FFCP PHASE1:Hg19::chr3:146874115..146874120,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=NA|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript|HGNC=NA|TSSclassifier=N|UniProt=NA|association_with_transcript=NA|coexpression_cluster_id=C1079|description=CAGE_peak_at_chr3:146874115..146874120,-|id=chr3:146874115..146874120,-|ontology_enrichment_celltype=CL:0000708!3.33e-07!3;CL:0000128!3.78e-07!7;CL:0000126!3.78e-07!7;CL:0000127!3.78e-07!7;CL:0002453!3.78e-07!7;CL:0002603!3.91e-07!3|ontology_enrichment_celltype_v019=CL:0000708;4.72e-14;3!CL:0000228;3.63e-11;1!CL:0002372;3.63e-11;1|ontology_enrichment_celltype_v019_2=CL:0000708,5.05e-14,3;CL:0000228,4.01e-11,1;CL:0002372,4.01e-11,1|ontology_enrichment_development_v019=UBERON:0006215;8.15e-31;3!UBERON:0010115;1.52e-11;1|ontology_enrichment_disease=|ontology_enrichment_disease_v019=DOID:5409;2.82e-11;4!DOID:1325;8.36e-07;7!DOID:3904;8.36e-07;7|ontology_enrichment_disease_v019_2=DOID:5409,2.82e-11,4;DOID:1325,8.37e-07,7;DOID:3904,8.37e-07,7|ontology_enrichment_uberon=UBERON:0002616!5.85e-52!59;UBERON:0001049!3.43e-51!57;UBERON:0005068!3.43e-51!57;UBERON:0006241!3.43e-51!57;UBERON:0007135!3.43e-51!57;UBERON:0000955!2.65e-46!69;UBERON:0006238!2.65e-46!69;UBERON:0001017!1.91e-45!82;UBERON:0005743!1.82e-44!86;UBERON:0000073!2.42e-44!94;UBERON:0001016!2.42e-44!94;UBERON:0003075!8.60e-41!86;UBERON:0007284!8.60e-41!86;UBERON:0002346!2.93e-40!90;UBERON:0002780!5.96e-30!41;UBERON:0001890!5.96e-30!41;UBERON:0006240!5.96e-30!41;UBERON:0003080!4.78e-29!42;UBERON:0001893!1.64e-26!34;UBERON:0002020!3.44e-26!34;UBERON:0003528!3.44e-26!34;UBERON:0002791!5.79e-25!33;UBERON:0003076!6.69e-25!15;UBERON:0003057!6.69e-25!15;UBERON:0000033!1.14e-23!123;UBERON:0004733!1.30e-23!12;UBERON:0002028!1.30e-23!12;UBERON:0007277!1.30e-23!12;UBERON:0001869!1.59e-23!32;UBERON:0000924!2.27e-22!173;UBERON:0006601!2.27e-22!173;UBERON:0004121!3.60e-22!169;UBERON:0000153!6.19e-22!129;UBERON:0007811!6.19e-22!129;UBERON:0004732!1.58e-21!13;UBERON:0003056!3.19e-20!61;UBERON:0007023!4.11e-19!115;UBERON:0000956!2.13e-18!25;UBERON:0000203!2.13e-18!25;UBERON:0002680!5.88e-18!9;UBERON:0001895!5.88e-18!9;UBERON:0010092!5.88e-18!9;UBERON:0002619!1.48e-16!22;UBERON:0001950!3.76e-16!20;UBERON:0002037!4.26e-13!6;UBERON:0006215!4.26e-13!6;UBERON:0000025!7.51e-12!194;UBERON:0002298!8.16e-12!8;UBERON:0000119!8.06e-11!312;UBERON:0002308!2.56e-09!9;UBERON:0000125!2.56e-09!9;UBERON:0000483!3.25e-09!309;UBERON:0000477!7.33e-08!286;UBERON:0000369!1.06e-07!4;UBERON:0002435!1.06e-07!4;UBERON:0000204!1.06e-07!4;UBERON:0010082!1.06e-07!4;UBERON:0004111!1.21e-07!241;UBERON:0001871!1.97e-07!7;UBERON:0001896!2.55e-07!3;UBERON:0005290!2.55e-07!3;UBERON:0010096!2.55e-07!3;UBERON:0003210!3.33e-07!3;UBERON:0002420!9.48e-07!9;UBERON:0007245!9.48e-07!9;UBERON:0010009!9.48e-07!9;UBERON:0010011!9.48e-07!9;UBERON:0000454!9.48e-07!9|ontology_enrichment_uberon_v019=UBERON:0004733;1.65e-29;12!UBERON:0002028;1.65e-29;12!UBERON:0004732;3.21e-27;13!UBERON:0002037;4.13e-27;6!UBERON:0002680;3.50e-18;9!UBERON:0001895;3.50e-18;9!UBERON:0001896;4.72e-14;3!UBERON:0003210;4.72e-14;3!UBERON:0005290;4.72e-14;3!UBERON:0002363;1.52e-11;1!UBERON:0005284;8.50e-09;5!UBERON:0002298;1.80e-07;6!UBERON:0001017;3.00e-07;75|ontology_enrichment_uberon_v019_2=UBERON:0003076,5.82e-32,15;UBERON:0003057,5.82e-32,15;UBERON:0004733,1.46e-29,12;UBERON:0002028,1.46e-29,12;UBERON:0007277,1.46e-29,12;UBERON:0004732,2.87e-27,13;UBERON:0002037,4.28e-27,6;UBERON:0006215,4.28e-27,6;UBERON:0002680,3.59e-18,9;UBERON:0001895,3.59e-18,9;UBERON:0010092,3.59e-18,9;UBERON:0001896,3.87e-14,3;UBERON:0005290,3.87e-14,3;UBERON:0010096,3.87e-14,3;UBERON:0003210,5.05e-14,3;UBERON:0001017,7.35e-13,81;UBERON:0002363,1.60e-11,1;UBERON:0007645,1.60e-11,1;UBERON:0007647,1.60e-11,1;UBERON:0010115,1.60e-11,1;UBERON:0001016,1.92e-11,89;UBERON:0000955,2.81e-10,68;UBERON:0006238,2.81e-10,68;UBERON:0001049,2.99e-10,56;UBERON:0005068,2.99e-10,56;UBERON:0006241,2.99e-10,56;UBERON:0007135,2.99e-10,56;UBERON:0005284,8.84e-09,5;UBERON:0000073,2.36e-08,53;UBERON:0002616,2.36e-08,53;UBERON:0002298,1.63e-07,6;UBERON:0003075,9.77e-07,82;UBERON:0007284,9.77e-07,82|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0.247532705920093,0,0,0,0,0,2.46242116153576,0.408001382488506,0.940364164434263,0.85870796139317,0.136874425072884,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.400395987036012,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0945348171640679,0,0,0.392937226493138,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.05950199351452,0,0,0,0,0,0,0,0.140450806702248,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0895585227028483,0,0,0,0,0.414656231081544,0.144119953416961,0,0,0,0,0,0,0,0,1.79409734952577,1.30788020649984,0.4400297149257,0,0,0,0,0,0,0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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=N | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C1079 | |||
|description=CAGE_peak_at_chr3:146874115..146874120,- | |||
|id=chr3:146874115..146874120,- | |||
|ontology_enrichment_celltype=CL:0000708!3.33e-07!3;CL:0000128!3.78e-07!7;CL:0000126!3.78e-07!7;CL:0000127!3.78e-07!7;CL:0002453!3.78e-07!7;CL:0002603!3.91e-07!3 | |||
|ontology_enrichment_celltype_v019=CL:0000708;4.72e-14;3!CL:0000228;3.63e-11;1!CL:0002372;3.63e-11;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0000708,5.05e-14,3;CL:0000228,4.01e-11,1;CL:0002372,4.01e-11,1 | |||
|ontology_enrichment_development_v019=UBERON:0006215;8.15e-31;3!UBERON:0010115;1.52e-11;1 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:5409;2.82e-11;4!DOID:1325;8.36e-07;7!DOID:3904;8.36e-07;7 | |||
|ontology_enrichment_disease_v019_2=DOID:5409,2.82e-11,4;DOID:1325,8.37e-07,7;DOID:3904,8.37e-07,7 | |||
|ontology_enrichment_uberon=UBERON:0002616!5.85e-52!59;UBERON:0001049!3.43e-51!57;UBERON:0005068!3.43e-51!57;UBERON:0006241!3.43e-51!57;UBERON:0007135!3.43e-51!57;UBERON:0000955!2.65e-46!69;UBERON:0006238!2.65e-46!69;UBERON:0001017!1.91e-45!82;UBERON:0005743!1.82e-44!86;UBERON:0000073!2.42e-44!94;UBERON:0001016!2.42e-44!94;UBERON:0003075!8.60e-41!86;UBERON:0007284!8.60e-41!86;UBERON:0002346!2.93e-40!90;UBERON:0002780!5.96e-30!41;UBERON:0001890!5.96e-30!41;UBERON:0006240!5.96e-30!41;UBERON:0003080!4.78e-29!42;UBERON:0001893!1.64e-26!34;UBERON:0002020!3.44e-26!34;UBERON:0003528!3.44e-26!34;UBERON:0002791!5.79e-25!33;UBERON:0003076!6.69e-25!15;UBERON:0003057!6.69e-25!15;UBERON:0000033!1.14e-23!123;UBERON:0004733!1.30e-23!12;UBERON:0002028!1.30e-23!12;UBERON:0007277!1.30e-23!12;UBERON:0001869!1.59e-23!32;UBERON:0000924!2.27e-22!173;UBERON:0006601!2.27e-22!173;UBERON:0004121!3.60e-22!169;UBERON:0000153!6.19e-22!129;UBERON:0007811!6.19e-22!129;UBERON:0004732!1.58e-21!13;UBERON:0003056!3.19e-20!61;UBERON:0007023!4.11e-19!115;UBERON:0000956!2.13e-18!25;UBERON:0000203!2.13e-18!25;UBERON:0002680!5.88e-18!9;UBERON:0001895!5.88e-18!9;UBERON:0010092!5.88e-18!9;UBERON:0002619!1.48e-16!22;UBERON:0001950!3.76e-16!20;UBERON:0002037!4.26e-13!6;UBERON:0006215!4.26e-13!6;UBERON:0000025!7.51e-12!194;UBERON:0002298!8.16e-12!8;UBERON:0000119!8.06e-11!312;UBERON:0002308!2.56e-09!9;UBERON:0000125!2.56e-09!9;UBERON:0000483!3.25e-09!309;UBERON:0000477!7.33e-08!286;UBERON:0000369!1.06e-07!4;UBERON:0002435!1.06e-07!4;UBERON:0000204!1.06e-07!4;UBERON:0010082!1.06e-07!4;UBERON:0004111!1.21e-07!241;UBERON:0001871!1.97e-07!7;UBERON:0001896!2.55e-07!3;UBERON:0005290!2.55e-07!3;UBERON:0010096!2.55e-07!3;UBERON:0003210!3.33e-07!3;UBERON:0002420!9.48e-07!9;UBERON:0007245!9.48e-07!9;UBERON:0010009!9.48e-07!9;UBERON:0010011!9.48e-07!9;UBERON:0000454!9.48e-07!9 | |||
|ontology_enrichment_uberon_v019=UBERON:0004733;1.65e-29;12!UBERON:0002028;1.65e-29;12!UBERON:0004732;3.21e-27;13!UBERON:0002037;4.13e-27;6!UBERON:0002680;3.50e-18;9!UBERON:0001895;3.50e-18;9!UBERON:0001896;4.72e-14;3!UBERON:0003210;4.72e-14;3!UBERON:0005290;4.72e-14;3!UBERON:0002363;1.52e-11;1!UBERON:0005284;8.50e-09;5!UBERON:0002298;1.80e-07;6!UBERON:0001017;3.00e-07;75 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003076,5.82e-32,15;UBERON:0003057,5.82e-32,15;UBERON:0004733,1.46e-29,12;UBERON:0002028,1.46e-29,12;UBERON:0007277,1.46e-29,12;UBERON:0004732,2.87e-27,13;UBERON:0002037,4.28e-27,6;UBERON:0006215,4.28e-27,6;UBERON:0002680,3.59e-18,9;UBERON:0001895,3.59e-18,9;UBERON:0010092,3.59e-18,9;UBERON:0001896,3.87e-14,3;UBERON:0005290,3.87e-14,3;UBERON:0010096,3.87e-14,3;UBERON:0003210,5.05e-14,3;UBERON:0001017,7.35e-13,81;UBERON:0002363,1.60e-11,1;UBERON:0007645,1.60e-11,1;UBERON:0007647,1.60e-11,1;UBERON:0010115,1.60e-11,1;UBERON:0001016,1.92e-11,89;UBERON:0000955,2.81e-10,68;UBERON:0006238,2.81e-10,68;UBERON:0001049,2.99e-10,56;UBERON:0005068,2.99e-10,56;UBERON:0006241,2.99e-10,56;UBERON:0007135,2.99e-10,56;UBERON:0005284,8.84e-09,5;UBERON:0000073,2.36e-08,53;UBERON:0002616,2.36e-08,53;UBERON:0002298,1.63e-07,6;UBERON:0003075,9.77e-07,82;UBERON:0007284,9.77e-07,82 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0.247532705920093,0,0,0,0,0,2.46242116153576,0.408001382488506,0.940364164434263,0.85870796139317,0.136874425072884,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.400395987036012,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0945348171640679,0,0,0.392937226493138,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.05950199351452,0,0,0,0,0,0,0,0.140450806702248,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0895585227028483,0,0,0,0,0.414656231081544,0.144119953416961,0,0,0,0,0,0,0,0,1.79409734952577,1.30788020649984,0.4400297149257,0,0,0,0,0,0,0,0,0.142977993658148,0,0,0,0,0,0,0,0,0,0,0,0,0,1.42636905040718,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.195801157462741,0.343143423810856,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0821271560138091,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.082509499920588,0,0,0,0,0.154048617114644,0,0,0,0,0.170453254832202,0,0,0,0.255225424989168,0,0,0.31481234683064,0,0,0,0,0,0,1.86079184679834,0.316379424718726,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.980160863924127,0,0,0.284567373393656,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.4098700508785,0,0,5.94666556572616,0.334330152832435,0,0,0,0,0,0.140669416410513,0,0,0,0,0,0,0,0,0,0.0898683511473268,0,0,0,0,0,0.969332746095218,0.185536196323703,0,0,0,0,0,0,0,0,0,0,0.885741385813839,0.120596438625408,1.52581736317083,5.52896299656123,3.84211904639612,0.658156191461918,0,0,0,0,0,0,0.760531603454056,0,0.0915975934018623,0,0,0,0,0,0.784250137270958,0.335643173951685,0.189753732724185,0,0,0,0,0,0,0,0,0.296521128680622,0.123563938946503,0,0.943615861729479,0,0,0,0,0,0,0,0.30607276163049,3.47526187956684,0.150323419414493,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.225980740780532,0,0,0.633107959558787,0,0.320635281006135,0,0,0.144090417154106,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.458320848023367,0,0,0,0,0,0,0,0,0,0,0,0,0,0.272406812223151,0,0,0,0,0,0.303747783290123,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.113312091520126,0,0,0.258565912723101,0.39669780522807,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.122026264901963,0.250381861413,1.72022758707021,1.77486482458964,0.683060432355218,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.343395705182793,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.414775308455192,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.314531883711793,0,0,0,0.371807292777007,0,0,0,0,0,0,0.385375350578757,0,0.319267718114302,0.41023272848151,0.252071696221718,0.138314504928436,0.322951291263702,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.607838261565552,0,0.620060389503552,0.19024743058172,0.546974809018219,0,0,0,0,0.535701835878287,1.3451348888753,0,0,0,0.115233987555779,0,0.747667062745149,0,0,0.222462803784138,0,0.157115589916002,0,0,0,0,0.0714765441766563,0,0,0,0,0,0,0,0,0.118332000730565,0.255640214277473,0,0,0,0,0,0,0,0,0,0,0,0,0.198950775161368,9.15684698987278,0.11294608203896,0,4.07599677630019,0,0,0,0,0,0.196308467114945,0,2.9585900930838,0,0,0,0,0,0,0,0,0,0.286679166302903,14.3572121595798,0.135982980381829,0.436350690340377,0,0,0,0,0,0,0,0.101988829741982,0,0,0.50141507858475,0.227336094654718,0.803892390468535,0.829169439458779,0.413731983447581,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.9307228228694,0,0,0,0,0,0,0 | |||
|short_description=p@chr3:146874115..146874120,- | |||
}} |
Revision as of 21:57, 12 September 2013
Short description: | p@chr3:146874115..146874120, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr3:146874115..146874120, - |
Coexpression cluster: | C1079_synovial_cerebellum_small_Smooth_medulla_spinal_dura |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
leptomeningeal cell | 5.05e-14 | 3 |
multinucleate cell | 4.01e-11 | 1 |
myotube | 4.01e-11 | 1 |
Ontology term | p-value | n |
---|---|---|
posterior neural tube | 5.82e-32 | 15 |
chordal neural plate | 5.82e-32 | 15 |
segmental subdivision of hindbrain | 1.46e-29 | 12 |
hindbrain | 1.46e-29 | 12 |
presumptive hindbrain | 1.46e-29 | 12 |
segmental subdivision of nervous system | 2.87e-27 | 13 |
cerebellum | 4.28e-27 | 6 |
rhombic lip | 4.28e-27 | 6 |
regional part of metencephalon | 3.59e-18 | 9 |
metencephalon | 3.59e-18 | 9 |
future metencephalon | 3.59e-18 | 9 |
medulla oblongata | 3.87e-14 | 3 |
myelencephalon | 3.87e-14 | 3 |
future myelencephalon | 3.87e-14 | 3 |
blood-cerebrospinal fluid barrier | 5.05e-14 | 3 |
central nervous system | 7.35e-13 | 81 |
dura mater | 1.60e-11 | 1 |
future meninx | 1.60e-11 | 1 |
ectomeninx | 1.60e-11 | 1 |
future dura mater | 1.60e-11 | 1 |
nervous system | 1.92e-11 | 89 |
brain | 2.81e-10 | 68 |
future brain | 2.81e-10 | 68 |
neural tube | 2.99e-10 | 56 |
neural rod | 2.99e-10 | 56 |
future spinal cord | 2.99e-10 | 56 |
neural keel | 2.99e-10 | 56 |
brain vasculature | 8.84e-09 | 5 |
regional part of nervous system | 2.36e-08 | 53 |
regional part of brain | 2.36e-08 | 53 |
brainstem | 1.63e-07 | 6 |
neural plate | 9.77e-07 | 82 |
presumptive neural plate | 9.77e-07 | 82 |
Ontology term | p-value | n |
---|---|---|
lung small cell carcinoma | 2.82e-11 | 4 |
bronchus cancer | 8.37e-07 | 7 |
bronchogenic carcinoma | 8.37e-07 | 7 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.