FFCP PHASE1:Hg19::chr19:7069690..7069726,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=79230 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=28632 | |||
|TSSclassifier=weak | |||
|UniProt=Q8N988 | |||
|association_with_transcript=219bp_to_ENST00000252840,ENST00000414706,ENST00000439035,NM_001044387,NM_001044388,NM_024341,uc002mga.2,uc002mgb.2,uc002mgc.2_5end | |||
|description=CAGE_peak_1_at_ZNF557_5end | |||
|id=chr19:7069690..7069726,+ | |||
|ontology_enrichment_celltype=CL:0000037!9.18e-27!172;CL:0000566!9.18e-27!172;CL:0000738!1.61e-26!140;CL:0000988!1.42e-25!182;CL:0002032!4.20e-24!165;CL:0000837!4.20e-24!165;CL:0002031!4.78e-21!124;CL:0002087!8.59e-20!119;CL:0000838!7.15e-16!52;CL:0000542!1.30e-15!53;CL:0000051!1.30e-15!53;CL:0000084!1.16e-10!25;CL:0000827!1.16e-10!25;CL:0000791!3.25e-10!18;CL:0000789!3.25e-10!18;CL:0002420!3.25e-10!18;CL:0002419!3.25e-10!18;CL:0000790!3.25e-10!18;CL:0000763!3.98e-10!112;CL:0000049!3.98e-10!112;CL:0000766!2.48e-08!76;CL:0000625!6.85e-08!11;CL:0000557!4.45e-07!71;CL:0000839!5.94e-07!70 | |||
|ontology_enrichment_celltype_v019=CL:0000084;9.98e-11;25!CL:0000791;3.14e-10;18!CL:0000789;3.14e-10;18!CL:0002419;3.14e-10;18!CL:0000542;1.30e-09;53!CL:0000625;5.77e-08;11 | |||
|ontology_enrichment_celltype_v019_2=CL:0000037,2.26e-27,168;CL:0000738,2.80e-27,136;CL:0000988,8.51e-27,177;CL:0002032,1.11e-24,161;CL:0000837,1.11e-24,161;CL:0002031,9.67e-22,120;CL:0002087,1.78e-20,115;CL:0000838,7.15e-16,52;CL:0000542,1.30e-15,53;CL:0000051,1.30e-15,53;CL:0000084,1.16e-10,25;CL:0000827,1.16e-10,25;CL:0000763,1.67e-10,108;CL:0000049,1.67e-10,108;CL:0000791,3.25e-10,18;CL:0000789,3.25e-10,18;CL:0002420,3.25e-10,18;CL:0002419,3.25e-10,18;CL:0000790,3.25e-10,18;CL:0000766,8.72e-09,72;CL:0000625,6.85e-08,11;CL:0000557,1.74e-07,67;CL:0000839,2.34e-07,66;CL:0000134,9.65e-07,354 | |||
|ontology_enrichment_development_v019=CL:0000790;3.14e-10;18!CL:0000051;1.30e-09;53 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!5.47e-11!102;UBERON:0003061!5.47e-11!102;UBERON:0007023!2.76e-10!115;UBERON:0002193!3.05e-10!112;UBERON:0002780!6.01e-09!41;UBERON:0001890!6.01e-09!41;UBERON:0006240!6.01e-09!41;UBERON:0003080!3.77e-08!42;UBERON:0001049!4.28e-08!57;UBERON:0005068!4.28e-08!57;UBERON:0006241!4.28e-08!57;UBERON:0007135!4.28e-08!57;UBERON:0001893!5.53e-08!34;UBERON:0002791!9.67e-08!33;UBERON:0002616!1.12e-07!59;UBERON:0001869!1.70e-07!32;UBERON:0000178!2.00e-07!15;UBERON:0000179!2.00e-07!15;UBERON:0000463!2.00e-07!15;UBERON:0002020!5.78e-07!34;UBERON:0003528!5.78e-07!34;UBERON:0001950!7.49e-07!20 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;1.81e-07;15!UBERON:0000179;1.81e-07;15!UBERON:0000463;1.81e-07;15!UBERON:0001893;3.55e-07;34!UBERON:0002780;3.95e-07;41!UBERON:0001890;3.95e-07;41!UBERON:0001869;4.99e-07;32!UBERON:0001950;6.00e-07;20!UBERON:0002791;6.76e-07;32 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,1.94e-11,98;UBERON:0003061,1.94e-11,98;UBERON:0002193,1.26e-10,108;UBERON:0007023,3.23e-10,114;UBERON:0000073,4.53e-09,53;UBERON:0002616,4.53e-09,53;UBERON:0002780,6.01e-09,41;UBERON:0001890,6.01e-09,41;UBERON:0003080,6.01e-09,41;UBERON:0006240,6.01e-09,41;UBERON:0001049,9.30e-09,56;UBERON:0005068,9.30e-09,56;UBERON:0006241,9.30e-09,56;UBERON:0007135,9.30e-09,56;UBERON:0001893,5.53e-08,34;UBERON:0001869,1.70e-07,32;UBERON:0000178,2.00e-07,15;UBERON:0000179,2.00e-07,15;UBERON:0000463,2.00e-07,15;UBERON:0002791,2.26e-07,32;UBERON:0001017,3.91e-07,81;UBERON:0003528,5.78e-07,34;UBERON:0002020,5.78e-07,34;UBERON:0001950,7.49e-07,20;UBERON:0000955,9.04e-07,68;UBERON:0006238,9.04e-07,68;UBERON:0001016,9.21e-07,89 | |||
|phase1_expression=8.53888382571616,6.85121676451146,5.49722175974288,2.00146596706261,8.93922188854576,6.10636966870258,2.53299878168311,6.31719873426831,6.52964070499596,3.68600904752263,4.18680700783456,5.46103430325431,4.22027165165526,7.92104658944298,6.62794751455832,2.6893005858071,2.41077811209591,2.19093027116212,6.8310591830671,7.87974771691443,3.67201244239655,4.70182082217132,10.304495536718,4.79060487755095,8.03472893406738,10.6978768047132,11.0835795757427,9.36658297632783,17.3080281813518,21.1106168953467,9.44378352228064,1.83884244895785,3.0120591877825,4.43704812200145,9.3735312702165,9.2410001116824,9.39521405871511,9.41792194504192,6.81851121398482,6.2933152507597,15.6740831967947,16.518576966968,17.7727141667589,13.6674344452791,20.0274250155069,15.0402117936446,9.99444858694444,11.5127008646111,18.2726758828111,10.6446185159196,6.14785695669842,11.5876292645407,5.86067657252252,12.2642089880927,8.12558919566051,12.0475097307267,14.7369321031237,17.0789848178264,5.81559395504715,10.5906578935111,8.31138263538754,8.90598510504134,7.77908264724364,11.08184351385,7.54544020434318,8.5107783703671,11.2108004819203,11.5574386018102,9.90817544998383,12.5969529928968,3.02699751316684,12.5214396235772,14.5572698222807,9.0839773114135,9.35458919846192,9.64429769338529,9.2109477540126,10.6625593917469,8.03627933485401,10.8304842621674,9.94583385995451,12.2384983022305,19.3595868907455,13.6534652815533,18.6796943311347,24.7503529088574,14.0138595462604,16.0930683187255,15.8650769468367,21.9432363543134,14.2303242277362,16.4426413023863,12.9972897562578,15.8605594294831,15.694239763483,10.0085952214529,24.785431034343,14.1483874589699,13.5696989339676,23.7404823454763,24.1182477308857,22.2520468695325,21.4309401248702,21.7250390926088,19.4439898933393,19.4949827233587,22.2059168287313,16.6518715643378,19.5089021339817,22.856868739911,25.9769016718697,24.0536561160094,17.4978144531231,30.4996544022273,21.9524599990451,22.5485591968157,18.7778041864941,15.4632350467183,18.9764769014627,24.8481023172795,26.6944216081132,26.6126572445545,20.3276410754993,26.4932285089646,21.2382235138988,21.0731754319175,17.243687935342,17.1365731741023,14.4417705723094,19.5512945241779,12.1903433156981,4.69490601792545,5.75381528295886,7.59022220007589,7.01873074890245,6.37324683427624,20.6774346233286,10.2193322763554,9.64255135073492,5.76496433402666,5.18225235589444,9.8889202000773,2.91436230634034,5.56176664176644,8.76277962867645,8.88061660226263,7.44564578905645,15.2633999555419,18.3038371449641,17.8299600638191,7.15544666520138,6.881876760849,6.59566953054429,10.1755429546322,6.71199097935849,4.40188867104108,4.80688423034664,5.94358546089456,6.75955899104749,10.3763389957048,5.63961043952806,12.9246257972147,4.63717909341522,3.67663080345869,8.91156142669936,5.53658315361295,4.71511682514957,3.26573293401634,7.66583187329416,4.74632829784064,4.76324534219059,31.6273001846552,7.75560528296651,3.48875241714027,8.94549513051573,5.44511200157693,13.1085089005087,15.4891775204359,3.90135220418193,5.04609840128076,5.33744978648525,5.18001851676036,10.5811752035921,7.54379763590253,5.88462851208451,8.1733010928263,10.37116664064,2.57753575017176,6.55536161343673,12.5503800739779,5.08125513876124,5.98915943083201,4.53244244230768,7.16299114181467,6.73708765141148,8.47556789451199,8.369388275237,7.12801714369232,7.41800787835671,7.28129089550421,5.03032699271367,5.05008341862199,6.6312815532141,7.20366700258876,9.65750765937843,2.14541457059314,7.36166488642324,3.17610112848059,12.3778848625315,9.1829677191984,10.172731255659,12.3037349394605,6.69841440049853,12.8820270022815,5.21127197728451,11.9831195891299,6.13853132515551,18.6800992940645,9.48113956015683,9.69876340912871,9.58525899794859,4.83610071492673,8.47802961552438,7.15065156704198,5.72766853240753,5.16248271700207,8.53815942907168,7.55419679432466,7.08783051504062,6.63430752098371,5.55105871926382,11.3142981313507,14.0804579096834,5.14592750554308,9.66944449467364,6.96551892047969,5.77503585335668,4.73227200159376,6.91197229320217,4.57920956778616,4.63234685476055,3.7039505495709,5.69449485866632,2.29213223872279,4.51309369788296,5.38646019724947,2.95262181849859,1.40241773803446,3.2925920906512,4.41026134156626,6.33775174109154,9.82827216677626,8.86184860022106,15.8926715789274,9.47010976781974,5.31860211925429,6.69476740992616,10.1161577931858,5.5290934826397,6.01824893530442,5.53874119027552,4.15973914111831,1.44331342025273,10.2018756378068,5.9878434060269,8.22888752238121,4.1668696131895,7.80042024161853,18.1747011530633,9.4433477830436,13.2957183287195,9.36017060556951,7.8774516013026,7.49870671894216,8.06314215354526,5.52922879245307,6.26909658919938,6.68458058582112,7.66765358330422,24.6331618947972,19.9869945210023,8.50045273717165,10.2325166926043,15.7803041782975,8.06423257510547,9.54971063895694,10.5495702489042,8.55362230113526,6.16964956219941,5.1058319833466,10.2897515747008,8.40983132590205,6.10344096366592,6.7471222955274,8.53193324001333,7.1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| |||
|short_description=p1@ZNF557 | |||
}} |
Revision as of 20:58, 20 January 2014
Short description: | p1@ZNF557 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_ZNF557_5end |
Coexpression cluster: | NA |
Association with transcript: | 219bp_to_ENST00000252840, ENST00000414706, ENST00000439035, NM_001044387, NM_001044388, NM_024341, uc002mga.2, uc002mgb.2, uc002mgc.2_5end |
EntrezGene: | ZNF557 |
HGNC: | 28632 |
UniProt: | Q8N988 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic stem cell | 2.26e-27 | 168 |
leukocyte | 2.80e-27 | 136 |
hematopoietic cell | 8.51e-27 | 177 |
hematopoietic oligopotent progenitor cell | 1.11e-24 | 161 |
hematopoietic multipotent progenitor cell | 1.11e-24 | 161 |
hematopoietic lineage restricted progenitor cell | 9.67e-22 | 120 |
nongranular leukocyte | 1.78e-20 | 115 |
lymphoid lineage restricted progenitor cell | 7.15e-16 | 52 |
lymphocyte | 1.30e-15 | 53 |
common lymphoid progenitor | 1.30e-15 | 53 |
T cell | 1.16e-10 | 25 |
pro-T cell | 1.16e-10 | 25 |
myeloid cell | 1.67e-10 | 108 |
common myeloid progenitor | 1.67e-10 | 108 |
mature alpha-beta T cell | 3.25e-10 | 18 |
alpha-beta T cell | 3.25e-10 | 18 |
immature T cell | 3.25e-10 | 18 |
mature T cell | 3.25e-10 | 18 |
immature alpha-beta T cell | 3.25e-10 | 18 |
myeloid leukocyte | 8.72e-09 | 72 |
CD8-positive, alpha-beta T cell | 6.85e-08 | 11 |
granulocyte monocyte progenitor cell | 1.74e-07 | 67 |
myeloid lineage restricted progenitor cell | 2.34e-07 | 66 |
mesenchymal cell | 9.65e-07 | 354 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 1.94e-11 | 98 |
blood island | 1.94e-11 | 98 |
hemolymphoid system | 1.26e-10 | 108 |
adult organism | 3.23e-10 | 114 |
regional part of nervous system | 4.53e-09 | 53 |
regional part of brain | 4.53e-09 | 53 |
regional part of forebrain | 6.01e-09 | 41 |
forebrain | 6.01e-09 | 41 |
anterior neural tube | 6.01e-09 | 41 |
future forebrain | 6.01e-09 | 41 |
neural tube | 9.30e-09 | 56 |
neural rod | 9.30e-09 | 56 |
future spinal cord | 9.30e-09 | 56 |
neural keel | 9.30e-09 | 56 |
telencephalon | 5.53e-08 | 34 |
cerebral hemisphere | 1.70e-07 | 32 |
blood | 2.00e-07 | 15 |
haemolymphatic fluid | 2.00e-07 | 15 |
organism substance | 2.00e-07 | 15 |
regional part of telencephalon | 2.26e-07 | 32 |
central nervous system | 3.91e-07 | 81 |
brain grey matter | 5.78e-07 | 34 |
gray matter | 5.78e-07 | 34 |
neocortex | 7.49e-07 | 20 |
brain | 9.04e-07 | 68 |
future brain | 9.04e-07 | 68 |
nervous system | 9.21e-07 | 89 |