FFCP PHASE1:Mm9::chr9:40153880..40153922,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=235283|HGNC=|MCL_coexpression_id=1|UniProt=Q80TI0|association_with_transcript=-5bp_to_ENSMUST00000121357,uc009ozo.1_5end|description=CAGE_peak_8_at_Gramd1b_5end|id=chr9:40153880..40153922,-|ontology_enrichment_celltype=CL:0000117!7.88e-14!23;CL:0000337!7.88e-14!23;CL:0000540!6.43e-09!33;CL:0000047!6.43e-09!33;CL:0000031!6.43e-09!33;CL:0000404!6.43e-09!33;CL:0000221!1.43e-07!44;CL:0000133!1.43e-07!44;CL:0002319!2.28e-07!43|ontology_enrichment_celltype_v019_2=CL:0000117,2.55e-21,23;CL:0000337,2.55e-21,23;CL:0000540,1.58e-12,33;CL:0000047,1.58e-12,33;CL:0000031,1.58e-12,33;CL:0000404,1.58e-12,33;CL:0000393,1.67e-09,39;CL:0000211,1.67e-09,39;CL:0002319,7.32e-09,43;CL:0000221,1.68e-08,44;CL:0000133,1.68e-08,44|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000033!1.82e-26!63;UBERON:0001049!2.19e-25!52;UBERON:0005068!2.19e-25!52;UBERON:0006241!2.19e-25!52;UBERON:0007135!2.19e-25!52;UBERON:0001017!9.29e-25!73;UBERON:0005743!9.29e-25!73;UBERON:0002346!1.33e-24!71;UBERON:0003075!1.33e-24!71;UBERON:0007284!1.33e-24!71;UBERON:0004121!1.59e-24!102;UBERON:0000924!1.59e-24!102;UBERON:0006601!1.59e-24!102;UBERON:0000955!3.67e-24!50;UBERON:0006238!3.67e-24!50;UBERON:0000073!1.07e-23!75;UBERON:0001016!1.07e-23!75;UBERON:0002616!2.29e-23!49;UBERON:0003056!3.74e-22!49;UBERON:0002020!5.74e-20!34;UBERON:0003080!1.59e-19!40;UBERON:0002780!7.55e-19!39;UBERON:0001890!7.55e-19!39;UBERON:0006240!7.55e-19!39;UBERON:0007811!8.38e-19!86;UBERON:0002791!6.62e-17!29;UBERON:0003528!6.62e-17!29;UBERON:0001893!6.62e-17!29;UBERON:0000153!1.48e-16!94;UBERON:0000956!3.60e-12!21;UBERON:0001869!3.60e-12!21;UBERON:0000203!3.60e-12!21;UBERON:0002619!4.58e-10!17;UBERON:0002021!7.96e-09!10;UBERON:0000411!7.96e-09!10;UBERON:0001950!7.96e-09!10|ontology_enrichment_uberon_v019_2=UBERON:0000073,4.89e-41,54;UBERON:0001049,5.22e-39,52;UBERON:0005068,5.22e-39,52;UBERON:0006241,5.22e-39,52;UBERON:0007135,5.22e-39,52;UBERON:0002346,8.99e-38,64;UBERON:0003075,8.99e-38,64;UBERON:0007284,8.99e-38,64;UBERON:0001017,2.30e-34,73;UBERON:0000955,4.60e-34,47;UBERON:0006238,4.60e-34,47;UBERON:0001016,5.74e-33,75;UBERON:0002616,8.23e-33,46;UBERON:0010371,2.91e-32,73;UBERON:0002020,6.31e-31,34;UBERON:0004121,2.63e-30,95;UBERON:0000924,2.63e-30,95;UBERON:0006601,2.63e-30,95;UBERON:0003056,2.87e-30,49;UBERON:0003080,5.36e-29,40;UBERON:0002780,6.47e-28,39;UBERON:0001890,6.47e-28,39;UBERON:0006240,6.47e-28,39;UBERON:0003528,5.54e-26,29;UBERON:0002791,5.54e-26,29;UBERON:0001893,5.54e-26,29;UBERON:0010314,4.85e-21,92;UBERON:0000956,2.38e-18,21;UBERON:0001869,2.38e-18,21;UBERON:0000203,2.38e-18,21;UBERON:0002619,5.83e-15,17;UBERON:0002021,2.95e-13,10;UBERON:0000411,2.95e-13,10;UBERON:0001950,2.95e-13,10;UBERON:0003076,5.83e-10,12;UBERON:0003057,5.83e-10,12;UBERON:0000025,1.25e-09,114;UBERON:0002420,1.08e-08,8;UBERON:0007245,1.08e-08,8;UBERON:0010009,1.08e-08,8;UBERON:0010011,1.08e-08,8;UBERON:0000454,1.08e-08,8;UBERON:0004111,3.90e-08,122;UBERON:0002240,7.14e-07,6;UBERON:0005174,7.14e-07,6;UBERON:0001137,7.14e-07,6|phase1_expression=0.80074423552397,0,0,0,0,0,0,0,0.281577444303333,0,0.171217968225505,0,0,0.0874204024189974,0,0,0,0,0,0,1.9559956734746,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.125896817975577,0,0,0,2.18025156380447,0.219686182734472,0,0.55994568650145,0,0,0,0,0,0,0,5.66486090406874,6.87688273053643,6.33831403506179,0.677689064138264,0,0,0,0,0.299600110518405,0.768436610643109,3.83651565541367,2.97013064329719,3.57552434297349,3.42781181284564,4.63823935998388,3.91970557487853,4.60058260887535,5.51531271966013,3.30347642998166,5.87361755191863,5.68344173048101,3.69281605644543,6.86157327018072,5.73004707612436,3.62937898701795,3.37657566019008,3.0559649555362,7.36571463684169,6.12198227436143,6.33758115806022,0,0.0755715601067855,0,0,0,0,0,0,0.280888840263504,0,0,0,0.704217098883403,0,0,0,0,0,0,0.22836775943812,0.776813650941515,0.593768556259299,0.520455980298408,0.304465478312141,0,0.150722640552623,0.117588707135705,0.251333182659351,0,0.722996784599558,0,0.647067399789637,0.220841518460394,0,0,8.19786231632332,8.16842156572475,0,0.11981512450592,0,0.254140454146129,7.04016005202667,12.8100168789215,10.6806199295935,7.47444576826789,8.69432554923124,6.85700547046548,10.3834408363365,0.101839363850316,0.497627882440372,0.252722758433675,2.52530227063769,0.130120442962704,0.459804208866946,1.26043490863744,0.90422890701429,1.56483948048054,2.43416068541215,2.06143794031403,2.32833033665114,0,0,0.175951124163949,0,0,0.696504333044333,0,0.59710280045548,0,0,0,0,0.234526059981096,0.180062061461015,0,0,0,0,0,0.233530684734339,0.16455984991348,0.32833492815819,0,0.146199987425332,0.219550115291051,0,7.57043814830858,5.55684906848136,0,0,0,0,0.257734922644187,0.201683524623343,0,0.190225626112559,0,0,0,0.198956472041151,0.19496408711912,0,0,0,0,0,0,0,0,0.140271639780637,0.126473074248515,0,0,0.123397163921801,0,0.166845105716094,0,0,0,0.241177159752417,0,0,0,0,0,0,0,0,0,0,0,0,0.162964976442026,0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| ||
|EntrezGene=235283 | |||
|HGNC= | |||
|MCL_coexpression_id=1 | |||
|UniProt=Q80TI0 | |||
|association_with_transcript=-5bp_to_ENSMUST00000121357,uc009ozo.1_5end | |||
|description=CAGE_peak_8_at_Gramd1b_5end | |||
|id=chr9:40153880..40153922,- | |||
|ontology_enrichment_celltype=CL:0000117!7.88e-14!23;CL:0000337!7.88e-14!23;CL:0000540!6.43e-09!33;CL:0000047!6.43e-09!33;CL:0000031!6.43e-09!33;CL:0000404!6.43e-09!33;CL:0000221!1.43e-07!44;CL:0000133!1.43e-07!44;CL:0002319!2.28e-07!43 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,2.55e-21,23;CL:0000337,2.55e-21,23;CL:0000540,1.58e-12,33;CL:0000047,1.58e-12,33;CL:0000031,1.58e-12,33;CL:0000404,1.58e-12,33;CL:0000393,1.67e-09,39;CL:0000211,1.67e-09,39;CL:0002319,7.32e-09,43;CL:0000221,1.68e-08,44;CL:0000133,1.68e-08,44 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000033!1.82e-26!63;UBERON:0001049!2.19e-25!52;UBERON:0005068!2.19e-25!52;UBERON:0006241!2.19e-25!52;UBERON:0007135!2.19e-25!52;UBERON:0001017!9.29e-25!73;UBERON:0005743!9.29e-25!73;UBERON:0002346!1.33e-24!71;UBERON:0003075!1.33e-24!71;UBERON:0007284!1.33e-24!71;UBERON:0004121!1.59e-24!102;UBERON:0000924!1.59e-24!102;UBERON:0006601!1.59e-24!102;UBERON:0000955!3.67e-24!50;UBERON:0006238!3.67e-24!50;UBERON:0000073!1.07e-23!75;UBERON:0001016!1.07e-23!75;UBERON:0002616!2.29e-23!49;UBERON:0003056!3.74e-22!49;UBERON:0002020!5.74e-20!34;UBERON:0003080!1.59e-19!40;UBERON:0002780!7.55e-19!39;UBERON:0001890!7.55e-19!39;UBERON:0006240!7.55e-19!39;UBERON:0007811!8.38e-19!86;UBERON:0002791!6.62e-17!29;UBERON:0003528!6.62e-17!29;UBERON:0001893!6.62e-17!29;UBERON:0000153!1.48e-16!94;UBERON:0000956!3.60e-12!21;UBERON:0001869!3.60e-12!21;UBERON:0000203!3.60e-12!21;UBERON:0002619!4.58e-10!17;UBERON:0002021!7.96e-09!10;UBERON:0000411!7.96e-09!10;UBERON:0001950!7.96e-09!10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000073,4.89e-41,54;UBERON:0001049,5.22e-39,52;UBERON:0005068,5.22e-39,52;UBERON:0006241,5.22e-39,52;UBERON:0007135,5.22e-39,52;UBERON:0002346,8.99e-38,64;UBERON:0003075,8.99e-38,64;UBERON:0007284,8.99e-38,64;UBERON:0001017,2.30e-34,73;UBERON:0000955,4.60e-34,47;UBERON:0006238,4.60e-34,47;UBERON:0001016,5.74e-33,75;UBERON:0002616,8.23e-33,46;UBERON:0010371,2.91e-32,73;UBERON:0002020,6.31e-31,34;UBERON:0004121,2.63e-30,95;UBERON:0000924,2.63e-30,95;UBERON:0006601,2.63e-30,95;UBERON:0003056,2.87e-30,49;UBERON:0003080,5.36e-29,40;UBERON:0002780,6.47e-28,39;UBERON:0001890,6.47e-28,39;UBERON:0006240,6.47e-28,39;UBERON:0003528,5.54e-26,29;UBERON:0002791,5.54e-26,29;UBERON:0001893,5.54e-26,29;UBERON:0010314,4.85e-21,92;UBERON:0000956,2.38e-18,21;UBERON:0001869,2.38e-18,21;UBERON:0000203,2.38e-18,21;UBERON:0002619,5.83e-15,17;UBERON:0002021,2.95e-13,10;UBERON:0000411,2.95e-13,10;UBERON:0001950,2.95e-13,10;UBERON:0003076,5.83e-10,12;UBERON:0003057,5.83e-10,12;UBERON:0000025,1.25e-09,114;UBERON:0002420,1.08e-08,8;UBERON:0007245,1.08e-08,8;UBERON:0010009,1.08e-08,8;UBERON:0010011,1.08e-08,8;UBERON:0000454,1.08e-08,8;UBERON:0004111,3.90e-08,122;UBERON:0002240,7.14e-07,6;UBERON:0005174,7.14e-07,6;UBERON:0001137,7.14e-07,6 | |||
|phase1_expression=0.80074423552397,0,0,0,0,0,0,0,0.281577444303333,0,0.171217968225505,0,0,0.0874204024189974,0,0,0,0,0,0,1.9559956734746,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.125896817975577,0,0,0,2.18025156380447,0.219686182734472,0,0.55994568650145,0,0,0,0,0,0,0,5.66486090406874,6.87688273053643,6.33831403506179,0.677689064138264,0,0,0,0,0.299600110518405,0.768436610643109,3.83651565541367,2.97013064329719,3.57552434297349,3.42781181284564,4.63823935998388,3.91970557487853,4.60058260887535,5.51531271966013,3.30347642998166,5.87361755191863,5.68344173048101,3.69281605644543,6.86157327018072,5.73004707612436,3.62937898701795,3.37657566019008,3.0559649555362,7.36571463684169,6.12198227436143,6.33758115806022,0,0.0755715601067855,0,0,0,0,0,0,0.280888840263504,0,0,0,0.704217098883403,0,0,0,0,0,0,0.22836775943812,0.776813650941515,0.593768556259299,0.520455980298408,0.304465478312141,0,0.150722640552623,0.117588707135705,0.251333182659351,0,0.722996784599558,0,0.647067399789637,0.220841518460394,0,0,8.19786231632332,8.16842156572475,0,0.11981512450592,0,0.254140454146129,7.04016005202667,12.8100168789215,10.6806199295935,7.47444576826789,8.69432554923124,6.85700547046548,10.3834408363365,0.101839363850316,0.497627882440372,0.252722758433675,2.52530227063769,0.130120442962704,0.459804208866946,1.26043490863744,0.90422890701429,1.56483948048054,2.43416068541215,2.06143794031403,2.32833033665114,0,0,0.175951124163949,0,0,0.696504333044333,0,0.59710280045548,0,0,0,0,0.234526059981096,0.180062061461015,0,0,0,0,0,0.233530684734339,0.16455984991348,0.32833492815819,0,0.146199987425332,0.219550115291051,0,7.57043814830858,5.55684906848136,0,0,0,0,0.257734922644187,0.201683524623343,0,0.190225626112559,0,0,0,0.198956472041151,0.19496408711912,0,0,0,0,0,0,0,0,0.140271639780637,0.126473074248515,0,0,0.123397163921801,0,0.166845105716094,0,0,0,0.241177159752417,0,0,0,0,0,0,0,0,0,0,0,0,0.162964976442026,0,0.469380496577004,0.167506257441816,0,0,0,0,0.159454768657487,0,0,0,0,0,1.47529281905711,0.551873492609465,4.49541651965817,3.28192722458169,0,0,0,0,0,0.238968797952552,0.445597348164788,0,0,0,0.395287777946524,11.8888887076069,0.425820255624806,0.178065603667255,0.162886959353576,0.494910368917606,0,1.21390318077491,0,0.188605079755898,0,0.614870295887855,0,0,0.356497378384721,0.316036757935816,0,0,7.14923172082955,0,0.258717367565509,0.214337035031592,1.06404140185364,1.07021290561242,1.64549020602121,1.8267896946876,0.23467170806371,0,0.220528398054962,0,0.161464426695906,0.0603129249281559,0,0.164140899745061,0,4.82105785227325,0,0,0,0.188368457004691,0,0,0.339956859987711,0,0.138199973804424,0,0.158167996790568,0.609958401380546,0.324016022465404,0.209088296014469,0.436725127492355,0.134864346384821,0.0826534557253359,0,0.129614973291793,0,0,0.299033092087958,0,0,0.129159823477731,0,0,0.13020438484395,0,0,0,0.316011120628178,0.810900861160657,0.513554785824136,0.129920822977795,0.358053391334963,0,0.120195449519969,0.147689527174577,0.100966449948148,0.0762068066549998,0.100826185136841,0,0.0962118416403295,0,0.226730383615211,0,0,0,0,0,0.36630324853453,0,0,13.5540442228096,10.5874804396651,15.4681788628637,7.73339320546594,9.59115527678899,10.5755145634558,12.1504050041725,13.9599572999508,12.2348450425735,13.4617681055473,0.103787347584177,0.399024873401031,0.512200817262403,2.43106717068294,1.46729213839588,1.2869045591501,1.11123363900808,0.824140228955577,0.320919209591815,1.76888048234658,1.2673964994512,0.943131706930381,1.12369808963859,1.98477972455095,2.46972516509137,0.952587382566147,1.62238056322798,1.54327376370964,1.23625770240992,2.06078488188156,1.02860775715625,1.95223386775271,1.43061713968393,2.90692833264657,1.78807822789128,1.69229215783353,1.09756783723664,0.789209134313529,1.22223702461276,3.92799590160417,1.89816028998679,1.67457620038458,0.818462086339379,1.70430525304563,1.15743966588685,3.99696924700713,1.87145286756327,0.644613162144895,0.191288332068843,0.441182838239031,0 | |||
|short_description=p8@Gramd1b | |||
}} |
Revision as of 17:46, 14 September 2013
Short description: | p8@Gramd1b |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_8_at_Gramd1b_5end |
Coexpression cluster: | MCL_coexpression_mm9:1 |
Association with transcript: | -5bp_to_ENSMUST00000121357, uc009ozo.1_5end |
EntrezGene: | Gramd1b |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 2.55e-21 | 23 |
neuroblast (sensu Vertebrata) | 2.55e-21 | 23 |
neuron | 1.58e-12 | 33 |
neuronal stem cell | 1.58e-12 | 33 |
neuroblast | 1.58e-12 | 33 |
electrically signaling cell | 1.58e-12 | 33 |
electrically responsive cell | 1.67e-09 | 39 |
electrically active cell | 1.67e-09 | 39 |
neural cell | 7.32e-09 | 43 |
ectodermal cell | 1.68e-08 | 44 |
neurectodermal cell | 1.68e-08 | 44 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.