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MCL coexpression mm9:3674

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Phase1 CAGE Peaks

 Short description
Mm9::chr8:35209786..35209806,-p2@Leprotl1
Mm9::chr8:35209807..35209822,-p3@Leprotl1
Mm9::chr8:35209828..35209864,-p1@Leprotl1


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data


no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:





Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>


Uber Anatomy
Ontology termp-valuen
nervous system3.31e-1875
central nervous system1.83e-1773
ectoderm-derived structure1.68e-1395
ectoderm1.68e-1395
presumptive ectoderm1.68e-1395
regional part of nervous system3.05e-1354
neural tube5.91e-1252
neural rod5.91e-1252
future spinal cord5.91e-1252
neural keel5.91e-1252
brain1.42e-1047
future brain1.42e-1047
regional part of brain1.60e-1046
neurectoderm6.03e-1064
neural plate6.03e-1064
presumptive neural plate6.03e-1064
gray matter1.96e-0934
organ system subdivision4.93e-09194
brain grey matter2.00e-0829
regional part of telencephalon2.00e-0829
telencephalon2.00e-0829
organ part2.71e-0899
anterior neural tube3.35e-0840
ecto-epithelium4.12e-0873
regional part of forebrain7.32e-0839
forebrain7.32e-0839
future forebrain7.32e-0839
anatomical system7.58e-08308
anatomical group7.58e-08308
anatomical cluster7.90e-08244
organ segment5.08e-0735


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data


Novel motifs




JASPAR motifs


Motifs-log10(p-value)

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