FFCP PHASE1:Hg19::chr6:16761678..16761715,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=6310 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10548 | |||
|TSSclassifier=strong | |||
|UniProt=P54253 | |||
|association_with_transcript=0bp_to_ENST00000244769,ENST00000344707,ENST00000467008,ENST00000473388,ENST00000479680,ENST00000483954,ENST00000492857_5end | |||
|coexpression_cluster_id=C26 | |||
|description=CAGE_peak_1_at_ATXN1_5end | |||
|id=chr6:16761678..16761715,- | |||
|ontology_enrichment_celltype=CL:0000766!6.44e-21!76;CL:0002057!2.67e-19!42;CL:0000738!1.42e-18!140;CL:0000557!5.08e-17!71;CL:0002009!1.51e-16!65;CL:0000860!1.60e-16!45;CL:0002194!4.89e-16!63;CL:0000576!4.89e-16!63;CL:0000040!4.89e-16!63;CL:0000559!4.89e-16!63;CL:0000839!1.50e-15!70;CL:0002087!1.41e-13!119;CL:0002031!2.97e-13!124;CL:0002032!1.60e-07!165;CL:0000837!1.60e-07!165;CL:0000763!1.82e-07!112;CL:0000049!1.82e-07!112;CL:0000037!2.32e-07!172;CL:0000566!2.32e-07!172;CL:0000988!5.75e-07!182;CL:0000791!9.87e-07!18;CL:0000789!9.87e-07!18;CL:0002420!9.87e-07!18;CL:0002419!9.87e-07!18;CL:0000790!9.87e-07!18 | |||
|ontology_enrichment_celltype_v019=CL:0000860;2.71e-19;33!CL:0002057;2.71e-19;33!CL:0000473;1.42e-16;39!CL:0000234;1.42e-16;39!CL:0000576;9.89e-11;48!CL:0000766;2.83e-10;69 | |||
|ontology_enrichment_celltype_v019_2=CL:0000766,5.84e-23,72;CL:0000473,4.84e-20,48;CL:0000234,4.84e-20,48;CL:0000738,9.60e-20,136;CL:0000860,2.67e-19,42;CL:0002057,2.67e-19,42;CL:0000557,7.47e-19,67;CL:0002009,1.80e-18,61;CL:0002194,5.84e-18,59;CL:0000576,5.84e-18,59;CL:0000040,5.84e-18,59;CL:0000559,5.84e-18,59;CL:0000839,2.82e-17,66;CL:0002087,1.27e-14,115;CL:0002031,3.00e-14,120;CL:0000763,3.64e-08,108;CL:0000049,3.64e-08,108;CL:0002032,4.52e-08,161;CL:0000837,4.52e-08,161;CL:0000037,6.90e-08,168;CL:0000988,1.11e-07,177;CL:0000791,9.87e-07,18;CL:0000789,9.87e-07,18;CL:0002420,9.87e-07,18;CL:0002419,9.87e-07,18;CL:0000790,9.87e-07,18 | |||
|ontology_enrichment_development_v019=CL:0002057;2.08e-14;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!5.04e-22!115;UBERON:0002390!4.00e-17!102;UBERON:0003061!4.00e-17!102;UBERON:0001049!5.62e-17!57;UBERON:0005068!5.62e-17!57;UBERON:0006241!5.62e-17!57;UBERON:0007135!5.62e-17!57;UBERON:0002193!3.63e-14!112;UBERON:0002780!4.01e-14!41;UBERON:0001890!4.01e-14!41;UBERON:0006240!4.01e-14!41;UBERON:0003080!4.70e-14!42;UBERON:0002616!4.77e-14!59;UBERON:0000955!4.82e-13!69;UBERON:0006238!4.82e-13!69;UBERON:0002371!8.12e-13!80;UBERON:0002020!3.45e-12!34;UBERON:0003528!3.45e-12!34;UBERON:0001017!6.39e-12!82;UBERON:0001893!6.60e-12!34;UBERON:0002791!1.09e-11!33;UBERON:0001474!2.87e-11!86;UBERON:0001869!4.20e-11!32;UBERON:0005743!9.46e-11!86;UBERON:0002405!6.18e-10!115;UBERON:0002619!6.87e-10!22;UBERON:0002346!1.32e-09!90;UBERON:0003075!1.67e-09!86;UBERON:0007284!1.67e-09!86;UBERON:0001950!4.63e-09!20;UBERON:0000073!1.16e-08!94;UBERON:0001016!1.16e-08!94;UBERON:0000956!2.28e-08!25;UBERON:0000203!2.28e-08!25;UBERON:0004765!2.63e-08!101;UBERON:0001434!2.63e-08!101;UBERON:0003056!5.15e-07!61 | |||
|ontology_enrichment_uberon_v019=UBERON:0002780;1.56e-10;41!UBERON:0001890;1.56e-10;41!UBERON:0003528;2.51e-10;34!UBERON:0002020;2.51e-10;34!UBERON:0002791;2.72e-10;32!UBERON:0001893;4.05e-10;34!UBERON:0001869;4.49e-10;32!UBERON:0002619;6.89e-10;22!UBERON:0000073;1.04e-09;53!UBERON:0002616;1.04e-09;53!UBERON:0001950;4.64e-09;20!UBERON:0000956;2.25e-08;25!UBERON:0000203;2.25e-08;25!UBERON:0000955;9.98e-07;68 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,1.55e-21,114;UBERON:0002390,1.60e-18,98;UBERON:0003061,1.60e-18,98;UBERON:0001049,5.03e-17,56;UBERON:0005068,5.03e-17,56;UBERON:0006241,5.03e-17,56;UBERON:0007135,5.03e-17,56;UBERON:0000073,4.81e-16,53;UBERON:0002616,4.81e-16,53;UBERON:0002193,2.69e-15,108;UBERON:0002371,3.68e-14,76;UBERON:0002780,4.01e-14,41;UBERON:0001890,4.01e-14,41;UBERON:0003080,4.01e-14,41;UBERON:0006240,4.01e-14,41;UBERON:0000955,5.07e-13,68;UBERON:0006238,5.07e-13,68;UBERON:0001474,1.99e-12,82;UBERON:0003528,3.45e-12,34;UBERON:0002020,3.45e-12,34;UBERON:0001893,6.60e-12,34;UBERON:0001017,7.00e-12,81;UBERON:0002405,1.66e-11,93;UBERON:0002791,2.33e-11,32;UBERON:0001869,4.20e-11,32;UBERON:0002346,4.56e-10,86;UBERON:0003075,5.59e-10,82;UBERON:0007284,5.59e-10,82;UBERON:0002619,6.87e-10,22;UBERON:0001016,1.56e-09,89;UBERON:0004765,3.20e-09,90;UBERON:0001950,4.63e-09,20;UBERON:0000956,2.28e-08,25;UBERON:0000203,2.28e-08,25;UBERON:0001434,4.07e-08,100;UBERON:0003056,2.59e-07,61 | |||
|phase1_expression=25.2532947186074,30.4022743925196,33.2652393666492,25.0183245882826,26.8176656656373,29.6595098194125,25.3299878168311,8.2123583545488,6.00726944859629,16.9556416186041,10.4670175195864,16.6015442818931,15.8260186937072,7.79728023648294,11.5989081504771,29.5823064438781,29.5320318731749,28.4820935251076,21.9569759455728,23.0236378603593,14.8920504608305,22.2552852249442,16.3154512664702,31.0704944915447,15.6928299493503,68.1607579271725,57.7988149727618,65.8809239595495,54.6776344819977,95.573520126206,53.4115625440462,3.67768489791571,3.0120591877825,18.4877005083394,0,6.11327699695913,7.92721186204087,74.7893801518035,148.402891127905,85.0682613206139,30.6764199708696,41.7822829164484,42.2423930920066,242.524262284314,275.093687005453,264.174042633532,322.379074188185,306.731244464282,266.966891711579,349.258564279091,265.894813377206,231.043138601148,208.915882526391,154.270839376534,176.054432572644,244.526799065844,290.372143661548,231.914635947327,300.574382308226,253.533931390114,227.604016784459,218.031709423419,245.938689847472,253.17750181642,504.964075213736,416.460754923297,472.099264738646,332.150735469415,328.534238604727,236.735840728577,437.098440901292,359.438972723863,337.981829786865,34.8571222414704,32.9536664945817,29.561869016681,46.8410391880885,53.9135045301008,79.2377142416605,18.8108410869224,26.455918067479,21.5543701442268,15.839662001519,12.0150494477669,9.7846017924991,10.2415253415962,12.0118796110804,16.0930683187255,9.91567309177293,7.63243003628291,27.3222225172535,53.4385842327554,47.7841535156536,34.3645454305467,60.5349248020059,5.26768169550154,109.173922413177,197.291402900081,157.901951231623,53.499678525017,60.2956193272142,57.2871844939027,50.6549493860569,85.1175890602726,100.755220356394,103.677862665135,136.214343473803,49.4432494141106,54.2347479324692,79.9168216373866,84.5631054424696,117.949855894166,27.7295873113053,27.8242461213302,28.2245914273437,85.7751724220576,96.9547848812861,92.0921553893448,131.317220158122,49.377639220235,54.0399266700827,40.8694379112801,60.3806227501869,57.8499482417971,68.7118996037902,55.642654230344,59.9423437752364,100.601764869141,152.440911596599,102.97015116067,138.969913798958,24.8159318090345,11.6354931277613,22.0477882954585,20.5548543360715,10.8634889220618,55.6700162935769,35.5243455320924,39.7991580260726,47.2283616595261,35.0460794915573,53.1120151143225,6.19301990097322,10.381964397964,113.916135172794,132.512730084742,129.766969466412,10.7320780937404,8.00792875092179,7.4291500265913,12.3232692567357,13.763753521698,15.2741820707341,11.3061588384802,15.1019797035566,9.90424950984243,11.4947231595246,11.8871709217891,19.5671444477691,22.4262810552329,10.876391561947,5.32190474002959,12.4471649349566,13.2358708924513,14.5825550618717,17.5027467436796,22.9019960078693,18.8061172407148,9.19899824795299,8.54339093611316,10.6257011479636,115.966767343736,209.401342640096,7.84969293856562,45.7214195559693,28.7451261478596,41.7088919561639,67.69344249672,28.7281389580669,44.2935304112423,29.8897188043174,26.6400952290533,20.2287173009848,27.6156877742861,22.2308188234304,29.2119835354718,34.5705554687999,20.3859645695403,3.43376084513353,5.70471821544449,7.62188270814185,13.6224018426767,9.55050371771976,7.44389275521917,11.6367877615289,11.4235915099944,25.3148163880625,16.6320400019487,35.3591708868336,21.8438726865126,21.5585442544872,7.40678901397891,15.8900520237394,9.6972440419464,50.9214040221772,38.0044866790784,24.4888036017753,14.0655907118426,71.3970750041671,49.3317568170891,38.5716060110403,61.2185836012181,58.4307840781949,66.728899871818,33.8732678523493,61.2658086035796,59.9237581741372,88.099387211196,57.7152864487217,39.6032839206089,75.2620336135222,36.0692511654952,34.081679054408,11.7889120429611,12.5463215471784,12.9062067925052,3.41526377162867,1.85541675650079,5.11253348625881,7.56725701612204,5.04641701751257,2.91981887260664,32.8544017892614,34.0917697242229,22.1015874163969,10.2160944167035,14.4375896333917,7.09840800239063,7.75489574359268,6.50729780685401,8.05146000946476,5.01122721412534,6.16903609688851,5.66291494272691,10.0072947213927,5.00171304030308,12.548642728619,14.0241773803446,20.57870056657,20.5812195939759,51.9695642769506,32.4332981503617,40.1737136543355,39.2902158479039,10.4540172761647,13.8969926341806,17.4502953799715,8.99214026060957,8.04231779293047,10.6476711932309,15.6387986548956,8.31947828223663,20.2063878835383,17.6214215562117,33.4614778572092,4.04226053731007,6.94478268864916,6.84914948044554,26.0767451326561,24.8960987007513,56.383694394014,47.5028658232653,60.7901453760899,6.56136837907439,25.3653013580278,14.7446101132082,6.71688920271362,10.4628217865026,4.21720947081732,145.335655179303,19.1945586148833,99.3101673440298,96.7044887427811,90.1370974664353,7.93723678652113,10.3136874900735,16.4104426094066,18.8179690624976,10.5912317484423,12.9147514872885,12.0047101704843,13.3435990370979,14.3866822714982,11.3674343022473,35.0326349703578,7.15312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| |||
|short_description=p1@ATXN1 | |||
}} |
Revision as of 10:16, 22 January 2014
Short description: | p1@ATXN1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_ATXN1_5end |
Coexpression cluster: | C26_Eosinophils_Neutrophils_CD14_CD14CD16_Basophils_Monocytederived_Whole |
Association with transcript: | 0bp_to_ENST00000244769, ENST00000344707, ENST00000467008, ENST00000473388, ENST00000479680, ENST00000483954, ENST00000492857_5end |
EntrezGene: | ATXN1 |
HGNC: | 10548 |
UniProt: | P54253 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
myeloid leukocyte | 5.84e-23 | 72 |
defensive cell | 4.84e-20 | 48 |
phagocyte | 4.84e-20 | 48 |
leukocyte | 9.60e-20 | 136 |
classical monocyte | 2.67e-19 | 42 |
CD14-positive, CD16-negative classical monocyte | 2.67e-19 | 42 |
granulocyte monocyte progenitor cell | 7.47e-19 | 67 |
macrophage dendritic cell progenitor | 1.80e-18 | 61 |
monopoietic cell | 5.84e-18 | 59 |
monocyte | 5.84e-18 | 59 |
monoblast | 5.84e-18 | 59 |
promonocyte | 5.84e-18 | 59 |
myeloid lineage restricted progenitor cell | 2.82e-17 | 66 |
nongranular leukocyte | 1.27e-14 | 115 |
hematopoietic lineage restricted progenitor cell | 3.00e-14 | 120 |
myeloid cell | 3.64e-08 | 108 |
common myeloid progenitor | 3.64e-08 | 108 |
hematopoietic oligopotent progenitor cell | 4.52e-08 | 161 |
hematopoietic multipotent progenitor cell | 4.52e-08 | 161 |
hematopoietic stem cell | 6.90e-08 | 168 |
hematopoietic cell | 1.11e-07 | 177 |
mature alpha-beta T cell | 9.87e-07 | 18 |
alpha-beta T cell | 9.87e-07 | 18 |
immature T cell | 9.87e-07 | 18 |
mature T cell | 9.87e-07 | 18 |
immature alpha-beta T cell | 9.87e-07 | 18 |
Ontology term | p-value | n |
---|---|---|
adult organism | 1.55e-21 | 114 |
hematopoietic system | 1.60e-18 | 98 |
blood island | 1.60e-18 | 98 |
neural tube | 5.03e-17 | 56 |
neural rod | 5.03e-17 | 56 |
future spinal cord | 5.03e-17 | 56 |
neural keel | 5.03e-17 | 56 |
regional part of nervous system | 4.81e-16 | 53 |
regional part of brain | 4.81e-16 | 53 |
hemolymphoid system | 2.69e-15 | 108 |
bone marrow | 3.68e-14 | 76 |
regional part of forebrain | 4.01e-14 | 41 |
forebrain | 4.01e-14 | 41 |
anterior neural tube | 4.01e-14 | 41 |
future forebrain | 4.01e-14 | 41 |
brain | 5.07e-13 | 68 |
future brain | 5.07e-13 | 68 |
bone element | 1.99e-12 | 82 |
brain grey matter | 3.45e-12 | 34 |
gray matter | 3.45e-12 | 34 |
telencephalon | 6.60e-12 | 34 |
central nervous system | 7.00e-12 | 81 |
immune system | 1.66e-11 | 93 |
regional part of telencephalon | 2.33e-11 | 32 |
cerebral hemisphere | 4.20e-11 | 32 |
neurectoderm | 4.56e-10 | 86 |
neural plate | 5.59e-10 | 82 |
presumptive neural plate | 5.59e-10 | 82 |
regional part of cerebral cortex | 6.87e-10 | 22 |
nervous system | 1.56e-09 | 89 |
skeletal element | 3.20e-09 | 90 |
neocortex | 4.63e-09 | 20 |
cerebral cortex | 2.28e-08 | 25 |
pallium | 2.28e-08 | 25 |
skeletal system | 4.07e-08 | 100 |
pre-chordal neural plate | 2.59e-07 | 61 |