FFCP PHASE1:Mm9::chr7:30088957..30088966,+: Difference between revisions
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{{FFCP|EntrezGene=29861|HGNC=|MCL_coexpression_id=22|UniProt=D3YY44|association_with_transcript=-3bp_to_ENSMUST00000108231_5end|description=CAGE_peak_6_at_Dpf1_5end|id=chr7:30088957..30088966,+|ontology_enrichment_celltype=CL:0000117!1.03e-14!23;CL:0000337!1.03e-14!23;CL:0000540!1.42e-14!33;CL:0000047!1.42e-14!33;CL:0000031!1.42e-14!33;CL:0000404!1.42e-14!33;CL:0002319!1.05e-13!43;CL:0000221!4.49e-13!44;CL:0000133!4.49e-13!44;CL:0000393!1.53e-11!39;CL:0000211!1.53e-11!39;CL:0000055!8.15e-11!50|ontology_enrichment_celltype_v019_2=CL:0000117,4.46e-33,23;CL:0000337,4.46e-33,23;CL:0000540,4.51e-22,33;CL:0000047,4.51e-22,33;CL:0000031,4.51e-22,33;CL:0000404,4.51e-22,33;CL:0002319,1.92e-18,43;CL:0000393,3.55e-18,39;CL:0000211,3.55e-18,39;CL:0000221,6.05e-18,44;CL:0000133,6.05e-18,44;CL:0002609,2.54e-13,6;CL:0002321,1.60e-11,70;CL:0002613,3.87e-11,3;CL:0000120,1.50e-10,3;CL:0002608,4.51e-10,3;CL:0000723,5.56e-08,91;CL:0000048,5.56e-08,91;CL:0002611,2.11e-07,2;CL:0000034,2.90e-07,97|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000073!1.10e-22!75;UBERON:0001016!1.10e-22!75;UBERON:0001017!3.06e-22!73;UBERON:0005743!3.06e-22!73;UBERON:0001049!1.68e-18!52;UBERON:0005068!1.68e-18!52;UBERON:0006241!1.68e-18!52;UBERON:0007135!1.68e-18!52;UBERON:0002346!1.35e-16!71;UBERON:0003075!1.35e-16!71;UBERON:0007284!1.35e-16!71;UBERON:0002020!2.40e-16!34;UBERON:0000955!3.23e-16!50;UBERON:0006238!3.23e-16!50;UBERON:0004121!4.00e-16!102;UBERON:0000924!4.00e-16!102;UBERON:0006601!4.00e-16!102;UBERON:0002616!1.46e-15!49;UBERON:0000033!4.44e-14!63;UBERON:0002791!1.06e-12!29;UBERON:0003528!1.06e-12!29;UBERON:0001893!1.06e-12!29;UBERON:0003056!1.71e-12!49;UBERON:0003080!1.87e-12!40;UBERON:0002780!6.40e-12!39;UBERON:0001890!6.40e-12!39;UBERON:0006240!6.40e-12!39;UBERON:0007811!1.89e-09!86;UBERON:0000153!2.76e-09!94;UBERON:0000956!3.28e-09!21;UBERON:0001869!3.28e-09!21;UBERON:0000203!3.28e-09!21;UBERON:0003076!4.40e-07!12;UBERON:0003057!4.40e-07!12|ontology_enrichment_uberon_v019_2=UBERON:0002020,1.44e-27,34;UBERON:0000073,4.27e-20,54;UBERON:0003528,1.68e-19,29;UBERON:0002791,1.68e-19,29;UBERON:0001893,1.68e-19,29;UBERON:0001017,2.82e-19,73;UBERON:0001049,7.06e-19,52;UBERON:0005068,7.06e-19,52;UBERON:0006241,7.06e-19,52;UBERON:0007135,7.06e-19,52;UBERON:0001016,1.21e-18,75;UBERON:0002346,1.29e-14,64;UBERON:0003075,1.29e-14,64;UBERON:0007284,1.29e-14,64;UBERON:0004121,8.80e-14,95;UBERON:0000924,8.80e-14,95;UBERON:0006601,8.80e-14,95;UBERON:0002780,8.97e-14,39;UBERON:0001890,8.97e-14,39;UBERON:0006240,8.97e-14,39;UBERON:0000956,1.34e-13,21;UBERON:0001869,1.34e-13,21;UBERON:0000203,1.34e-13,21;UBERON:0003080,2.33e-13,40;UBERON:0002616,4.71e-13,46;UBERON:0000955,1.04e-12,47;UBERON:0006238,1.04e-12,47;UBERON:0010371,2.44e-12,73;UBERON:0000369,2.21e-11,5;UBERON:0002435,2.21e-11,5;UBERON:0000204,2.21e-11,5;UBERON:0010082,2.21e-11,5;UBERON:0002619,6.95e-11,17;UBERON:0003056,2.18e-10,49;UBERON:0001948,2.31e-10,5;UBERON:0002315,2.31e-10,5;UBERON:0010314,5.38e-09,92;UBERON:0002240,1.19e-08,6;UBERON:0005174,1.19e-08,6;UBERON:0001137,1.19e-08,6;UBERON:0001954,1.64e-07,7;UBERON:0003022,1.64e-07,7;UBERON:0002421,1.64e-07,7;UBERON:0000349,1.64e-07,7;UBERON:0002600,1.64e-07,7;UBERON:0002256,2.11e-07,2;UBERON:0002420,4.08e-07,8;UBERON:0007245,4.08e-07,8;UBERON:0010009,4.08e-07,8;UBERON:0010011,4.08e-07,8;UBERON:0000454,4.08e-07,8|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.255129870453209,0.0992909512008853,0,0,0,0,0,0,0,0,0,1.27006134691926,2.46025915033828,0,0,0,0,0,0,0,0,0,0,0,0,0,1.56478268869608,0.218025156380447,0.439372365468944,0,0.279972843250725,0,0,0,0,0.514518872071894,0,0,2.22548106945558,1.05798195854407,4.43681982454325,0,0.889294796111139,0,0,0,0,0,1.45165457231869,2.43010688997043,0.841299845405528,1.71390590642282,1.76694832761291,1.22490799214954,1.72521847832825,1.83843757322004,1.10115880999389,0.127687338085188,0.46081959976873,1.97829431595291,2.28719109006024,3.64639359389732,0,0.56276261003168,0.15279824777681,0.883885756421003,1.42371680799103,1.67759501242771,0.151452386666368,0.226714680320357,0,0,0,0,0,0,0,0,0,0,0,0,2.54805239706646,0,0,0,0.505524445014783,0.22836775943812,0,0,0,0,0,0,0.117588707135705,0,0,0.144599356919912,0,0.485300549842228,0,0,0,0.292780797011547,0.628340120440365,0,0,0,0,0.599162557619291,0.915001205637253,2.1361239859187,0.869121600961382,1.27857728665165,0.41557608911912,0.324482526135515,0,0,0,0,0.260240885925407,0.459804208866946,0,0.30140963567143,0,0.12811372028485,0.281105173679186,0.258703370739016,0.215567992932842,0.756424320671277,0.175951124163949,0,0,0,0.205782136407943,0.199034266818493,0,0,0,0,0,0,0,0,0.154267112887378,0,0,0,0,0,0,0,0,0,0,1.85228302282712,0,0,0.213288250535234,0,0.257734922644187,0.201683524623343,0.22237804384487,0.190225626112559,0,0,0,0,0,0,0,0,0.189667900953082,0,0,0.203651327845314,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.184753190166605,0.568474235311454,0.325929952884052,0.169745085775188,0,0,0,0,0,0.221464689648775,0,0,0,0,0,0,0,0,0.160550589987792,0.117211686592203,0.163934945376675,0,0.94652465824877,0.390438744296638,0.430846795465598,0.238968797952552,0.222798674082394,0.283076530788832,0.404810701674894,0,0,0.963963949265421,0,0.178065603667255,0,0,0,0,0,0,0.295301892880773,0,0.258428293168221,0,0,0,0,0,0,0.18006109403131,0.129358683782755,0.214337035031592,0.177340233642274,0,0.164549020602121,0,0,0,0,0,0.161464426695906,0,0,0.164140899745061,0,0.556275906031529,0,0,0,0,0,0,0,0.139951452323658,0,0,0.158167996790568,0.203319467126849,0.108005340821801,0,0,0,0.0826534557253359,0,0,0,0,0,0.330916980914195,0,0.129159823477731,0,0,0,0.419437377702843,0.483168241652012,0,0.316011120628178,0.202725215290164,0,0,0.179026695667481,0.198681354781265,0,0,0,0,0.100826185136841,0,0.0962118416403295,0,0,0.221985953374065,0.179427713218951,0.671538465456314,0,0,0,0,0,1.12950368523413,0,2.29158205375759,0.68741272937475,1.37016503954128,0.755393897389701,0.675022500231806,0.900642406448441,1.81256963593682,0,0.207574695168353,0.798049746802062,0.341467211508268,0.486213434136588,0.209613162627982,0.551530525350042,0.44449345560323,0.412070114477788,0,0.505394423527595,0,0.188626341386076,0.280924522409647,0.448176066834085,0.516919220600519,1.42888107384922,0.347652977834566,0.192909220463705,0,0,0,0,0.476872379894642,0.145346416632329,0.0941093804153306,0.169229215783353,0.548783918618318,0.263069711437843,0.407412341537585,0,0.593175090620871,0.0985044823755635,0.409231043169689,0.619747364743864,0.771626443924566,0.499621155875892,0,0,0.191288332068843,0.220591419119515,0|short_description=p6@Dpf1}} | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:29861 | |||
|HGNC= | |||
|MCL_coexpression_id=22 | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:D3YY44 | |||
|association_with_transcript=-3bp_to_ENSMUST00000108231_5end | |||
|cluster_id=chr7:30088957..30088966,+ | |||
|description=CAGE_peak_6_at_Dpf1_5end | |||
|id=chr7:30088957..30088966,+ | |||
|ontology_enrichment_celltype=CL:0000117!1.03e-14!23;CL:0000337!1.03e-14!23;CL:0000540!1.42e-14!33;CL:0000047!1.42e-14!33;CL:0000031!1.42e-14!33;CL:0000404!1.42e-14!33;CL:0002319!1.05e-13!43;CL:0000221!4.49e-13!44;CL:0000133!4.49e-13!44;CL:0000393!1.53e-11!39;CL:0000211!1.53e-11!39;CL:0000055!8.15e-11!50 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,4.46e-33,23;CL:0000337,4.46e-33,23;CL:0000540,4.51e-22,33;CL:0000047,4.51e-22,33;CL:0000031,4.51e-22,33;CL:0000404,4.51e-22,33;CL:0002319,1.92e-18,43;CL:0000393,3.55e-18,39;CL:0000211,3.55e-18,39;CL:0000221,6.05e-18,44;CL:0000133,6.05e-18,44;CL:0002609,2.54e-13,6;CL:0002321,1.60e-11,70;CL:0002613,3.87e-11,3;CL:0000120,1.50e-10,3;CL:0002608,4.51e-10,3;CL:0000723,5.56e-08,91;CL:0000048,5.56e-08,91;CL:0002611,2.11e-07,2;CL:0000034,2.90e-07,97 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!1.10e-22!75;UBERON:0001016!1.10e-22!75;UBERON:0001017!3.06e-22!73;UBERON:0005743!3.06e-22!73;UBERON:0001049!1.68e-18!52;UBERON:0005068!1.68e-18!52;UBERON:0006241!1.68e-18!52;UBERON:0007135!1.68e-18!52;UBERON:0002346!1.35e-16!71;UBERON:0003075!1.35e-16!71;UBERON:0007284!1.35e-16!71;UBERON:0002020!2.40e-16!34;UBERON:0000955!3.23e-16!50;UBERON:0006238!3.23e-16!50;UBERON:0004121!4.00e-16!102;UBERON:0000924!4.00e-16!102;UBERON:0006601!4.00e-16!102;UBERON:0002616!1.46e-15!49;UBERON:0000033!4.44e-14!63;UBERON:0002791!1.06e-12!29;UBERON:0003528!1.06e-12!29;UBERON:0001893!1.06e-12!29;UBERON:0003056!1.71e-12!49;UBERON:0003080!1.87e-12!40;UBERON:0002780!6.40e-12!39;UBERON:0001890!6.40e-12!39;UBERON:0006240!6.40e-12!39;UBERON:0007811!1.89e-09!86;UBERON:0000153!2.76e-09!94;UBERON:0000956!3.28e-09!21;UBERON:0001869!3.28e-09!21;UBERON:0000203!3.28e-09!21;UBERON:0003076!4.40e-07!12;UBERON:0003057!4.40e-07!12 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002020,1.44e-27,34;UBERON:0000073,4.27e-20,54;UBERON:0003528,1.68e-19,29;UBERON:0002791,1.68e-19,29;UBERON:0001893,1.68e-19,29;UBERON:0001017,2.82e-19,73;UBERON:0001049,7.06e-19,52;UBERON:0005068,7.06e-19,52;UBERON:0006241,7.06e-19,52;UBERON:0007135,7.06e-19,52;UBERON:0001016,1.21e-18,75;UBERON:0002346,1.29e-14,64;UBERON:0003075,1.29e-14,64;UBERON:0007284,1.29e-14,64;UBERON:0004121,8.80e-14,95;UBERON:0000924,8.80e-14,95;UBERON:0006601,8.80e-14,95;UBERON:0002780,8.97e-14,39;UBERON:0001890,8.97e-14,39;UBERON:0006240,8.97e-14,39;UBERON:0000956,1.34e-13,21;UBERON:0001869,1.34e-13,21;UBERON:0000203,1.34e-13,21;UBERON:0003080,2.33e-13,40;UBERON:0002616,4.71e-13,46;UBERON:0000955,1.04e-12,47;UBERON:0006238,1.04e-12,47;UBERON:0010371,2.44e-12,73;UBERON:0000369,2.21e-11,5;UBERON:0002435,2.21e-11,5;UBERON:0000204,2.21e-11,5;UBERON:0010082,2.21e-11,5;UBERON:0002619,6.95e-11,17;UBERON:0003056,2.18e-10,49;UBERON:0001948,2.31e-10,5;UBERON:0002315,2.31e-10,5;UBERON:0010314,5.38e-09,92;UBERON:0002240,1.19e-08,6;UBERON:0005174,1.19e-08,6;UBERON:0001137,1.19e-08,6;UBERON:0001954,1.64e-07,7;UBERON:0003022,1.64e-07,7;UBERON:0002421,1.64e-07,7;UBERON:0000349,1.64e-07,7;UBERON:0002600,1.64e-07,7;UBERON:0002256,2.11e-07,2;UBERON:0002420,4.08e-07,8;UBERON:0007245,4.08e-07,8;UBERON:0010009,4.08e-07,8;UBERON:0010011,4.08e-07,8;UBERON:0000454,4.08e-07,8 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.255129870453209,0.0992909512008853,0,0,0,0,0,0,0,0,0,1.27006134691926,2.46025915033828,0,0,0,0,0,0,0,0,0,0,0,0,0,1.56478268869608,0.218025156380447,0.439372365468944,0,0.279972843250725,0,0,0,0,0.514518872071894,0,0,2.22548106945558,1.05798195854407,4.43681982454325,0,0.889294796111139,0,0,0,0,0,1.45165457231869,2.43010688997043,0.841299845405528,1.71390590642282,1.76694832761291,1.22490799214954,1.72521847832825,1.83843757322004,1.10115880999389,0.127687338085188,0.46081959976873,1.97829431595291,2.28719109006024,3.64639359389732,0,0.56276261003168,0.15279824777681,0.883885756421003,1.42371680799103,1.67759501242771,0.151452386666368,0.226714680320357,0,0,0,0,0,0,0,0,0,0,0,0,2.54805239706646,0,0,0,0.505524445014783,0.22836775943812,0,0,0,0,0,0,0.117588707135705,0,0,0.144599356919912,0,0.485300549842228,0,0,0,0.292780797011547,0.628340120440365,0,0,0,0,0.599162557619291,0.915001205637253,2.1361239859187,0.869121600961382,1.27857728665165,0.41557608911912,0.324482526135515,0,0,0,0,0.260240885925407,0.459804208866946,0,0.30140963567143,0,0.12811372028485,0.281105173679186,0.258703370739016,0.215567992932842,0.756424320671277,0.175951124163949,0,0,0,0.205782136407943,0.199034266818493,0,0,0,0,0,0,0,0,0.154267112887378,0,0,0,0,0,0,0,0,0,0,1.85228302282712,0,0,0.213288250535234,0,0.257734922644187,0.201683524623343,0.22237804384487,0.190225626112559,0,0,0,0,0,0,0,0,0.189667900953082,0,0,0.203651327845314,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.184753190166605,0.568474235311454,0.325929952884052,0.169745085775188,0,0,0,0,0,0.221464689648775,0,0,0,0,0,0,0,0,0.160550589987792,0.117211686592203,0.163934945376675,0,0.94652465824877,0.390438744296638,0.430846795465598,0.238968797952552,0.222798674082394,0.283076530788832,0.404810701674894,0,0,0.963963949265421,0,0.178065603667255,0,0,0,0,0,0,0.295301892880773,0,0.258428293168221,0,0,0,0,0,0,0.18006109403131,0.129358683782755,0.214337035031592,0.177340233642274,0,0.164549020602121,0,0,0,0,0,0.161464426695906,0,0,0.164140899745061,0,0.556275906031529,0,0,0,0,0,0,0,0.139951452323658,0,0,0.158167996790568,0.203319467126849,0.108005340821801,0,0,0,0.0826534557253359,0,0,0,0,0,0.330916980914195,0,0.129159823477731,0,0,0,0.419437377702843,0.483168241652012,0,0.316011120628178,0.202725215290164,0,0,0.179026695667481,0.198681354781265,0,0,0,0,0.100826185136841,0,0.0962118416403295,0,0,0.221985953374065,0.179427713218951,0.671538465456314,0,0,0,0,0,1.12950368523413,0,2.29158205375759,0.68741272937475,1.37016503954128,0.755393897389701,0.675022500231806,0.900642406448441,1.81256963593682,0,0.207574695168353,0.798049746802062,0.341467211508268,0.486213434136588,0.209613162627982,0.551530525350042,0.44449345560323,0.412070114477788,0,0.505394423527595,0,0.188626341386076,0.280924522409647,0.448176066834085,0.516919220600519,1.42888107384922,0.347652977834566,0.192909220463705,0,0,0,0,0.476872379894642,0.145346416632329,0.0941093804153306,0.169229215783353,0.548783918618318,0.263069711437843,0.407412341537585,0,0.593175090620871,0.0985044823755635,0.409231043169689,0.619747364743864,0.771626443924566,0.499621155875892,0,0,0.191288332068843,0.220591419119515,0 | |||
|short_description=p6@Dpf1 | |||
}} |
Revision as of 00:09, 5 August 2015
Short description: | p6@Dpf1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_6_at_Dpf1_5end |
Coexpression cluster: | MCL_coexpression_mm9:22 |
Association with transcript: | -3bp_to_ENSMUST00000108231_5end |
EntrezGene: | 29861 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 4.46e-33 | 23 |
neuroblast (sensu Vertebrata) | 4.46e-33 | 23 |
neuron | 4.51e-22 | 33 |
neuronal stem cell | 4.51e-22 | 33 |
neuroblast | 4.51e-22 | 33 |
electrically signaling cell | 4.51e-22 | 33 |
neural cell | 1.92e-18 | 43 |
electrically responsive cell | 3.55e-18 | 39 |
electrically active cell | 3.55e-18 | 39 |
ectodermal cell | 6.05e-18 | 44 |
neurectodermal cell | 6.05e-18 | 44 |
neuron of cerebral cortex | 2.54e-13 | 6 |
embryonic cell | 1.60e-11 | 70 |
striatum neuron | 3.87e-11 | 3 |
granule cell | 1.50e-10 | 3 |
hippocampal neuron | 4.51e-10 | 3 |
somatic stem cell | 5.56e-08 | 91 |
multi fate stem cell | 5.56e-08 | 91 |
neuron of the dorsal spinal cord | 2.11e-07 | 2 |
stem cell | 2.90e-07 | 97 |