FFCP PHASE1:Hg19::chr6:136359188..136359203,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=27115 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=8792 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=14bp_to_uc003qgr.2_5end | |||
|description=CAGE_peak_5_at_PDE7B_5end | |||
|id=chr6:136359188..136359203,+ | |||
|ontology_enrichment_celltype=CL:0000055!4.57e-25!180;CL:0000680!5.75e-24!57;CL:0000056!5.75e-24!57;CL:0000355!5.75e-24!57;CL:0000187!2.11e-23!54;CL:0000183!2.82e-21!59;CL:0000222!6.08e-20!119;CL:0000192!1.59e-19!42;CL:0000514!1.59e-19!42;CL:0000393!7.53e-19!60;CL:0000211!7.53e-19!60;CL:0000359!1.12e-18!32;CL:0000057!1.48e-18!75;CL:0002494!1.36e-10!16;CL:0002620!6.54e-10!23;CL:0002139!2.77e-08!24;CL:0002539!5.97e-08!10;CL:0000115!1.29e-07!35 | |||
|ontology_enrichment_celltype_v019=CL:0000359;3.71e-23;32!CL:0000192;1.44e-15;43!CL:0002494;1.59e-13;16!CL:0000187;7.65e-13;55!CL:0002539;1.45e-11;10!CL:0000393;3.45e-11;61!CL:0000211;3.45e-11;61!CL:0002139;2.49e-10;24!CL:0002620;1.16e-09;23!CL:0000115;1.55e-08;36!CL:0000071;2.69e-08;18!CL:1000413;1.39e-07;9 | |||
|ontology_enrichment_celltype_v019_2=CL:0000187,2.47e-25,55;CL:0000680,1.12e-24,58;CL:0000056,1.12e-24,58;CL:0000355,1.12e-24,58;CL:0000359,7.21e-24,32;CL:0000222,2.49e-23,121;CL:0000393,1.75e-21,61;CL:0000211,1.75e-21,61;CL:0000192,1.15e-20,43;CL:0000514,1.15e-20,43;CL:0000057,7.98e-17,76;CL:0002494,1.73e-13,16;CL:0002539,1.30e-11,10;CL:0000048,6.96e-11,427;CL:0002139,1.79e-10,24;CL:0000723,2.63e-10,433;CL:0000115,1.16e-09,36;CL:0000034,1.44e-09,441;CL:0002620,1.50e-09,23;CL:0000071,1.79e-08,18;CL:0002546,1.79e-08,18;CL:0002078,3.97e-08,45;CL:1000413,7.98e-08,9;CL:0002321,1.93e-07,250 | |||
|ontology_enrichment_development_v019=CL:0000514;1.44e-15;43!CL:0000355;2.09e-12;58!CL:0002546;2.69e-08;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:17;4.00e-07;5!DOID:450;4.00e-07;5!DOID:66;4.00e-07;5!DOID:423;4.00e-07;5!DOID:0080000;4.00e-07;5!DOID:11722;4.00e-07;5 | |||
|ontology_enrichment_disease_v019_2=DOID:17,4.83e-07,5;DOID:450,4.83e-07,5;DOID:66,4.83e-07,5;DOID:423,4.83e-07,5;DOID:0080000,4.83e-07,5;DOID:11722,4.83e-07,5 | |||
|ontology_enrichment_uberon=UBERON:0002049!6.58e-31!79;UBERON:0007798!6.58e-31!79;UBERON:0001009!1.82e-29!113;UBERON:0004535!2.99e-29!110;UBERON:0004872!2.17e-28!84;UBERON:0000914!1.03e-26!83;UBERON:0002329!1.03e-26!83;UBERON:0003077!1.03e-26!83;UBERON:0003059!1.03e-26!83;UBERON:0007282!1.03e-26!83;UBERON:0009618!1.03e-26!83;UBERON:0007285!1.03e-26!83;UBERON:0004290!2.00e-25!70;UBERON:0000055!2.00e-25!69;UBERON:0001637!2.09e-25!42;UBERON:0003509!2.09e-25!42;UBERON:0004572!2.09e-25!42;UBERON:0001981!3.86e-25!60;UBERON:0007500!3.86e-25!60;UBERON:0004537!3.86e-25!60;UBERON:0006965!3.86e-25!60;UBERON:0002385!4.92e-24!63;UBERON:0001015!4.92e-24!63;UBERON:0000383!4.92e-24!63;UBERON:0001134!9.61e-24!61;UBERON:0002036!9.61e-24!61;UBERON:0003082!9.61e-24!61;UBERON:0003914!4.90e-22!118;UBERON:0000477!1.02e-21!286;UBERON:0004573!3.65e-21!33;UBERON:0004571!3.65e-21!33;UBERON:0000486!7.65e-20!82;UBERON:0000119!1.20e-18!312;UBERON:0004111!3.08e-18!241;UBERON:0000483!8.89e-18!309;UBERON:0000025!2.19e-17!194;UBERON:0000490!3.88e-16!138;UBERON:0005256!1.20e-15!143;UBERON:0000475!4.75e-15!365;UBERON:0000948!2.00e-14!24;UBERON:0005498!2.00e-14!24;UBERON:0004140!2.00e-14!24;UBERON:0009881!2.00e-14!24;UBERON:0004141!2.00e-14!24;UBERON:0003084!2.00e-14!24;UBERON:0007005!2.00e-14!24;UBERON:0004139!2.00e-14!24;UBERON:0004291!2.00e-14!24;UBERON:0007100!3.88e-14!27;UBERON:0000947!6.57e-14!21;UBERON:0010191!6.57e-14!21;UBERON:0000481!1.76e-13!347;UBERON:0000468!2.74e-13!659;UBERON:0000467!1.46e-11!625;UBERON:0000480!2.06e-11!626;UBERON:0001135!1.85e-08!15;UBERON:0002100!3.29e-08!216;UBERON:0004237!5.97e-08!10;UBERON:0004695!5.97e-08!10;UBERON:0002111!5.97e-08!10;UBERON:0004178!5.97e-08!10;UBERON:0007023!1.06e-07!115;UBERON:0003103!5.49e-07!69;UBERON:0002050!9.73e-07!605;UBERON:0005423!9.73e-07!605 | |||
|ontology_enrichment_uberon_v019=UBERON:0004573;3.28e-27;33!UBERON:0004571;3.28e-27;33!UBERON:0001637;1.76e-24;42!UBERON:0003509;1.76e-24;42!UBERON:0004572;1.76e-24;42!UBERON:0000947;5.59e-18;21!UBERON:0010191;5.59e-18;21!UBERON:0007500;9.64e-17;56!UBERON:0001981;9.64e-17;56!UBERON:0004537;9.64e-17;56!UBERON:0000948;2.50e-16;22!UBERON:0007100;4.32e-15;25!UBERON:0000055;6.45e-14;65!UBERON:0002049;2.03e-13;75!UBERON:0007798;2.03e-13;75!UBERON:0004237;1.45e-11;10!UBERON:0004695;1.45e-11;10!UBERON:0002111;1.45e-11;10!UBERON:0004178;1.45e-11;10!UBERON:0004535;6.04e-11;109!UBERON:0001009;6.70e-10;112!UBERON:0003914;6.72e-09;74!UBERON:0004638;2.69e-08;18!UBERON:0001986;2.69e-08;18!UBERON:0004852;2.69e-08;18!UBERON:0003915;1.39e-07;9!UBERON:0004700;1.39e-07;9!UBERON:0001917;1.39e-07;9!UBERON:0006914;7.87e-07;25!UBERON:0001135;8.39e-07;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004535,1.03e-37,109;UBERON:0004872,1.70e-37,83;UBERON:0001009,2.56e-37,112;UBERON:0002049,4.77e-37,78;UBERON:0007798,4.77e-37,78;UBERON:0001637,1.53e-33,42;UBERON:0003509,1.53e-33,42;UBERON:0004572,1.53e-33,42;UBERON:0007500,2.60e-33,59;UBERON:0001981,2.60e-33,59;UBERON:0004537,2.60e-33,59;UBERON:0006965,2.60e-33,59;UBERON:0000055,4.52e-33,68;UBERON:0003914,1.61e-29,117;UBERON:0004573,2.10e-29,33;UBERON:0004571,2.10e-29,33;UBERON:0001134,3.54e-22,62;UBERON:0002036,3.54e-22,62;UBERON:0003082,3.54e-22,62;UBERON:0007524,3.06e-21,73;UBERON:0002329,4.72e-21,71;UBERON:0003059,4.72e-21,71;UBERON:0007282,4.72e-21,71;UBERON:0004290,4.72e-21,71;UBERON:0009618,4.72e-21,71;UBERON:0002385,4.74e-21,64;UBERON:0001015,4.74e-21,64;UBERON:0000383,4.74e-21,64;UBERON:0007503,8.78e-21,78;UBERON:0003077,1.48e-20,72;UBERON:0007285,1.48e-20,72;UBERON:0000948,3.62e-18,24;UBERON:0005498,3.62e-18,24;UBERON:0004140,3.62e-18,24;UBERON:0009881,3.62e-18,24;UBERON:0004141,3.62e-18,24;UBERON:0003084,3.62e-18,24;UBERON:0007005,3.62e-18,24;UBERON:0004139,3.62e-18,24;UBERON:0004291,3.62e-18,24;UBERON:0000947,4.93e-18,21;UBERON:0010191,4.93e-18,21;UBERON:0000486,7.45e-18,83;UBERON:0007100,6.03e-17,27;UBERON:0000490,4.16e-16,148;UBERON:0000926,8.19e-14,315;UBERON:0004120,8.19e-14,315;UBERON:0006603,8.19e-14,315;UBERON:0000025,1.19e-13,192;UBERON:0004111,4.08e-13,240;UBERON:0000119,9.70e-13,309;UBERON:0005256,1.42e-12,122;UBERON:0000483,4.07e-12,306;UBERON:0004237,1.30e-11,10;UBERON:0004695,1.30e-11,10;UBERON:0002111,1.30e-11,10;UBERON:0004178,1.30e-11,10;UBERON:0003081,2.16e-11,203;UBERON:0003104,3.27e-09,160;UBERON:0009142,3.27e-09,160;UBERON:0004638,1.79e-08,18;UBERON:0001986,1.79e-08,18;UBERON:0004852,1.79e-08,18;UBERON:0004797,2.90e-08,7;UBERON:0002204,4.88e-08,167;UBERON:0003915,7.98e-08,9;UBERON:0004700,7.98e-08,9;UBERON:0001917,7.98e-08,9;UBERON:0003103,4.49e-07,68;UBERON:0006914,4.91e-07,25;UBERON:0001135,7.82e-07,15 | |||
|phase1_expression=1.09007027562334,0.642301571672949,0.281908808191942,0,0.446961094427288,0,0,0,1.04474251279935,0.245733936501509,0,0,0,0.618831764800233,0.994192127183747,2.6893005858071,3.61616716814386,3.65155045193687,1.95173119516203,0,0.408001382488506,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.263384084775077,0,0,0,0.167186495390678,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.87613732627923,4.02420515822182,1.66221330396589,0.361439152384566,0.50133791063589,1.59331170856906,0,0.486634870302636,0.756278537312543,0.221729397462564,1.40535657109002,0.851363990735132,0,0,0,0,0,0,0,0,2.38514888840046,2.58070378531837,3.12426451446835,3.39184765154406,2.51699661725944,1.92582629358047,3.13492449805216,2.58416759169329,3.5576626268671,6.6944122552934,0,0,0,1.83831540172934,0.81014194788176,2.58969212023831,3.14341121676638,2.25222960966644,0,1.89853131913626,1.09921046358244,0,0,0,0.496971951695318,2.27934920996244,7.15009576391382,10.8997915884549,2.12801029319014,0.560677600142307,1.06748995729705,0.24666754841716,9.02512002659322,2.82892411346345,7.35578564010564,5.75158225050739,0.576175924479999,0.468642863667593,0.624320153660641,0.570471821544449,1.19558944441441,0.469737994575059,0,0.702254033511242,0.61246251376468,0.491337269247072,0.619954687054593,7.12801714369232,5.19260551484969,0,0,0.505008341862199,0.625592599359821,0.554128230968366,4.82875382968922,1.5324389789951,5.85928429735728,1.47461838108027,5.02290979928813,3.20336083227851,2.33125091275518,5.40163972951924,3.7098910525838,2.31876486041066,1.30281799432113,7.25738228637445,0.389748020644795,9.34004964703224,3.31379635112278,5.81925804547723,4.9701342952326,2.51880245569101,0.508681776931463,0,0,0,0,0,0,0,0,0,4.69348596989448,0.643240938192885,1.38134921352481,0.464367928031979,1.44375896333917,0,0,0,0,0,0,0,0,0,0.738155454624648,0,0.8231480226628,0,0,0,2.95394953340702,0,0,1.71567810298526,0,0,0,0,0,0,1.44331342025273,0,4.57893907519705,1.15493158208859,0.462985512576611,0.570762456703795,0,0,0,0,0,0,0,0,0,0,0,0,0,3.93923419527467,4.17947864909188,1.76739406796932,0,0,0,0,0,0,0,1.79409734952577,0.43596006883328,1.54010400223995,1.16344544182,0,0,0,0,0,0,0,1.14382394926518,2.17048642156577,0,0.65147236858747,0.710783897485092,0.791951872933429,0,0,0.499864955910285,0,0,0,0,0,4.27910715122155,0.144781306667579,0.61642896765115,1.61154866915906,0,0,0,0,0,0,0,0,0,0,0,0,0.981531933753119,0.500170521059677,0.271265023699736,1.03985430765404,0.892144943985809,0.630809660135739,1.05427273493442,0.300946099727719,0,0,1.32845119707087,0,0.60818530127658,0.195801157462741,0,0,0,0,0,0,0,0.248107807818777,0.61384789315225,0,0.384417447767103,1.02341449813341,0.160853921143607,1.48418066444991,3.85524234506639,2.48586415438378,5.33826514089759,3.63478100428535,3.02146983995894,0,0,0,0.459257792658427,0,0.262248829918848,0,0,0,0,0,1.13733384070897,1.02056223165909,0.863663664408557,1.54227252690289,0,0,0.254876273045038,0,0,0,0,0,0.656029291399411,0,0.824328093181778,0,0,0,0,0,1.54673149267395,0.308097234229289,0,1.10269257987624,1.28904293841928,1.16013355131383,0.596586391912706,1.06838442776085,0,0,0,0,3.253918845081,8.49993336442728,4.1822236209636,2.15623506123262,1.06461206063404,6.08953094452551,2.03856641014312,1.28812398067792,5.95453390975468,2.53103539774981,0.571890581771475,0.511795582622668,2.56763392820352,11.7735201732597,2.35484592059769,0.539617372749944,0.823611089208164,0.706874414074119,2.42618977887979,3.17020642346017,2.52755073743389,0,3.1682753652067,3.16950440270266,0.136499911407986,1.41405431953713,9.04064932961942,3.85955740482287,1.32687795048244,3.06915619677634,0.578775534266688,1.9676842561399,0.811641507850816,0.30982349809975,2.53526042279017,1.57752487424457,0.0982490410131212,1.426684205925,1.06428319221179,1.26664581178598,1.97576935775941,1.51789269506286,1.74967360122491,0,0,0,0.564862804660675,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.22896305723383,2.46043718681657,0.834245708559542,0,0,0,0,0,0,0,0.73254089635947,0,0,0,0,0,0,0,0.140669416410513,0.667852230137435,0,0,0.597743964753209,0.552567831062295,0,0,0,0,0,0,0,1.38100767891707,0,0,0,0.278304294485554,0,0,0,0,0,0,0,0,0,0.347249989866585,4.42870692906919,5.66803261539417,0,0.110579259931225,0.295547618953547,0.87754158861589,0.21787692703798,0,0.692552326534174,0.683652335082007,0,0,0,0,0.0915975934018623,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.442287822516696,0.611030144933625,0,0,0,0.471807930864739,0.802577647298789,0.937057782901357,0,0,0,1.57833761139756,0,0.30607276163049,1.95878396848313,0,0,0,0.661983911750998,0,0,0,0,0.173559738335131,0,0,1.22308667769421,0,0,0,0,0.387956065953678,0,0.677942222341597,0,0,0.886351143382302,0,0,1.49417096317547,0,0,0,0,0,0,0,0,0,0,0,0.600420288709789,0.136905378891993,0,0,0,1.11712960508902,1.83328339209347,3.58936512288407,0,0.858452096273142,1.56220020209311,1.2764859772478,1.80149941771202,0,0,0,0,0,0,0,0,0,0,0,0.2249738915515,0,0.485996453264197,0,0.788057072991982,0.629455057619977,0.105600336519406,0,0,2.1440859791201,0.662091970365432,0,0,0,0.979762080328227,0,0,0.340776043570843,0,1.17241786942466,0,0.129282956361551,0.26446520348538,0,0,0,0.628817220398664,0.414239055347196,0,0,0,0,0,0.7520696820681,0.306345576763462,0,0,0.886068179966986,0.244052529803926,0.1251909307065,0.573409195690071,0.110929051536852,0.18628920882415,0,0.74988244777264,0,0,0,0,0,2.98509605773748,0.467426619694449,5.54805861502613,2.65164207385125,3.77351852628863,2.66943366478961,2.51724075236616,6.04923695052956,4.19680441573507,5.47064054961645,1.11507737014592,0.449803112163605,1.39736661188633,2.48823724704513,0.53168342911599,0.521745061811734,0.751288044986092,0.380805212168795,3.25496586563729,1.63663793282303,0.429642228169954,2.78420255927096,0,0,4.12074846219351,1.34699795506368,0,0,0,0,0,0,0,0,0,0.657852148736121,0,0,0,0,0,0.303859956177382,0.967809053062115,0,0,0,0,0.245772908753719,0,0,0.426766918776564,0,0,5.52317850755522,0,0,0.127894371303652,1.40172254815686,0,0,0.678930119816101,0.637724760305049,0,1.11728983594649,1.27201740261367,0,0,1.76337971845342,0,2.11956442818316,0,0,0.205116364240755,0,0.484100767249525,0.161475645631851,0,0,0,0,0,0,0,0,4.73825068600321,0,0,0,0,0,0.472763092328763,1.56215619722769,0.413373593002368,0.380494861163441,0,0.548257766857182,0,0.175871244359621,0,0.535701835878287,0.336283722218824,0.606965604236632,0.227662191351298,0.177404740325278,0,0,0.815636795721981,0.394636641377094,0,0,0.863424021355654,4.08500533781605,0,0,0,0,1.1436247068265,0,0,0,5.61197955311177,0,0,0,0.430227358820278,0.118332000730565,0.0852134047591577,0.423387050190929,0,0,0,0,0,0,0.647428837187895,0.513314034281235,0,0,0,0,0,0,0,0,0.231522474323834,0,0,0.980593287015622,0,0,0,0.8453114551668,1.86919826156599,0,0,0,0,0,0,0,1.37618785021362,0,0,0.611923411718232,0,1.0580536810308,5.95192029066802,3.23522940041993,1.29787968637137,0,0,0.506794004045748,0,0,0,0,0.530450887527676,1.07185652062471,0,1.44806194206653,0.639701945702943,1.42838658878244,0.0645889098360061,0.124149428591716,0.224263725161227,0.827413057616144,1.0105859447911,0.217716747896961,1.02669990325584,0.134704106029175,0.645499848534087,1.66330178273007,0,0,0,0,0,1.71138021856013,1.62758471326295,0.665756774185513,0,0 | |||
|short_description=p5@PDE7B | |||
}} |
Revision as of 14:04, 22 January 2014
Short description: | p5@PDE7B |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_PDE7B_5end |
Coexpression cluster: | NA |
Association with transcript: | 14bp_to_uc003qgr.2_5end |
EntrezGene: | PDE7B |
HGNC: | 8792 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
muscle cell | 2.47e-25 | 55 |
muscle precursor cell | 1.12e-24 | 58 |
myoblast | 1.12e-24 | 58 |
multi-potent skeletal muscle stem cell | 1.12e-24 | 58 |
vascular associated smooth muscle cell | 7.21e-24 | 32 |
mesodermal cell | 2.49e-23 | 121 |
electrically responsive cell | 1.75e-21 | 61 |
electrically active cell | 1.75e-21 | 61 |
smooth muscle cell | 1.15e-20 | 43 |
smooth muscle myoblast | 1.15e-20 | 43 |
fibroblast | 7.98e-17 | 76 |
cardiocyte | 1.73e-13 | 16 |
aortic smooth muscle cell | 1.30e-11 | 10 |
multi fate stem cell | 6.96e-11 | 427 |
endothelial cell of vascular tree | 1.79e-10 | 24 |
somatic stem cell | 2.63e-10 | 433 |
endothelial cell | 1.16e-09 | 36 |
stem cell | 1.44e-09 | 441 |
skin fibroblast | 1.50e-09 | 23 |
blood vessel endothelial cell | 1.79e-08 | 18 |
embryonic blood vessel endothelial progenitor cell | 1.79e-08 | 18 |
meso-epithelial cell | 3.97e-08 | 45 |
endothelial cell of artery | 7.98e-08 | 9 |
embryonic cell | 1.93e-07 | 250 |
Ontology term | p-value | n |
---|---|---|
musculoskeletal system disease | 4.83e-07 | 5 |
myotonic disease | 4.83e-07 | 5 |
muscle tissue disease | 4.83e-07 | 5 |
myopathy | 4.83e-07 | 5 |