FFCP PHASE1:Hg19::chr6:148663894..148663959,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=23328 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=19182 | |||
|TSSclassifier=weak | |||
|UniProt=O94885 | |||
|association_with_transcript=165bp_to_ENST00000367467,NM_015278,uc003qme.1_5end | |||
|description=CAGE_peak_3_at_SASH1_5end | |||
|id=chr6:148663894..148663959,+ | |||
|ontology_enrichment_celltype=CL:0002057!7.81e-13!42;CL:0000860!1.28e-11!45;CL:0002139!1.70e-11!24;CL:0000115!3.53e-11!35;CL:0002194!5.93e-11!63;CL:0000576!5.93e-11!63;CL:0000040!5.93e-11!63;CL:0000559!5.93e-11!63;CL:0002009!7.07e-10!65;CL:0000071!3.00e-09!18;CL:0002546!3.00e-09!18;CL:0002078!3.46e-09!44;CL:0000839!2.11e-07!70;CL:0000557!4.27e-07!71 | |||
|ontology_enrichment_celltype_v019=CL:0000860;2.55e-12;33!CL:0002057;2.55e-12;33!CL:0002139;4.33e-12;24!CL:0000115;8.30e-11;36!CL:0000071;7.72e-10;18!CL:0000473;9.93e-10;39!CL:0000234;9.93e-10;39!CL:0000576;1.44e-09;48!CL:0002078;6.38e-07;45 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,5.05e-13,42;CL:0002057,5.05e-13,42;CL:0000473,2.77e-12,48;CL:0000234,2.77e-12,48;CL:0000115,5.70e-12,36;CL:0002194,7.16e-12,59;CL:0000576,7.16e-12,59;CL:0000040,7.16e-12,59;CL:0000559,7.16e-12,59;CL:0002139,9.91e-12,24;CL:0002009,1.23e-10,61;CL:0000071,1.98e-09,18;CL:0002546,1.98e-09,18;CL:0002078,2.59e-09,45;CL:0000839,5.03e-08,66;CL:0000557,1.42e-07,67;CL:0000213,6.23e-07,58;CL:0000215,6.23e-07,58 | |||
|ontology_enrichment_development_v019=CL:0002546;7.72e-10;18!CL:0002057;9.80e-10;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000468!2.17e-28!659;UBERON:0000467!6.19e-21!625;UBERON:0000480!1.55e-20!626;UBERON:0000062!4.99e-18!511;UBERON:0000922!1.78e-17!612;UBERON:0007023!1.82e-17!115;UBERON:0002050!1.92e-16!605;UBERON:0005423!1.92e-16!605;UBERON:0000923!4.87e-16!604;UBERON:0005291!4.87e-16!604;UBERON:0006598!4.87e-16!604;UBERON:0002532!4.87e-16!604;UBERON:0004111!8.85e-10!241;UBERON:0001986!3.00e-09!18;UBERON:0004638!3.00e-09!18;UBERON:0004852!3.00e-09!18;UBERON:0006914!1.19e-08!25;UBERON:0002346!3.41e-08!90;UBERON:0001049!4.08e-08!57;UBERON:0005068!4.08e-08!57;UBERON:0006241!4.08e-08!57;UBERON:0007135!4.08e-08!57;UBERON:0000477!4.51e-08!286;UBERON:0000025!4.56e-08!194;UBERON:0000487!5.12e-08!22;UBERON:0005743!6.59e-08!86;UBERON:0003075!1.35e-07!86;UBERON:0007284!1.35e-07!86;UBERON:0000073!1.52e-07!94;UBERON:0001016!1.52e-07!94;UBERON:0001017!1.89e-07!82;UBERON:0000955!4.94e-07!69;UBERON:0006238!4.94e-07!69;UBERON:0002616!7.21e-07!59;UBERON:0002405!8.04e-07!115 | |||
|ontology_enrichment_uberon_v019=UBERON:0004638;7.72e-10;18!UBERON:0001986;7.72e-10;18!UBERON:0004852;7.72e-10;18!UBERON:0006914;4.68e-09;25!UBERON:0000487;1.63e-08;22 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,1.99e-17,114;UBERON:0000922,2.83e-12,592;UBERON:0002050,1.91e-11,564;UBERON:0000923,2.20e-11,560;UBERON:0010316,2.20e-11,560;UBERON:0005291,2.20e-11,560;UBERON:0006598,2.20e-11,560;UBERON:0010317,2.20e-11,560;UBERON:0002532,2.20e-11,560;UBERON:0005423,3.16e-11,581;UBERON:0004638,1.98e-09,18;UBERON:0001986,1.98e-09,18;UBERON:0004852,1.98e-09,18;UBERON:0006914,8.11e-09,25;UBERON:0000487,3.61e-08,22;UBERON:0004111,5.13e-08,240;UBERON:0002346,8.05e-08,86;UBERON:0001049,8.86e-08,56;UBERON:0005068,8.86e-08,56;UBERON:0006241,8.86e-08,56;UBERON:0007135,8.86e-08,56;UBERON:0002405,1.41e-07,93;UBERON:0003075,3.21e-07,82;UBERON:0007284,3.21e-07,82;UBERON:0001434,4.94e-07,100;UBERON:0000073,5.47e-07,53;UBERON:0002616,5.47e-07,53;UBERON:0001017,6.67e-07,81 | |||
|phase1_expression=2.90685406832891,3.8538094300377,3.24195129420734,4.00293193412522,2.23480547213644,1.74467704820074,0,3.15859936713415,2.35067065379855,1.22866968250754,0.697801167972428,1.09220686065086,1.84636884759917,3.96052329472149,3.97676850873499,1.34465029290355,3.01347264011988,0.730310090387373,3.41552959153355,3.81675280038043,3.06001036866379,2.5076377718247,4.86601178122796,2.05311637609326,2.63639543149086,0,0,0,0.786728553697808,0.383829398097213,1.85779347979291,1.83884244895785,0.90361775633475,0.739508020333575,0,0,0,1.66198622559563,2.20598892217156,0.434021741431704,7.3892106499175,4.21061765824673,5.15151135268373,7.12451370019867,10.5805264232867,11.6440349370152,5.57829688573643,12.3350366406548,8.6717783850629,10.9323109082417,12.2957139133968,14.8983804829809,3.44745680736619,7.10033151942209,6.77132432971709,5.27078550719293,6.5497476013883,7.64059847113288,4.59125838556354,11.2325159476633,7.03270838378945,12.5343494070952,14.5608470063791,18.7538890234385,6.67481248845743,5.6738522469114,15.5705562248894,7.03496262718881,10.9511412868242,7.38442071997397,1.81619850790011,11.0483290796269,12.9749578850763,6.33765858935825,5.31510749912609,4.82214884669265,1.01095768031846,2.55300717830561,2.57160938715328,3.99017841237748,4.97291692997725,4.01861138282195,0,0,0,0.426730222566507,0,0,0,0.954053754535364,0,0,0,0,0,0.263384084775077,0,0,0.205601498999509,0.501559486172034,0,0,0,1.11410456885174,0,0,0,0.640456598628376,0.260118695119756,1.80881695064044,2.76350017785848,3.18783394308558,0,0,0,3.05935225283429,0,0.34362744548263,0,0,0,0,0.301150238155546,0.127986611154418,0,0,0,0,0,0,7.31420598941885,0.670700859703636,1.15076305659177,3.97583067623023,17.0454889616202,4.34539556882471,2.3858578411533,4.37971383272372,3.87592750372678,1.10864698731282,2.72287835648691,7.20384915237419,1.82147644146271,0.741568885568859,1.29818957461873,1.91542711029194,1.06366368415092,0,0,0,12.124506849369,5.16140757063675,6.59566953054429,15.8286223738723,8.80948816040802,8.52865930014209,10.0317583937669,24.5495921210862,24.9036383880697,14.3929863488808,2.01414658554573,5.32190474002959,3.1728067481262,16.5448386155641,10.5318453224629,10.5373679375214,13.4717623575702,8.55847251673249,13.7984973719295,21.833110170067,15.3889464901542,0,0,0,3.47880366186723,0.886413581652058,3.31022952033047,4.01571269048339,1.41867352879343,1.68203280042692,0,0.98667019366864,2.17847724779836,3.09834545760283,3.10577615915572,4.8434376846378,2.30470369792,0.234321431833797,1.24864030732128,2.85235910772225,0.747243402759005,0.822041490506354,0.647491777472526,0.842704840213491,1.02077085627447,2.7023549808589,3.09977343527296,3.56400857184616,2.96720315134268,1.82032272387605,2.15585442544872,1.17835279767846,1.12606667884768,1.38532057742091,3.95079858792754,1.83892677479412,3.60571341375832,0.680593098960126,7.5343646989322,3.63047560991565,1.48352330811693,3.30100205692843,2.67936576019941,7.72921620136887,4.46680455195816,4.55696097051419,3.70260619612555,8.58274832429989,2.57739716198438,3.71785930683267,6.74518225781567,2.92181084860157,2.54340888465731,3.09217365061275,2.18196896472668,1.43402297694502,3.65921118388786,2.78312513475119,3.36962434321603,2.38420426535352,1.7662459561294,2.91981887260664,0,2.57296375277154,0,1.85747171212792,3.60939740834793,0.473227200159376,0.505754070234305,0.241011029883482,0.772057809126758,0.653638332277218,0.71181185733329,0.943819157121151,0.784885860501384,0,5.90524363699719,2.80483547606892,2.057870056657,4.41026134156626,2.53510069643662,5.89696330006576,5.90789906681404,0,2.09080345523293,2.40194934417936,1.86575485194663,0,1.70899253099772,2.03694579348765,0,3.11980435583874,0,4.17349457910277,2.46558257895225,3.60916119402685,3.70388410061289,6.27838702374174,7.90204397959275,2.57545848628462,5.90920814609754,0.936017060556951,3.41851673264075,0,2.35174979478403,1.70130116690864,1.07470227243418,1.74380363108377,1.15014803749563,0.492663237895943,0,0.621984346622316,0.288239906833923,0.25248486685276,3.11139682031628,5.34783795781589,4.68869788840188,1.71072446022705,2.98199728839638,3.60411669412701,6.28818151787272,2.24262168690721,1.30788020649984,1.3200891447771,1.93907573636667,0,0,4.78688609852767,0,0.771622122786426,1.41849132023278,1.0656887160644,1.28680194292333,3.7983512377401,0.823240336780769,0.977208552881205,0.355391948742546,0,3.31583314765545,0,4.09889263846434,3.64871341923571,7.5338563714819,0,3.11512312139057,5.7430967917057,8.5582143024431,1.88215698667853,2.4657158706046,1.79060963239896,0,0,0,0.256686072559497,6.60646022978405,1.30139853857622,0.773288812777695,0.335032530668698,0,0,0,0,4.2942022101699,4.00136416847742,6.23909554509392,3.95144636908534,2.85486382075459,1.26161932027148,2.81139395982512,3.31040709700491,2.27407504055985,3.10419213877515,0,1.84369168541703,3.0409265063829,3.72022199179207,3.77457766191941,0.82707210449155,1.72571360654893,0.74709290462411,0.303127571446259,0,1.5119514666484,3.96972492510043,4.450397225353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| |||
|short_description=p3@SASH1 | |||
}} |
Revision as of 14:30, 22 January 2014
Short description: | p3@SASH1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_SASH1_5end |
Coexpression cluster: | NA |
Association with transcript: | 165bp_to_ENST00000367467, NM_015278, uc003qme.1_5end |
EntrezGene: | SASH1 |
HGNC: | 19182 |
UniProt: | O94885 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 5.05e-13 | 42 |
CD14-positive, CD16-negative classical monocyte | 5.05e-13 | 42 |
defensive cell | 2.77e-12 | 48 |
phagocyte | 2.77e-12 | 48 |
endothelial cell | 5.70e-12 | 36 |
monopoietic cell | 7.16e-12 | 59 |
monocyte | 7.16e-12 | 59 |
monoblast | 7.16e-12 | 59 |
promonocyte | 7.16e-12 | 59 |
endothelial cell of vascular tree | 9.91e-12 | 24 |
macrophage dendritic cell progenitor | 1.23e-10 | 61 |
blood vessel endothelial cell | 1.98e-09 | 18 |
embryonic blood vessel endothelial progenitor cell | 1.98e-09 | 18 |
meso-epithelial cell | 2.59e-09 | 45 |
myeloid lineage restricted progenitor cell | 5.03e-08 | 66 |
granulocyte monocyte progenitor cell | 1.42e-07 | 67 |
lining cell | 6.23e-07 | 58 |
barrier cell | 6.23e-07 | 58 |
Ontology term | p-value | n |
---|---|---|
adult organism | 1.99e-17 | 114 |
embryo | 2.83e-12 | 592 |
embryonic structure | 1.91e-11 | 564 |
germ layer | 2.20e-11 | 560 |
germ layer / neural crest | 2.20e-11 | 560 |
embryonic tissue | 2.20e-11 | 560 |
presumptive structure | 2.20e-11 | 560 |
germ layer / neural crest derived structure | 2.20e-11 | 560 |
epiblast (generic) | 2.20e-11 | 560 |
developing anatomical structure | 3.16e-11 | 581 |
blood vessel endothelium | 1.98e-09 | 18 |
endothelium | 1.98e-09 | 18 |
cardiovascular system endothelium | 1.98e-09 | 18 |
squamous epithelium | 8.11e-09 | 25 |
simple squamous epithelium | 3.61e-08 | 22 |
anatomical conduit | 5.13e-08 | 240 |
neurectoderm | 8.05e-08 | 86 |
neural tube | 8.86e-08 | 56 |
neural rod | 8.86e-08 | 56 |
future spinal cord | 8.86e-08 | 56 |
neural keel | 8.86e-08 | 56 |
immune system | 1.41e-07 | 93 |
neural plate | 3.21e-07 | 82 |
presumptive neural plate | 3.21e-07 | 82 |
skeletal system | 4.94e-07 | 100 |
regional part of nervous system | 5.47e-07 | 53 |
regional part of brain | 5.47e-07 | 53 |
central nervous system | 6.67e-07 | 81 |