FF:10246-104B3: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{f5samples
|id=FF:10246-104B3
|name=visual cortex - Mecp knockout, neonate N30, donor1
|sample_id=10246
|rna_tube_id=
|rna_box=104
|rna_position=B3
|sample_cell_lot=N/...") |
No edit summary |
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| Line 3: | Line 3: | ||
|name=visual cortex - Mecp knockout, neonate N30, donor1 | |name=visual cortex - Mecp knockout, neonate N30, donor1 | ||
|sample_id=10246 | |sample_id=10246 | ||
|rna_tube_id= | |rna_tube_id=104B3 | ||
|rna_box=104 | |rna_box=104 | ||
|rna_position=B3 | |rna_position=B3 | ||
| Line 11: | Line 11: | ||
|rna_lot_number=N/A | |rna_lot_number=N/A | ||
|rna_catalog_number=N/A | |rna_catalog_number=N/A | ||
|sample_species= | |sample_species=mus musculus | ||
|sample_strain= | |sample_strain= | ||
|sample_dev_stage=postnatal day 30 | |sample_dev_stage=postnatal day 30 | ||
| Line 20: | Line 20: | ||
|sample_ethnicity=N/A | |sample_ethnicity=N/A | ||
|rna_rin= | |rna_rin= | ||
|rna_od260/230=0. | |rna_od260/230=0.71 | ||
|rna_od260/280=2. | |rna_od260/280=2.08 | ||
|sample_cell_type=mixed | |sample_cell_type=mixed | ||
|sample_cell_line=N/A | |sample_cell_line=N/A | ||
| Line 29: | Line 29: | ||
|rna_sample_type=Visual cortex tissue | |rna_sample_type=Visual cortex tissue | ||
|rna_extraction_protocol=Total RNA Trizol Qiagen minElute | |rna_extraction_protocol=Total RNA Trizol Qiagen minElute | ||
|rna_weight_ug=6. | |rna_weight_ug=6.78 | ||
|rna_concentration= | |rna_concentration=0.565 | ||
|sample_note= | |sample_note= | ||
|profile_hcage=CNhs13042,LSID999,,COMPLETED | |profile_hcage=CNhs13042,LSID999,release012,COMPLETED | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
| Line 40: | Line 40: | ||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|sample_description= | |sample_description= | ||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 67: | Line 66: | ||
|fonse_treatment= | |fonse_treatment= | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|top_motifs= | |||
}} | }} | ||
Revision as of 17:59, 27 February 2012
| Name: | visual cortex - Mecp knockout, neonate N30, donor1 |
|---|---|
| Species: | mus musculus |
| Library ID: | {{{library_id}}} |
| Sample type: | {{{sample_category}}} |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
|
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
{{{is_a}}}
part_of relathionship
{{{part_of}}}
has_quality relathionship
{{{has_quality}}}
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
UBERON: Anatomy
0000025 (tube)
0000033 (head)
0000061 (anatomical structure)
0000062 (organ)
0000064 (organ part)
0000073 (regional part of nervous system)
0000153 (anterior region of body)
0000411 (visual cortex)
0000465 (material anatomical entity)
0000467 (anatomical system)
0000468 (multi-cellular organism)
0000475 (organism subdivision)
0000479 (tissue)
0000480 (anatomical group)
0000481 (multi-tissue structure)
0000922 (embryo)
0000923 (germ layer)
0000924 (ectoderm)
0000955 (brain)
0000956 (cerebral cortex)
0001016 (nervous system)
0001017 (central nervous system)
0001049 (neural tube)
0001062 (anatomical entity)
0001869 (cerebral hemisphere)
0001890 (forebrain)
0001893 (telencephalon)
0002050 (embryonic structure)
0002346 (neurectoderm)
0002532 (epiblast (generic))
0002616 (regional part of brain)
0002619 (regional part of cerebral cortex)
0002780 (regional part of forebrain)
0002791 (regional part of telencephalon)
0003056 (pre-chordal neural plate)
0003075 (neural plate)
0003080 (anterior neural tube)
0004121 (ectoderm-derived structure)
0005068 (neural rod)
0005291 (embryonic tissue)
0005423 (developing anatomical structure)
0006598 (presumptive structure)
0007135 (neural keel)
0007284 (presumptive neural plate)
FF: FANTOM5
NA
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
NA
