FFCP PHASE1:Mm9::chrX:71069888..71069937,-: Difference between revisions
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{{FFCP|EntrezGene=245469|HGNC=|MCL_coexpression_id=13|UniProt=Q9QY39,A2AFG3|association_with_transcript=370bp_to_ENSMUST00000002080,ENSMUST00000114438,NM_001029868,uc009tmt.1,uc009tmu.1_5end|description=CAGE_peak_5_at_Pdzd4_5end|id=chrX:71069888..71069937,-|ontology_enrichment_celltype=CL:0000117!8.62e-15!23;CL:0000337!8.62e-15!23;CL:0000540!1.06e-08!33;CL:0000047!1.06e-08!33;CL:0000031!1.06e-08!33;CL:0000404!1.06e-08!33;CL:0002609!7.66e-07!6|ontology_enrichment_celltype_v019_2=CL:0000117,2.58e-36,23;CL:0000337,2.58e-36,23;CL:0000540,3.04e-24,33;CL:0000047,3.04e-24,33;CL:0000031,3.04e-24,33;CL:0000404,3.04e-24,33;CL:0000393,5.71e-20,39;CL:0000211,5.71e-20,39;CL:0002609,5.80e-19,6;CL:0002319,8.79e-18,43;CL:0000221,2.68e-17,44;CL:0000133,2.68e-17,44;CL:0002613,4.94e-11,3;CL:0002608,4.42e-10,3;CL:0002321,1.46e-09,70;CL:0002611,6.09e-07,2|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002020!1.00e-21!34;UBERON:0001049!9.33e-20!52;UBERON:0005068!9.33e-20!52;UBERON:0006241!9.33e-20!52;UBERON:0007135!9.33e-20!52;UBERON:0003056!1.71e-19!49;UBERON:0001017!1.41e-18!73;UBERON:0005743!1.41e-18!73;UBERON:0000073!2.96e-18!75;UBERON:0001016!2.96e-18!75;UBERON:0000955!3.94e-18!50;UBERON:0006238!3.94e-18!50;UBERON:0003080!8.61e-18!40;UBERON:0000033!1.06e-17!63;UBERON:0002791!1.13e-17!29;UBERON:0003528!1.13e-17!29;UBERON:0001893!1.13e-17!29;UBERON:0002346!1.32e-17!71;UBERON:0003075!1.32e-17!71;UBERON:0007284!1.32e-17!71;UBERON:0004121!1.84e-17!102;UBERON:0000924!1.84e-17!102;UBERON:0006601!1.84e-17!102;UBERON:0002616!2.09e-17!49;UBERON:0002780!3.96e-17!39;UBERON:0001890!3.96e-17!39;UBERON:0006240!3.96e-17!39;UBERON:0000956!2.28e-14!21;UBERON:0001869!2.28e-14!21;UBERON:0000203!2.28e-14!21;UBERON:0002619!4.57e-11!17;UBERON:0007811!2.69e-10!86;UBERON:0000153!7.58e-10!94;UBERON:0002021!1.83e-09!10;UBERON:0000411!1.83e-09!10;UBERON:0001950!1.83e-09!10|ontology_enrichment_uberon_v019_2=UBERON:0002020,1.49e-44,34;UBERON:0003528,6.10e-36,29;UBERON:0002791,6.10e-36,29;UBERON:0001893,6.10e-36,29;UBERON:0000073,6.79e-29,54;UBERON:0001049,1.37e-27,52;UBERON:0005068,1.37e-27,52;UBERON:0006241,1.37e-27,52;UBERON:0007135,1.37e-27,52;UBERON:0000956,1.73e-26,21;UBERON:0001869,1.73e-26,21;UBERON:0000203,1.73e-26,21;UBERON:0002780,1.01e-25,39;UBERON:0001890,1.01e-25,39;UBERON:0006240,1.01e-25,39;UBERON:0003080,5.56e-25,40;UBERON:0001017,1.59e-24,73;UBERON:0001016,9.60e-24,75;UBERON:0002346,1.43e-21,64;UBERON:0003075,1.43e-21,64;UBERON:0007284,1.43e-21,64;UBERON:0002616,3.29e-21,46;UBERON:0000955,1.13e-20,47;UBERON:0006238,1.13e-20,47;UBERON:0002619,5.46e-20,17;UBERON:0003056,1.14e-19,49;UBERON:0010371,2.37e-18,73;UBERON:0004121,1.01e-17,95;UBERON:0000924,1.01e-17,95;UBERON:0006601,1.01e-17,95;UBERON:0002021,1.86e-14,10;UBERON:0000411,1.86e-14,10;UBERON:0001950,1.86e-14,10;UBERON:0010314,1.29e-13,92;UBERON:0000369,2.03e-11,5;UBERON:0002435,2.03e-11,5;UBERON:0000204,2.03e-11,5;UBERON:0010082,2.03e-11,5;UBERON:0002420,2.78e-10,8;UBERON:0007245,2.78e-10,8;UBERON:0010009,2.78e-10,8;UBERON:0010011,2.78e-10,8;UBERON:0000454,2.78e-10,8;UBERON:0000025,4.27e-10,114;UBERON:0001948,1.56e-09,5;UBERON:0002315,1.56e-09,5;UBERON:0004111,3.95e-09,122;UBERON:0002240,5.82e-08,6;UBERON:0005174,5.82e-08,6;UBERON:0001137,5.82e-08,6;UBERON:0001954,3.79e-07,7;UBERON:0003022,3.79e-07,7;UBERON:0002421,3.79e-07,7;UBERON:0000349,3.79e-07,7;UBERON:0002600,3.79e-07,7;UBERON:0002256,6.09e-07,2|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0.0797721589953364,0,0,0,0,0,0,0.274228867211478,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.82084814773638,4.23192783417626,0.633831403506179,0.338844532069132,0,0,0,0,0.299600110518405,0.384218305321555,1.55534418462716,2.02508907497536,2.73422449756797,1.42825492201902,1.54607978666129,1.71487118900936,1.53352753629178,1.83843757322004,0,1.14918604276669,0.768032666281217,3.42904348098504,3.7509933876988,2.08365348222704,0,0,1.06958773443767,1.17851434189467,0.711858403995515,1.1183966749518,0.075726193333184,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.173485326766136,0,0,0.150722640552623,0,0,0,0,0,0,0,0,0,0,0.209446706813455,0,0,0,0,0.599162557619291,0.915001205637253,4.64921102817598,0.521472960576829,1.79000820131231,0.62336413367868,0.648965052271031,0.203678727700633,0.248813941220186,0,0.210441855886474,0.260240885925407,0,0,0.452114453507145,0.340182495756639,0.384341160854549,0.374806898238915,0.258703370739016,0,0.378212160335639,0,0,0.278047249225598,0,0.205782136407943,0.199034266818493,0,0,0,0,0.234526059981096,0,0,0,0,0,0,0,0,0,0,0,0,0,1.05144974282064,0.514523061896422,0,0,0.426576501070468,0,0,0,0,0,0,0,0,0.198956472041151,0,0,0,0,0,0,0,0,0,0.0701358198903186,0,0,0,0,0,0,0,0.224862112384854,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.234690248288502,0,0,0.195133647857799,0.157635144106191,0,0,0,0,0,0,0,0,0,0.160550589987792,0.35163505977661,0.491804836130026,0,0,0,0,0,0,0,0,0.292255857911312,0,0.963963949265421,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.517434735131018,0.214337035031592,0,0.178368817602071,0,0.304464949114599,0,0,0,0.16488625294148,0,0.241251699712623,0.238744688006273,0.492422699235184,0,0,0,0.206386867963223,0.185194527369712,0,0.136694227721025,0,0.169978429993855,0.139951452323658,0,0,0.158167996790568,0,0.108005340821801,0,0,0,0.0826534557253359,0,0,0,0.56369293868419,0.598066184175915,1.65458490457098,0.777804753376191,0.645799117388655,0.168956125490778,0,0,0.314578033277133,0,0,0,0,0,0,0,0,0,0,0.302899349844443,0,0.100826185136841,0,0,0,0,0,0.0897138566094757,0,0,0,0,0,0,0.564751842617067,0.920650473014354,1.71868654031819,0.859265911718438,2.05524755931193,1.5107877947794,2.02506750069542,1.35096360967266,1.35942722695261,1.55328093525546,0.518936737920883,0.399024873401031,1.19513524027894,0,0.209613162627982,0.183843508450014,0.44449345560323,0.824140228955577,0,0,0.25347929989024,0.565879024158229,0.0936415074698824,0.192075457214608,0.34461281373368,0,0.115884325944855,0.192909220463705,0.412085900803307,0,0.342869252385415,0,0,0.145346416632329,0.282328141245992,0.423073039458382,0.365855945745545,0,0.407412341537585,0,0,0.197008964751127,0,0.464810523557898,0.192906610981141,0.499621155875892,0.467863216890817,0.429742108096597,0,0.441182838239031,0|short_description=p5@Pdzd4}} | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:245469 | |||
|HGNC= | |||
|MCL_coexpression_id=13 | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:Q9QY39,uniprot:A2AFG3 | |||
|association_with_transcript=370bp_to_ENSMUST00000002080,ENSMUST00000114438,NM_001029868,uc009tmt.1,uc009tmu.1_5end | |||
|cluster_id=chrX:71069888..71069937,- | |||
|description=CAGE_peak_5_at_Pdzd4_5end | |||
|id=chrX:71069888..71069937,- | |||
|ontology_enrichment_celltype=CL:0000117!8.62e-15!23;CL:0000337!8.62e-15!23;CL:0000540!1.06e-08!33;CL:0000047!1.06e-08!33;CL:0000031!1.06e-08!33;CL:0000404!1.06e-08!33;CL:0002609!7.66e-07!6 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,2.58e-36,23;CL:0000337,2.58e-36,23;CL:0000540,3.04e-24,33;CL:0000047,3.04e-24,33;CL:0000031,3.04e-24,33;CL:0000404,3.04e-24,33;CL:0000393,5.71e-20,39;CL:0000211,5.71e-20,39;CL:0002609,5.80e-19,6;CL:0002319,8.79e-18,43;CL:0000221,2.68e-17,44;CL:0000133,2.68e-17,44;CL:0002613,4.94e-11,3;CL:0002608,4.42e-10,3;CL:0002321,1.46e-09,70;CL:0002611,6.09e-07,2 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002020!1.00e-21!34;UBERON:0001049!9.33e-20!52;UBERON:0005068!9.33e-20!52;UBERON:0006241!9.33e-20!52;UBERON:0007135!9.33e-20!52;UBERON:0003056!1.71e-19!49;UBERON:0001017!1.41e-18!73;UBERON:0005743!1.41e-18!73;UBERON:0000073!2.96e-18!75;UBERON:0001016!2.96e-18!75;UBERON:0000955!3.94e-18!50;UBERON:0006238!3.94e-18!50;UBERON:0003080!8.61e-18!40;UBERON:0000033!1.06e-17!63;UBERON:0002791!1.13e-17!29;UBERON:0003528!1.13e-17!29;UBERON:0001893!1.13e-17!29;UBERON:0002346!1.32e-17!71;UBERON:0003075!1.32e-17!71;UBERON:0007284!1.32e-17!71;UBERON:0004121!1.84e-17!102;UBERON:0000924!1.84e-17!102;UBERON:0006601!1.84e-17!102;UBERON:0002616!2.09e-17!49;UBERON:0002780!3.96e-17!39;UBERON:0001890!3.96e-17!39;UBERON:0006240!3.96e-17!39;UBERON:0000956!2.28e-14!21;UBERON:0001869!2.28e-14!21;UBERON:0000203!2.28e-14!21;UBERON:0002619!4.57e-11!17;UBERON:0007811!2.69e-10!86;UBERON:0000153!7.58e-10!94;UBERON:0002021!1.83e-09!10;UBERON:0000411!1.83e-09!10;UBERON:0001950!1.83e-09!10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002020,1.49e-44,34;UBERON:0003528,6.10e-36,29;UBERON:0002791,6.10e-36,29;UBERON:0001893,6.10e-36,29;UBERON:0000073,6.79e-29,54;UBERON:0001049,1.37e-27,52;UBERON:0005068,1.37e-27,52;UBERON:0006241,1.37e-27,52;UBERON:0007135,1.37e-27,52;UBERON:0000956,1.73e-26,21;UBERON:0001869,1.73e-26,21;UBERON:0000203,1.73e-26,21;UBERON:0002780,1.01e-25,39;UBERON:0001890,1.01e-25,39;UBERON:0006240,1.01e-25,39;UBERON:0003080,5.56e-25,40;UBERON:0001017,1.59e-24,73;UBERON:0001016,9.60e-24,75;UBERON:0002346,1.43e-21,64;UBERON:0003075,1.43e-21,64;UBERON:0007284,1.43e-21,64;UBERON:0002616,3.29e-21,46;UBERON:0000955,1.13e-20,47;UBERON:0006238,1.13e-20,47;UBERON:0002619,5.46e-20,17;UBERON:0003056,1.14e-19,49;UBERON:0010371,2.37e-18,73;UBERON:0004121,1.01e-17,95;UBERON:0000924,1.01e-17,95;UBERON:0006601,1.01e-17,95;UBERON:0002021,1.86e-14,10;UBERON:0000411,1.86e-14,10;UBERON:0001950,1.86e-14,10;UBERON:0010314,1.29e-13,92;UBERON:0000369,2.03e-11,5;UBERON:0002435,2.03e-11,5;UBERON:0000204,2.03e-11,5;UBERON:0010082,2.03e-11,5;UBERON:0002420,2.78e-10,8;UBERON:0007245,2.78e-10,8;UBERON:0010009,2.78e-10,8;UBERON:0010011,2.78e-10,8;UBERON:0000454,2.78e-10,8;UBERON:0000025,4.27e-10,114;UBERON:0001948,1.56e-09,5;UBERON:0002315,1.56e-09,5;UBERON:0004111,3.95e-09,122;UBERON:0002240,5.82e-08,6;UBERON:0005174,5.82e-08,6;UBERON:0001137,5.82e-08,6;UBERON:0001954,3.79e-07,7;UBERON:0003022,3.79e-07,7;UBERON:0002421,3.79e-07,7;UBERON:0000349,3.79e-07,7;UBERON:0002600,3.79e-07,7;UBERON:0002256,6.09e-07,2 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0.0797721589953364,0,0,0,0,0,0,0.274228867211478,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.82084814773638,4.23192783417626,0.633831403506179,0.338844532069132,0,0,0,0,0.299600110518405,0.384218305321555,1.55534418462716,2.02508907497536,2.73422449756797,1.42825492201902,1.54607978666129,1.71487118900936,1.53352753629178,1.83843757322004,0,1.14918604276669,0.768032666281217,3.42904348098504,3.7509933876988,2.08365348222704,0,0,1.06958773443767,1.17851434189467,0.711858403995515,1.1183966749518,0.075726193333184,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.173485326766136,0,0,0.150722640552623,0,0,0,0,0,0,0,0,0,0,0.209446706813455,0,0,0,0,0.599162557619291,0.915001205637253,4.64921102817598,0.521472960576829,1.79000820131231,0.62336413367868,0.648965052271031,0.203678727700633,0.248813941220186,0,0.210441855886474,0.260240885925407,0,0,0.452114453507145,0.340182495756639,0.384341160854549,0.374806898238915,0.258703370739016,0,0.378212160335639,0,0,0.278047249225598,0,0.205782136407943,0.199034266818493,0,0,0,0,0.234526059981096,0,0,0,0,0,0,0,0,0,0,0,0,0,1.05144974282064,0.514523061896422,0,0,0.426576501070468,0,0,0,0,0,0,0,0,0.198956472041151,0,0,0,0,0,0,0,0,0,0.0701358198903186,0,0,0,0,0,0,0,0.224862112384854,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.234690248288502,0,0,0.195133647857799,0.157635144106191,0,0,0,0,0,0,0,0,0,0.160550589987792,0.35163505977661,0.491804836130026,0,0,0,0,0,0,0,0,0.292255857911312,0,0.963963949265421,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.517434735131018,0.214337035031592,0,0.178368817602071,0,0.304464949114599,0,0,0,0.16488625294148,0,0.241251699712623,0.238744688006273,0.492422699235184,0,0,0,0.206386867963223,0.185194527369712,0,0.136694227721025,0,0.169978429993855,0.139951452323658,0,0,0.158167996790568,0,0.108005340821801,0,0,0,0.0826534557253359,0,0,0,0.56369293868419,0.598066184175915,1.65458490457098,0.777804753376191,0.645799117388655,0.168956125490778,0,0,0.314578033277133,0,0,0,0,0,0,0,0,0,0,0.302899349844443,0,0.100826185136841,0,0,0,0,0,0.0897138566094757,0,0,0,0,0,0,0.564751842617067,0.920650473014354,1.71868654031819,0.859265911718438,2.05524755931193,1.5107877947794,2.02506750069542,1.35096360967266,1.35942722695261,1.55328093525546,0.518936737920883,0.399024873401031,1.19513524027894,0,0.209613162627982,0.183843508450014,0.44449345560323,0.824140228955577,0,0,0.25347929989024,0.565879024158229,0.0936415074698824,0.192075457214608,0.34461281373368,0,0.115884325944855,0.192909220463705,0.412085900803307,0,0.342869252385415,0,0,0.145346416632329,0.282328141245992,0.423073039458382,0.365855945745545,0,0.407412341537585,0,0,0.197008964751127,0,0.464810523557898,0.192906610981141,0.499621155875892,0.467863216890817,0.429742108096597,0,0.441182838239031,0 | |||
|short_description=p5@Pdzd4 | |||
}} |
Revision as of 10:20, 6 August 2015
Short description: | p5@Pdzd4 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_5_at_Pdzd4_5end |
Coexpression cluster: | MCL_coexpression_mm9:13 |
Association with transcript: | 370bp_to_ENSMUST00000002080, ENSMUST00000114438, NM_001029868, uc009tmt.1, uc009tmu.1_5end |
EntrezGene: | 245469 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 2.58e-36 | 23 |
neuroblast (sensu Vertebrata) | 2.58e-36 | 23 |
neuron | 3.04e-24 | 33 |
neuronal stem cell | 3.04e-24 | 33 |
neuroblast | 3.04e-24 | 33 |
electrically signaling cell | 3.04e-24 | 33 |
electrically responsive cell | 5.71e-20 | 39 |
electrically active cell | 5.71e-20 | 39 |
neuron of cerebral cortex | 5.80e-19 | 6 |
neural cell | 8.79e-18 | 43 |
ectodermal cell | 2.68e-17 | 44 |
neurectodermal cell | 2.68e-17 | 44 |
striatum neuron | 4.94e-11 | 3 |
hippocampal neuron | 4.42e-10 | 3 |
embryonic cell | 1.46e-09 | 70 |
neuron of the dorsal spinal cord | 6.09e-07 | 2 |