FFCP PHASE1:Mm9::chr4:125167932..125167948,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=14807|HGNC=|MCL_coexpression_id=593|UniProt=B1AS29|association_with_transcript=0bp_to_ENSMUST00000030676_5end|description=CAGE_peak_3_at_Grik3_5end|id=chr4:125167932..125167948,+|ontology_enrichment_celltype=CL:0000540!7.89e-20!33;CL:0000047!7.89e-20!33;CL:0000031!7.89e-20!33;CL:0000404!7.89e-20!33;CL:0000221!1.92e-17!44;CL:0000133!1.92e-17!44;CL:0002319!2.28e-17!43;CL:0000393!1.11e-14!39;CL:0000211!1.11e-14!39;CL:0000117!8.45e-13!23;CL:0000337!8.45e-13!23;CL:0000055!8.91e-13!50;CL:0000107!3.01e-08!9|ontology_enrichment_celltype_v019_2=CL:0000540,3.08e-29,33;CL:0000047,3.08e-29,33;CL:0000031,3.08e-29,33;CL:0000404,3.08e-29,33;CL:0000393,4.48e-23,39;CL:0000211,4.48e-23,39;CL:0002319,5.36e-23,43;CL:0000221,3.21e-22,44;CL:0000133,3.21e-22,44;CL:0000117,6.42e-19,23;CL:0000337,6.42e-19,23;CL:0000107,9.07e-13,9;CL:0002321,4.48e-10,70;CL:0002609,2.86e-07,6|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000073!5.09e-36!75;UBERON:0001016!5.09e-36!75;UBERON:0001017!2.04e-35!73;UBERON:0005743!2.04e-35!73;UBERON:0004121!1.80e-32!102;UBERON:0000924!1.80e-32!102;UBERON:0006601!1.80e-32!102;UBERON:0001049!1.36e-23!52;UBERON:0005068!1.36e-23!52;UBERON:0006241!1.36e-23!52;UBERON:0007135!1.36e-23!52;UBERON:0000955!1.66e-22!50;UBERON:0006238!1.66e-22!50;UBERON:0002346!7.82e-22!71;UBERON:0003075!7.82e-22!71;UBERON:0007284!7.82e-22!71;UBERON:0002616!9.83e-22!49;UBERON:0000033!5.33e-20!63;UBERON:0003080!2.28e-19!40;UBERON:0002780!6.52e-19!39;UBERON:0001890!6.52e-19!39;UBERON:0006240!6.52e-19!39;UBERON:0002020!4.54e-18!34;UBERON:0003056!2.87e-17!49;UBERON:0002791!3.26e-15!29;UBERON:0003528!3.26e-15!29;UBERON:0001893!3.26e-15!29;UBERON:0000956!7.61e-11!21;UBERON:0001869!7.61e-11!21;UBERON:0000203!7.61e-11!21;UBERON:0002619!1.50e-08!17;UBERON:0007811!1.92e-08!86;UBERON:0000010!2.11e-08!11;UBERON:0002410!3.01e-08!9;UBERON:0002021!3.62e-08!10;UBERON:0000411!3.62e-08!10;UBERON:0001950!3.62e-08!10;UBERON:0000153!5.18e-08!94|ontology_enrichment_uberon_v019_2=UBERON:0001017,1.64e-53,73;UBERON:0001016,1.45e-51,75;UBERON:0004121,1.60e-45,95;UBERON:0000924,1.60e-45,95;UBERON:0006601,1.60e-45,95;UBERON:0000073,3.69e-39,54;UBERON:0001049,3.82e-37,52;UBERON:0005068,3.82e-37,52;UBERON:0006241,3.82e-37,52;UBERON:0007135,3.82e-37,52;UBERON:0010371,1.07e-35,73;UBERON:0002346,8.76e-35,64;UBERON:0003075,8.76e-35,64;UBERON:0007284,8.76e-35,64;UBERON:0000955,1.57e-32,47;UBERON:0006238,1.57e-32,47;UBERON:0002616,2.89e-31,46;UBERON:0003080,7.60e-31,40;UBERON:0002020,1.54e-30,34;UBERON:0002780,4.44e-30,39;UBERON:0001890,4.44e-30,39;UBERON:0006240,4.44e-30,39;UBERON:0003528,1.04e-25,29;UBERON:0002791,1.04e-25,29;UBERON:0001893,1.04e-25,29;UBERON:0003056,2.36e-24,49;UBERON:0010314,2.21e-19,92;UBERON:0000956,2.50e-18,21;UBERON:0001869,2.50e-18,21;UBERON:0000203,2.50e-18,21;UBERON:0002619,1.90e-14,17;UBERON:0002410,9.07e-13,9;UBERON:0002021,1.23e-12,10;UBERON:0000411,1.23e-12,10;UBERON:0001950,1.23e-12,10;UBERON:0000010,6.40e-10,11;UBERON:0000025,2.56e-09,114;UBERON:0011216,1.61e-08,194;UBERON:0002420,1.93e-08,8;UBERON:0007245,1.93e-08,8;UBERON:0010009,1.93e-08,8;UBERON:0010011,1.93e-08,8;UBERON:0000454,1.93e-08,8;UBERON:0004111,6.74e-08,122;UBERON:0003076,9.02e-07,12;UBERON:0003057,9.02e-07,12|phase1_expression=0.640595388419176,0,0,0,0,0,0.233612640595526,0,0,0,0,0,0,0,0,0,0,0,0,0,1.44573593256819,0,0,0.159992422793407,0,0.57423196411502,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.782391344348039,0,0,0,0.55994568650145,0,0,0,0,0,0.286533439938757,0,0.809265843438391,1.5869729378161,1.26766280701236,1.35537812827653,0,0,0,0,1.49800055259202,4.61061966385865,4.56234294157302,5.40023753326763,5.25812403378455,6.85562362569129,5.96345060569357,6.36952155917761,6.99671938433125,9.19218786610021,3.30347642998166,4.34136949489638,3.5329502648936,5.01167893374737,2.28719109006024,5.2091337055676,3.90856198601933,2.25105044012672,3.97275444219706,4.12480019663135,4.55589378557129,3.16879057903011,0.681535739998656,0.982430281388212,0.289864488701678,0,0.679971333707751,0,0,0,0,0,0,0,0.563373679106722,0,0,0,0,0,0,0.11418387971906,0,0.29688427812965,0.346970653532272,0,0.230615497256059,0.150722640552623,0.117588707135705,0,0,0.144599356919912,0,0,0,0,0,1.17112318804619,1.04723353406728,0,0,0,0,2.24685959107234,16.4700217014706,6.03140890141749,9.56033761057521,7.16003280524926,4.57133698031032,3.73154905055843,0.203678727700633,0,0,0,0,0.229902104433473,0,0.452114453507145,0.884474488967262,0.768682321709099,1.78033276663485,0.258703370739016,0,0,0.175951124163949,1.09597866213787,1.11218899690239,0.348252166522167,0.205782136407943,1.19420560091096,0,0,0,0,0,0,0,0.196764231747404,0.154267112887378,0,0.268273401399619,0,0,0,0.0810688095458557,0,0.439100230582101,0,2.3131894342054,2.77842453424068,0,0.264450566663544,0,0.464473343720877,0.257734922644187,0.403367049246685,0.22237804384487,0.190225626112559,0,0,0.251335208800269,0,0,0,0,0.199141273254367,0,0.114248512609729,0,0,0,0.210407459670956,0,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| ||
|EntrezGene=14807 | |||
|HGNC= | |||
|MCL_coexpression_id=593 | |||
|UniProt=B1AS29 | |||
|association_with_transcript=0bp_to_ENSMUST00000030676_5end | |||
|description=CAGE_peak_3_at_Grik3_5end | |||
|id=chr4:125167932..125167948,+ | |||
|ontology_enrichment_celltype=CL:0000540!7.89e-20!33;CL:0000047!7.89e-20!33;CL:0000031!7.89e-20!33;CL:0000404!7.89e-20!33;CL:0000221!1.92e-17!44;CL:0000133!1.92e-17!44;CL:0002319!2.28e-17!43;CL:0000393!1.11e-14!39;CL:0000211!1.11e-14!39;CL:0000117!8.45e-13!23;CL:0000337!8.45e-13!23;CL:0000055!8.91e-13!50;CL:0000107!3.01e-08!9 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,3.08e-29,33;CL:0000047,3.08e-29,33;CL:0000031,3.08e-29,33;CL:0000404,3.08e-29,33;CL:0000393,4.48e-23,39;CL:0000211,4.48e-23,39;CL:0002319,5.36e-23,43;CL:0000221,3.21e-22,44;CL:0000133,3.21e-22,44;CL:0000117,6.42e-19,23;CL:0000337,6.42e-19,23;CL:0000107,9.07e-13,9;CL:0002321,4.48e-10,70;CL:0002609,2.86e-07,6 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!5.09e-36!75;UBERON:0001016!5.09e-36!75;UBERON:0001017!2.04e-35!73;UBERON:0005743!2.04e-35!73;UBERON:0004121!1.80e-32!102;UBERON:0000924!1.80e-32!102;UBERON:0006601!1.80e-32!102;UBERON:0001049!1.36e-23!52;UBERON:0005068!1.36e-23!52;UBERON:0006241!1.36e-23!52;UBERON:0007135!1.36e-23!52;UBERON:0000955!1.66e-22!50;UBERON:0006238!1.66e-22!50;UBERON:0002346!7.82e-22!71;UBERON:0003075!7.82e-22!71;UBERON:0007284!7.82e-22!71;UBERON:0002616!9.83e-22!49;UBERON:0000033!5.33e-20!63;UBERON:0003080!2.28e-19!40;UBERON:0002780!6.52e-19!39;UBERON:0001890!6.52e-19!39;UBERON:0006240!6.52e-19!39;UBERON:0002020!4.54e-18!34;UBERON:0003056!2.87e-17!49;UBERON:0002791!3.26e-15!29;UBERON:0003528!3.26e-15!29;UBERON:0001893!3.26e-15!29;UBERON:0000956!7.61e-11!21;UBERON:0001869!7.61e-11!21;UBERON:0000203!7.61e-11!21;UBERON:0002619!1.50e-08!17;UBERON:0007811!1.92e-08!86;UBERON:0000010!2.11e-08!11;UBERON:0002410!3.01e-08!9;UBERON:0002021!3.62e-08!10;UBERON:0000411!3.62e-08!10;UBERON:0001950!3.62e-08!10;UBERON:0000153!5.18e-08!94 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,1.64e-53,73;UBERON:0001016,1.45e-51,75;UBERON:0004121,1.60e-45,95;UBERON:0000924,1.60e-45,95;UBERON:0006601,1.60e-45,95;UBERON:0000073,3.69e-39,54;UBERON:0001049,3.82e-37,52;UBERON:0005068,3.82e-37,52;UBERON:0006241,3.82e-37,52;UBERON:0007135,3.82e-37,52;UBERON:0010371,1.07e-35,73;UBERON:0002346,8.76e-35,64;UBERON:0003075,8.76e-35,64;UBERON:0007284,8.76e-35,64;UBERON:0000955,1.57e-32,47;UBERON:0006238,1.57e-32,47;UBERON:0002616,2.89e-31,46;UBERON:0003080,7.60e-31,40;UBERON:0002020,1.54e-30,34;UBERON:0002780,4.44e-30,39;UBERON:0001890,4.44e-30,39;UBERON:0006240,4.44e-30,39;UBERON:0003528,1.04e-25,29;UBERON:0002791,1.04e-25,29;UBERON:0001893,1.04e-25,29;UBERON:0003056,2.36e-24,49;UBERON:0010314,2.21e-19,92;UBERON:0000956,2.50e-18,21;UBERON:0001869,2.50e-18,21;UBERON:0000203,2.50e-18,21;UBERON:0002619,1.90e-14,17;UBERON:0002410,9.07e-13,9;UBERON:0002021,1.23e-12,10;UBERON:0000411,1.23e-12,10;UBERON:0001950,1.23e-12,10;UBERON:0000010,6.40e-10,11;UBERON:0000025,2.56e-09,114;UBERON:0011216,1.61e-08,194;UBERON:0002420,1.93e-08,8;UBERON:0007245,1.93e-08,8;UBERON:0010009,1.93e-08,8;UBERON:0010011,1.93e-08,8;UBERON:0000454,1.93e-08,8;UBERON:0004111,6.74e-08,122;UBERON:0003076,9.02e-07,12;UBERON:0003057,9.02e-07,12 | |||
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|short_description=p3@Grik3 | |||
}} |
Revision as of 03:45, 14 September 2013
Short description: | p3@Grik3 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Grik3_5end |
Coexpression cluster: | MCL_coexpression_mm9:593 |
Association with transcript: | 0bp_to_ENSMUST00000030676_5end |
EntrezGene: | Grik3 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 3.08e-29 | 33 |
neuronal stem cell | 3.08e-29 | 33 |
neuroblast | 3.08e-29 | 33 |
electrically signaling cell | 3.08e-29 | 33 |
electrically responsive cell | 4.48e-23 | 39 |
electrically active cell | 4.48e-23 | 39 |
neural cell | 5.36e-23 | 43 |
ectodermal cell | 3.21e-22 | 44 |
neurectodermal cell | 3.21e-22 | 44 |
CNS neuron (sensu Vertebrata) | 6.42e-19 | 23 |
neuroblast (sensu Vertebrata) | 6.42e-19 | 23 |
autonomic neuron | 9.07e-13 | 9 |
embryonic cell | 4.48e-10 | 70 |
neuron of cerebral cortex | 2.86e-07 | 6 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.