Coexpression cluster:C2272: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
| Line 8: | Line 8: | ||
|tf_chipseq_enrich=CCNT2#905;4:6.33620157696263:0.000620310058721564:0.0051156476802607!E2F1#1869;4:4.90738921487932:0.00172402235736179:0.010633388707288!E2F6#1876;4:5.01715573169739:0.0015780219347306:0.00995632410084752!EGR1#1958;4:4.98817909481014:0.00161501150007605:0.0101321671205889!ELF1#1997;4:4.25809795880754:0.00304152556578124:0.0160674703371081!ELK4#2005;4:16.235681658468:1.43847748454449e-05:0.000343076387322087!ETS1#2113;4:9.72876092220234:0.000111595531741814:0.00154369877345474!GABPB1#2553;4:7.06768383618217:0.000400687686442317:0.00389931245661099!HEY1#23462;4:4.04011104310571:0.0037530463691798:0.0185694717524526!HMGN3#9324;4:8.17854772335059:0.000223457028444047:0.002477981375416!IRF1#3659;4:7.6371637535639:0.000293885399618549:0.00307053794025226!MYC#4609;4:5.2222818716094:0.00134430939527274:0.00886353086697534!NFKB1#4790;4:5.48806342419384:0.00110219956630198:0.00767161749450265!NRF1#4899;4:12.2102794477109:4.49717228915276e-05:0.00079257539100038!PAX5#5079;4:6.66956553117783:0.000505277416948326:0.00443376475791179!POU2F2#5452;4:9.10612405774252:0.00014539566517493:0.00188212417888008!SIN3A#25942;4:5.40888472681514:0.00116817238488516:0.00795013395705857!SPI1#6688;4:8.20432350852273:0.00022066188152768:0.00249304481229656!TAF1#6872;4:3.34304628574529:0.00800566489870165:0.0321565953753895!TBP#6908;4:3.70677068709639:0.00529637781478435:0.0243720656766947!ZEB1#6935;4:16.8884320175439:1.22862303393937e-05:0.000303635023761462!ZNF263#10127;4:8.22184163701068:0.000218787118095832:0.00248233653740474 | |tf_chipseq_enrich=CCNT2#905;4:6.33620157696263:0.000620310058721564:0.0051156476802607!E2F1#1869;4:4.90738921487932:0.00172402235736179:0.010633388707288!E2F6#1876;4:5.01715573169739:0.0015780219347306:0.00995632410084752!EGR1#1958;4:4.98817909481014:0.00161501150007605:0.0101321671205889!ELF1#1997;4:4.25809795880754:0.00304152556578124:0.0160674703371081!ELK4#2005;4:16.235681658468:1.43847748454449e-05:0.000343076387322087!ETS1#2113;4:9.72876092220234:0.000111595531741814:0.00154369877345474!GABPB1#2553;4:7.06768383618217:0.000400687686442317:0.00389931245661099!HEY1#23462;4:4.04011104310571:0.0037530463691798:0.0185694717524526!HMGN3#9324;4:8.17854772335059:0.000223457028444047:0.002477981375416!IRF1#3659;4:7.6371637535639:0.000293885399618549:0.00307053794025226!MYC#4609;4:5.2222818716094:0.00134430939527274:0.00886353086697534!NFKB1#4790;4:5.48806342419384:0.00110219956630198:0.00767161749450265!NRF1#4899;4:12.2102794477109:4.49717228915276e-05:0.00079257539100038!PAX5#5079;4:6.66956553117783:0.000505277416948326:0.00443376475791179!POU2F2#5452;4:9.10612405774252:0.00014539566517493:0.00188212417888008!SIN3A#25942;4:5.40888472681514:0.00116817238488516:0.00795013395705857!SPI1#6688;4:8.20432350852273:0.00022066188152768:0.00249304481229656!TAF1#6872;4:3.34304628574529:0.00800566489870165:0.0321565953753895!TBP#6908;4:3.70677068709639:0.00529637781478435:0.0243720656766947!ZEB1#6935;4:16.8884320175439:1.22862303393937e-05:0.000303635023761462!ZNF263#10127;4:8.22184163701068:0.000218787118095832:0.00248233653740474 | ||
|tfbs_overrepresentation=0.191353,0.0774498,0.814139,0.0631091,0.257053,0.363996,0.0569281,0.510252,0.043387,0.0341265,0.181435,0.000427152,0.243414,0.164339,0.193153,0.0816702,0.0179544,0.128744,0.0698403,0.141416,0.243245,0.172742,0.107781,0.124486,0.0550418,0.276459,0.268949,0.119094,0.186914,0.122514,0.26347,0.149094,0.0239693,0.267529,0.0877018,0.111013,0.460009,0.0568767,0.157159,0.0879352,0.126525,0.0326801,0.182216,0.2375,0.157881,0.0480278,0.0503649,0.234372,0.145553,0.158244,0.19996,0.0715789,0.0924421,0.12203,0.255843,0.0508907,0.140644,0.273035,0.103044,0.138225,0.0390464,0.194086,0.142115,0.0999599,0.0720888,0.0667453,0.439574,0.0792005,0.113084,0.216289,0.470097,0.0892037,0.116917,0.155921,0.00995563,0.0227583,0.126543,0.0578308,0.0493551,0.00965832,0.125428,0.290468,0.0562614,0.150119,0.368178,0.320801,0.0848546,0.268505,0.131915,0.0827752,0.112676,0.0655645,0.12511,0.0626609,0.112199,0.150351,0.690341,0.199405,0.121709,0.347653,0.0759036,0.350158,0.184542,0.0491142,0.280878,0.0541957,0.0883058,0.423154,6.56494e-05,0.34189,0.23573,0.0450707,0.194256,0.0235108,0.132631,0.0447483,0.0270258,0.0748174,0.180926,0.110194,0.215858,0.275495,0.182323,0.112709,0.134107,0.228632,0.119051,0.0196757,0.110868,0.175735,0.078637,0.0985137,0.0755515,0.0302655,0.164103,0.141472,0.085537,0.0730922,0.0438087,0.0052702,0.0302521,0.166414,0.262198,0.202388,0.0346699,0.0913381,0.129544,0.110696,0.0515825,0.157774,0.258146,0.186826,0.233377,0.0352845,0.0565357,0.153577,0.0984158,0.29227,0.0683304,0.0447121,0.291455,0.124982,0.152417,0.192028,0.346873,0.149398,0.0530169,0.166112,0.0534404,0.392741,0.2321,0.179282,0.564569,0.0715212,0.105131,0.118265,0.182591,0.234755,0.230552,0.0472274,0.205973,0.159869,0.0363736,0.15105,0.0970713,0.155237,0.0304129,0.0532055,0.108938,0.224443,0.140245,0.241581,0.160458,0.0477937,0.147332,0.0622664,0.102951,0.0795624,0.0891668,0.14349,0.117261,0.0797088,0.0408965,0.0799774,0.177664,0.329956,0.0687034,0.197158,0.265132,0.230439,0.0606832,0.136664,0.158184,0.147626,0.393313,0.218801,0.0244227,0.132273,0.0830988,0.134907,0.184613,0.462724,0.202467,0.208718,0.0972471,0.165147,0.180711,0.112956,0.0797807,0.0790532,0.309911,0.476758,0.0553945,0.10068,0.125804,0.122288,0.0624687,0.334388,0.21183,0.275612,0.235571,0.435782,0.128998,0.109226,0.151958,0.178155,0.107176,0.146021,0.463127,0.15291,0.206234,0.238926,0.239646,0.128521,0.1286,0.207017,0.14037,0.259646,0.0916845,0.687863,0.0816983,0.226367,0.211672,0.167038,0.0457509,0.106603,0.106727,0.12083,0.154253,0.0993998,0.0711631,0.0834863,0.0594434,0.000171556,0.113754,0.0504034,0.169684,0.690367,0.810881,0.149583,0.389734,0.668426,0.901171,0.888682,0.104083,7.28272e-05,0.332539,0.545329,0.464128,0.389374,0.594055,0.414547,0.489273,0.413223,0.084046,0.720642,0.34505,0.369161,0.500422,0.49089,0.687176,0.123196,0.241524,0.45167,0.234628,0.520726,0.143893,0.41477,0.279946,0.00704767,0.467825,0.563725,0.0138839,0.632838,0.624969,0.460819,0.511459,0.586668,0.322903,0.350886,0.380582,0.583749,0.398372,0.286293,0.606558,0.127626,0.359128,0.395864,0.109703,0.368633,0.547291,0.0292801,0.512763,0.369971,0.578349,0.537928,0.464342,0.683088,0.131933,0.235444,0.0835105,0.668093,0.840703,0.349116,0.302142,0.239545,0.432689,0.640367,0.343881,0.730486,0.606382,0.617741,0.626346,0.316925,0.356561,0.573659,0.211506,0.0883859,0.0962508,0.238465,0.122819,0.0138092,0.6873,0.159267,0.0636247,0.284591,0.656755,0.54723,0.280307,0.393583,0.076625,0.0596868,0.0984075,0.293026,0.0537754,0.694744,0.605423,0.372182,0.429205,0.214741,0.365653,0.41035,0.453022,0.35234,0.644643,0.525923,0.291917,0.421082,0.00338934,0.202782,0.307342,0.517933,0.584705,0.517001,0.620475,0.926442,0.419676,0.188259,0.189182,0.00443112,0.46699,0.546448,0.560187,0.321282,0.021087,0.0616078,0.178485,0.329745,0.175552,0.129238,0.651295,0.370995,0.360161,0.429696,0.386216,0.385297,0.706685,0.606408,0.259338,0.360203,0.00825487,0.447838,0.289666,0.500627,0.513045,0.00341265,0.565545,0.845507,0.265037,0.0186042,0.0543569,0.53531,0.341771,0.424526,0.0236936,0.356381,0.184395,0.55524,0.624689,0.206945,0.304719,0.462531,0.0056127,0.244339,0.117049,0.0786167,0.0185366,0.376317,0.433821,0.64428,0.436806,0.576549,0.499072,0.744662,0.382579,0.397546,3.33555e-06,0.0735469,0.248103,0.102621,0.0760107,0.187642,0.286156,0.261868,0.541583,0.540322,0.247151,0.146385,0.0112321,0.0576261,0.382413,0.164977,0.175633,0.139918,0.00937608,0.0828344,0.135364,0.0238089,0.383126,0.0719157,0.00468928,0.0614918,0.219485,0.149782,0.136923,0.118103,0.113892,0.207214,0.140201,0.0580534,0.00518407,0.161297,0.168389,0.270152,0.249506,0.432751,0.0660736,0.108971,0.0879235,0.235214,0.145546,0.28124,0.417003,0.251882,0.172263,0.00293506,0.0637178,0.257309,0.0334797,0.166608,0.227224,0.030904,0.219023,0.115115,0.124916,0.0149794,0.28498,0.140114,0.348988,0.00641248,0.224626,0.183585,0.00419343,0.03989,0.171436,0.05892,0.0691994,0.268299,0.198844,0.104946,0.127738,0.207615,0.161213,0.118999,0.0737069,0.357807,0.621787,0.178782,0.019419,0.0866228,0.271849,0.282657,0.105411,0.0997542,0.209692,0.248936,0.0725263,0.102587,0.0742013,0.0552936,0.0457886,0.0514927,0.324236,0.220368,0.258624,0.064656,0.226143,0.000447146,0.0438521,0.435508,0.281453,0.0522771,0.0787278,0.515487,0.159873,0.142462,0.143935,0.332403,0.0379537,0.0922008,0.0188872,0.051459,0.114868,0.0726892,0.18732,0.32305,0.00454179,0.245002,0.170848,0.0303627,0.302909,0.0109447,0.100188,0.223102,0.107653,0.00265514,0.419621,0.191914,6.06041e-05,0.216557,0.182956,0.116818,5.67323e-08,0.36316,0.0625685,0.124464,0.544477,0.173134,0.101893,0.142875,0.167635,0.171311,0.787798,0.548036,0.0685131,0.130287,0.0661526,0.0815772,0.0993937,0.122878,0.187329,0.0451012,0.0976639,0.351199,0.833813,0.758305,0.278645,0.365775,0.155708,0.248017,0.22995,1.53275e-05,0.0760151,0.0629459,0.486024,0.0803251,0.226641,0.379174,0.0939463,0.286748,0.367925,0.0471607,0.163865,0.226359,0.626334,0.881117,0.265324,0.279778,0.141699,0.0887743,0.142302,0.0653269,0.125712,0.264432,0.0994829,0.0604041,0.144185,0.0925862,0.289561,0.199201,0.049937,0.172796,0.0595495,0.071232,0.149346,0.121978,0.22302,0.137423,0.284016,0.0754883,0.299492,0.100006,0.0756617,0.197817,0.251078,0.279874,0.133127,0.016612,0.223717,0.426452,0.196838,0.0826805,0.246601,0.193021,0.608002,0.202165,0.0946865,0.120618,0.079499,0.18762,0.195618,0.127688,0.201169,0.220353,0.24948,0.178639,0.291976,0.320355,0.364334,0.15547,0.110256,0.415419,0.14794,0.147307,0.240761,0.225961,0.124417,0.335582,0.317428,0.182843,0.130771,0.327768,0.135777,0.147842,0.0339286,0.217363,0.00738129,0.690952,0.21618,0.243266,0.107021,0.238657,0.20272,0.392453,0.0724243,0.0780061,0.315336,0.230477,0.279823,0.295555,0.502112,6.08835e-05,0.0478217,0.507599,0.170854,0.0575231,0.174063,0.0368787,0.003653,0.54832,0.502211,0.296013,0.282366,0.0434876,0.459994,0.523209,0.189126,0.25423,0.490559,0.45013,0.500698,0.472542,0.685908,0.0133357,0.00109146,0.0301009,0.483077,3.18281e-09,0.603763,0.541914,0.0778742,0.938109,0.514482,0.290703,0.622694,0.138899,0.139104,0.360199,0.608176,0.657141,0.824761,0.365494,0.212703,0.56318,0.364079,0.680099,0.579886,0.421038,0.569409,0.328518,0.545608,0.310552,0.143396,0.483764,0.528161,0.0201581,0.209437,0.11765,0.748403,0.598945,0.169076,0.464001,0.152018,0.579004,0.870272,0.278028,0.586133,0.261575,0.257956,0.264245,0.379063,0.326516,0.16985,0.436016,0.00431716,0.202522,0.183837,0.507324,0.126097,0.3955,0.0215868,0.212239,0.294954,0.156999,0.35974,0.667777,0.39549,0.234254,0.357409,0.00116299,0.00995016,0.50338,0.620526,0.404625,0.172147,0.424691,0.357704,0.479581,0.259048,0.0230743,0.274432,0.284496,0.512545,0.162017,0.00022173,0.829402,0.321001,0.263302,0.552023,0.180735,0.775168,0.216102,0.254659,0.109605,0.397869,0.582542,0.226491,0.417131,0.463987,0.627953,0.503881,0.454761,0.639483,0.483658,0.452129,0.301581,0.0376831,0.346776,0.466529,0.545655,0.438176,0.349112,0.391754,0.0862349,0.307816,0.461541,0.0866806,0.382854,0.598787,0.478745,0.611661,0.319747,0.00431644,0.557967,0.608127,0.282281,0.245336,0.2536,0.000214659,0.564333,0.70712,0.387134,0.559969,0.358813,0.0261538,0.000260496,0.493455,0.346636,0.457747,0.348802,0.476541,0.579645,0.447581,0.42505,0.000245939,0.000319058,0.0286377,0.416962,0.632833,0.378333,0.152547,0.00382285,0.22798,0.102495,0.350933,0.263896,0.0446972,0.24452,0.329284,0.242783,0.0947248,0.336551,0.210656,0.246234,0.02408,0.281295,0.267248,0.118257,0.125087,0.215123,0.321224,0.469461,0.325254,0.266651,0.546295,0.231754,0.249415,0.000392363,0.285648,0.427316,0.391071,0.279553,0.25563,0.240967,0.160955,0.256687,0.0432189,0.122439,0.16188,0.23235,0.290415,0.0099749,0.112422,0.170886,0.267687,0.315656,0.284866,0.0887542,0.267811,0.00865954,0.147872,0.189388,0.293546,0.210125,0.292967,0.218414,0.0509944,0.000118011,0.0689852,0.0602698,0.341188,0.259328,0.437467,0.201057,0.15696,0.00875193,0.141936,0.0786166,0.276997,0.205513,0.282389,0.251421,0.162089,0.0617695,0.387837,0.233244,0.000100809,0.0606443,0.195748,0.27845,0.161712,0.237871,0.0311922,0.095257,0.328852,0.332769,0.262022,0.274403,0.00394881,0.184534,0.248707,0.0567862,0.15156,0.287598,0.313858,0.223773,0.25788,0.181895,0.253768,0.30702,0.202977,0.170837,0.327002,0.0452813,0.222656,0.228479,0.127111,0.259989,0.390754,0.355805,0.279739,0.108118,0.259901,0.000507733,0.0708274,0.0710478,0.196248,0.102645,0.0539258,0.0709978,0.0154764,0.332746,0.271338,0.242121,0.298673,0.244395,0.106889,0.128632,0.0845989,0.159153,0.0842401,0.13698,0.0874421,0.100355,0.167854,0.142846,0.0583767,0.088258,0.117657,0.0486914,0.175784,0.262778,0.373453,0.362662,0.433518,0.184359,0.334474,0.325785,0.257476,0.291176,0.376537,0.322827,0.229571,0.359036,0.335984,0.171704,0.208256,0.265058,0.256405,0.362898,0.302133,0.40806,0.151361,0.279606,0.00499935,0.150674,0.251128,0.246177,0.0103202,0.35852,0.0571822,0.213257,0.287217,0.122782,0.410951,0.289049,0.266974,0.125746,0.112897,0.398354,0.222091,0.205977,0.34423,0.0936726,0.343425,0.132374,0.285122,0.22741,0.203996,0.276721,0.0585101,0.264707,0.450113 | |tfbs_overrepresentation=0.191353,0.0774498,0.814139,0.0631091,0.257053,0.363996,0.0569281,0.510252,0.043387,0.0341265,0.181435,0.000427152,0.243414,0.164339,0.193153,0.0816702,0.0179544,0.128744,0.0698403,0.141416,0.243245,0.172742,0.107781,0.124486,0.0550418,0.276459,0.268949,0.119094,0.186914,0.122514,0.26347,0.149094,0.0239693,0.267529,0.0877018,0.111013,0.460009,0.0568767,0.157159,0.0879352,0.126525,0.0326801,0.182216,0.2375,0.157881,0.0480278,0.0503649,0.234372,0.145553,0.158244,0.19996,0.0715789,0.0924421,0.12203,0.255843,0.0508907,0.140644,0.273035,0.103044,0.138225,0.0390464,0.194086,0.142115,0.0999599,0.0720888,0.0667453,0.439574,0.0792005,0.113084,0.216289,0.470097,0.0892037,0.116917,0.155921,0.00995563,0.0227583,0.126543,0.0578308,0.0493551,0.00965832,0.125428,0.290468,0.0562614,0.150119,0.368178,0.320801,0.0848546,0.268505,0.131915,0.0827752,0.112676,0.0655645,0.12511,0.0626609,0.112199,0.150351,0.690341,0.199405,0.121709,0.347653,0.0759036,0.350158,0.184542,0.0491142,0.280878,0.0541957,0.0883058,0.423154,6.56494e-05,0.34189,0.23573,0.0450707,0.194256,0.0235108,0.132631,0.0447483,0.0270258,0.0748174,0.180926,0.110194,0.215858,0.275495,0.182323,0.112709,0.134107,0.228632,0.119051,0.0196757,0.110868,0.175735,0.078637,0.0985137,0.0755515,0.0302655,0.164103,0.141472,0.085537,0.0730922,0.0438087,0.0052702,0.0302521,0.166414,0.262198,0.202388,0.0346699,0.0913381,0.129544,0.110696,0.0515825,0.157774,0.258146,0.186826,0.233377,0.0352845,0.0565357,0.153577,0.0984158,0.29227,0.0683304,0.0447121,0.291455,0.124982,0.152417,0.192028,0.346873,0.149398,0.0530169,0.166112,0.0534404,0.392741,0.2321,0.179282,0.564569,0.0715212,0.105131,0.118265,0.182591,0.234755,0.230552,0.0472274,0.205973,0.159869,0.0363736,0.15105,0.0970713,0.155237,0.0304129,0.0532055,0.108938,0.224443,0.140245,0.241581,0.160458,0.0477937,0.147332,0.0622664,0.102951,0.0795624,0.0891668,0.14349,0.117261,0.0797088,0.0408965,0.0799774,0.177664,0.329956,0.0687034,0.197158,0.265132,0.230439,0.0606832,0.136664,0.158184,0.147626,0.393313,0.218801,0.0244227,0.132273,0.0830988,0.134907,0.184613,0.462724,0.202467,0.208718,0.0972471,0.165147,0.180711,0.112956,0.0797807,0.0790532,0.309911,0.476758,0.0553945,0.10068,0.125804,0.122288,0.0624687,0.334388,0.21183,0.275612,0.235571,0.435782,0.128998,0.109226,0.151958,0.178155,0.107176,0.146021,0.463127,0.15291,0.206234,0.238926,0.239646,0.128521,0.1286,0.207017,0.14037,0.259646,0.0916845,0.687863,0.0816983,0.226367,0.211672,0.167038,0.0457509,0.106603,0.106727,0.12083,0.154253,0.0993998,0.0711631,0.0834863,0.0594434,0.000171556,0.113754,0.0504034,0.169684,0.690367,0.810881,0.149583,0.389734,0.668426,0.901171,0.888682,0.104083,7.28272e-05,0.332539,0.545329,0.464128,0.389374,0.594055,0.414547,0.489273,0.413223,0.084046,0.720642,0.34505,0.369161,0.500422,0.49089,0.687176,0.123196,0.241524,0.45167,0.234628,0.520726,0.143893,0.41477,0.279946,0.00704767,0.467825,0.563725,0.0138839,0.632838,0.624969,0.460819,0.511459,0.586668,0.322903,0.350886,0.380582,0.583749,0.398372,0.286293,0.606558,0.127626,0.359128,0.395864,0.109703,0.368633,0.547291,0.0292801,0.512763,0.369971,0.578349,0.537928,0.464342,0.683088,0.131933,0.235444,0.0835105,0.668093,0.840703,0.349116,0.302142,0.239545,0.432689,0.640367,0.343881,0.730486,0.606382,0.617741,0.626346,0.316925,0.356561,0.573659,0.211506,0.0883859,0.0962508,0.238465,0.122819,0.0138092,0.6873,0.159267,0.0636247,0.284591,0.656755,0.54723,0.280307,0.393583,0.076625,0.0596868,0.0984075,0.293026,0.0537754,0.694744,0.605423,0.372182,0.429205,0.214741,0.365653,0.41035,0.453022,0.35234,0.644643,0.525923,0.291917,0.421082,0.00338934,0.202782,0.307342,0.517933,0.584705,0.517001,0.620475,0.926442,0.419676,0.188259,0.189182,0.00443112,0.46699,0.546448,0.560187,0.321282,0.021087,0.0616078,0.178485,0.329745,0.175552,0.129238,0.651295,0.370995,0.360161,0.429696,0.386216,0.385297,0.706685,0.606408,0.259338,0.360203,0.00825487,0.447838,0.289666,0.500627,0.513045,0.00341265,0.565545,0.845507,0.265037,0.0186042,0.0543569,0.53531,0.341771,0.424526,0.0236936,0.356381,0.184395,0.55524,0.624689,0.206945,0.304719,0.462531,0.0056127,0.244339,0.117049,0.0786167,0.0185366,0.376317,0.433821,0.64428,0.436806,0.576549,0.499072,0.744662,0.382579,0.397546,3.33555e-06,0.0735469,0.248103,0.102621,0.0760107,0.187642,0.286156,0.261868,0.541583,0.540322,0.247151,0.146385,0.0112321,0.0576261,0.382413,0.164977,0.175633,0.139918,0.00937608,0.0828344,0.135364,0.0238089,0.383126,0.0719157,0.00468928,0.0614918,0.219485,0.149782,0.136923,0.118103,0.113892,0.207214,0.140201,0.0580534,0.00518407,0.161297,0.168389,0.270152,0.249506,0.432751,0.0660736,0.108971,0.0879235,0.235214,0.145546,0.28124,0.417003,0.251882,0.172263,0.00293506,0.0637178,0.257309,0.0334797,0.166608,0.227224,0.030904,0.219023,0.115115,0.124916,0.0149794,0.28498,0.140114,0.348988,0.00641248,0.224626,0.183585,0.00419343,0.03989,0.171436,0.05892,0.0691994,0.268299,0.198844,0.104946,0.127738,0.207615,0.161213,0.118999,0.0737069,0.357807,0.621787,0.178782,0.019419,0.0866228,0.271849,0.282657,0.105411,0.0997542,0.209692,0.248936,0.0725263,0.102587,0.0742013,0.0552936,0.0457886,0.0514927,0.324236,0.220368,0.258624,0.064656,0.226143,0.000447146,0.0438521,0.435508,0.281453,0.0522771,0.0787278,0.515487,0.159873,0.142462,0.143935,0.332403,0.0379537,0.0922008,0.0188872,0.051459,0.114868,0.0726892,0.18732,0.32305,0.00454179,0.245002,0.170848,0.0303627,0.302909,0.0109447,0.100188,0.223102,0.107653,0.00265514,0.419621,0.191914,6.06041e-05,0.216557,0.182956,0.116818,5.67323e-08,0.36316,0.0625685,0.124464,0.544477,0.173134,0.101893,0.142875,0.167635,0.171311,0.787798,0.548036,0.0685131,0.130287,0.0661526,0.0815772,0.0993937,0.122878,0.187329,0.0451012,0.0976639,0.351199,0.833813,0.758305,0.278645,0.365775,0.155708,0.248017,0.22995,1.53275e-05,0.0760151,0.0629459,0.486024,0.0803251,0.226641,0.379174,0.0939463,0.286748,0.367925,0.0471607,0.163865,0.226359,0.626334,0.881117,0.265324,0.279778,0.141699,0.0887743,0.142302,0.0653269,0.125712,0.264432,0.0994829,0.0604041,0.144185,0.0925862,0.289561,0.199201,0.049937,0.172796,0.0595495,0.071232,0.149346,0.121978,0.22302,0.137423,0.284016,0.0754883,0.299492,0.100006,0.0756617,0.197817,0.251078,0.279874,0.133127,0.016612,0.223717,0.426452,0.196838,0.0826805,0.246601,0.193021,0.608002,0.202165,0.0946865,0.120618,0.079499,0.18762,0.195618,0.127688,0.201169,0.220353,0.24948,0.178639,0.291976,0.320355,0.364334,0.15547,0.110256,0.415419,0.14794,0.147307,0.240761,0.225961,0.124417,0.335582,0.317428,0.182843,0.130771,0.327768,0.135777,0.147842,0.0339286,0.217363,0.00738129,0.690952,0.21618,0.243266,0.107021,0.238657,0.20272,0.392453,0.0724243,0.0780061,0.315336,0.230477,0.279823,0.295555,0.502112,6.08835e-05,0.0478217,0.507599,0.170854,0.0575231,0.174063,0.0368787,0.003653,0.54832,0.502211,0.296013,0.282366,0.0434876,0.459994,0.523209,0.189126,0.25423,0.490559,0.45013,0.500698,0.472542,0.685908,0.0133357,0.00109146,0.0301009,0.483077,3.18281e-09,0.603763,0.541914,0.0778742,0.938109,0.514482,0.290703,0.622694,0.138899,0.139104,0.360199,0.608176,0.657141,0.824761,0.365494,0.212703,0.56318,0.364079,0.680099,0.579886,0.421038,0.569409,0.328518,0.545608,0.310552,0.143396,0.483764,0.528161,0.0201581,0.209437,0.11765,0.748403,0.598945,0.169076,0.464001,0.152018,0.579004,0.870272,0.278028,0.586133,0.261575,0.257956,0.264245,0.379063,0.326516,0.16985,0.436016,0.00431716,0.202522,0.183837,0.507324,0.126097,0.3955,0.0215868,0.212239,0.294954,0.156999,0.35974,0.667777,0.39549,0.234254,0.357409,0.00116299,0.00995016,0.50338,0.620526,0.404625,0.172147,0.424691,0.357704,0.479581,0.259048,0.0230743,0.274432,0.284496,0.512545,0.162017,0.00022173,0.829402,0.321001,0.263302,0.552023,0.180735,0.775168,0.216102,0.254659,0.109605,0.397869,0.582542,0.226491,0.417131,0.463987,0.627953,0.503881,0.454761,0.639483,0.483658,0.452129,0.301581,0.0376831,0.346776,0.466529,0.545655,0.438176,0.349112,0.391754,0.0862349,0.307816,0.461541,0.0866806,0.382854,0.598787,0.478745,0.611661,0.319747,0.00431644,0.557967,0.608127,0.282281,0.245336,0.2536,0.000214659,0.564333,0.70712,0.387134,0.559969,0.358813,0.0261538,0.000260496,0.493455,0.346636,0.457747,0.348802,0.476541,0.579645,0.447581,0.42505,0.000245939,0.000319058,0.0286377,0.416962,0.632833,0.378333,0.152547,0.00382285,0.22798,0.102495,0.350933,0.263896,0.0446972,0.24452,0.329284,0.242783,0.0947248,0.336551,0.210656,0.246234,0.02408,0.281295,0.267248,0.118257,0.125087,0.215123,0.321224,0.469461,0.325254,0.266651,0.546295,0.231754,0.249415,0.000392363,0.285648,0.427316,0.391071,0.279553,0.25563,0.240967,0.160955,0.256687,0.0432189,0.122439,0.16188,0.23235,0.290415,0.0099749,0.112422,0.170886,0.267687,0.315656,0.284866,0.0887542,0.267811,0.00865954,0.147872,0.189388,0.293546,0.210125,0.292967,0.218414,0.0509944,0.000118011,0.0689852,0.0602698,0.341188,0.259328,0.437467,0.201057,0.15696,0.00875193,0.141936,0.0786166,0.276997,0.205513,0.282389,0.251421,0.162089,0.0617695,0.387837,0.233244,0.000100809,0.0606443,0.195748,0.27845,0.161712,0.237871,0.0311922,0.095257,0.328852,0.332769,0.262022,0.274403,0.00394881,0.184534,0.248707,0.0567862,0.15156,0.287598,0.313858,0.223773,0.25788,0.181895,0.253768,0.30702,0.202977,0.170837,0.327002,0.0452813,0.222656,0.228479,0.127111,0.259989,0.390754,0.355805,0.279739,0.108118,0.259901,0.000507733,0.0708274,0.0710478,0.196248,0.102645,0.0539258,0.0709978,0.0154764,0.332746,0.271338,0.242121,0.298673,0.244395,0.106889,0.128632,0.0845989,0.159153,0.0842401,0.13698,0.0874421,0.100355,0.167854,0.142846,0.0583767,0.088258,0.117657,0.0486914,0.175784,0.262778,0.373453,0.362662,0.433518,0.184359,0.334474,0.325785,0.257476,0.291176,0.376537,0.322827,0.229571,0.359036,0.335984,0.171704,0.208256,0.265058,0.256405,0.362898,0.302133,0.40806,0.151361,0.279606,0.00499935,0.150674,0.251128,0.246177,0.0103202,0.35852,0.0571822,0.213257,0.287217,0.122782,0.410951,0.289049,0.266974,0.125746,0.112897,0.398354,0.222091,0.205977,0.34423,0.0936726,0.343425,0.132374,0.285122,0.22741,0.203996,0.276721,0.0585101,0.264707,0.450113 | ||
|tfbs_overrepresentation_for_novel_motifs=0.590005,0.298605,0.581696,1.75588,0.534346,0.739643,0.821651,0.395818,0.392841,2.07992,2.82941,0.867962,1.62243,0.809319,0.532789,0.559384,1.05593,0.471262,0.356737,0.223552,0.581762,0.169357,0.731221,0.528529,0.632849,0.892087,0.849366,0.728867,0.537869,1.46495,0.682839,1.09415,1.10579,0.344471,1.23824,0.0842336,2.13139,0.740899,0.463978,0.371755,1.23481,0.66492,0.183156,0.53106,0.648765,0.61613,1.92371,1.65941,0.99221,1.33034,0.90714,1.94963,0.25073,1.17354,1.33024,0.812467,0.54284,0.777235,0.297448,1.8276,4.16336,0.825354,1.0193,1.02706,0.844545,2.26787,1.42026,1.79268,1.08337,1.62905,0.650393,0.402607,5.56341,1.32819,0.893276,0.859396,0.305238,1.00941,1.08,0.62601,0.362435,1.02594,0.844168,0.399165,4.58731,8.09613,5.26138,0.291738,0.934646,1.89266,1.51507,1.24792,1.11156,0.441618,0.535192,0.456994,0.354969,1.15558,0.939507,1.37313,0.465545,1.1057,2.59018,1.05974,0.979006,0.701817,1.04326,0.805616,0.632569,0.516141,0.594299,1.14697,0.575476,0.717043,1.46636,0.489254,0.393155,0.681522,0.988625,0.444962,1.31973,0.932085,0.736652,0.856196,1.57854,1.0102,0.814847,1.11673,1.36323,0.458105,1.24863,0.68598,1.37788,0.852645,1.52813,0.774456,0.676268,0.729481,1.48509,2.34913,1.94535,1.44718,0.8167,1.15194,0.980848,0.768101,0.963351,2.1895,0.661255,0.437774,0.234974,3.82793,1.24902,0.383416,1.92786,1.65997,0.917558,1.28873,0.632914,0.600782,1.44595,1.23002,1.07918,0.604379,0.997702,0.843324,1.90479,0.820225,0.0401987 | |||
}} | }} | ||
Revision as of 15:23, 26 November 2012
Full id: C2272_amniotic_chorionic_oral_glassy_colon_epidermoid_Mallassezderived
Phase1 CAGE Peaks
| Hg19::chr13:80055378..80055401,+ | p5@NDFIP2 |
| Hg19::chr13:80055403..80055426,+ | p1@NDFIP2 |
| Hg19::chr13:80055432..80055449,+ | p4@NDFIP2 |
| Hg19::chr13:80055462..80055478,+ | p6@NDFIP2 |
Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data
No results for this coexpression
Enriched Gene Ontology terms on this co-expression cluster<b>Summary:</b> Results for GOStat analysis on co-expressed clusters. Each cluster with promoters mapping to at least two different genes was analysed with GOStat (PMID: 14962934) with default parameter. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br>data
No GOStat results
Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br>disease_data<br>
| Ontology term | p-value | n |
|---|---|---|
| endo-epithelial cell | 2.69e-14 | 42 |
| endodermal cell | 1.05e-12 | 58 |
| epithelial cell of alimentary canal | 8.33e-11 | 20 |
| epithelial cell | 3.18e-10 | 253 |
| Ontology term | p-value | n |
|---|---|---|
| cell type cancer | 4.74e-08 | 143 |
| carcinoma | 7.07e-08 | 106 |
| female reproductive organ cancer | 3.85e-07 | 27 |
| reproductive organ cancer | 5.09e-07 | 29 |
Overrepresented TFBS (DNA) motifs on this co-expression cluster<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data
Novel motifs
JASPAR motifs
| Motifs | -log10(p-value) |
|---|---|
|
{{{tfbs_overrepresentation_jaspar}}} |
ENCODE TF ChIP-seq peak enrichment analysis<b>Summary:</b> For each TF and each co-expression cluster, the number of promoters with ENCODE TF ChIP signal was compared with the rest of promoters from the robust set using Fisher's exact test. Clusters with significant ChIP enrichment (q <= 0.05) after Benjamini-Hochberg correction were retained. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br><br>data
(#promoters = Number of promoters in this coexpression cluster that have ChIP signal of the TF)
| TF | #promoters | Enrichment | p-value | q-value |
|---|---|---|---|---|
| CCNT2#905 | 4 | 6.33620157696263 | 0.000620310058721564 | 0.0051156476802607 |
| E2F1#1869 | 4 | 4.90738921487932 | 0.00172402235736179 | 0.010633388707288 |
| E2F6#1876 | 4 | 5.01715573169739 | 0.0015780219347306 | 0.00995632410084752 |
| EGR1#1958 | 4 | 4.98817909481014 | 0.00161501150007605 | 0.0101321671205889 |
| ELF1#1997 | 4 | 4.25809795880754 | 0.00304152556578124 | 0.0160674703371081 |
| ELK4#2005 | 4 | 16.235681658468 | 1.43847748454449e-05 | 0.000343076387322087 |
| ETS1#2113 | 4 | 9.72876092220234 | 0.000111595531741814 | 0.00154369877345474 |
| GABPB1#2553 | 4 | 7.06768383618217 | 0.000400687686442317 | 0.00389931245661099 |
| HEY1#23462 | 4 | 4.04011104310571 | 0.0037530463691798 | 0.0185694717524526 |
| HMGN3#9324 | 4 | 8.17854772335059 | 0.000223457028444047 | 0.002477981375416 |
| IRF1#3659 | 4 | 7.6371637535639 | 0.000293885399618549 | 0.00307053794025226 |
| MYC#4609 | 4 | 5.2222818716094 | 0.00134430939527274 | 0.00886353086697534 |
| NFKB1#4790 | 4 | 5.48806342419384 | 0.00110219956630198 | 0.00767161749450265 |
| NRF1#4899 | 4 | 12.2102794477109 | 4.49717228915276e-05 | 0.00079257539100038 |
| PAX5#5079 | 4 | 6.66956553117783 | 0.000505277416948326 | 0.00443376475791179 |
| POU2F2#5452 | 4 | 9.10612405774252 | 0.00014539566517493 | 0.00188212417888008 |
| SIN3A#25942 | 4 | 5.40888472681514 | 0.00116817238488516 | 0.00795013395705857 |
| SPI1#6688 | 4 | 8.20432350852273 | 0.00022066188152768 | 0.00249304481229656 |
| TAF1#6872 | 4 | 3.34304628574529 | 0.00800566489870165 | 0.0321565953753895 |
| TBP#6908 | 4 | 3.70677068709639 | 0.00529637781478435 | 0.0243720656766947 |
| ZEB1#6935 | 4 | 16.8884320175439 | 1.22862303393937e-05 | 0.000303635023761462 |
| ZNF263#10127 | 4 | 8.22184163701068 | 0.000218787118095832 | 0.00248233653740474 |
Relative expression of the co-expression cluster<b>Summary:</b>Co-expression clusters are compared against FANTOM5 samples to obtain relative expression. <br><b>Analyst:</b>NA<br><br>link to data source<br> data
This analysis result is provided for C0 - C305 clusters.
