FFCP PHASE1:Hg19::chr5:65017921..65017968,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=54557 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=23567 | |||
|TSSclassifier=strong | |||
|UniProt=Q96EQ0 | |||
|association_with_transcript=0bp_to_ENST00000381007,NM_019072,uc003jud.2_5end | |||
|description=CAGE_peak_1_at_SGTB_5end | |||
|id=chr5:65017921..65017968,- | |||
|ontology_enrichment_celltype=CL:0000766!5.22e-24!76;CL:0002009!7.61e-24!65;CL:0002194!5.79e-23!63;CL:0000576!5.79e-23!63;CL:0000040!5.79e-23!63;CL:0000559!5.79e-23!63;CL:0002057!3.97e-22!42;CL:0000738!8.88e-22!140;CL:0000557!3.01e-21!71;CL:0002087!1.07e-19!119;CL:0000839!5.03e-19!70;CL:0000860!1.68e-18!45;CL:0002031!3.75e-17!124;CL:0002032!8.69e-09!165;CL:0000837!8.69e-09!165;CL:0000791!9.84e-09!18;CL:0000789!9.84e-09!18;CL:0002420!9.84e-09!18;CL:0002419!9.84e-09!18;CL:0000790!9.84e-09!18;CL:0000037!2.06e-08!172;CL:0000566!2.06e-08!172;CL:0000763!3.41e-08!112;CL:0000049!3.41e-08!112 | |||
|ontology_enrichment_celltype_v019=CL:0000473;9.19e-18;39!CL:0000234;9.19e-18;39!CL:0000860;3.45e-17;33!CL:0002057;3.45e-17;33!CL:0000576;6.26e-15;48!CL:0000766;2.77e-12;69!CL:0000791;1.05e-08;18!CL:0000789;1.05e-08;18!CL:0002419;1.05e-08;18 | |||
|ontology_enrichment_celltype_v019_2=CL:0002009,6.65e-27,61;CL:0000766,9.89e-27,72;CL:0000473,4.39e-26,48;CL:0000234,4.39e-26,48;CL:0002194,5.20e-26,59;CL:0000576,5.20e-26,59;CL:0000040,5.20e-26,59;CL:0000559,5.20e-26,59;CL:0000557,7.25e-24,67;CL:0000738,2.09e-23,136;CL:0000860,3.97e-22,42;CL:0002057,3.97e-22,42;CL:0000839,1.84e-21,66;CL:0002087,2.14e-21,115;CL:0002031,1.19e-18,120;CL:0002032,1.40e-09,161;CL:0000837,1.40e-09,161;CL:0000037,3.66e-09,168;CL:0000763,3.79e-09,108;CL:0000049,3.79e-09,108;CL:0000791,9.84e-09,18;CL:0000789,9.84e-09,18;CL:0002420,9.84e-09,18;CL:0002419,9.84e-09,18;CL:0000790,9.84e-09,18;CL:0000988,1.64e-07,177 | |||
|ontology_enrichment_development_v019=CL:0002057;2.46e-16;42!CL:0000790;1.05e-08;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!5.64e-19!102;UBERON:0003061!5.64e-19!102;UBERON:0002371!2.69e-17!80;UBERON:0002193!3.13e-17!112;UBERON:0004765!1.42e-15!101;UBERON:0001434!1.42e-15!101;UBERON:0001474!1.80e-15!86;UBERON:0001049!7.59e-13!57;UBERON:0005068!7.59e-13!57;UBERON:0006241!7.59e-13!57;UBERON:0007135!7.59e-13!57;UBERON:0002616!3.68e-12!59;UBERON:0002204!6.11e-12!167;UBERON:0002780!1.22e-11!41;UBERON:0001890!1.22e-11!41;UBERON:0006240!1.22e-11!41;UBERON:0003080!1.23e-11!42;UBERON:0000955!2.35e-11!69;UBERON:0006238!2.35e-11!69;UBERON:0001869!1.10e-10!32;UBERON:0002020!1.76e-10!34;UBERON:0003528!1.76e-10!34;UBERON:0001017!1.99e-10!82;UBERON:0001893!2.56e-10!34;UBERON:0000073!5.94e-10!94;UBERON:0001016!5.94e-10!94;UBERON:0002791!8.57e-10!33;UBERON:0005743!9.71e-10!86;UBERON:0002619!1.72e-09!22;UBERON:0002405!4.43e-09!115;UBERON:0001950!4.84e-09!20;UBERON:0000956!2.01e-08!25;UBERON:0000203!2.01e-08!25;UBERON:0003075!1.88e-07!86;UBERON:0007284!1.88e-07!86 | |||
|ontology_enrichment_uberon_v019=UBERON:0001869;1.13e-09;32!UBERON:0002619;1.68e-09;22!UBERON:0003528;2.48e-09;34!UBERON:0002020;2.48e-09;34!UBERON:0001893;2.52e-09;34!UBERON:0001950;4.79e-09;20!UBERON:0002791;5.05e-09;32!UBERON:0000956;1.91e-08;25!UBERON:0000203;1.91e-08;25!UBERON:0002780;2.31e-08;41!UBERON:0001890;2.31e-08;41!UBERON:0000073;1.96e-07;53!UBERON:0002616;1.96e-07;53 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,8.08e-21,98;UBERON:0003061,8.08e-21,98;UBERON:0002371,2.37e-19,76;UBERON:0002193,7.64e-19,108;UBERON:0001474,2.87e-17,82;UBERON:0001434,2.21e-16,100;UBERON:0002405,3.75e-16,93;UBERON:0004765,5.81e-16,90;UBERON:0001049,7.98e-13,56;UBERON:0005068,7.98e-13,56;UBERON:0006241,7.98e-13,56;UBERON:0007135,7.98e-13,56;UBERON:0002204,1.22e-12,167;UBERON:0000073,1.98e-12,53;UBERON:0002616,1.98e-12,53;UBERON:0002780,1.22e-11,41;UBERON:0001890,1.22e-11,41;UBERON:0003080,1.22e-11,41;UBERON:0006240,1.22e-11,41;UBERON:0000955,2.62e-11,68;UBERON:0006238,2.62e-11,68;UBERON:0001869,1.10e-10,32;UBERON:0001016,1.54e-10,89;UBERON:0003528,1.76e-10,34;UBERON:0002020,1.76e-10,34;UBERON:0001017,2.28e-10,81;UBERON:0001893,2.56e-10,34;UBERON:0002791,7.35e-10,32;UBERON:0002619,1.72e-09,22;UBERON:0001950,4.84e-09,20;UBERON:0000956,2.01e-08,25;UBERON:0000203,2.01e-08,25;UBERON:0003075,2.01e-07,82;UBERON:0007284,2.01e-07,82;UBERON:0003056,6.26e-07,61 | |||
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| |||
|short_description=p1@SGTB | |||
}} |
Revision as of 05:40, 22 January 2014
Short description: | p1@SGTB |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_SGTB_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000381007, NM_019072, uc003jud.2_5end |
EntrezGene: | SGTB |
HGNC: | 23567 |
UniProt: | Q96EQ0 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
macrophage dendritic cell progenitor | 6.65e-27 | 61 |
myeloid leukocyte | 9.89e-27 | 72 |
defensive cell | 4.39e-26 | 48 |
phagocyte | 4.39e-26 | 48 |
monopoietic cell | 5.20e-26 | 59 |
monocyte | 5.20e-26 | 59 |
monoblast | 5.20e-26 | 59 |
promonocyte | 5.20e-26 | 59 |
granulocyte monocyte progenitor cell | 7.25e-24 | 67 |
leukocyte | 2.09e-23 | 136 |
classical monocyte | 3.97e-22 | 42 |
CD14-positive, CD16-negative classical monocyte | 3.97e-22 | 42 |
myeloid lineage restricted progenitor cell | 1.84e-21 | 66 |
nongranular leukocyte | 2.14e-21 | 115 |
hematopoietic lineage restricted progenitor cell | 1.19e-18 | 120 |
hematopoietic oligopotent progenitor cell | 1.40e-09 | 161 |
hematopoietic multipotent progenitor cell | 1.40e-09 | 161 |
hematopoietic stem cell | 3.66e-09 | 168 |
myeloid cell | 3.79e-09 | 108 |
common myeloid progenitor | 3.79e-09 | 108 |
mature alpha-beta T cell | 9.84e-09 | 18 |
alpha-beta T cell | 9.84e-09 | 18 |
immature T cell | 9.84e-09 | 18 |
mature T cell | 9.84e-09 | 18 |
immature alpha-beta T cell | 9.84e-09 | 18 |
hematopoietic cell | 1.64e-07 | 177 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 8.08e-21 | 98 |
blood island | 8.08e-21 | 98 |
bone marrow | 2.37e-19 | 76 |
hemolymphoid system | 7.64e-19 | 108 |
bone element | 2.87e-17 | 82 |
skeletal system | 2.21e-16 | 100 |
immune system | 3.75e-16 | 93 |
skeletal element | 5.81e-16 | 90 |
neural tube | 7.98e-13 | 56 |
neural rod | 7.98e-13 | 56 |
future spinal cord | 7.98e-13 | 56 |
neural keel | 7.98e-13 | 56 |
musculoskeletal system | 1.22e-12 | 167 |
regional part of nervous system | 1.98e-12 | 53 |
regional part of brain | 1.98e-12 | 53 |
regional part of forebrain | 1.22e-11 | 41 |
forebrain | 1.22e-11 | 41 |
anterior neural tube | 1.22e-11 | 41 |
future forebrain | 1.22e-11 | 41 |
brain | 2.62e-11 | 68 |
future brain | 2.62e-11 | 68 |
cerebral hemisphere | 1.10e-10 | 32 |
nervous system | 1.54e-10 | 89 |
brain grey matter | 1.76e-10 | 34 |
gray matter | 1.76e-10 | 34 |
central nervous system | 2.28e-10 | 81 |
telencephalon | 2.56e-10 | 34 |
regional part of telencephalon | 7.35e-10 | 32 |
regional part of cerebral cortex | 1.72e-09 | 22 |
neocortex | 4.84e-09 | 20 |
cerebral cortex | 2.01e-08 | 25 |
pallium | 2.01e-08 | 25 |
neural plate | 2.01e-07 | 82 |
presumptive neural plate | 2.01e-07 | 82 |
pre-chordal neural plate | 6.26e-07 | 61 |