FFCP PHASE1:Hg19::chr17:8055747..8055758,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=5187 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=8845 | |||
|TSSclassifier=strong | |||
|UniProt=O15534 | |||
|association_with_transcript=0bp_to_ENST00000317276,NM_002616,uc002gkd.2_5end | |||
|description=CAGE_peak_3_at_PER1_5end | |||
|id=chr17:8055747..8055758,- | |||
|ontology_enrichment_celltype=CL:0002057!3.95e-09!42;CL:0000860!3.89e-08!45 | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!7.78e-24!115;UBERON:0001049!6.29e-15!57;UBERON:0005068!6.29e-15!57;UBERON:0006241!6.29e-15!57;UBERON:0007135!6.29e-15!57;UBERON:0002346!8.33e-14!90;UBERON:0003075!3.39e-13!86;UBERON:0007284!3.39e-13!86;UBERON:0002616!4.82e-12!59;UBERON:0001017!8.39e-11!82;UBERON:0000955!3.02e-10!69;UBERON:0006238!3.02e-10!69;UBERON:0005743!3.25e-10!86;UBERON:0000073!4.51e-10!94;UBERON:0001016!4.51e-10!94;UBERON:0003080!9.58e-10!42;UBERON:0002780!3.26e-09!41;UBERON:0001890!3.26e-09!41;UBERON:0006240!3.26e-09!41;UBERON:0003056!8.49e-08!61;UBERON:0000479!1.41e-07!787;UBERON:0002020!3.66e-07!34;UBERON:0003528!3.66e-07!34;UBERON:0000153!8.59e-07!129;UBERON:0007811!8.59e-07!129;UBERON:0003076!8.77e-07!15;UBERON:0003057!8.77e-07!15 | |||
|ontology_enrichment_uberon_v019=UBERON:0007023;4.06e-08;114 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,2.75e-29,114;UBERON:0001049,5.32e-13,56;UBERON:0005068,5.32e-13,56;UBERON:0006241,5.32e-13,56;UBERON:0007135,5.32e-13,56;UBERON:0002346,1.10e-12,86;UBERON:0003075,9.14e-12,82;UBERON:0007284,9.14e-12,82;UBERON:0000073,5.30e-11,53;UBERON:0002616,5.30e-11,53;UBERON:0010371,3.09e-09,104;UBERON:0001017,3.24e-09,81;UBERON:0001016,2.53e-08,89;UBERON:0000955,3.74e-08,68;UBERON:0006238,3.74e-08,68;UBERON:0002780,5.29e-08,41;UBERON:0001890,5.29e-08,41;UBERON:0003080,5.29e-08,41;UBERON:0006240,5.29e-08,41;UBERON:0010314,6.10e-08,132;UBERON:0000479,6.89e-08,773;UBERON:0002050,8.15e-07,564;UBERON:0003076,8.45e-07,15;UBERON:0003057,8.45e-07,15;UBERON:0000125,8.57e-07,9;UBERON:0002308,8.57e-07,9;UBERON:0000923,9.71e-07,560;UBERON:0010316,9.71e-07,560;UBERON:0005291,9.71e-07,560;UBERON:0006598,9.71e-07,560;UBERON:0010317,9.71e-07,560;UBERON:0002532,9.71e-07,560 | |||
|phase1_expression=0.908391896352783,0.214100523890983,0.845726424575827,1.0007329835313,1.34088328328186,0,0,0,0,0.737201809504527,2.09340350391728,1.09220686065086,0.263766978228454,0.618831764800233,0.994192127183747,0.672325146451775,0,0,0.487932798790507,0.738726348460727,2.24400760368678,0.940364164434263,0,0.547497700291537,0.753255837568817,1.37544130346312,0.821005894499457,0.944529375764151,1.57345710739562,1.53531759238885,1.70297735647684,0.919421224478927,1.204823675113,1.10926203050036,0.542270404062111,0.853015394924529,1.17440175733939,1.10799081706375,2.60707781711184,1.51907609501096,0.447830948479849,0,0.257575567634187,0.726991193897824,1.51150377475524,1.21292030593908,0.929716147622738,0.822335776043652,2.47765096716083,2.3015391385772,0.512321413058201,1.89185783910868,3.7922024881028,1.93645405075148,1.35426486594342,3.01187743268168,1.09162460023138,0.898893937780338,2.44867113896722,0.641858054152187,1.27867425159808,1.64925650093358,0.797854630486527,0.426224750532694,0.870627715885752,0,0.622822248995575,1.7587406567972,0.521482918420201,2.17188844705117,0.605399502633369,1.47311054395026,0.632924774881769,0.633765858935825,1.70083439972035,1.04829322754188,2.13424399178341,1.20141514273205,1.76798145366788,0.570025487482497,0.79566670879636,0.182664153764634,0,0,0,0,0,0,0,0,0,0.587237189370939,1.14681968437569,0,2.80254281490768,0.263384084775077,0.393419540227666,0,4.11202997999018,0.167186495390678,0.32592226663359,0,1.94826728407911,0.222820913770347,0,0,0.812411591295047,0.512365278902701,0.130059347559878,0,0,0,0.296573126324121,0.267540828089713,1.04535523804977,0.226618685395132,0.766440987203842,0.68725489096526,0.759059076058509,0.318565414324097,0,0,0,0,0,0.236777252044017,0,0.80642697289893,5.88368430723716,1.15859523106239,0,0,0.511450247374121,0,0,0,0,0,0.756278537312543,0.665188192387692,0.614843499851882,1.96468613246569,0.728590576585084,0.741568885568859,0,0,0.132957960518865,0,0,0,0.198762407366705,0,0.347140501607594,0.56530794192401,0.419499436209906,0.550236083880135,0.208994966536811,0.516833518338658,0,0,0.402829317109147,0,1.22031028774085,0,0,0.446498641420399,0.898117490504679,0.337834441449967,3.06633274931766,0,0.366403487860815,1.31780417436063,0,0.872188104285069,0,0.25326102332916,0.132409180813219,0.573673241497627,0,1.12135520028461,0,0.49333509683432,0,1.0776853765575,0.326923806226917,0.605429710579726,1.15235184896,1.17160715916898,0,0,0.149448680551801,1.52664848236894,0.485618833104395,0.702254033511242,0.408308342509787,0.368502951935304,0.413303124703062,0,0,0,1.43723628363248,0,0.625592599359821,0,0.438977620880838,0.612975591598039,0.600952235626387,0.453728732640084,0.717558542755448,0,0.211931901159562,0.600182192168805,0.309157587715317,1.8034837803194,0,0.337552664482532,0.194874010322397,0.504867548488229,0.184099797284599,0.161646056818812,0.710019185033229,0.403008392910561,0.339121184620975,0.57978255948989,0,0.860413786167011,0.121973706129595,0.132529768321485,0,0.10366105501537,0.252320850875628,0,1.56449532329816,0,0,0,0.721879481669586,0,0,0,0.110293972732394,0,0,0,0,0,0,2.80483547606892,0,1.47008711385542,0,0,1.18157981336281,1.32438929824395,0.122988438543114,0.343135620597051,0.548751427043128,1.1240175325762,0.100528972411631,0.185176890317059,0,4.15973914111831,0,0.231860809950154,0.234817388471643,0.721832238805369,0,0,0,0,0,0,0.743155811443641,0,0.503946384596579,0,0.358234090811393,0.581267877027924,0,0,0,7.25648404392702,8.79131715843465,2.39860623510122,0.190493682876507,1.52795370223311,0,0,0.616964956219941,0.300343057843917,0.285826432630578,1.00917975910825,1.74384027533312,0.7333828582095,0,3.57656445851882,1.690605505112,0.26593811658487,0,0.257207374262142,1.41849132023278,0.266422179016099,0.857867961948885,2.17048642156577,0.823240336780769,0.977208552881205,0,1.58390374586686,0.301439377059586,0,0.299918973546171,0,0,2.10833939483032,0,0,0,0.144781306667579,0.821905290201534,0.358121926479791,0.448340575974109,0.394061520403854,1.50939302401662,1.92514554419623,0.508189248444927,0,0,0.670065061337395,1.27587750330633,1.49801404789436,2.99161459204025,0.828831026872071,0.49076596687656,0,0.542530047399471,0,0.356857977594324,0,0.35142424497814,0.902838299183157,2.27407504055985,1.03473071292505,0.664225598535437,2.02806085395873,0.0868836144680828,0.979005787313703,2.05886054286514,1.03384013061444,1.72571360654893,2.98837161849644,3.33440328590885,0,3.0239029332968,0.744323423456331,0.920771839728375,0.280660094433074,0,0,0.160853921143607,0,0.308419387605311,0.177561725313127,0.0821271560138091,0,0.116210378459959,0,0.40101294060657,0,0,0,0.393373244878272,0.451199612907412,0.308061348417659,0.784349769176855,0,0.105551628892876,3.4120015221269,0.340187410553031,0.215915916102139,0,0,1.50506932156456,0,0.831076008928724,0.223874754722178,0,0.261435451024901,0,0,0.650756789328606,0.618246069886334,0.915694648183434,0.495056999523528,0.574265537996172,1.95018073810956,0,0.193341436584244,1.84858340537573,1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| |||
|short_description=p3@PER1 | |||
}} |
Revision as of 13:46, 20 January 2014
Short description: | p3@PER1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_PER1_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000317276, NM_002616, uc002gkd.2_5end |
EntrezGene: | PER1 |
HGNC: | 8845 |
UniProt: | O15534 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
adult organism | 2.75e-29 | 114 |
neural tube | 5.32e-13 | 56 |
neural rod | 5.32e-13 | 56 |
future spinal cord | 5.32e-13 | 56 |
neural keel | 5.32e-13 | 56 |
neurectoderm | 1.10e-12 | 86 |
neural plate | 9.14e-12 | 82 |
presumptive neural plate | 9.14e-12 | 82 |
regional part of nervous system | 5.30e-11 | 53 |
regional part of brain | 5.30e-11 | 53 |
ecto-epithelium | 3.09e-09 | 104 |
central nervous system | 3.24e-09 | 81 |
nervous system | 2.53e-08 | 89 |
brain | 3.74e-08 | 68 |
future brain | 3.74e-08 | 68 |
regional part of forebrain | 5.29e-08 | 41 |
forebrain | 5.29e-08 | 41 |
anterior neural tube | 5.29e-08 | 41 |
future forebrain | 5.29e-08 | 41 |
structure with developmental contribution from neural crest | 6.10e-08 | 132 |
tissue | 6.89e-08 | 773 |
embryonic structure | 8.15e-07 | 564 |
posterior neural tube | 8.45e-07 | 15 |
chordal neural plate | 8.45e-07 | 15 |
neural nucleus | 8.57e-07 | 9 |
nucleus of brain | 8.57e-07 | 9 |
germ layer | 9.71e-07 | 560 |
germ layer / neural crest | 9.71e-07 | 560 |
embryonic tissue | 9.71e-07 | 560 |
presumptive structure | 9.71e-07 | 560 |
germ layer / neural crest derived structure | 9.71e-07 | 560 |
epiblast (generic) | 9.71e-07 | 560 |