05!ID3;;chr7:19157043..19157088,-!p2@TWIST1!0.52!6.97!TWIST1;;chr7:44143978..44143989,+!p2@AEBP1!0.52!4.88!AEBP1;;chr15:96869255..96869291,+!p6@NR2F2!0.52!4.88!NR2F2;;chr15:96874063..96874074,+!p10@NR2F2!0.52!4.88!NR2F2;;chr4:81105027..81105039,+!p3@PRDM8!0.52!2.79!PRDM8;;chr10:77161504..77161530,-!p1@ZNF503!0.51!39.03!ZNF503;;chr21:36259445..36259519,-!p4@RUNX1!0.51!7.67!RUNX1;;chr6:10412600..10412637,-!p1@TFAP2A!0.51!4.18!TFAP2A;;chr3:168864315..168864339,-!p2@MECOM!0.51!4.18!MECOM;;chr10:35484804..35484902,+!p2@CREM!0.50!10.46!CREM;;chr12:66218183..66218209,+!p4@HMGA2!0.50!4.88!HMGA2;;chr12:54447599..54447630,+!p3@HOXC4!0.50!2.79!HOXC4;;chr4:2263809..2263854,-!p1@MXD4!0.49!108.74!MXD4;;chr19:45251943..45252006,+!p1@BCL3!0.49!73.89!BCL3;;chr11:62368696..62368759,-!p4@MTA2!0.49!16.73!MTA2;;chr2:66662281..66662308,+!p1@MEIS1!0.49!9.06!MEIS1;;chr4:81104895..81104920,+!p2@PRDM8!0.49!3.49!PRDM8;;chr19:38720294..38720348,-!p1@DPF1!0.49!2.79!DPF1;;chr1:170632137..170632172,+!p10@PRRX1!0.49!2.09!PRRX1;;chr1:170633225..170633230,+!p25@PRRX1!0.49!2.09!PRRX1;;chr2:85981008..85981025,+!p7@ATOH8!0.49!2.09!ATOH8;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|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000056;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000187;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000192;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000359;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002539;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000947;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001135;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001637;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001981;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002385;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0004573;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0007798
|ffid_belonging_in_development=CL:0000355,CL:0000222,CL:0000514
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|fonse_cell_line_closure=
Line 67: Line 44:
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|fonse_treatment_closure=
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|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Aortic%252c%2520donor0.CNhs10838.11210-116A4.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Aortic%252c%2520donor0.CNhs10838.11210-116A4.hg38.nobarcode.ctss.bed.gz
|id=FF:11210-116A4
|is_a=EFO:0002091;;FF:0000168
|is_obsolete=
|library_id=CNhs10838
|library_id_phase_based=2:CNhs10838
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11210
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10009.GTAGAG.11210
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11210
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10009.GTAGAG.11210
|name=Smooth Muscle Cells - Aortic, donor0
|namespace=FANTOM5
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|refex=http://refex.dbcls.jp/genelist.php?lang
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|rna_box=116
|rna_catalog_number=CA354-R10a
|rna_concentration=1
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0
|rna_lot_number=
|rna_od260/230=
|rna_od260/280=
|rna_position=A4
|rna_rin=
|rna_sample_type=total RNA
|rna_tube_id=116A4
|rna_weight_ug=25
|rnaseq_library_id=SRhi10009.GTAGAG
|sample_age=54
|sample_category=primary cells
|sample_cell_catalog=
|sample_cell_line=
|sample_cell_lot=lot:1441
|sample_cell_type=smooth muscle cell
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
|sample_company=Cell Applications
|sample_description=
|sample_dev_stage=54 years old adult
|sample_disease=
|sample_donor(cell lot)=
|sample_ethnicity=A
|sample_experimental_condition=
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;3.92810188098217e-207!GO:0005737;cytoplasm;1.95272126973867e-190!GO:0043226;organelle;6.72212642977094e-155!GO:0043229;intracellular organelle;1.65337402797593e-154!GO:0043231;intracellular membrane-bound organelle;3.04106166919714e-152!GO:0043227;membrane-bound organelle;4.68456436919138e-152!GO:0044444;cytoplasmic part;5.13729152057032e-140!GO:0044422;organelle part;1.77081784299262e-130!GO:0044446;intracellular organelle part;6.77243885863462e-129!GO:0032991;macromolecular complex;6.90992386897608e-88!GO:0005515;protein binding;1.85530408385032e-78!GO:0030529;ribonucleoprotein complex;1.54994647081149e-74!GO:0044237;cellular metabolic process;2.05548507746042e-72!GO:0044238;primary metabolic process;4.39144162099673e-72!GO:0043170;macromolecule metabolic process;1.31265051179203e-64!GO:0005739;mitochondrion;7.12633054132682e-62!GO:0043233;organelle lumen;1.34776705523314e-61!GO:0031974;membrane-enclosed lumen;1.34776705523314e-61!GO:0044428;nuclear part;6.66077264011067e-55!GO:0031090;organelle membrane;9.75976645789377e-55!GO:0003723;RNA binding;3.31456666110828e-54!GO:0019538;protein metabolic process;1.73553347249673e-52!GO:0005840;ribosome;4.37792094925742e-49!GO:0006412;translation;2.71767754202027e-48!GO:0044260;cellular macromolecule metabolic process;2.54191961420359e-47!GO:0044267;cellular protein metabolic process;7.5216930889069e-47!GO:0016043;cellular component organization and biogenesis;2.73774822391697e-46!GO:0009058;biosynthetic process;2.12706687553642e-45!GO:0043234;protein complex;2.19477177529593e-45!GO:0005634;nucleus;6.76246235487281e-45!GO:0003735;structural constituent of ribosome;2.58795030868371e-44!GO:0015031;protein transport;3.84679622586048e-44!GO:0033036;macromolecule localization;8.14538424385567e-44!GO:0044429;mitochondrial part;8.6168122033927e-43!GO:0045184;establishment of protein localization;1.09073640376983e-41!GO:0005829;cytosol;3.37300034079303e-41!GO:0008104;protein localization;3.85930569843011e-41!GO:0009059;macromolecule biosynthetic process;5.15889155691623e-41!GO:0044249;cellular biosynthetic process;5.15889155691623e-41!GO:0033279;ribosomal subunit;2.34626773029584e-38!GO:0031967;organelle envelope;1.6439228099483e-37!GO:0031975;envelope;3.72052365874365e-37!GO:0006396;RNA processing;2.86962693584758e-35!GO:0031981;nuclear lumen;2.21531385530853e-34!GO:0046907;intracellular transport;3.20925488790317e-34!GO:0005830;cytosolic ribosome (sensu Eukaryota);3.40029384361146e-29!GO:0006886;intracellular protein transport;5.05222850352502e-29!GO:0043283;biopolymer metabolic process;6.27218656356431e-29!GO:0005740;mitochondrial envelope;2.64076125408705e-28!GO:0065003;macromolecular complex assembly;6.47835547583661e-28!GO:0006996;organelle organization and biogenesis;6.89460965322464e-28!GO:0043228;non-membrane-bound organelle;3.51178724152314e-27!GO:0043232;intracellular non-membrane-bound organelle;3.51178724152314e-27!GO:0016071;mRNA metabolic process;4.23252024795221e-27!GO:0031966;mitochondrial membrane;1.25447799407829e-26!GO:0022613;ribonucleoprotein complex biogenesis and assembly;3.12643946049956e-25!GO:0022607;cellular component assembly;3.59416080692514e-25!GO:0019866;organelle inner membrane;1.55376491791232e-24!GO:0010467;gene expression;2.2362499628022e-24!GO:0008380;RNA splicing;2.41476725816451e-24!GO:0044445;cytosolic part;5.47004526272772e-24!GO:0012505;endomembrane system;8.05322670056858e-24!GO:0005743;mitochondrial inner membrane;3.2053528856453e-23!GO:0005783;endoplasmic reticulum;4.98975539100082e-23!GO:0051649;establishment of cellular localization;5.64518095175839e-23!GO:0006397;mRNA processing;5.86803312422105e-23!GO:0051641;cellular localization;7.78020853643428e-23!GO:0006119;oxidative phosphorylation;6.39266242093597e-22!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;6.4550353702335e-22!GO:0005654;nucleoplasm;3.93927028325927e-20!GO:0016462;pyrophosphatase activity;4.97049430986066e-20!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;5.29773649858355e-20!GO:0005794;Golgi apparatus;5.67894384114945e-20!GO:0000166;nucleotide binding;6.45660456782922e-20!GO:0016817;hydrolase activity, acting on acid anhydrides;6.87680115615316e-20!GO:0017111;nucleoside-triphosphatase activity;7.36991345322978e-20!GO:0006457;protein folding;8.16867732854083e-20!GO:0015935;small ribosomal subunit;9.7124969291368e-20!GO:0044455;mitochondrial membrane part;1.11552524646166e-19!GO:0006259;DNA metabolic process;1.1217468760739e-19!GO:0015934;large ribosomal subunit;1.16734937723297e-19!GO:0044432;endoplasmic reticulum part;4.69499456008922e-19!GO:0048770;pigment granule;6.47351294749256e-18!GO:0042470;melanosome;6.47351294749256e-18!GO:0005681;spliceosome;9.28084951956436e-18!GO:0031980;mitochondrial lumen;3.18663265897113e-17!GO:0005759;mitochondrial matrix;3.18663265897113e-17!GO:0005746;mitochondrial respiratory chain;5.89502770745097e-17!GO:0044451;nucleoplasm part;1.99265991398787e-16!GO:0051186;cofactor metabolic process;4.59376221591619e-16!GO:0016874;ligase activity;6.65822448526189e-16!GO:0006512;ubiquitin cycle;8.38373721550505e-16!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);1.26114480908843e-15!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;1.70913929871434e-15!GO:0043285;biopolymer catabolic process;1.75976975712431e-15!GO:0000502;proteasome complex (sensu Eukaryota);2.24466384440514e-15!GO:0009057;macromolecule catabolic process;2.40442280068155e-15!GO:0044265;cellular macromolecule catabolic process;2.46670677768236e-15!GO:0007049;cell cycle;2.97471924301942e-15!GO:0006605;protein targeting;3.11849321071315e-15!GO:0032553;ribonucleotide binding;3.61317139456777e-15!GO:0032555;purine ribonucleotide binding;3.61317139456777e-15!GO:0017076;purine nucleotide binding;3.61435837560862e-15!GO:0005730;nucleolus;4.08818137253619e-15!GO:0022618;protein-RNA complex assembly;7.20414595496753e-15!GO:0050136;NADH dehydrogenase (quinone) activity;1.6473950247836e-14!GO:0003954;NADH dehydrogenase activity;1.6473950247836e-14!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.6473950247836e-14!GO:0008134;transcription factor binding;1.88169570293508e-14!GO:0051603;proteolysis involved in cellular protein catabolic process;2.52567017854317e-14!GO:0051082;unfolded protein binding;3.05694062118684e-14!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);3.66752369754531e-14!GO:0030163;protein catabolic process;4.14665379823014e-14!GO:0048193;Golgi vesicle transport;4.41483156211146e-14!GO:0019941;modification-dependent protein catabolic process;4.5608635770863e-14!GO:0043632;modification-dependent macromolecule catabolic process;4.5608635770863e-14!GO:0044248;cellular catabolic process;5.08192215768175e-14!GO:0044257;cellular protein catabolic process;5.19170706760052e-14!GO:0016192;vesicle-mediated transport;5.55516136727504e-14!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;6.84651653098785e-14!GO:0006511;ubiquitin-dependent protein catabolic process;8.22425238706102e-14!GO:0042175;nuclear envelope-endoplasmic reticulum network;1.00735024245249e-13!GO:0008135;translation factor activity, nucleic acid binding;2.00144692447418e-13!GO:0005761;mitochondrial ribosome;2.28768861796327e-13!GO:0000313;organellar ribosome;2.28768861796327e-13!GO:0043412;biopolymer modification;3.40537989720595e-13!GO:0005789;endoplasmic reticulum membrane;3.68127200692453e-13!GO:0042775;organelle ATP synthesis coupled electron transport;6.00491350936739e-13!GO:0042773;ATP synthesis coupled electron transport;6.00491350936739e-13!GO:0030964;NADH dehydrogenase complex (quinone);7.57816588382596e-13!GO:0045271;respiratory chain complex I;7.57816588382596e-13!GO:0005747;mitochondrial respiratory chain complex I;7.57816588382596e-13!GO:0005793;ER-Golgi intermediate compartment;1.34591473438907e-12!GO:0005524;ATP binding;2.0062212792887e-12!GO:0006732;coenzyme metabolic process;2.26261209850375e-12!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;2.65175205147948e-12!GO:0009055;electron carrier activity;4.13278534962929e-12!GO:0032559;adenyl ribonucleotide binding;4.27210702586236e-12!GO:0006464;protein modification process;4.43413425450244e-12!GO:0030554;adenyl nucleotide binding;6.00356770393146e-12!GO:0022402;cell cycle process;8.0845986992e-12!GO:0000278;mitotic cell cycle;2.08079284641013e-11!GO:0009259;ribonucleotide metabolic process;2.92724567884452e-11!GO:0042254;ribosome biogenesis and assembly;5.22957126439579e-11!GO:0006163;purine nucleotide metabolic process;7.9901805204505e-11!GO:0012501;programmed cell death;8.22659401517237e-11!GO:0009150;purine ribonucleotide metabolic process;9.36654936041209e-11!GO:0003743;translation initiation factor activity;1.34424330543725e-10!GO:0006915;apoptosis;1.64056497300094e-10!GO:0005635;nuclear envelope;3.82492254357848e-10!GO:0006913;nucleocytoplasmic transport;4.68887330561232e-10!GO:0000398;nuclear mRNA splicing, via spliceosome;5.14737277241654e-10!GO:0000375;RNA splicing, via transesterification reactions;5.14737277241654e-10!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;5.14737277241654e-10!GO:0006164;purine nucleotide biosynthetic process;6.08967636653181e-10!GO:0009152;purine ribonucleotide biosynthetic process;6.96091522187635e-10!GO:0009260;ribonucleotide biosynthetic process;7.40864283232075e-10!GO:0008639;small protein conjugating enzyme activity;7.57133433532685e-10!GO:0048523;negative regulation of cellular process;8.33753430972533e-10!GO:0003712;transcription cofactor activity;8.88174972975567e-10!GO:0031965;nuclear membrane;9.09938716131097e-10!GO:0051169;nuclear transport;9.37727017318531e-10!GO:0006413;translational initiation;9.89118044375294e-10!GO:0008219;cell death;1.02389845383725e-09!GO:0016265;death;1.02389845383725e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.16025239137239e-09!GO:0043687;post-translational protein modification;1.28886038749967e-09!GO:0016887;ATPase activity;1.3556708706403e-09!GO:0009199;ribonucleoside triphosphate metabolic process;1.60654930311228e-09!GO:0004842;ubiquitin-protein ligase activity;1.61955585700579e-09!GO:0006325;establishment and/or maintenance of chromatin architecture;1.66336610459699e-09!GO:0006974;response to DNA damage stimulus;1.78101305243984e-09!GO:0009141;nucleoside triphosphate metabolic process;2.06001464143198e-09!GO:0044431;Golgi apparatus part;2.20477970756806e-09!GO:0044453;nuclear membrane part;2.39551531207895e-09!GO:0042623;ATPase activity, coupled;2.72606296248165e-09!GO:0016491;oxidoreductase activity;2.90854876279501e-09!GO:0009205;purine ribonucleoside triphosphate metabolic process;3.35248220332532e-09!GO:0009144;purine nucleoside triphosphate metabolic process;3.35248220332532e-09!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;3.43917829269514e-09!GO:0019787;small conjugating protein ligase activity;3.67765132988511e-09!GO:0003676;nucleic acid binding;5.39588978271942e-09!GO:0006323;DNA packaging;5.54174973259957e-09!GO:0009056;catabolic process;6.45571856835758e-09!GO:0006446;regulation of translational initiation;6.76103424921867e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;7.82562540318471e-09!GO:0008565;protein transporter activity;8.8323505082496e-09!GO:0017038;protein import;1.00647389657165e-08!GO:0016879;ligase activity, forming carbon-nitrogen bonds;1.04235018043708e-08!GO:0051276;chromosome organization and biogenesis;1.07886688738961e-08!GO:0065004;protein-DNA complex assembly;1.35015595849742e-08!GO:0048519;negative regulation of biological process;1.4377461508035e-08!GO:0051726;regulation of cell cycle;1.90406213959268e-08!GO:0009142;nucleoside triphosphate biosynthetic process;2.20350529890476e-08!GO:0009201;ribonucleoside triphosphate biosynthetic process;2.20350529890476e-08!GO:0030120;vesicle coat;2.26284831245155e-08!GO:0030662;coated vesicle membrane;2.26284831245155e-08!GO:0016881;acid-amino acid ligase activity;2.30676554265374e-08!GO:0015986;ATP synthesis coupled proton transport;2.59810125716761e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;2.59810125716761e-08!GO:0000074;regulation of progression through cell cycle;2.62497303739588e-08!GO:0016604;nuclear body;2.64148579482591e-08!GO:0006888;ER to Golgi vesicle-mediated transport;2.66930666554729e-08!GO:0046034;ATP metabolic process;2.80943942062314e-08!GO:0051188;cofactor biosynthetic process;2.98568899021152e-08!GO:0003924;GTPase activity;3.09569263366133e-08!GO:0005788;endoplasmic reticulum lumen;3.41597880715894e-08!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;4.53213791837515e-08!GO:0009145;purine nucleoside triphosphate biosynthetic process;4.53213791837515e-08!GO:0006333;chromatin assembly or disassembly;6.01740113209706e-08!GO:0005694;chromosome;6.46422682318546e-08!GO:0006399;tRNA metabolic process;7.39883388231426e-08!GO:0019829;cation-transporting ATPase activity;8.35057941156852e-08!GO:0009117;nucleotide metabolic process;8.60891379499808e-08!GO:0006281;DNA repair;9.27252940229128e-08!GO:0051246;regulation of protein metabolic process;9.98033647269195e-08!GO:0009719;response to endogenous stimulus;1.07354875272097e-07!GO:0009060;aerobic respiration;1.11884446711855e-07!GO:0048475;coated membrane;1.17479759429517e-07!GO:0030117;membrane coat;1.17479759429517e-07!GO:0006461;protein complex assembly;1.33786655309957e-07!GO:0005768;endosome;1.40361994545355e-07!GO:0000139;Golgi membrane;1.4121239950981e-07!GO:0043067;regulation of programmed cell death;1.43313706704778e-07!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;1.51607736746935e-07!GO:0000087;M phase of mitotic cell cycle;1.59644905857022e-07!GO:0042981;regulation of apoptosis;1.79133982995941e-07!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;1.79133982995941e-07!GO:0004812;aminoacyl-tRNA ligase activity;1.79133982995941e-07!GO:0016875;ligase activity, forming carbon-oxygen bonds;1.79133982995941e-07!GO:0016740;transferase activity;1.89177383635324e-07!GO:0004386;helicase activity;1.9648548656701e-07!GO:0065002;intracellular protein transport across a membrane;1.99462033593821e-07!GO:0007067;mitosis;2.006199390545e-07!GO:0005643;nuclear pore;2.11084362356588e-07!GO:0015078;hydrogen ion transmembrane transporter activity;2.12233180467053e-07!GO:0006334;nucleosome assembly;2.23954135522126e-07!GO:0006916;anti-apoptosis;2.26667082294259e-07!GO:0043069;negative regulation of programmed cell death;2.31761039078504e-07!GO:0006364;rRNA processing;2.34944849102764e-07!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;2.48154841169713e-07!GO:0043038;amino acid activation;2.67662295415117e-07!GO:0006418;tRNA aminoacylation for protein translation;2.67662295415117e-07!GO:0043039;tRNA aminoacylation;2.67662295415117e-07!GO:0008026;ATP-dependent helicase activity;2.88465268920663e-07!GO:0006260;DNA replication;2.98378479439227e-07!GO:0016787;hydrolase activity;3.07735894579786e-07!GO:0045333;cellular respiration;3.28775546451305e-07!GO:0006754;ATP biosynthetic process;3.34181819184427e-07!GO:0006753;nucleoside phosphate metabolic process;3.34181819184427e-07!GO:0016072;rRNA metabolic process;4.12929783654153e-07!GO:0043066;negative regulation of apoptosis;4.16364572742211e-07!GO:0016070;RNA metabolic process;4.98169309629993e-07!GO:0006366;transcription from RNA polymerase II promoter;5.23103828228521e-07!GO:0031497;chromatin assembly;6.78353237906625e-07!GO:0007249;I-kappaB kinase/NF-kappaB cascade;7.18040719399283e-07!GO:0044427;chromosomal part;8.20156935075364e-07!GO:0022403;cell cycle phase;1.10921086511428e-06!GO:0046930;pore complex;1.54535137809835e-06!GO:0009108;coenzyme biosynthetic process;1.56777854508489e-06!GO:0016607;nuclear speck;1.61385583348507e-06!GO:0032446;protein modification by small protein conjugation;1.62701843586489e-06!GO:0016567;protein ubiquitination;1.67828350820939e-06!GO:0044440;endosomal part;1.8255548389318e-06!GO:0010008;endosome membrane;1.8255548389318e-06!GO:0016023;cytoplasmic membrane-bound vesicle;2.09000975012198e-06!GO:0031988;membrane-bound vesicle;2.09401271777472e-06!GO:0007005;mitochondrion organization and biogenesis;2.11643621627357e-06!GO:0000785;chromatin;2.17036678663485e-06!GO:0005839;proteasome core complex (sensu Eukaryota);2.21234856800832e-06!GO:0031252;leading edge;2.22464590383701e-06!GO:0030532;small nuclear ribonucleoprotein complex;2.75184109403567e-06!GO:0006091;generation of precursor metabolites and energy;2.98249152750204e-06!GO:0016469;proton-transporting two-sector ATPase complex;3.3192863164818e-06!GO:0051187;cofactor catabolic process;3.37948357132832e-06!GO:0006099;tricarboxylic acid cycle;3.98420184484883e-06!GO:0046356;acetyl-CoA catabolic process;3.98420184484883e-06!GO:0003714;transcription corepressor activity;3.98694919175615e-06!GO:0006752;group transfer coenzyme metabolic process;4.24256632255084e-06!GO:0045259;proton-transporting ATP synthase complex;4.79815016218993e-06!GO:0006793;phosphorus metabolic process;6.25681057777388e-06!GO:0006796;phosphate metabolic process;6.25681057777388e-06!GO:0006606;protein import into nucleus;6.89752457568311e-06!GO:0051170;nuclear import;7.0711308520912e-06!GO:0048522;positive regulation of cellular process;7.54328337043384e-06!GO:0005773;vacuole;7.68215092185742e-06!GO:0000151;ubiquitin ligase complex;8.0111170188247e-06!GO:0009109;coenzyme catabolic process;8.11829026890058e-06!GO:0051301;cell division;9.34426322941716e-06!GO:0015630;microtubule cytoskeleton;9.34701393207999e-06!GO:0008654;phospholipid biosynthetic process;9.62100966521637e-06!GO:0006084;acetyl-CoA metabolic process;1.00184536520111e-05!GO:0005905;coated pit;1.05272763790817e-05!GO:0006403;RNA localization;1.07398084479462e-05!GO:0005798;Golgi-associated vesicle;1.18206749196405e-05!GO:0005525;GTP binding;1.22333326692856e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;1.3172994465343e-05!GO:0050657;nucleic acid transport;1.32948355126366e-05!GO:0051236;establishment of RNA localization;1.32948355126366e-05!GO:0050658;RNA transport;1.32948355126366e-05!GO:0031982;vesicle;1.36431061717302e-05!GO:0044262;cellular carbohydrate metabolic process;1.6023789598581e-05!GO:0019867;outer membrane;1.63094360168472e-05!GO:0031968;organelle outer membrane;1.63094360168472e-05!GO:0016779;nucleotidyltransferase activity;1.65441386800508e-05!GO:0031410;cytoplasmic vesicle;1.65441386800508e-05!GO:0016772;transferase activity, transferring phosphorus-containing groups;1.6825766497722e-05!GO:0005762;mitochondrial large ribosomal subunit;1.79026087760589e-05!GO:0000315;organellar large ribosomal subunit;1.79026087760589e-05!GO:0004298;threonine endopeptidase activity;1.84714687110104e-05!GO:0030036;actin cytoskeleton organization and biogenesis;1.87586815799008e-05!GO:0031324;negative regulation of cellular metabolic process;1.99216802048407e-05!GO:0005667;transcription factor complex;2.05596780044581e-05!GO:0016853;isomerase activity;2.13426321034611e-05!GO:0005770;late endosome;2.23923861110455e-05!GO:0016310;phosphorylation;2.31551520962641e-05!GO:0045454;cell redox homeostasis;2.60777473209567e-05!GO:0006613;cotranslational protein targeting to membrane;2.83923300604476e-05!GO:0051789;response to protein stimulus;3.10590461328931e-05!GO:0006986;response to unfolded protein;3.10590461328931e-05!GO:0030867;rough endoplasmic reticulum membrane;3.3993791266549e-05!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;3.44268077667421e-05!GO:0045786;negative regulation of progression through cell cycle;3.49746493704399e-05!GO:0003697;single-stranded DNA binding;3.61670680548887e-05!GO:0019843;rRNA binding;3.74354026924831e-05!GO:0033116;ER-Golgi intermediate compartment membrane;3.92754554840245e-05!GO:0016564;transcription repressor activity;4.31594017636236e-05!GO:0032561;guanyl ribonucleotide binding;5.4214938761904e-05!GO:0019001;guanyl nucleotide binding;5.4214938761904e-05!GO:0000245;spliceosome assembly;6.2288630802491e-05!GO:0005048;signal sequence binding;6.60697629608743e-05!GO:0016568;chromatin modification;7.65302707385723e-05!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;7.987208493171e-05!GO:0016859;cis-trans isomerase activity;8.46746105699846e-05!GO:0005741;mitochondrial outer membrane;8.54350337941631e-05!GO:0008361;regulation of cell size;8.90404660485434e-05!GO:0000323;lytic vacuole;8.90404660485434e-05!GO:0005764;lysosome;8.90404660485434e-05!GO:0065009;regulation of a molecular function;9.27089182248994e-05!GO:0015980;energy derivation by oxidation of organic compounds;9.51163965929576e-05!GO:0050794;regulation of cellular process;9.70738752524433e-05!GO:0003713;transcription coactivator activity;9.91898348620058e-05!GO:0005769;early endosome;9.97716805182541e-05!GO:0009892;negative regulation of metabolic process;0.000102897109051731!GO:0007243;protein kinase cascade;0.000107815823686511!GO:0016563;transcription activator activity;0.000113113496255011!GO:0009165;nucleotide biosynthetic process;0.000123828884945984!GO:0016049;cell growth;0.000127590276027254!GO:0030029;actin filament-based process;0.000130275996397368!GO:0000279;M phase;0.000139297341527102!GO:0043566;structure-specific DNA binding;0.000139340488040147!GO:0003724;RNA helicase activity;0.000176229010560628!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.000188970520014975!GO:0001558;regulation of cell growth;0.000196730578774532!GO:0000786;nucleosome;0.000229716809020235!GO:0046474;glycerophospholipid biosynthetic process;0.00023752487375716!GO:0005813;centrosome;0.000237965378429894!GO:0043623;cellular protein complex assembly;0.00024303955766636!GO:0051028;mRNA transport;0.000250851529582508!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.000275743995874421!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000297199346063913!GO:0007010;cytoskeleton organization and biogenesis;0.000307251232535086!GO:0019899;enzyme binding;0.000309530842458205!GO:0005885;Arp2/3 protein complex;0.000320229583830031!GO:0051329;interphase of mitotic cell cycle;0.000320923189813273!GO:0016044;membrane organization and biogenesis;0.00033500676871454!GO:0008047;enzyme activator activity;0.000338889378862657!GO:0030663;COPI coated vesicle membrane;0.000389454077571975!GO:0030126;COPI vesicle coat;0.000389454077571975!GO:0030133;transport vesicle;0.000390466099725332!GO:0003899;DNA-directed RNA polymerase activity;0.000445626986318546!GO:0005815;microtubule organizing center;0.000501822027546544!GO:0008250;oligosaccharyl transferase complex;0.000502020773363587!GO:0048518;positive regulation of biological process;0.000549334611571606!GO:0007264;small GTPase mediated signal transduction;0.000549334611571606!GO:0043021;ribonucleoprotein binding;0.000594480702846218!GO:0006612;protein targeting to membrane;0.00059533668783742!GO:0042802;identical protein binding;0.000598402986396936!GO:0000314;organellar small ribosomal subunit;0.000600880250660625!GO:0005763;mitochondrial small ribosomal subunit;0.000600880250660625!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000602150758860088!GO:0004576;oligosaccharyl transferase activity;0.000619519484962445!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000642513146787352!GO:0030137;COPI-coated vesicle;0.00075661226322942!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000798810927596802!GO:0051325;interphase;0.000804058686043727!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.00080924498493049!GO:0046467;membrane lipid biosynthetic process;0.000884127021335906!GO:0006950;response to stress;0.000919220643139412!GO:0006414;translational elongation;0.000976591703899517!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000987664965178222!GO:0051920;peroxiredoxin activity;0.001015407885087!GO:0046489;phosphoinositide biosynthetic process;0.00104651026212938!GO:0030176;integral to endoplasmic reticulum membrane;0.00104651026212938!GO:0018196;peptidyl-asparagine modification;0.00112801830872439!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00112801830872439!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00117252021688664!GO:0015399;primary active transmembrane transporter activity;0.00117252021688664!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00119164885750138!GO:0051427;hormone receptor binding;0.00131564865274313!GO:0043681;protein import into mitochondrion;0.00141004301793202!GO:0005819;spindle;0.00147436153817738!GO:0048487;beta-tubulin binding;0.00156313059223208!GO:0043284;biopolymer biosynthetic process;0.00158423166452575!GO:0030132;clathrin coat of coated pit;0.00168292411224282!GO:0008610;lipid biosynthetic process;0.00172075163795722!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.00177383548730823!GO:0006626;protein targeting to mitochondrion;0.00177811384475376!GO:0015992;proton transport;0.00182582029072636!GO:0008632;apoptotic program;0.00190645938695227!GO:0051168;nuclear export;0.00194806927462174!GO:0016481;negative regulation of transcription;0.001966200543398!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.00198106801243301!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00202270653588375!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00202270653588375!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00202270653588375!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00215072698947846!GO:0006818;hydrogen transport;0.00225195788881378!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.00236626538559569!GO:0030658;transport vesicle membrane;0.00244579130255705!GO:0048468;cell development;0.00249092449416055!GO:0031072;heat shock protein binding;0.00249092449416055!GO:0035257;nuclear hormone receptor binding;0.00249452640452336!GO:0005791;rough endoplasmic reticulum;0.00251612085285136!GO:0006082;organic acid metabolic process;0.00257871730629452!GO:0050789;regulation of biological process;0.00263999168782614!GO:0019752;carboxylic acid metabolic process;0.00264238854224092!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00266326774298275!GO:0008092;cytoskeletal protein binding;0.00266326774298275!GO:0007006;mitochondrial membrane organization and biogenesis;0.00278765794788385!GO:0030880;RNA polymerase complex;0.00285074891277376!GO:0008186;RNA-dependent ATPase activity;0.00314974864625351!GO:0045941;positive regulation of transcription;0.00336853550529959!GO:0006261;DNA-dependent DNA replication;0.00340797460235422!GO:0030134;ER to Golgi transport vesicle;0.00388086665620979!GO:0001726;ruffle;0.00388166351163097!GO:0006839;mitochondrial transport;0.00388601974360311!GO:0017166;vinculin binding;0.00395253754596897!GO:0030027;lamellipodium;0.00395742364629355!GO:0030118;clathrin coat;0.0041418829838414!GO:0030659;cytoplasmic vesicle membrane;0.00416314156053175!GO:0040008;regulation of growth;0.00445495116975535!GO:0000059;protein import into nucleus, docking;0.00446801282807482!GO:0009967;positive regulation of signal transduction;0.0044977551927573!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00455779169238766!GO:0006891;intra-Golgi vesicle-mediated transport;0.00481450628058977!GO:0048500;signal recognition particle;0.00485914285037688!GO:0006979;response to oxidative stress;0.00488639995253219!GO:0005096;GTPase activator activity;0.00514426988635801!GO:0050790;regulation of catalytic activity;0.00514426988635801!GO:0051252;regulation of RNA metabolic process;0.00514426988635801!GO:0030127;COPII vesicle coat;0.00514426988635801!GO:0012507;ER to Golgi transport vesicle membrane;0.00514426988635801!GO:0007050;cell cycle arrest;0.00526195566467874!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00526195566467874!GO:0015002;heme-copper terminal oxidase activity;0.00526195566467874!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00526195566467874!GO:0004129;cytochrome-c oxidase activity;0.00526195566467874!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.00540887763070771!GO:0008139;nuclear localization sequence binding;0.00544280878052947!GO:0044452;nucleolar part;0.00545020038572233!GO:0000082;G1/S transition of mitotic cell cycle;0.00555461645982643!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00564322368031916!GO:0006740;NADPH regeneration;0.00564746604239082!GO:0006098;pentose-phosphate shunt;0.00564746604239082!GO:0045045;secretory pathway;0.00570636021577824!GO:0006118;electron transport;0.00585443782542764!GO:0045893;positive regulation of transcription, DNA-dependent;0.00602018241001026!GO:0043492;ATPase activity, coupled to movement of substances;0.00622650963194812!GO:0048471;perinuclear region of cytoplasm;0.0062404231093938!GO:0006509;membrane protein ectodomain proteolysis;0.0062672455626764!GO:0033619;membrane protein proteolysis;0.0062672455626764!GO:0016126;sterol biosynthetic process;0.00629745643814196!GO:0006007;glucose catabolic process;0.00631378969146846!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00631944880348151!GO:0000428;DNA-directed RNA polymerase complex;0.00631944880348151!GO:0043433;negative regulation of transcription factor activity;0.00634651563143777!GO:0030660;Golgi-associated vesicle membrane;0.00639617113509839!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00646349620652591!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00646349620652591!GO:0007242;intracellular signaling cascade;0.0065988852191258!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.00700144298132793!GO:0006650;glycerophospholipid metabolic process;0.00713384719152968!GO:0004004;ATP-dependent RNA helicase activity;0.00736042870569822!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00742207818097544!GO:0003678;DNA helicase activity;0.00781802032076551!GO:0044433;cytoplasmic vesicle part;0.00803074327210394!GO:0043488;regulation of mRNA stability;0.0081047802136219!GO:0043487;regulation of RNA stability;0.0081047802136219!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.00839465735418054!GO:0006383;transcription from RNA polymerase III promoter;0.00845549102749572!GO:0030041;actin filament polymerization;0.00853198767451336!GO:0022890;inorganic cation transmembrane transporter activity;0.00853491383406658!GO:0007040;lysosome organization and biogenesis;0.00870101790409121!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00919097190250654!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.00932383177870492!GO:0050662;coenzyme binding;0.00942375416050958!GO:0015631;tubulin binding;0.00942375416050958!GO:0007051;spindle organization and biogenesis;0.00962557482297251!GO:0004177;aminopeptidase activity;0.00988349718072852!GO:0005774;vacuolar membrane;0.0103594598635085!GO:0031418;L-ascorbic acid binding;0.0104216607956057!GO:0007033;vacuole organization and biogenesis;0.0105307633519399!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0105344810958564!GO:0031543;peptidyl-proline dioxygenase activity;0.0107239194164334!GO:0005862;muscle thin filament tropomyosin;0.0107990480230989!GO:0006595;polyamine metabolic process;0.0109694254971186!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.01127296295637!GO:0045047;protein targeting to ER;0.01127296295637!GO:0019318;hexose metabolic process;0.01127296295637!GO:0005874;microtubule;0.0112828346100865!GO:0006497;protein amino acid lipidation;0.0113388920392711!GO:0003729;mRNA binding;0.0114399459993126!GO:0005975;carbohydrate metabolic process;0.0117170774556274!GO:0046483;heterocycle metabolic process;0.0117233780218102!GO:0030521;androgen receptor signaling pathway;0.0120216658912669!GO:0005869;dynactin complex;0.0120419858068549!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.012113041693451!GO:0005996;monosaccharide metabolic process;0.012330004072048!GO:0048144;fibroblast proliferation;0.012330004072048!GO:0048145;regulation of fibroblast proliferation;0.012330004072048!GO:0016281;eukaryotic translation initiation factor 4F complex;0.0123902381144234!GO:0046519;sphingoid metabolic process;0.0125028934765562!GO:0031625;ubiquitin protein ligase binding;0.012620052913803!GO:0031902;late endosome membrane;0.0129632448925765!GO:0008180;signalosome;0.0132602388404604!GO:0006778;porphyrin metabolic process;0.0132602388404604!GO:0033013;tetrapyrrole metabolic process;0.0132602388404604!GO:0003746;translation elongation factor activity;0.0133916809058687!GO:0005684;U2-dependent spliceosome;0.0134141696813412!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0135010757095041!GO:0012506;vesicle membrane;0.013991836995453!GO:0019206;nucleoside kinase activity;0.0140317046306129!GO:0030125;clathrin vesicle coat;0.0140938778690226!GO:0030665;clathrin coated vesicle membrane;0.0140938778690226!GO:0051287;NAD binding;0.0142270019025957!GO:0008312;7S RNA binding;0.0145084427031985!GO:0006611;protein export from nucleus;0.0146363562167588!GO:0008094;DNA-dependent ATPase activity;0.0149727442240665!GO:0006897;endocytosis;0.0154327180506105!GO:0010324;membrane invagination;0.0154327180506105!GO:0006289;nucleotide-excision repair;0.0160030807290066!GO:0005832;chaperonin-containing T-complex;0.0163573684574103!GO:0035258;steroid hormone receptor binding;0.0164189918222783!GO:0006506;GPI anchor biosynthetic process;0.0167029201131895!GO:0032940;secretion by cell;0.0173827334641115!GO:0003711;transcription elongation regulator activity;0.0174965996315013!GO:0006695;cholesterol biosynthetic process;0.0176543472443658!GO:0008283;cell proliferation;0.0176555623138011!GO:0016197;endosome transport;0.0179144592216638!GO:0033673;negative regulation of kinase activity;0.0179789853128024!GO:0006469;negative regulation of protein kinase activity;0.0179789853128024!GO:0019798;procollagen-proline dioxygenase activity;0.0182009337667073!GO:0000075;cell cycle checkpoint;0.0183389782820214!GO:0003684;damaged DNA binding;0.0184500609228118!GO:0051539;4 iron, 4 sulfur cluster binding;0.0188293021405319!GO:0006520;amino acid metabolic process;0.0188293021405319!GO:0042168;heme metabolic process;0.0189611664714196!GO:0051540;metal cluster binding;0.0190304857507883!GO:0051536;iron-sulfur cluster binding;0.0190304857507883!GO:0000209;protein polyubiquitination;0.0190679682785128!GO:0050811;GABA receptor binding;0.0197205582847406!GO:0045892;negative regulation of transcription, DNA-dependent;0.0199631107753064!GO:0006352;transcription initiation;0.0200414737946134!GO:0016408;C-acyltransferase activity;0.0201288498720057!GO:0048146;positive regulation of fibroblast proliferation;0.0202526349008295!GO:0031529;ruffle organization and biogenesis;0.0209905175152829!GO:0044437;vacuolar part;0.0210016189972584!GO:0006402;mRNA catabolic process;0.0211027811182017!GO:0000049;tRNA binding;0.0211447947711806!GO:0051045;negative regulation of membrane protein ectodomain proteolysis;0.0211878345453006!GO:0051043;regulation of membrane protein ectodomain proteolysis;0.0211878345453006!GO:0051348;negative regulation of transferase activity;0.0215048237091892!GO:0035035;histone acetyltransferase binding;0.0217039702202734!GO:0000030;mannosyltransferase activity;0.0217516781017352!GO:0030119;AP-type membrane coat adaptor complex;0.0220692797105762!GO:0008243;plasminogen activator activity;0.0225607394077414!GO:0006417;regulation of translation;0.0228089551472094!GO:0006458;'de novo' protein folding;0.0228895966833607!GO:0051084;'de novo' posttranslational protein folding;0.0228895966833607!GO:0016584;nucleosome positioning;0.0232159598314183!GO:0043022;ribosome binding;0.0235332149869011!GO:0006505;GPI anchor metabolic process;0.0236190348344057!GO:0016301;kinase activity;0.0239025578373168!GO:0022415;viral reproductive process;0.0242391498503404!GO:0006807;nitrogen compound metabolic process;0.0243182528660809!GO:0008033;tRNA processing;0.0246718803094002!GO:0022408;negative regulation of cell-cell adhesion;0.0261886798694383!GO:0045792;negative regulation of cell size;0.0262228547408367!GO:0008154;actin polymerization and/or depolymerization;0.0262228547408367!GO:0008538;proteasome activator activity;0.026924986964794!GO:0004674;protein serine/threonine kinase activity;0.0272507128951228!GO:0051087;chaperone binding;0.0276349981552616!GO:0031301;integral to organelle membrane;0.0279820803063321!GO:0006672;ceramide metabolic process;0.0279820803063321!GO:0048037;cofactor binding;0.0279820803063321!GO:0051052;regulation of DNA metabolic process;0.0281257264421208!GO:0001666;response to hypoxia;0.0284129915215126!GO:0016272;prefoldin complex;0.0284129915215126!GO:0030308;negative regulation of cell growth;0.0285622115169555!GO:0030145;manganese ion binding;0.0289449659627789!GO:0006739;NADP metabolic process;0.0289449659627789!GO:0006354;RNA elongation;0.0292302061981845!GO:0007265;Ras protein signal transduction;0.0292302061981845!GO:0003756;protein disulfide isomerase activity;0.0295684472257394!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0295684472257394!GO:0008022;protein C-terminus binding;0.0296836108067649!GO:0030833;regulation of actin filament polymerization;0.0296916300072972!GO:0009889;regulation of biosynthetic process;0.030522946067311!GO:0006401;RNA catabolic process;0.0308639397031738!GO:0030384;phosphoinositide metabolic process;0.0308710960623748!GO:0006892;post-Golgi vesicle-mediated transport;0.0308918555399551!GO:0042158;lipoprotein biosynthetic process;0.0310798386795793!GO:0031901;early endosome membrane;0.0312313679966607!GO:0046365;monosaccharide catabolic process;0.0312314677337385!GO:0005765;lysosomal membrane;0.0312314677337385!GO:0050681;androgen receptor binding;0.0312314677337385!GO:0032508;DNA duplex unwinding;0.0312314677337385!GO:0032392;DNA geometric change;0.0312314677337385!GO:0007030;Golgi organization and biogenesis;0.0314364586735135!GO:0032984;macromolecular complex disassembly;0.0320096145189513!GO:0051101;regulation of DNA binding;0.0328797198338529!GO:0006405;RNA export from nucleus;0.0333417966407658!GO:0016776;phosphotransferase activity, phosphate group as acceptor;0.0333513789311137!GO:0006779;porphyrin biosynthetic process;0.0337356453331508!GO:0033014;tetrapyrrole biosynthetic process;0.0337356453331508!GO:0051336;regulation of hydrolase activity;0.0345612738928694!GO:0030131;clathrin adaptor complex;0.0353636166408366!GO:0030433;ER-associated protein catabolic process;0.0355667396790923!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0355667396790923!GO:0008629;induction of apoptosis by intracellular signals;0.0358870403438868!GO:0030911;TPR domain binding;0.0358870403438868!GO:0005637;nuclear inner membrane;0.035912865109917!GO:0005092;GDP-dissociation inhibitor activity;0.0359616084561461!GO:0008637;apoptotic mitochondrial changes;0.0362448379027995!GO:0016628;oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor;0.037401504512515!GO:0031124;mRNA 3'-end processing;0.037401504512515!GO:0006984;ER-nuclear signaling pathway;0.0381086586397189!GO:0004003;ATP-dependent DNA helicase activity;0.038448539369115!GO:0005099;Ras GTPase activator activity;0.0387385813818377!GO:0046822;regulation of nucleocytoplasmic transport;0.0388963350633376!GO:0005100;Rho GTPase activator activity;0.0393432944171388!GO:0016363;nuclear matrix;0.0394657182763323!GO:0031371;ubiquitin conjugating enzyme complex;0.0396603163361703!GO:0007088;regulation of mitosis;0.0406579205659236!GO:0005657;replication fork;0.0414793642852796!GO:0001953;negative regulation of cell-matrix adhesion;0.0417089272423793!GO:0000096;sulfur amino acid metabolic process;0.0417089272423793!GO:0006769;nicotinamide metabolic process;0.04245071455293!GO:0051059;NF-kappaB binding;0.043191182182063!GO:0006096;glycolysis;0.0432725663545837!GO:0009308;amine metabolic process;0.0434395294773502!GO:0046426;negative regulation of JAK-STAT cascade;0.0436224081650176!GO:0009966;regulation of signal transduction;0.0442251116417057!GO:0006368;RNA elongation from RNA polymerase II promoter;0.0444022973493899!GO:0019320;hexose catabolic process;0.0445274519068348!GO:0003682;chromatin binding;0.0445369209311823!GO:0008475;procollagen-lysine 5-dioxygenase activity;0.0446566873276621!GO:0007034;vacuolar transport;0.0451867330309119!GO:0031326;regulation of cellular biosynthetic process;0.0451867330309119!GO:0000339;RNA cap binding;0.0453666608453553!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0454987649206386!GO:0065007;biological regulation;0.0455670605866552!GO:0004656;procollagen-proline 4-dioxygenase activity;0.0456016050107499!GO:0031545;peptidyl-proline 4-dioxygenase activity;0.0456016050107499!GO:0006302;double-strand break repair;0.0458965962894918!GO:0009303;rRNA transcription;0.0467560316328659!GO:0043624;cellular protein complex disassembly;0.0470783209787566!GO:0043086;negative regulation of catalytic activity;0.0472037886161228!GO:0033559;unsaturated fatty acid metabolic process;0.0472037886161228!GO:0006636;unsaturated fatty acid biosynthetic process;0.0472037886161228!GO:0045936;negative regulation of phosphate metabolic process;0.0476001100646621!GO:0006783;heme biosynthetic process;0.0477384579638061!GO:0007569;cell aging;0.0477506923746823!GO:0009893;positive regulation of metabolic process;0.0477560283763856!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.0480526809809531!GO:0043241;protein complex disassembly;0.0485766610358562!GO:0003690;double-stranded DNA binding;0.048593331575769
|sample_id=11210
|sample_note=machine failed, remainder reloaded, low amount
|sample_sex=male
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_tissue=aorta
|top_motifs=GZF1:1.2794823125;PBX1:1.20439035637;POU2F1..3:1.17836141577;ZNF238:1.04593997488;GTF2A1,2:1.03977257293;CRX:1.01657912663;HIF1A:1.01653624015;XCPE1{core}:1.00342144478;EBF1:0.979147036323;HES1:0.949096433397;FOX{I1,J2}:0.940351714159;TFAP4:0.922160735311;TLX1..3_NFIC{dimer}:0.894822240588;POU6F1:0.876310027871;TBP:0.848903860323;ZBTB6:0.838752480921;POU3F1..4:0.807497044446;NFE2L1:0.796854809196;GCM1,2:0.786691518746;HOX{A5,B5}:0.752429206935;ZNF148:0.751292307725;HSF1,2:0.73005612529;EN1,2:0.7023972329;TP53:0.678954649814;CDC5L:0.668106947269;TAL1_TCF{3,4,12}:0.668061676995;TFAP2B:0.638032543999;LHX3,4:0.634658368215;ELK1,4_GABP{A,B1}:0.633380416321;PPARG:0.628961598029;NFE2L2:0.611054579755;TEAD1:0.602722517989;ONECUT1,2:0.585206240638;GFI1B:0.578407440363;SRF:0.575031547739;NFATC1..3:0.573019120096;HMX1:0.520719791531;bHLH_family:0.504725501205;BACH2:0.495636438003;FOS_FOS{B,L1}_JUN{B,D}:0.462111320897;MYBL2:0.46050942388;NKX2-2,8:0.444748446708;SPZ1:0.437403763729;TLX2:0.432011696272;NANOG:0.415362823633;ADNP_IRX_SIX_ZHX:0.414377363396;HIC1:0.413199321107;XBP1:0.399955508156;FOXL1:0.396474640618;PATZ1:0.391610771869;GTF2I:0.384182215901;ZNF423:0.374077476501;ALX4:0.372024296402;SOX17:0.355534384119;NR5A1,2:0.35390932614;NKX3-1:0.353693652679;PRRX1,2:0.347191014509;SMAD1..7,9:0.344846958349;AR:0.340722205409;HBP1_HMGB_SSRP1_UBTF:0.306779019165;JUN:0.293439631287;GLI1..3:0.288279230589;LEF1_TCF7_TCF7L1,2:0.282158072287;FOSL2:0.273892919904;MTE{core}:0.266711818494;STAT5{A,B}:0.263388223691;TFDP1:0.262665157728;IKZF1:0.260526371007;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.244002880738;EGR1..3:0.223467111558;RXRA_VDR{dimer}:0.223245920096;NR3C1:0.218145401804;VSX1,2:0.205267165717;MTF1:0.192322757029;PAX8:0.189652659578;TFCP2:0.188023925506;ZFP161:0.172705017813;NANOG{mouse}:0.163977843125;MAFB:0.16147513896;FOXM1:0.13184428287;NFE2:0.131821854549;HLF:0.129600996124;SOX{8,9,10}:0.129340281361;TBX4,5:0.123515578199;MZF1:0.122786402197;NR1H4:0.121766341269;HNF1A:0.109818743576;ESR1:0.10439064685;GFI1:0.0958866186328;NKX3-2:0.0919247385515;FOXQ1:0.0903983967489;TFAP2{A,C}:0.0896952390118;PDX1:0.0857949908176;HOX{A4,D4}:0.0847191650381;PAX5:0.0712495478465;ATF6:0.0601437277729;ARID5B:0.0553678380169;POU5F1:0.0550008522597;AHR_ARNT_ARNT2:0.0458151591014;NFIX:0.042459493298;MAZ:0.0328034031712;MED-1{core}:0.021087925213;ZNF384:0.0164058692771;SP1:0.014757563262;PAX3,7:0.0038146813329;CREB1:0.00134216366234;NKX6-1,2:-0.00549396828076;KLF4:-0.0180566026349;HOXA9_MEIS1:-0.0313288791072;MEF2{A,B,C,D}:-0.0336442120038;REST:-0.033669265516;ATF2:-0.0345041379881;DBP:-0.042262139385;CEBPA,B_DDIT3:-0.0439138934375;RXR{A,B,G}:-0.048319659864;ESRRA:-0.0518139890045;NHLH1,2:-0.0618724017166;E2F1..5:-0.0766004583232;PRDM1:-0.0788297832828;ZIC1..3:-0.0914913478487;NFIL3:-0.112994225742;GATA6:-0.116469307892;RUNX1..3:-0.117816765482;NFKB1_REL_RELA:-0.126949377959;HMGA1,2:-0.135553312668;ALX1:-0.138128490639;PAX2:-0.151730142739;YY1:-0.169811254936;ZNF143:-0.175673752138;PAX4:-0.188582377284;HAND1,2:-0.189979215907;RFX1:-0.19109058199;ELF1,2,4:-0.194945442312;NRF1:-0.204038749537;ETS1,2:-0.205437847583;DMAP1_NCOR{1,2}_SMARC:-0.206523408631;FOXN1:-0.208737771276;PAX1,9:-0.230860291076;SOX5:-0.257247527238;TOPORS:-0.265407718018;MYB:-0.281998751246;LMO2:-0.284260565839;MYFfamily:-0.286297372616;RREB1:-0.300392141989;EP300:-0.326737204448;UFEwm:-0.345115311415;HNF4A_NR2F1,2:-0.345712366297;NKX2-3_NKX2-5:-0.35055285635;OCT4_SOX2{dimer}:-0.358766783163;STAT2,4,6:-0.360367699375;PAX6:-0.361527778053;POU1F1:-0.367100415483;TGIF1:-0.405708695857;SPIB:-0.417961288975;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.450101623373;NFY{A,B,C}:-0.461535725732;SPI1:-0.463103206791;ATF5_CREB3:-0.464795282644;HOX{A6,A7,B6,B7}:-0.477113760821;GATA4:-0.503802620945;PITX1..3:-0.515801944325;SOX2:-0.528154194386;EVI1:-0.536678933774;IRF1,2:-0.55886664937;CUX2:-0.597964470014;AIRE:-0.630371415859;FOX{D1,D2}:-0.637675786144;SREBF1,2:-0.64618333895;FOX{F1,F2,J1}:-0.671366971637;TEF:-0.676688097743;RORA:-0.687966664941;RFX2..5_RFXANK_RFXAP:-0.719713450493;BREu{core}:-0.75496112602;IRF7:-0.791409282736;NR6A1:-0.791775360997;ATF4:-0.791841551181;ZEB1:-0.806645025828;SNAI1..3:-0.817318495922;STAT1,3:-0.861995668013;NKX2-1,4:-0.881517547875;MYOD1:-0.897384389708;FOXP3:-0.96361390615;FOXA2:-1.01240941566;BPTF:-1.04382841024;ZBTB16:-1.07406217124;CDX1,2,4:-1.16341883224;IKZF2:-1.17369191091;T:-1.20952707474;FOXP1:-1.21940472811;FOXO1,3,4:-1.22446070071;FOXD3:-1.6708830007;RBPJ:-1.69245140791
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11210-116A4;search_select_hide=table117:FF:11210-116A4
}}
}}

Latest revision as of 16:24, 3 June 2020

Name:Smooth Muscle Cells - Aortic, donor0
Species:Human (Homo sapiens)
Library ID:CNhs10838
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueaorta
dev stage54 years old adult
sexmale
age54
cell typesmooth muscle cell
cell lineNA
companyCell Applications
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberCA354-R10a
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005794
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs10838 CAGE DRX008467 DRR009339
Accession ID Hg19

Library idBAMCTSS
CNhs10838 DRZ000764 DRZ002149
Accession ID Hg38

Library idBAMCTSS
CNhs10838 DRZ012114 DRZ013499
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload
HumanCAGEScan Download raw sequence, BAM & CTSS

Library id3prime-FASTQ5prime-FASTQBAMCTSS
NCig10018downloaddownloaddownloaddownload

RNA-Seq Accession numbers
MethodSample accession id
sRNA-Seq  SAMD00005794
Library accession numbers

Library idMethodExp. accession idRun accession id
SRhi10009.GTAGAG sRNA-Seq DRX037141 DRR041507
Accession ID Hg19

Library idBAMCTSS
SRhi10009.GTAGAG DRZ007149


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.102
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.0236
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.221
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.282
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.23
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.594
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.429
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.568
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth-0.0031
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.0609
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.23
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.323
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.715
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.23
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.203
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs10838

Jaspar motifP-value
MA0002.20.933
MA0003.10.513
MA0004.10.529
MA0006.10.131
MA0007.10.211
MA0009.10.528
MA0014.10.713
MA0017.10.446
MA0018.20.181
MA0019.10.347
MA0024.10.121
MA0025.10.733
MA0027.10.208
MA0028.10.29
MA0029.10.408
MA0030.10.665
MA0031.10.236
MA0035.20.768
MA0038.10.855
MA0039.20.925
MA0040.10.536
MA0041.10.389
MA0042.10.608
MA0043.10.232
MA0046.10.374
MA0047.20.753
MA0048.10.0866
MA0050.12.46633e-4
MA0051.10.168
MA0052.10.593
MA0055.10.0086
MA0057.10.731
MA0058.10.373
MA0059.10.965
MA0060.10.466
MA0061.10.916
MA0062.20.81
MA0065.20.0964
MA0066.10.928
MA0067.10.0934
MA0068.10.976
MA0069.10.426
MA0070.10.572
MA0071.10.508
MA0072.10.683
MA0073.10.992
MA0074.10.685
MA0076.10.167
MA0077.10.581
MA0078.10.434
MA0079.20.225
MA0080.20.00153
MA0081.10.425
MA0083.14.44978e-4
MA0084.10.227
MA0087.10.514
MA0088.10.436
MA0090.10.00533
MA0091.10.4
MA0092.10.317
MA0093.10.664
MA0099.27.40532e-16
MA0100.10.0965
MA0101.10.314
MA0102.20.968
MA0103.17.96857e-4
MA0104.20.0277
MA0105.10.453
MA0106.10.312
MA0107.10.516
MA0108.29.01263e-8
MA0111.12.55525e-4
MA0112.20.888
MA0113.10.539
MA0114.10.179
MA0115.10.805
MA0116.10.215
MA0117.10.954
MA0119.10.274
MA0122.10.76
MA0124.10.301
MA0125.10.55
MA0131.10.53
MA0135.10.776
MA0136.10.172
MA0137.20.858
MA0138.20.432
MA0139.10.828
MA0140.10.984
MA0141.10.764
MA0142.10.61
MA0143.10.699
MA0144.10.641
MA0145.10.294
MA0146.10.471
MA0147.10.133
MA0148.10.811
MA0149.10.913
MA0150.10.0352
MA0152.10.443
MA0153.10.777
MA0154.10.803
MA0155.10.0924
MA0156.10.513
MA0157.10.386
MA0159.10.332
MA0160.10.766
MA0162.10.133
MA0163.10.748
MA0164.10.496
MA0258.10.46
MA0259.10.463



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs10838

Novel motifP-value
10.765
100.192
1000.508
1010.0308
1020.494
1030.785
1040.477
1050.484
1060.439
1070.519
1080.428
1090.432
110.619
1100.898
1110.0789
1120.347
1130.0195
1140.555
1150.966
1160.0984
1170.408
1180.376
1190.99
120.208
1200.977
1210.507
1220.584
1230.0457
1240.421
1250.811
1260.672
1270.951
1280.822
1290.862
130.113
1300.0456
1310.374
1320.85
1330.229
1340.123
1350.166
1360.387
1370.932
1380.216
1390.94
140.369
1400.0801
1410.00707
1420.833
1430.0612
1440.627
1450.214
1460.397
1470.29
1480.219
1490.545
150.866
1500.304
1510.991
1520.00507
1530.503
1540.547
1550.0587
1560.761
1570.555
1580.0566
1590.41
160.985
1600.83
1610.163
1620.315
1630.568
1640.987
1650.878
1660.238
1670.296
1680.888
1690.316
170.673
180.43
190.906
20.403
200.355
210.511
220.325
230.242
240.103
250.0746
260.219
270.793
280.179
290.425
30.765
300.171
310.91
320.304
330.663
340.409
350.534
360.196
370.922
380.982
390.252
40.983
400.745
410.517
420.973
430.729
440.302
450.589
460.975
470.525
480.934
490.195
50.732
500.178
510.951
520.971
530.124
540.981
550.244
560.796
570.656
580.108
590.35
60.24
600.5
610.364
620.0747
630.44
640.658
650.635
660.366
670.865
680.295
690.397
70.336
700.983
710.913
720.579
730.00492
740.968
750.82
760.926
770.0879
780.121
790.765
80.598
800.929
810.789
820.146
830.717
840.776
850.889
860.694
870.0243
880.176
890.569
90.385
900.746
910.805
920.901
930.793
940.915
950.53
960.556
970.269
980.337
990.00496



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs10838


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002371 (somatic cell)
0000393 (electrically responsive cell)
0000183 (contractile cell)
0000187 (muscle cell)
0000192 (smooth muscle cell)
0000211 (electrically active cell)
0000255 (eukaryotic cell)
0000359 (vascular associated smooth muscle cell)
0002539 (aortic smooth muscle cell)

UBERON: Anatomy
0000468 (multi-cellular organism)
0001135 (smooth muscle tissue)
0000947 (aorta)
0001637 (artery)
0000483 (epithelium)
0000479 (tissue)
0000055 (vessel)
0004111 (anatomical conduit)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0003914 (epithelial tube)
0000025 (tube)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0004573 (systemic artery)
0002385 (muscle tissue)
0003509 (arterial blood vessel)
0007500 (epithelial tube open at both ends)
0001981 (blood vessel)
0004237 (blood vessel smooth muscle)
0004695 (arterial system smooth muscle)
0002049 (vasculature)
0010317 (germ layer / neural crest derived structure)
0002111 (artery smooth muscle tissue)
0007798 (vascular system)
0001015 (musculature)
0004178 (aorta smooth muscle tissue)
0002204 (musculoskeletal system)
0004535 (cardiovascular system)
0004571 (systemic arterial system)
0010191 (aortic system)
0000383 (musculature of body)
0004572 (arterial system)
0004537 (blood vasculature)
0001009 (circulatory system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000167 (smooth muscle cell sample)
0000168 (human aortic smooth muscle cell sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000355 (multi-potent skeletal muscle stem cell)
CL:0000222 (mesodermal cell)
CL:0000514 (smooth muscle myoblast)

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