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(Created page with "{{f5samples |id=FF:11289-117A2 |name=Smooth Muscle Cells - Subclavian Artery, donor1 |sample_id=11289 |rna_tube_id=117A2 |rna_box=117 |rna_position=A2 |sample_cell_lot=...")
 
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{{f5samples
{{f5samples
|id=FF:11289-117A2
|DRA_sample_Accession=CAGE@SAMD00005800
|name=Smooth Muscle Cells - Subclavian Artery, donor1
|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005800
|sample_id=11289
|accession_numbers=CAGE;DRX008501;DRR009373;DRZ000798;DRZ002183;DRZ012148;DRZ013533
|rna_tube_id=117A2
|accession_numbers_RNASeq=sRNA-Seq;DRX037048;DRR041414;DRZ007056
|rna_box=117
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001637,UBERON:0002100,UBERON:0000483,UBERON:0000479,UBERON:0000055,UBERON:0004111,UBERON:0000475,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0003914,UBERON:0000025,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0009569,UBERON:0004573,UBERON:0003834,UBERON:0003509,UBERON:0007500,UBERON:0001981,UBERON:0002049,UBERON:0003513,UBERON:0010317,UBERON:0007798,UBERON:0001533,UBERON:0004535,UBERON:0004571,UBERON:0000915,UBERON:0004572,UBERON:0004537,UBERON:0001009
|rna_position=A2
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002371,CL:0000393,CL:0000183,CL:0000187,CL:0000192,CL:0000211,CL:0000255,CL:0000359,CL:0002595
|sample_cell_lot=N/A
|sample_cell_catalog=N/A
|sample_company=Cell Applications
|rna_lot_number=2105.00000
|rna_catalog_number=CA3010-R10a
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_dev_stage=27 years old adult
|sample_tissue=subclavian artery
|sample_donor(cell lot)=
|sample_sex=female
|sample_age=27
|sample_ethnicity=H
|rna_rin=
|rna_od260/230=* A260/280:
|rna_od260/280=* cell type: [[cell type::smooth muscle cell]]
|sample_cell_type=smooth muscle cell
|sample_cell_line=
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
|sample_experimental_condition=
|sample_disease=
|rna_sample_type=total RNA
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0
|rna_weight_ug=10.00000
|rna_concentration=1.00000
|sample_note=
|profile_hcage=CNhs11090,LSID724,release008,COMPLETED
|profile_cagescan=,,,
|profile_srnaseq=SRhi10004,,,
|profile_rnaseq=,,,
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000004,CL:0000012,CL:0000034,CL:0000048,CL:0000055,CL:0000056,CL:0000144,CL:0000183,CL:0000187,CL:0000192,CL:0000211,CL:0000220,CL:0000222,CL:0000255,CL:0000355,CL:0000359,CL:0000393,CL:0000514,CL:0000548,CL:0000680,CL:0000723,CL:0002321,CL:0002371,CL:0002595
|ancestors_in_anatomy_facet=UBERON:0000025,UBERON:0000055,UBERON:0000061,UBERON:0000119,UBERON:0000383,UBERON:0000465,UBERON:0000467,UBERON:0000468,UBERON:0000475,UBERON:0000477,UBERON:0000479,UBERON:0000480,UBERON:0000481,UBERON:0000483,UBERON:0000486,UBERON:0000490,UBERON:0000914,UBERON:0000915,UBERON:0000922,UBERON:0000923,UBERON:0000926,UBERON:0001009,UBERON:0001015,UBERON:0001062,UBERON:0001134,UBERON:0001533,UBERON:0001637,UBERON:0001981,UBERON:0002036,UBERON:0002049,UBERON:0002050,UBERON:0002204,UBERON:0002329,UBERON:0002385,UBERON:0002532,UBERON:0003059,UBERON:0003077,UBERON:0003081,UBERON:0003082,UBERON:0003104,UBERON:0003509,UBERON:0003834,UBERON:0003914,UBERON:0004111,UBERON:0004120,UBERON:0004290,UBERON:0004535,UBERON:0004537,UBERON:0004571,UBERON:0004572,UBERON:0004573,UBERON:0004872,UBERON:0005291,UBERON:0005423,UBERON:0006965,UBERON:0007500,UBERON:0007798,UBERON:0009142
|ancestors_in_disease_facet=
|ancestors_in_disease_facet=
|sample_description=
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000167,FF:0000175
 
|comment=
|created_by=
|creation_date=
|data_phase=2
|datafreeze_phase=2
|def=
|expression_enrichment_score=chr9:132427883..132427951,+!p2@PRRX2!1.78!59.00!PRRX2;;chr9:132427972..132428056,+!p1@PRRX2!1.75!70.57!PRRX2;;chr8:55370487..55370503,+!p1@SOX17!1.69!47.97!SOX17;;chr7:27153454..27153469,-!p2@HOXA3!1.65!43.56!HOXA3;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.58!36.94!ZBED1;;chr7:27170359..27170381,-!p1@HOXA4!1.50!30.88!HOXA4;;chr18:19749541..19749557,+!p1@GATA6!1.46!84.91!GATA6;;chr11:46299199..46299233,+!p1@CREB3L1!1.44!131.22!CREB3L1;;chr11:46299539..46299620,+!p2@CREB3L1!1.44!44.66!CREB3L1;;chr18:53068911..53068935,-!p4@TCF4!1.42!28.67!TCF4;;chr2:239756671..239756732,+!p1@TWIST2!1.41!78.29!TWIST2;;chr11:65686802..65686818,+!p6@DRAP1!1.39!40.80!DRAP1;;chr4:174451370..174451387,-!p1@HAND2!1.39!23.71!HAND2;;chr19:13134772..13134822,+!p2@NFIX!1.38!33.63!NFIX;;chr1:170632285..170632309,+!p1@PRRX1!1.38!25.91!PRRX1;;chr22:19748231..19748317,+!p1@TBX1!1.38!23.16!TBX1;;chr19:47523058..47523114,+!p1@NPAS1!1.33!20.40!NPAS1;;chr16:86600426..86600441,+!p1@FOXC2!1.32!48.52!FOXC2;;chr16:86544113..86544145,+!p1@FOXF1!1.32!24.81!FOXF1;;chr20:6748325..6748352,+!p1@BMP2!1.31!28.12!BMP2;;chr18:19749386..19749404,+!p2@GATA6!1.31!27.57!GATA6;;chr7:27183291..27183324,-!p1@HOXA5!1.27!17.64!HOXA5;;chr6:10415276..10415341,-!p2@TFAP2A!1.26!20.95!TFAP2A;;chr1:170633348..170633399,+!p2@PRRX1!1.23!21.50!PRRX1;;chr3:25470156..25470227,+!p2@RARB!1.22!15.44!RARB;;chr7:27183263..27183284,-!p2@HOXA5!1.22!15.44!HOXA5;;chr6:10412600..10412637,-!p1@TFAP2A!1.21!25.36!TFAP2A;;chr7:27153428..27153440,-!p3@HOXA3!1.19!14.34!HOXA3;;chr4:174450089..174450153,-!p2@HAND2!1.19!14.34!HAND2;;chr15:57511609..57511651,+!p2@TCF12!1.18!23.71!TCF12;;chr1:170633262..170633285,+!p3@PRRX1!1.18!15.99!PRRX1;;chr6:34204921..34204939,+!p3@HMGA1!1.13!375.48!HMGA1;;chr12:124873357..124873401,-!p1@NCOR2!1.13!144.46!NCOR2;;chr2:239756739..239756755,+!p2@TWIST2!1.11!20.40!TWIST2;;chr7:27142290..27142310,-!p1@HOXA2!1.10!11.58!HOXA2;;chr2:121493425..121493474,+!p1@GLI2!1.09!24.81!GLI2;;chr11:65687362..65687436,+!p3@DRAP1!1.08!50.73!DRAP1;;chr3:25469815..25469866,+!p3@RARB!1.08!11.03!RARB;;chr7:27170274..27170308,-!p3@HOXA4!1.08!11.03!HOXA4;;chr8:106330656..106330684,+!p1@ZFPM2!1.07!28.67!ZFPM2;;chr5:72744445..72744466,-!p2@FOXD1!1.06!17.64!FOXD1;;chr12:53614115..53614154,-!p1@RARG!1.05!55.69!RARG;;chr17:1959369..1959388,+!p2@HIC1!1.05!27.57!HIC1;;chr2:121493492..121493537,+!p2@GLI2!1.02!15.99!GLI2;;chr8:106330696..106330719,+!p2@ZFPM2!1.00!11.58!ZFPM2;;chr4:81104985..81105005,+!p4@PRDM8!1.00!11.03!PRDM8;;chr4:81105027..81105039,+!p3@PRDM8!1.00!10.48!PRDM8;;chr14:62162258..62162269,+!p2@HIF1A!0.99!87.12!HIF1A;;chr11:65686732..65686756,+!p2@DRAP1!0.99!38.04!DRAP1;;chr15:96869114..96869160,+!p11@NR2F2!0.99!12.13!NR2F2;;chr2:172967621..172967637,-!p1@DLX2!0.98!23.71!DLX2;;chr2:85981073..85981091,+!p5@ATOH8!0.97!8.27!ATOH8;;chr11:46299443..46299459,+!p4@CREB3L1!0.97!8.27!CREB3L1;;chr6:10412576..10412599,-!p5@TFAP2A!0.97!8.27!TFAP2A;;chr7:27153590..27153608,-!p7@HOXA3!0.97!8.27!HOXA3;;chr7:27169801..27169844,-!p2@HOXA4!0.97!8.27!HOXA4;;chr1:8938709..8938720,-!p3@ENO1!0.94!385.96!ENO1;;chr15:67430351..67430366,+!p10@SMAD3!0.94!7.72!SMAD3;;chr15:67458491..67458505,+!p18@SMAD3!0.94!7.72!SMAD3;;chr5:72744594..72744609,-!p1@FOXD1!0.93!35.84!FOXD1;;chr5:321810..321877,+!p1@AHRR!0.92!24.26!AHRR;;chr19:13134457..13134462,+!p5@NFIX!0.92!13.23!NFIX;;chr3:128206762..128206781,-!p2@GATA2!0.91!46.87!GATA2;;chr12:124873852..124873881,-!p3@NCOR2!0.91!45.21!NCOR2;;chr7:27183191..27183214,-!p4@HOXA5!0.91!7.17!HOXA5;;chr17:46622070..46622109,-!p1@HOXB2!0.90!15.99!HOXB2;;chr20:30193083..30193098,+!p1@ID1!0.89!568.46!ID1;;chr14:62162285..62162296,+!p3@HIF1A!0.89!36.94!HIF1A;;chr10:131762504..131762555,-!p1@EBF3!0.88!6.62!EBF3;;chr16:86600870..86600921,+!p2@FOXC2!0.88!6.62!FOXC2;;chr2:85981107..85981120,+!p3@ATOH8!0.88!6.62!ATOH8;;chr7:27183325..27183338,-!p5@HOXA5!0.88!6.62!HOXA5;;chr1:23885981..23886002,-!p1@ID3!0.87!1190.95!ID3;;chr1:170632959..170632987,+!p4@PRRX1!0.87!7.17!PRRX1;;chr11:46299186..46299195,+!p3@CREB3L1!0.87!7.17!CREB3L1;;chr17:46622114..46622138,-!p4@HOXB2!0.86!9.92!HOXB2;;chr11:65667884..65667895,-!p2@FOSL1!0.85!24.81!FOSL1;;chr2:19558373..19558392,-!p1@OSR1!0.85!17.64!OSR1;;chr7:137686763..137686784,-!p5@CREB3L2!0.85!11.03!CREB3L2;;chr7:27170324..27170335,-!p7@HOXA4!0.85!6.07!HOXA4;;chr13:37494248..37494260,-!p3@SMAD9!0.85!6.07!SMAD9;;chr19:13135386..13135435,+!p4@NFIX!0.85!6.07!NFIX;;chr1:170632439..170632465,+!p11@PRRX1!0.85!6.07!PRRX1;;chr1:170632477..170632506,+!p6@PRRX1!0.85!6.07!PRRX1;;chr2:172967242..172967265,-!p2@DLX2!0.85!6.07!DLX2;;chr14:24837368..24837401,+!p1@NFATC4!0.83!14.34!NFATC4;;chr19:13136130..13136165,+!p6@NFIX!0.83!7.72!NFIX;;chr3:141105705..141105770,+!p4@ZBTB38!0.83!7.17!ZBTB38;;chr11:65687243..65687276,+!p8@DRAP1!0.82!7.72!DRAP1;;chr15:67418177..67418204,+!p9@SMAD3!0.81!5.51!SMAD3;;chr17:41622731..41622764,-!p5@ETV4!0.81!5.51!ETV4;;chr18:19749353..19749367,+!p4@GATA6!0.81!5.51!GATA6;;chr1:170632115..170632136,+!p9@PRRX1!0.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|ffid_belonging_in_development=CL:0000355,CL:0000222,CL:0000514
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|fonse_cell_line_closure=
Line 67: Line 43:
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|fonse_treatment_closure=
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|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Subclavian%2520Artery%252c%2520donor1.CNhs11090.11289-117A2.hg38.nobarcode.ctss.bed.gz
|id=FF:11289-117A2
|is_a=EFO:0002091;;FF:0000175
|is_obsolete=
|library_id=CNhs11090
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|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11289
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10004.GTCCGC.11289
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11289
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10004.GTCCGC.11289
|name=Smooth Muscle Cells - Subclavian Artery, donor1
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|rna_box=117
|rna_catalog_number=CA3010-R10a
|rna_concentration=1
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0
|rna_lot_number=2105
|rna_od260/230=
|rna_od260/280=
|rna_position=A2
|rna_rin=
|rna_sample_type=total RNA
|rna_tube_id=117A2
|rna_weight_ug=10
|rnaseq_library_id=SRhi10004.GTCCGC
|sample_age=27
|sample_category=primary cells
|sample_cell_catalog=N/A
|sample_cell_line=
|sample_cell_lot=N/A
|sample_cell_type=smooth muscle cell
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
|sample_company=Cell Applications
|sample_description=
|sample_dev_stage=27 years old adult
|sample_disease=
|sample_donor(cell lot)=
|sample_ethnicity=H
|sample_experimental_condition=
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;3.99835819066181e-209!GO:0005737;cytoplasm;1.99876921241137e-181!GO:0043231;intracellular membrane-bound organelle;1.31706365765264e-157!GO:0043226;organelle;1.31706365765264e-157!GO:0043229;intracellular organelle;1.94621376315226e-157!GO:0043227;membrane-bound organelle;2.99690792222654e-157!GO:0044444;cytoplasmic part;1.13310857000891e-133!GO:0044422;organelle part;4.33172728964363e-126!GO:0044446;intracellular organelle part;8.45604630138954e-125!GO:0032991;macromolecular complex;6.90596485826519e-85!GO:0005515;protein binding;2.463285255007e-78!GO:0044237;cellular metabolic process;1.23079331107391e-73!GO:0044238;primary metabolic process;3.04799138861369e-73!GO:0030529;ribonucleoprotein complex;3.30241929672598e-69!GO:0043170;macromolecule metabolic process;9.72804536706933e-66!GO:0005739;mitochondrion;3.98550752173877e-63!GO:0043233;organelle lumen;1.17462589215284e-62!GO:0031974;membrane-enclosed lumen;1.17462589215284e-62!GO:0044428;nuclear part;7.50305667896949e-56!GO:0031090;organelle membrane;8.75936536719448e-51!GO:0003723;RNA binding;6.02375073645304e-50!GO:0005634;nucleus;6.02375073645304e-50!GO:0019538;protein metabolic process;6.10211015317695e-47!GO:0005840;ribosome;3.88399191415423e-46!GO:0006412;translation;6.68855881198789e-46!GO:0043234;protein complex;1.74517822885061e-44!GO:0016043;cellular component organization and biogenesis;5.62179206217269e-43!GO:0044429;mitochondrial part;5.90944740127166e-43!GO:0044260;cellular macromolecule metabolic process;3.29744339312733e-42!GO:0009058;biosynthetic process;1.01292761780232e-41!GO:0003735;structural constituent of ribosome;1.45330351528376e-41!GO:0044267;cellular protein metabolic process;2.01582533242266e-41!GO:0044249;cellular biosynthetic process;5.8024358615769e-39!GO:0015031;protein transport;7.99879488025343e-39!GO:0031967;organelle envelope;5.74820140227434e-38!GO:0033036;macromolecule localization;1.0515194226299e-37!GO:0009059;macromolecule biosynthetic process;1.11709015134607e-37!GO:0031975;envelope;1.26915668591313e-37!GO:0005829;cytosol;2.17553484445663e-36!GO:0045184;establishment of protein localization;6.06801698448632e-36!GO:0008104;protein localization;2.59690327675178e-35!GO:0006396;RNA processing;8.33340270943266e-35!GO:0031981;nuclear lumen;8.41726013211371e-35!GO:0033279;ribosomal subunit;1.2154645830701e-34!GO:0043283;biopolymer metabolic process;1.53480605327078e-33!GO:0046907;intracellular transport;3.20401698279833e-31!GO:0005740;mitochondrial envelope;9.50358696636103e-29!GO:0006996;organelle organization and biogenesis;1.86211176899038e-28!GO:0010467;gene expression;1.37844054250199e-27!GO:0031966;mitochondrial membrane;2.69240861029338e-27!GO:0065003;macromolecular complex assembly;4.01434763931284e-27!GO:0006886;intracellular protein transport;1.95001969039538e-26!GO:0016071;mRNA metabolic process;3.17721911870513e-26!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;3.55968215855732e-26!GO:0005830;cytosolic ribosome (sensu Eukaryota);9.90051106526818e-26!GO:0043228;non-membrane-bound organelle;1.08947942620613e-25!GO:0043232;intracellular non-membrane-bound organelle;1.08947942620613e-25!GO:0019866;organelle inner membrane;1.30060453634711e-25!GO:0022607;cellular component assembly;1.55527849688154e-24!GO:0005743;mitochondrial inner membrane;2.14275214831275e-24!GO:0008380;RNA splicing;1.24759163197892e-23!GO:0022613;ribonucleoprotein complex biogenesis and assembly;2.03078883433068e-23!GO:0006397;mRNA processing;1.43142345925961e-22!GO:0005783;endoplasmic reticulum;1.48635880203893e-22!GO:0006259;DNA metabolic process;1.94178258569706e-21!GO:0005654;nucleoplasm;2.66899136516291e-21!GO:0012505;endomembrane system;4.89574154507262e-21!GO:0006119;oxidative phosphorylation;6.42009788270426e-21!GO:0044445;cytosolic part;8.65662047059122e-21!GO:0016462;pyrophosphatase activity;6.75733013807385e-20!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;8.63451175162125e-20!GO:0016817;hydrolase activity, acting on acid anhydrides;1.06696220352681e-19!GO:0017111;nucleoside-triphosphatase activity;1.35467384611408e-19!GO:0051649;establishment of cellular localization;2.8342437194621e-19!GO:0000166;nucleotide binding;2.943685500773e-19!GO:0044455;mitochondrial membrane part;3.25620857517286e-19!GO:0051641;cellular localization;3.63552152874762e-19!GO:0007049;cell cycle;9.54950531531875e-19!GO:0015934;large ribosomal subunit;1.7719127135747e-18!GO:0044432;endoplasmic reticulum part;2.47689739303561e-18!GO:0005681;spliceosome;7.0853553952412e-18!GO:0048770;pigment granule;7.53322746110272e-18!GO:0042470;melanosome;7.53322746110272e-18!GO:0044451;nucleoplasm part;1.60852383523216e-17!GO:0031980;mitochondrial lumen;1.60852383523216e-17!GO:0005759;mitochondrial matrix;1.60852383523216e-17!GO:0005794;Golgi apparatus;2.42971919170759e-17!GO:0006457;protein folding;3.38731339539551e-17!GO:0015935;small ribosomal subunit;3.71698319671622e-17!GO:0016874;ligase activity;2.09193244077868e-16!GO:0006512;ubiquitin cycle;2.11870489239217e-15!GO:0051186;cofactor metabolic process;2.92729668107542e-15!GO:0008134;transcription factor binding;4.57360469089282e-15!GO:0006605;protein targeting;4.97850283151527e-15!GO:0005746;mitochondrial respiratory chain;5.348194894666e-15!GO:0032553;ribonucleotide binding;8.97043845713562e-15!GO:0032555;purine ribonucleotide binding;8.97043845713562e-15!GO:0022402;cell cycle process;9.60720016018115e-15!GO:0017076;purine nucleotide binding;1.22747442282042e-14!GO:0044265;cellular macromolecule catabolic process;1.27435849707436e-14!GO:0000502;proteasome complex (sensu Eukaryota);2.56384532444951e-14!GO:0043285;biopolymer catabolic process;3.73917215893605e-14!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;3.99683791874747e-14!GO:0009057;macromolecule catabolic process;4.63644511504726e-14!GO:0000278;mitotic cell cycle;9.51952744540621e-14!GO:0022618;protein-RNA complex assembly;1.04637473890844e-13!GO:0005730;nucleolus;1.98331731657748e-13!GO:0050136;NADH dehydrogenase (quinone) activity;2.11148368583953e-13!GO:0003954;NADH dehydrogenase activity;2.11148368583953e-13!GO:0008137;NADH dehydrogenase (ubiquinone) activity;2.11148368583953e-13!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);2.16619173214575e-13!GO:0051603;proteolysis involved in cellular protein catabolic process;2.84042052966427e-13!GO:0019941;modification-dependent protein catabolic process;5.01564552801345e-13!GO:0043632;modification-dependent macromolecule catabolic process;5.01564552801345e-13!GO:0044248;cellular catabolic process;5.16303191439458e-13!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);6.06325246292203e-13!GO:0051082;unfolded protein binding;6.64917897766991e-13!GO:0044257;cellular protein catabolic process;6.8519994765219e-13!GO:0006511;ubiquitin-dependent protein catabolic process;7.99372477666574e-13!GO:0048193;Golgi vesicle transport;7.99372477666574e-13!GO:0042175;nuclear envelope-endoplasmic reticulum network;1.09513574753917e-12!GO:0043412;biopolymer modification;1.14998653576927e-12!GO:0030163;protein catabolic process;1.66562926221789e-12!GO:0005761;mitochondrial ribosome;2.47129522635475e-12!GO:0000313;organellar ribosome;2.47129522635475e-12!GO:0008135;translation factor activity, nucleic acid binding;3.13616046655439e-12!GO:0005789;endoplasmic reticulum membrane;3.1397528925374e-12!GO:0005524;ATP binding;5.59851458399989e-12!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;7.23321556126575e-12!GO:0030964;NADH dehydrogenase complex (quinone);8.36122715333964e-12!GO:0045271;respiratory chain complex I;8.36122715333964e-12!GO:0005747;mitochondrial respiratory chain complex I;8.36122715333964e-12!GO:0005793;ER-Golgi intermediate compartment;8.52023636997972e-12!GO:0032559;adenyl ribonucleotide binding;9.45858505555959e-12!GO:0042775;organelle ATP synthesis coupled electron transport;1.027900533209e-11!GO:0042773;ATP synthesis coupled electron transport;1.027900533209e-11!GO:0006464;protein modification process;1.5210992276466e-11!GO:0030554;adenyl nucleotide binding;1.76637171014848e-11!GO:0006732;coenzyme metabolic process;1.92526693424045e-11!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;2.66796576903224e-11!GO:0016192;vesicle-mediated transport;3.61326082716316e-11!GO:0003676;nucleic acid binding;3.76125268381635e-11!GO:0009259;ribonucleotide metabolic process;7.0050719446713e-11!GO:0006913;nucleocytoplasmic transport;1.04108993838648e-10!GO:0003712;transcription cofactor activity;2.28745012024041e-10!GO:0048523;negative regulation of cellular process;2.29000002464761e-10!GO:0009055;electron carrier activity;2.35228368235227e-10!GO:0051276;chromosome organization and biogenesis;2.43249997402792e-10!GO:0051169;nuclear transport;2.53247343489453e-10!GO:0006163;purine nucleotide metabolic process;3.06130667114566e-10!GO:0009150;purine ribonucleotide metabolic process;3.08212787599042e-10!GO:0005635;nuclear envelope;3.11880229056889e-10!GO:0042254;ribosome biogenesis and assembly;3.63941250888424e-10!GO:0006325;establishment and/or maintenance of chromatin architecture;3.67385774648459e-10!GO:0016887;ATPase activity;5.67741831205703e-10!GO:0000398;nuclear mRNA splicing, via spliceosome;7.66072784668424e-10!GO:0000375;RNA splicing, via transesterification reactions;7.66072784668424e-10!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;7.66072784668424e-10!GO:0031965;nuclear membrane;9.90780024538249e-10!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.00102278769695e-09!GO:0043687;post-translational protein modification;1.07077556443188e-09!GO:0008639;small protein conjugating enzyme activity;1.1227578070237e-09!GO:0044453;nuclear membrane part;1.15840580648348e-09!GO:0006323;DNA packaging;1.44343658757941e-09!GO:0042623;ATPase activity, coupled;1.63258365135955e-09!GO:0009260;ribonucleotide biosynthetic process;1.65268645600657e-09!GO:0007067;mitosis;1.69133625096255e-09!GO:0000087;M phase of mitotic cell cycle;1.70891458723903e-09!GO:0004842;ubiquitin-protein ligase activity;1.78791525343521e-09!GO:0009152;purine ribonucleotide biosynthetic process;1.86036073382361e-09!GO:0016491;oxidoreductase activity;1.8607958473495e-09!GO:0006164;purine nucleotide biosynthetic process;1.89461236270309e-09!GO:0006974;response to DNA damage stimulus;1.98089702985247e-09!GO:0003743;translation initiation factor activity;2.11370212087106e-09!GO:0016070;RNA metabolic process;2.70175781950798e-09!GO:0009199;ribonucleoside triphosphate metabolic process;3.11273644689418e-09!GO:0012501;programmed cell death;3.11411349347248e-09!GO:0005694;chromosome;3.19236107147389e-09!GO:0065004;protein-DNA complex assembly;3.36711456374849e-09!GO:0051726;regulation of cell cycle;3.60035539853822e-09!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;4.10840831783886e-09!GO:0019787;small conjugating protein ligase activity;4.32606669371393e-09!GO:0048519;negative regulation of biological process;4.60191920956741e-09!GO:0022403;cell cycle phase;4.76899652466215e-09!GO:0017038;protein import;4.87094286255583e-09!GO:0009141;nucleoside triphosphate metabolic process;5.15485438442121e-09!GO:0009205;purine ribonucleoside triphosphate metabolic process;5.23225592088444e-09!GO:0009144;purine nucleoside triphosphate metabolic process;5.23225592088444e-09!GO:0006915;apoptosis;5.4685896368195e-09!GO:0000074;regulation of progression through cell cycle;5.73101292513202e-09!GO:0005788;endoplasmic reticulum lumen;5.84827628143522e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;7.27305815543885e-09!GO:0006413;translational initiation;1.21373153643767e-08!GO:0006260;DNA replication;1.23780475184762e-08!GO:0016879;ligase activity, forming carbon-nitrogen bonds;1.33536106785363e-08!GO:0044427;chromosomal part;1.35904527904738e-08!GO:0015986;ATP synthesis coupled proton transport;1.7463733075362e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;1.7463733075362e-08!GO:0030120;vesicle coat;2.33666973831008e-08!GO:0030662;coated vesicle membrane;2.33666973831008e-08!GO:0006446;regulation of translational initiation;2.56714719254336e-08!GO:0008219;cell death;2.5986439474505e-08!GO:0016265;death;2.5986439474505e-08!GO:0016881;acid-amino acid ligase activity;2.77721310079587e-08!GO:0009142;nucleoside triphosphate biosynthetic process;2.86555840128414e-08!GO:0009201;ribonucleoside triphosphate biosynthetic process;2.86555840128414e-08!GO:0008565;protein transporter activity;2.91260302242288e-08!GO:0006333;chromatin assembly or disassembly;3.37337203849273e-08!GO:0046034;ATP metabolic process;3.41459533878666e-08!GO:0005643;nuclear pore;3.74823638630836e-08!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;4.95950967950731e-08!GO:0009145;purine nucleoside triphosphate biosynthetic process;4.95950967950731e-08!GO:0006888;ER to Golgi vesicle-mediated transport;5.31231680540691e-08!GO:0003924;GTPase activity;5.8242561922551e-08!GO:0016604;nuclear body;6.13677267063278e-08!GO:0006281;DNA repair;6.45452784807025e-08!GO:0006366;transcription from RNA polymerase II promoter;6.58914551926415e-08!GO:0009056;catabolic process;7.43366094698689e-08!GO:0009117;nucleotide metabolic process;7.9368708858022e-08!GO:0051301;cell division;7.94369908009936e-08!GO:0006399;tRNA metabolic process;8.63089212848577e-08!GO:0051188;cofactor biosynthetic process;9.27805528567597e-08!GO:0048475;coated membrane;1.00902588146929e-07!GO:0030117;membrane coat;1.00902588146929e-07!GO:0006334;nucleosome assembly;1.15226179028046e-07!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;1.15715587269325e-07!GO:0004812;aminoacyl-tRNA ligase activity;1.15715587269325e-07!GO:0016875;ligase activity, forming carbon-oxygen bonds;1.15715587269325e-07!GO:0009719;response to endogenous stimulus;1.27787729370278e-07!GO:0009060;aerobic respiration;1.55594003876059e-07!GO:0065002;intracellular protein transport across a membrane;1.88863631203014e-07!GO:0051246;regulation of protein metabolic process;1.89425011135646e-07!GO:0019829;cation-transporting ATPase activity;2.05066809549629e-07!GO:0043038;amino acid activation;2.27428501162284e-07!GO:0006418;tRNA aminoacylation for protein translation;2.27428501162284e-07!GO:0043039;tRNA aminoacylation;2.27428501162284e-07!GO:0006754;ATP biosynthetic process;2.87910898925719e-07!GO:0006753;nucleoside phosphate metabolic process;2.87910898925719e-07!GO:0006461;protein complex assembly;2.89130908167477e-07!GO:0046930;pore complex;3.0848375517462e-07!GO:0044431;Golgi apparatus part;3.89822422435296e-07!GO:0015078;hydrogen ion transmembrane transporter activity;4.54907656846571e-07!GO:0004386;helicase activity;4.56656285961584e-07!GO:0045333;cellular respiration;4.84238313991359e-07!GO:0031497;chromatin assembly;5.09320900764359e-07!GO:0006364;rRNA processing;5.65653517243245e-07!GO:0000785;chromatin;5.77508102982104e-07!GO:0016740;transferase activity;6.63937611671226e-07!GO:0008026;ATP-dependent helicase activity;7.74378292458066e-07!GO:0043069;negative regulation of programmed cell death;7.81192449221531e-07!GO:0016072;rRNA metabolic process;9.2977445701806e-07!GO:0000279;M phase;9.53490878791232e-07!GO:0016023;cytoplasmic membrane-bound vesicle;9.90183260819409e-07!GO:0005768;endosome;1.00771859439358e-06!GO:0016787;hydrolase activity;1.39235860422076e-06!GO:0031988;membrane-bound vesicle;1.48662728525205e-06!GO:0043066;negative regulation of apoptosis;1.4918586021711e-06!GO:0043067;regulation of programmed cell death;1.61388701820286e-06!GO:0030532;small nuclear ribonucleoprotein complex;1.81617920451628e-06!GO:0006916;anti-apoptosis;1.92132998324605e-06!GO:0015630;microtubule cytoskeleton;2.02009896970367e-06!GO:0005667;transcription factor complex;2.02009896970367e-06!GO:0042981;regulation of apoptosis;2.03996730278803e-06!GO:0051170;nuclear import;2.17375176852563e-06!GO:0016469;proton-transporting two-sector ATPase complex;2.37991187698591e-06!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;2.85653001509362e-06!GO:0006606;protein import into nucleus;2.86439972923224e-06!GO:0050794;regulation of cellular process;3.25344727410071e-06!GO:0016607;nuclear speck;3.30926525763194e-06!GO:0051187;cofactor catabolic process;4.37519824139784e-06!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;4.45235541874306e-06!GO:0006099;tricarboxylic acid cycle;4.7548815300362e-06!GO:0046356;acetyl-CoA catabolic process;4.7548815300362e-06!GO:0003714;transcription corepressor activity;4.80880920464138e-06!GO:0006091;generation of precursor metabolites and energy;6.02543026493906e-06!GO:0009108;coenzyme biosynthetic process;6.15519773736136e-06!GO:0031252;leading edge;6.19586557373053e-06!GO:0007005;mitochondrion organization and biogenesis;6.60587892594141e-06!GO:0006752;group transfer coenzyme metabolic process;6.6956471894044e-06!GO:0045259;proton-transporting ATP synthase complex;7.61397145109797e-06!GO:0045786;negative regulation of progression through cell cycle;7.6597269233207e-06!GO:0016567;protein ubiquitination;7.75093378534544e-06!GO:0005839;proteasome core complex (sensu Eukaryota);7.86035906361655e-06!GO:0006403;RNA localization;8.0852063758144e-06!GO:0050657;nucleic acid transport;8.20759933893884e-06!GO:0051236;establishment of RNA localization;8.20759933893884e-06!GO:0050658;RNA transport;8.20759933893884e-06!GO:0006084;acetyl-CoA metabolic process;9.01959788561271e-06!GO:0032446;protein modification by small protein conjugation;9.13126150337085e-06!GO:0005905;coated pit;9.13126150337085e-06!GO:0031410;cytoplasmic vesicle;9.62434952828287e-06!GO:0006793;phosphorus metabolic process;9.62434952828287e-06!GO:0006796;phosphate metabolic process;9.62434952828287e-06!GO:0016563;transcription activator activity;1.02927483501926e-05!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;1.0479047391862e-05!GO:0031982;vesicle;1.06721876515549e-05!GO:0007249;I-kappaB kinase/NF-kappaB cascade;1.10161034909917e-05!GO:0031324;negative regulation of cellular metabolic process;1.11908936519652e-05!GO:0000151;ubiquitin ligase complex;1.20632551429271e-05!GO:0003697;single-stranded DNA binding;1.23167045248493e-05!GO:0009109;coenzyme catabolic process;1.23167045248493e-05!GO:0005798;Golgi-associated vesicle;1.25588640855067e-05!GO:0005773;vacuole;1.32959576017045e-05!GO:0016772;transferase activity, transferring phosphorus-containing groups;1.33149653654668e-05!GO:0043566;structure-specific DNA binding;1.34408374772291e-05!GO:0008361;regulation of cell size;1.70886496939899e-05!GO:0005525;GTP binding;2.05411472469759e-05!GO:0000139;Golgi membrane;2.07139256778726e-05!GO:0016049;cell growth;2.20533434759217e-05!GO:0019867;outer membrane;2.30212804089806e-05!GO:0031968;organelle outer membrane;2.33902964641206e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;2.36237004910131e-05!GO:0003713;transcription coactivator activity;2.47795858790877e-05!GO:0008654;phospholipid biosynthetic process;2.65176850251348e-05!GO:0001558;regulation of cell growth;2.74325588758036e-05!GO:0045454;cell redox homeostasis;3.11646137377765e-05!GO:0044440;endosomal part;3.14715494405433e-05!GO:0010008;endosome membrane;3.14715494405433e-05!GO:0016779;nucleotidyltransferase activity;3.37306716958274e-05!GO:0016568;chromatin modification;3.47914153880452e-05!GO:0016853;isomerase activity;3.66816692637841e-05!GO:0030867;rough endoplasmic reticulum membrane;3.79460961718061e-05!GO:0005762;mitochondrial large ribosomal subunit;4.08179774419007e-05!GO:0000315;organellar large ribosomal subunit;4.08179774419007e-05!GO:0016310;phosphorylation;4.53701026872719e-05!GO:0015980;energy derivation by oxidation of organic compounds;4.79069027026801e-05!GO:0009892;negative regulation of metabolic process;5.05510491310678e-05!GO:0030036;actin cytoskeleton organization and biogenesis;5.27803652894594e-05!GO:0004298;threonine endopeptidase activity;5.48646801724737e-05!GO:0033116;ER-Golgi intermediate compartment membrane;5.56521423857508e-05!GO:0005770;late endosome;5.66759890478664e-05!GO:0006613;cotranslational protein targeting to membrane;5.77818123009191e-05!GO:0016564;transcription repressor activity;5.95940564254276e-05!GO:0003724;RNA helicase activity;6.25421763866734e-05!GO:0000245;spliceosome assembly;7.34892244821426e-05!GO:0005741;mitochondrial outer membrane;7.90522904239566e-05!GO:0051329;interphase of mitotic cell cycle;8.09667432782086e-05!GO:0048522;positive regulation of cellular process;9.19535271229682e-05!GO:0032561;guanyl ribonucleotide binding;9.96644175965769e-05!GO:0019001;guanyl nucleotide binding;9.96644175965769e-05!GO:0005048;signal sequence binding;0.000107624579102897!GO:0000786;nucleosome;0.000108375040291764!GO:0006414;translational elongation;0.000110317674187847!GO:0051789;response to protein stimulus;0.0001383306265157!GO:0006986;response to unfolded protein;0.0001383306265157!GO:0000323;lytic vacuole;0.000142822697768034!GO:0005764;lysosome;0.000142822697768034!GO:0030176;integral to endoplasmic reticulum membrane;0.00014302947915555!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.000146477759440268!GO:0044262;cellular carbohydrate metabolic process;0.000153266250157544!GO:0043284;biopolymer biosynthetic process;0.000156493043209245!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.00016853210571247!GO:0043623;cellular protein complex assembly;0.000177459108645345!GO:0003899;DNA-directed RNA polymerase activity;0.000191719112753465!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.000191719112753465!GO:0051028;mRNA transport;0.00019774847519497!GO:0005819;spindle;0.000202899579841474!GO:0009165;nucleotide biosynthetic process;0.000240673859916778!GO:0050789;regulation of biological process;0.000290947162943482!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000302941943866927!GO:0051325;interphase;0.000311435184340747!GO:0005813;centrosome;0.0003323175047666!GO:0007010;cytoskeleton organization and biogenesis;0.000354166944751754!GO:0030029;actin filament-based process;0.000375945676835994!GO:0008250;oligosaccharyl transferase complex;0.000398463377900579!GO:0051427;hormone receptor binding;0.000402871767182998!GO:0030133;transport vesicle;0.00041633627929005!GO:0005769;early endosome;0.000425008931163937!GO:0005815;microtubule organizing center;0.000500889273058645!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000559132984891059!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000614848478766976!GO:0004576;oligosaccharyl transferase activity;0.000653768706977853!GO:0030663;COPI coated vesicle membrane;0.000655981754779554!GO:0030126;COPI vesicle coat;0.000655981754779554!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000659986791570874!GO:0007264;small GTPase mediated signal transduction;0.000666758767089814!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000712659025459772!GO:0005885;Arp2/3 protein complex;0.000713908617888779!GO:0016859;cis-trans isomerase activity;0.0007266550826396!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.000778799107643928!GO:0035257;nuclear hormone receptor binding;0.000804330115507827!GO:0051920;peroxiredoxin activity;0.000826595833126129!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.000850856852217642!GO:0015399;primary active transmembrane transporter activity;0.000850856852217642!GO:0040008;regulation of growth;0.000876066319569168!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000936125183825978!GO:0006612;protein targeting to membrane;0.000941294777106391!GO:0030137;COPI-coated vesicle;0.00094962659723435!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.000956114563953667!GO:0030132;clathrin coat of coated pit;0.000991536658261788!GO:0008186;RNA-dependent ATPase activity;0.000991536658261788!GO:0065009;regulation of a molecular function;0.00104077021085357!GO:0046474;glycerophospholipid biosynthetic process;0.00108801037673027!GO:0019899;enzyme binding;0.00110600543566872!GO:0005791;rough endoplasmic reticulum;0.00111840692293063!GO:0043021;ribonucleoprotein binding;0.00115037740228545!GO:0019843;rRNA binding;0.0011597956106405!GO:0043681;protein import into mitochondrion;0.0011597956106405!GO:0006950;response to stress;0.0011908364871062!GO:0000314;organellar small ribosomal subunit;0.00119520474197282!GO:0005763;mitochondrial small ribosomal subunit;0.00119520474197282!GO:0016481;negative regulation of transcription;0.00128807678963449!GO:0030659;cytoplasmic vesicle membrane;0.00158430959040921!GO:0018196;peptidyl-asparagine modification;0.00161610434535414!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00161610434535414!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.0016484802254967!GO:0046483;heterocycle metabolic process;0.00170675020486273!GO:0051168;nuclear export;0.00171124350030489!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.00173253399282972!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00176260975544893!GO:0000059;protein import into nucleus, docking;0.00179788245325072!GO:0042802;identical protein binding;0.00185402740997618!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.00192229161903427!GO:0045941;positive regulation of transcription;0.00203480427134006!GO:0030118;clathrin coat;0.00223254811277622!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00227412776470479!GO:0030658;transport vesicle membrane;0.00228741351871182!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00231961222350853!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00231961222350853!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00231961222350853!GO:0007050;cell cycle arrest;0.00241089232373454!GO:0004004;ATP-dependent RNA helicase activity;0.00247775947891597!GO:0045893;positive regulation of transcription, DNA-dependent;0.00248159130686053!GO:0048487;beta-tubulin binding;0.00250546538394827!GO:0006839;mitochondrial transport;0.00262355850077201!GO:0007243;protein kinase cascade;0.00262355850077201!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00266459491977379!GO:0006082;organic acid metabolic process;0.00266751026122776!GO:0008092;cytoskeletal protein binding;0.0027049132800346!GO:0007006;mitochondrial membrane organization and biogenesis;0.00278411816959844!GO:0019752;carboxylic acid metabolic process;0.00285252259842291!GO:0031543;peptidyl-proline dioxygenase activity;0.00306151598498174!GO:0048518;positive regulation of biological process;0.00327505143153912!GO:0046489;phosphoinositide biosynthetic process;0.00345589326607289!GO:0006261;DNA-dependent DNA replication;0.00345949670373909!GO:0030127;COPII vesicle coat;0.00351885402671291!GO:0012507;ER to Golgi transport vesicle membrane;0.00351885402671291!GO:0006626;protein targeting to mitochondrion;0.0035252022184417!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00356924657463617!GO:0006595;polyamine metabolic process;0.00357711316254018!GO:0030134;ER to Golgi transport vesicle;0.00359393546792381!GO:0044433;cytoplasmic vesicle part;0.00366315168660812!GO:0003684;damaged DNA binding;0.00376667439431928!GO:0005874;microtubule;0.00376667439431928!GO:0031418;L-ascorbic acid binding;0.00378246326890264!GO:0048471;perinuclear region of cytoplasm;0.00378246326890264!GO:0016044;membrane organization and biogenesis;0.0038060944405261!GO:0006383;transcription from RNA polymerase III promoter;0.00385066030032821!GO:0043492;ATPase activity, coupled to movement of substances;0.00389432663203745!GO:0008139;nuclear localization sequence binding;0.0040245747369934!GO:0017166;vinculin binding;0.00429087671687251!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.00434733749497865!GO:0046467;membrane lipid biosynthetic process;0.00439705630526338!GO:0030521;androgen receptor signaling pathway;0.00449572663295786!GO:0007051;spindle organization and biogenesis;0.00461557593252792!GO:0015631;tubulin binding;0.00479665899360056!GO:0030027;lamellipodium;0.00487666201262249!GO:0006007;glucose catabolic process;0.004942595223358!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.00504168722335783!GO:0019798;procollagen-proline dioxygenase activity;0.00509316584448169!GO:0045792;negative regulation of cell size;0.00529302812018454!GO:0003682;chromatin binding;0.00568480958889156!GO:0006740;NADPH regeneration;0.00585215768537131!GO:0006098;pentose-phosphate shunt;0.00585215768537131!GO:0030660;Golgi-associated vesicle membrane;0.00614730524980849!GO:0030308;negative regulation of cell growth;0.00637400363323379!GO:0006979;response to oxidative stress;0.00687210389113876!GO:0000082;G1/S transition of mitotic cell cycle;0.00708635066139689!GO:0006891;intra-Golgi vesicle-mediated transport;0.00734970559843505!GO:0007040;lysosome organization and biogenesis;0.0074561393673394!GO:0016363;nuclear matrix;0.00752509947226327!GO:0031072;heat shock protein binding;0.00760366124376148!GO:0015992;proton transport;0.00762141525538876!GO:0048468;cell development;0.00783348211910606!GO:0051045;negative regulation of membrane protein ectodomain proteolysis;0.00805869529375126!GO:0051043;regulation of membrane protein ectodomain proteolysis;0.00805869529375126!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00819381609831926!GO:0051252;regulation of RNA metabolic process;0.008550471119393!GO:0006818;hydrogen transport;0.0087663872274975!GO:0006778;porphyrin metabolic process;0.00878471905155654!GO:0033013;tetrapyrrole metabolic process;0.00878471905155654!GO:0006352;transcription initiation;0.00927329052441642!GO:0008632;apoptotic program;0.00945948234405469!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0094826825355781!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0094826825355781!GO:0030880;RNA polymerase complex;0.00961056991446923!GO:0048500;signal recognition particle;0.00964831531206332!GO:0004177;aminopeptidase activity;0.00965271244297183!GO:0008610;lipid biosynthetic process;0.00974168473692153!GO:0003678;DNA helicase activity;0.0102503873810806!GO:0003729;mRNA binding;0.0103465084803076!GO:0003690;double-stranded DNA binding;0.0103916970815091!GO:0043488;regulation of mRNA stability;0.0103916970815091!GO:0043487;regulation of RNA stability;0.0103916970815091!GO:0030119;AP-type membrane coat adaptor complex;0.0104016733181066!GO:0012506;vesicle membrane;0.010598194347699!GO:0042168;heme metabolic process;0.0107741096885366!GO:0051539;4 iron, 4 sulfur cluster binding;0.0109123833975035!GO:0022890;inorganic cation transmembrane transporter activity;0.0109965666023773!GO:0035258;steroid hormone receptor binding;0.011282837300316!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.011565211503719!GO:0046519;sphingoid metabolic process;0.0117686327755005!GO:0065007;biological regulation;0.0118009351377277!GO:0019206;nucleoside kinase activity;0.0119777520079867!GO:0019318;hexose metabolic process;0.0126832738389217!GO:0005996;monosaccharide metabolic process;0.012736726438851!GO:0005657;replication fork;0.0128182239129267!GO:0005862;muscle thin filament tropomyosin;0.0128182239129267!GO:0045892;negative regulation of transcription, DNA-dependent;0.0130743683301861!GO:0005869;dynactin complex;0.0132257684530247!GO:0030518;steroid hormone receptor signaling pathway;0.0133285718100068!GO:0030125;clathrin vesicle coat;0.0138750469037762!GO:0030665;clathrin coated vesicle membrane;0.0138750469037762!GO:0003746;translation elongation factor activity;0.0139803109299522!GO:0007242;intracellular signaling cascade;0.0140258268687087!GO:0007033;vacuole organization and biogenesis;0.0141510268255521!GO:0008094;DNA-dependent ATPase activity;0.0141510268255521!GO:0005684;U2-dependent spliceosome;0.0144682289411927!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0146127616969727!GO:0030131;clathrin adaptor complex;0.0148190681850258!GO:0031227;intrinsic to endoplasmic reticulum membrane;0.0148536450248503!GO:0051540;metal cluster binding;0.0153964142935638!GO:0051536;iron-sulfur cluster binding;0.0153964142935638!GO:0006497;protein amino acid lipidation;0.0154649124140327!GO:0006289;nucleotide-excision repair;0.0154649124140327!GO:0016628;oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor;0.0154649124140327!GO:0008047;enzyme activator activity;0.0155094833756109!GO:0006402;mRNA catabolic process;0.0157115157521621!GO:0005774;vacuolar membrane;0.0159760955496246!GO:0050662;coenzyme binding;0.0160069256711599!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0161473795942143!GO:0000775;chromosome, pericentric region;0.0161473795942143!GO:0016301;kinase activity;0.0172323009268654!GO:0006611;protein export from nucleus;0.0178201607959789!GO:0006509;membrane protein ectodomain proteolysis;0.0180388790528598!GO:0033619;membrane protein proteolysis;0.0180388790528598!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0188655752265885!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.0191686334983043!GO:0000428;DNA-directed RNA polymerase complex;0.0191686334983043!GO:0016281;eukaryotic translation initiation factor 4F complex;0.0197881839315808!GO:0004674;protein serine/threonine kinase activity;0.0201062994226347!GO:0000075;cell cycle checkpoint;0.0201325860099298!GO:0001726;ruffle;0.0202859622011544!GO:0005832;chaperonin-containing T-complex;0.0203193373764765!GO:0043433;negative regulation of transcription factor activity;0.0204632028305431!GO:0006118;electron transport;0.0206951150041818!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0209008643168538!GO:0045047;protein targeting to ER;0.0209008643168538!GO:0030041;actin filament polymerization;0.021495285851606!GO:0008154;actin polymerization and/or depolymerization;0.0219921422474082!GO:0008180;signalosome;0.0220241553931406!GO:0000049;tRNA binding;0.0221521278030491!GO:0003711;transcription elongation regulator activity;0.0222517438024285!GO:0006417;regulation of translation;0.0222751981397678!GO:0001666;response to hypoxia;0.0222808557156548!GO:0006520;amino acid metabolic process;0.0222999917195237!GO:0007265;Ras protein signal transduction;0.0228259962304529!GO:0022415;viral reproductive process;0.0233766255738397!GO:0050811;GABA receptor binding;0.0235852575648767!GO:0051059;NF-kappaB binding;0.0243552530084756!GO:0006401;RNA catabolic process;0.0244377512697372!GO:0033673;negative regulation of kinase activity;0.0247212296468209!GO:0006469;negative regulation of protein kinase activity;0.0247212296468209!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0247856144564201!GO:0015002;heme-copper terminal oxidase activity;0.0247856144564201!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0247856144564201!GO:0004129;cytochrome-c oxidase activity;0.0247856144564201!GO:0009112;nucleobase metabolic process;0.0248689384263373!GO:0001527;microfibril;0.0249794370090775!GO:0031301;integral to organelle membrane;0.0250334401296077!GO:0016584;nucleosome positioning;0.0253090422794266!GO:0008022;protein C-terminus binding;0.0256611640492823!GO:0046365;monosaccharide catabolic process;0.0257463223343991!GO:0031124;mRNA 3'-end processing;0.0257463223343991!GO:0006779;porphyrin biosynthetic process;0.0258624972980801!GO:0033014;tetrapyrrole biosynthetic process;0.0258624972980801!GO:0000030;mannosyltransferase activity;0.0259978576325263!GO:0006672;ceramide metabolic process;0.0260591559960771!GO:0016616;oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor;0.0262932977359699!GO:0006650;glycerophospholipid metabolic process;0.0269727427238516!GO:0031529;ruffle organization and biogenesis;0.0270383005944053!GO:0008312;7S RNA binding;0.0271430153420505!GO:0003756;protein disulfide isomerase activity;0.0272893098825157!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0272893098825157!GO:0051087;chaperone binding;0.0272893098825157!GO:0050790;regulation of catalytic activity;0.0278848572232306!GO:0000209;protein polyubiquitination;0.028197111423374!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.0282340191263056!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0282858202332079!GO:0051101;regulation of DNA binding;0.0285528448570994!GO:0030433;ER-associated protein catabolic process;0.0290256839667371!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0290256839667371!GO:0008033;tRNA processing;0.0294014622191118!GO:0051348;negative regulation of transferase activity;0.0294264916300873!GO:0009889;regulation of biosynthetic process;0.0304066172521666!GO:0044452;nucleolar part;0.0304399828785549!GO:0000339;RNA cap binding;0.0305006209491312!GO:0030128;clathrin coat of endocytic vesicle;0.0306098055512103!GO:0030669;clathrin-coated endocytic vesicle membrane;0.0306098055512103!GO:0030122;AP-2 adaptor complex;0.0306098055512103!GO:0045926;negative regulation of growth;0.0309172809993072!GO:0006405;RNA export from nucleus;0.0309502426673633!GO:0006506;GPI anchor biosynthetic process;0.0314296843415836!GO:0031272;regulation of pseudopodium formation;0.0314351906523243!GO:0031269;pseudopodium formation;0.0314351906523243!GO:0031344;regulation of cell projection organization and biogenesis;0.0314351906523243!GO:0031268;pseudopodium organization and biogenesis;0.0314351906523243!GO:0031346;positive regulation of cell projection organization and biogenesis;0.0314351906523243!GO:0031274;positive regulation of pseudopodium formation;0.0314351906523243!GO:0006783;heme biosynthetic process;0.031553601169895!GO:0044437;vacuolar part;0.0316604605762475!GO:0043022;ribosome binding;0.0318767768016017!GO:0045334;clathrin-coated endocytic vesicle;0.0320126936215025!GO:0007346;regulation of progression through mitotic cell cycle;0.0322999196649926!GO:0008538;proteasome activator activity;0.0324780324379055!GO:0032507;maintenance of cellular protein localization;0.0325493193404523!GO:0006635;fatty acid beta-oxidation;0.0328227960905368!GO:0048144;fibroblast proliferation;0.0332850052545741!GO:0048145;regulation of fibroblast proliferation;0.0332850052545741!GO:0007088;regulation of mitosis;0.0334981479451705!GO:0051128;regulation of cellular component organization and biogenesis;0.0346301452807065!GO:0006378;mRNA polyadenylation;0.0346301452807065!GO:0009303;rRNA transcription;0.0358086653264164!GO:0000096;sulfur amino acid metabolic process;0.0359424157507466!GO:0050681;androgen receptor binding;0.0359492477453824!GO:0009967;positive regulation of signal transduction;0.0359841741684009!GO:0004003;ATP-dependent DNA helicase activity;0.0361115449169806!GO:0035035;histone acetyltransferase binding;0.0368155521405012!GO:0019320;hexose catabolic process;0.0370466885501168!GO:0051098;regulation of binding;0.0370676045673851!GO:0043189;H4/H2A histone acetyltransferase complex;0.0371239548036303!GO:0006096;glycolysis;0.0371595057659928!GO:0032508;DNA duplex unwinding;0.0371869761595463!GO:0032392;DNA geometric change;0.0371869761595463!GO:0046822;regulation of nucleocytoplasmic transport;0.0372083712722095!GO:0032906;transforming growth factor-beta2 production;0.0372083712722095!GO:0032909;regulation of transforming growth factor-beta2 production;0.0372083712722095!GO:0030522;intracellular receptor-mediated signaling pathway;0.0375529370856565!GO:0006739;NADP metabolic process;0.0378817307684835!GO:0008147;structural constituent of bone;0.0380688709230785!GO:0006002;fructose 6-phosphate metabolic process;0.0385664512875775!GO:0030384;phosphoinositide metabolic process;0.0391039513056578!GO:0006897;endocytosis;0.0392064700672741!GO:0010324;membrane invagination;0.0392064700672741!GO:0051287;NAD binding;0.0394201723428862!GO:0016776;phosphotransferase activity, phosphate group as acceptor;0.0397017959679543!GO:0006693;prostaglandin metabolic process;0.0397017959679543!GO:0006692;prostanoid metabolic process;0.0397017959679543!GO:0035267;NuA4 histone acetyltransferase complex;0.0397017959679543!GO:0031625;ubiquitin protein ligase binding;0.0397017959679543!GO:0051235;maintenance of localization;0.0399958677937702!GO:0031902;late endosome membrane;0.0399958677937702!GO:0045936;negative regulation of phosphate metabolic process;0.0403301701210292!GO:0006807;nitrogen compound metabolic process;0.0406723999862389!GO:0006607;NLS-bearing substrate import into nucleus;0.0408715652246128!GO:0006220;pyrimidine nucleotide metabolic process;0.0409940938168975!GO:0042158;lipoprotein biosynthetic process;0.0410478564545413!GO:0046588;negative regulation of calcium-dependent cell-cell adhesion;0.0411354297084019!GO:0046586;regulation of calcium-dependent cell-cell adhesion;0.0411354297084019!GO:0016614;oxidoreductase activity, acting on CH-OH group of donors;0.0411731706574259!GO:0006376;mRNA splice site selection;0.0411731706574259!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0411731706574259!GO:0008243;plasminogen activator activity;0.0414942035871432!GO:0004656;procollagen-proline 4-dioxygenase activity;0.0421426464396249!GO:0031545;peptidyl-proline 4-dioxygenase activity;0.0421426464396249!GO:0006354;RNA elongation;0.042381459103492!GO:0016860;intramolecular oxidoreductase activity;0.0425441285049687!GO:0006505;GPI anchor metabolic process;0.0425441285049687!GO:0005096;GTPase activator activity;0.0426881456199632!GO:0046164;alcohol catabolic process;0.0426881456199632!GO:0016408;C-acyltransferase activity;0.0428756036436718!GO:0006984;ER-nuclear signaling pathway;0.0432655330629946!GO:0005669;transcription factor TFIID complex;0.0436383353289901!GO:0030911;TPR domain binding;0.0438053269597531!GO:0008475;procollagen-lysine 5-dioxygenase activity;0.043865969250095!GO:0030149;sphingolipid catabolic process;0.043865969250095!GO:0005637;nuclear inner membrane;0.0444370257750134!GO:0031326;regulation of cellular biosynthetic process;0.0445919543707455!GO:0005784;translocon complex;0.0458896224862857!GO:0005586;collagen type III;0.0472391322331464!GO:0019222;regulation of metabolic process;0.0475099617105704!GO:0022408;negative regulation of cell-cell adhesion;0.0482577889687548!GO:0048146;positive regulation of fibroblast proliferation;0.0486884373731955!GO:0050178;phenylpyruvate tautomerase activity;0.0492156034011238!GO:0007030;Golgi organization and biogenesis;0.0492308740784631!GO:0015036;disulfide oxidoreductase activity;0.0492365915840018!GO:0045185;maintenance of protein localization;0.0493106504539834!GO:0003923;GPI-anchor transamidase activity;0.0493106504539834!GO:0016255;attachment of GPI anchor to protein;0.0493106504539834!GO:0042765;GPI-anchor transamidase complex;0.0493106504539834!GO:0000123;histone acetyltransferase complex;0.0493106504539834!GO:0006284;base-excision repair;0.0495249194303202
|sample_id=11289
|sample_note=
|sample_sex=female
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_tissue=subclavian artery
|top_motifs=HIF1A:1.88352492585;GZF1:1.63750191134;FOX{I1,J2}:1.62282103579;GTF2A1,2:1.58431770983;PBX1:1.34378735214;GLI1..3:1.25376873606;NKX3-1:1.15186440892;XCPE1{core}:1.09992013701;ZNF238:1.07273769672;IKZF1:1.02742595874;NFE2L1:0.990620592241;PPARG:0.978784295557;ZNF423:0.930757182078;POU2F1..3:0.892618740704;HOX{A5,B5}:0.84927131626;TFAP4:0.82319091584;TLX1..3_NFIC{dimer}:0.820525088395;EBF1:0.813222328921;TBP:0.78294130712;POU6F1:0.778953552521;TAL1_TCF{3,4,12}:0.761353542078;HMX1:0.751607358433;ESR1:0.746662743918;TP53:0.729624876403;ZIC1..3:0.724652627074;ATF6:0.717008858244;GCM1,2:0.70674415486;AHR_ARNT_ARNT2:0.702288414189;NANOG{mouse}:0.698061068548;HIC1:0.68542507562;SRF:0.673876802747;HES1:0.660461234635;NFIX:0.658825583611;MAFB:0.63378380946;ZBTB6:0.628392099413;PAX1,9:0.59154804365;GTF2I:0.589717443507;CRX:0.557961399174;NFATC1..3:0.557771959506;NFE2L2:0.545025881683;PATZ1:0.543048283209;TFCP2:0.532917574847;RXRA_VDR{dimer}:0.52046590205;TFAP2B:0.516598024;HOX{A6,A7,B6,B7}:0.510153684848;BACH2:0.505803382643;MTE{core}:0.489639318052;TEAD1:0.486617102415;FOS_FOS{B,L1}_JUN{B,D}:0.481083416337;ALX4:0.475085148592;DBP:0.455176369815;ZNF148:0.446914231651;XBP1:0.441798537305;TBX4,5:0.436827157276;FOSL2:0.431453422843;SOX17:0.423971724953;EN1,2:0.412408521726;AR:0.396350065091;NANOG:0.393217377028;TFAP2{A,C}:0.385655177464;SMAD1..7,9:0.381730407784;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.359955348946;REST:0.356028532953;SPZ1:0.330599630563;MYBL2:0.326184120207;ONECUT1,2:0.309895574071;FOXQ1:0.304740280337;bHLH_family:0.293077737087;SOX{8,9,10}:0.292358432132;NR5A1,2:0.284909367275;LEF1_TCF7_TCF7L1,2:0.278571598029;MZF1:0.277855918534;GFI1:0.277758343466;ALX1:0.272892522843;PRRX1,2:0.268286004422;EGR1..3:0.264378072889;POU3F1..4:0.250207466015;HAND1,2:0.249304634986;POU1F1:0.2439651437;NFE2:0.224970147526;HSF1,2:0.219888563748;MTF1:0.208666554142;HLF:0.205483702399;PAX6:0.204691774667;NHLH1,2:0.19820444722;PAX5:0.165878451175;E2F1..5:0.161268235373;SOX2:0.154252331534;MED-1{core}:0.145085142658;TFDP1:0.128819743713;STAT5{A,B}:0.122418209941;VSX1,2:0.122242736948;ELK1,4_GABP{A,B1}:0.0994088842696;MAZ:0.0968749594776;ARID5B:0.093866740056;HOXA9_MEIS1:0.0917510956366;MYFfamily:0.0736594122008;JUN:0.055484562448;KLF4:0.0535465390285;LHX3,4:0.0530250201547;NR6A1:0.0465509812367;YY1:0.0384169195663;HNF1A:0.0376242415705;PAX8:0.0322581517213;GFI1B:0.0227942995407;RREB1:0.00527036784753;SP1:0.00433268394219;NFY{A,B,C}:0.00425211904223;POU5F1:0.00311772663494;ZFP161:0.000357185790636;UFEwm:-0.00143345692033;ZNF143:-0.0219901551569;RFX1:-0.0345034752963;EP300:-0.0568830179088;MYB:-0.103370716447;ZNF384:-0.104758967678;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.105610550374;RXR{A,B,G}:-0.112199024804;HOX{A4,D4}:-0.120349593374;CEBPA,B_DDIT3:-0.136446412785;NR3C1:-0.14750033482;NRF1:-0.148202310787;CREB1:-0.161171707086;ATF2:-0.187816928427;NKX6-1,2:-0.189172262291;EVI1:-0.190020609702;HBP1_HMGB_SSRP1_UBTF:-0.198504885573;NR1H4:-0.203979651351;RUNX1..3:-0.210735012333;FOXL1:-0.221687919524;NFIL3:-0.24570514449;STAT2,4,6:-0.247003732968;PAX3,7:-0.252827135872;GATA4:-0.271407341518;PAX2:-0.279175746008;CDC5L:-0.280969663229;NFKB1_REL_RELA:-0.288177490136;ADNP_IRX_SIX_ZHX:-0.292271476715;LMO2:-0.296769386603;HNF4A_NR2F1,2:-0.299551806113;PRDM1:-0.31088814729;ETS1,2:-0.313605527535;SOX5:-0.338420643786;MEF2{A,B,C,D}:-0.341181544005;HMGA1,2:-0.364218399549;GATA6:-0.368729022941;ATF5_CREB3:-0.378446601929;TOPORS:-0.387047637754;PDX1:-0.405435892893;ELF1,2,4:-0.418358681837;NKX2-3_NKX2-5:-0.443997300584;NKX3-2:-0.453770763314;FOXM1:-0.47524260625;SPIB:-0.491916787337;SPI1:-0.515484960637;DMAP1_NCOR{1,2}_SMARC:-0.521597541972;BREu{core}:-0.52814545792;TLX2:-0.5334480593;FOX{D1,D2}:-0.552500064427;TGIF1:-0.564768988164;NKX2-2,8:-0.62585483668;FOXN1:-0.654182288855;TEF:-0.697405974094;RORA:-0.722388363201;FOX{F1,F2,J1}:-0.723708916418;CUX2:-0.765404531645;SNAI1..3:-0.796516149535;T:-0.809210557681;IRF1,2:-0.810759839084;ESRRA:-0.864986750955;BPTF:-0.865995998587;IRF7:-0.90991309453;ATF4:-0.945866715655;SREBF1,2:-0.954312029268;FOXP3:-0.954427951079;OCT4_SOX2{dimer}:-0.961228042851;ZEB1:-0.993734535604;NKX2-1,4:-1.0043313653;STAT1,3:-1.01578054532;FOXA2:-1.04645223295;FOXO1,3,4:-1.0633400036;AIRE:-1.10133441986;RFX2..5_RFXANK_RFXAP:-1.20329362474;MYOD1:-1.23711814837;ZBTB16:-1.25225956272;PITX1..3:-1.32163801386;IKZF2:-1.48158612156;FOXP1:-1.50712457951;PAX4:-1.5515525447;FOXD3:-1.5558892206;RBPJ:-1.75417978175;CDX1,2,4:-1.81413989232
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11289-117A2;search_select_hide=table117:FF:11289-117A2
}}
}}

Latest revision as of 16:31, 3 June 2020

Name:Smooth Muscle Cells - Subclavian Artery, donor1
Species:Human (Homo sapiens)
Library ID:CNhs11090
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuesubclavian artery
dev stage27 years old adult
sexfemale
age27
cell typesmooth muscle cell
cell lineNA
companyCell Applications
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot number2105
catalog numberCA3010-R10a
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005800
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11090 CAGE DRX008501 DRR009373
Accession ID Hg19

Library idBAMCTSS
CNhs11090 DRZ000798 DRZ002183
Accession ID Hg38

Library idBAMCTSS
CNhs11090 DRZ012148 DRZ013533
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
sRNA-Seq  SAMD00005800
Library accession numbers

Library idMethodExp. accession idRun accession id
SRhi10004.GTCCGC sRNA-Seq DRX037048 DRR041414
Accession ID Hg19

Library idBAMCTSS
SRhi10004.GTCCGC DRZ007056


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.17
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.0414
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.0969
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.266
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.297
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140.191
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.323
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.994
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.957
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0.191
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.725
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.216
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.323
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0.323
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.781
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.506
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.424
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.191
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11090

Jaspar motifP-value
MA0002.20.605
MA0003.10.45
MA0004.10.435
MA0006.10.671
MA0007.10.187
MA0009.10.339
MA0014.10.433
MA0017.10.129
MA0018.20.12
MA0019.10.177
MA0024.10.468
MA0025.10.535
MA0027.10.611
MA0028.10.191
MA0029.10.641
MA0030.10.439
MA0031.10.538
MA0035.20.779
MA0038.10.367
MA0039.20.608
MA0040.10.579
MA0041.10.44
MA0042.10.626
MA0043.10.0706
MA0046.10.198
MA0047.20.387
MA0048.10.248
MA0050.11.29006e-5
MA0051.10.0028
MA0052.10.776
MA0055.10.305
MA0057.10.575
MA0058.10.388
MA0059.10.742
MA0060.10.209
MA0061.10.139
MA0062.20.0192
MA0065.20.0483
MA0066.10.966
MA0067.10.201
MA0068.10.731
MA0069.10.952
MA0070.10.163
MA0071.10.706
MA0072.10.515
MA0073.10.707
MA0074.10.332
MA0076.10.419
MA0077.10.219
MA0078.10.439
MA0079.20.169
MA0080.22.54584e-5
MA0081.10.22
MA0083.11.67388e-4
MA0084.10.218
MA0087.10.38
MA0088.10.969
MA0090.10.0284
MA0091.10.597
MA0092.10.555
MA0093.10.592
MA0099.25.5049e-10
MA0100.10.209
MA0101.10.0926
MA0102.20.794
MA0103.10.00105
MA0104.20.0807
MA0105.10.11
MA0106.10.805
MA0107.10.167
MA0108.24.36734e-8
MA0111.10.0379
MA0112.20.739
MA0113.10.444
MA0114.10.0405
MA0115.10.107
MA0116.10.282
MA0117.10.581
MA0119.10.672
MA0122.10.917
MA0124.10.835
MA0125.10.331
MA0131.10.607
MA0135.10.609
MA0136.10.00276
MA0137.20.541
MA0138.20.263
MA0139.10.516
MA0140.10.605
MA0141.10.623
MA0142.10.574
MA0143.10.235
MA0144.10.492
MA0145.10.474
MA0146.10.14
MA0147.10.375
MA0148.10.57
MA0149.10.583
MA0150.10.224
MA0152.10.678
MA0153.10.207
MA0154.10.47
MA0155.10.0558
MA0156.10.03
MA0157.10.26
MA0159.10.547
MA0160.10.67
MA0162.10.239
MA0163.10.367
MA0164.10.351
MA0258.10.947
MA0259.10.562



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11090

Novel motifP-value
10.158
100.0834
1000.335
1010.0533
1020.767
1030.86
1040.263
1050.973
1060.961
1070.652
1080.866
1090.8
110.874
1100.924
1110.028
1120.399
1130.0569
1140.976
1150.485
1160.115
1170.334
1180.368
1190.433
120.727
1200.968
1210.357
1220.925
1230.00132
1240.682
1250.608
1260.433
1270.621
1280.674
1290.832
130.0786
1300.0236
1310.36
1320.913
1330.344
1340.696
1350.844
1360.817
1370.483
1380.321
1390.827
140.312
1400.0863
1410.00673
1420.974
1430.126
1440.964
1450.367
1460.113
1470.23
1480.116
1490.635
150.279
1500.442
1510.835
1520.0204
1530.489
1540.481
1550.59
1560.75
1570.88
1580.023
1590.346
160.533
1600.821
1610.954
1620.352
1630.839
1640.638
1650.312
1660.813
1670.305
1680.399
1690.2
170.63
180.515
190.605
20.436
200.249
210.532
220.369
230.424
240.542
250.179
260.246
270.788
280.0595
290.257
30.544
300.217
310.919
326.66898e-6
330.817
340.358
350.454
360.0563
370.977
380.708
390.225
40.903
400.983
410.418
420.926
430.649
440.337
450.618
460.618
470.519
480.85
490.0622
50.657
500.592
510.7
520.525
530.0577
540.614
550.686
560.699
570.641
580.193
590.596
60.883
600.17
610.289
620.237
630.963
640.717
650.717
660.39
670.808
680.00748
690.321
70.269
700.422
710.85
720.658
730.0207
740.843
750.709
760.236
770.379
780.202
790.309
80.803
800.734
810.546
820.301
830.586
840.463
850.984
860.63
870.0831
880.111
890.544
90.378
900.213
910.888
920.175
930.661
940.523
950.492
960.596
970.365
980.612
990.0122



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11090


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002371 (somatic cell)
0000393 (electrically responsive cell)
0000183 (contractile cell)
0000187 (muscle cell)
0000192 (smooth muscle cell)
0000211 (electrically active cell)
0000255 (eukaryotic cell)
0000359 (vascular associated smooth muscle cell)
0002595 (smooth muscle cell of the subclavian artery)

UBERON: Anatomy
0000468 (multi-cellular organism)
0001637 (artery)
0002100 (trunk)
0000483 (epithelium)
0000479 (tissue)
0000055 (vessel)
0004111 (anatomical conduit)
0000475 (organism subdivision)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0003914 (epithelial tube)
0000025 (tube)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0009569 (subdivision of trunk)
0004573 (systemic artery)
0003834 (thoracic segment blood vessel)
0003509 (arterial blood vessel)
0007500 (epithelial tube open at both ends)
0001981 (blood vessel)
0002049 (vasculature)
0003513 (trunk blood vessel)
0010317 (germ layer / neural crest derived structure)
0007798 (vascular system)
0001533 (subclavian artery)
0004535 (cardiovascular system)
0004571 (systemic arterial system)
0000915 (thoracic segment of trunk)
0004572 (arterial system)
0004537 (blood vasculature)
0001009 (circulatory system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000167 (smooth muscle cell sample)
0000175 (human smooth muscle cell of subclavian artery sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000355 (multi-potent skeletal muscle stem cell)
CL:0000222 (mesodermal cell)
CL:0000514 (smooth muscle myoblast)

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