FF:11352-117H2: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON: | |DRA_sample_Accession=CAGE@SAMD00005458 | ||
|ancestors_in_cell_lineage_facet=CL:0000000 | |DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005458 | ||
|accession_numbers=CAGE;DRX008374;DRR009246;DRZ000671;DRZ002056;DRZ012021;DRZ013406 | |||
|accession_numbers_RNASeq=sRNA-Seq;DRX037243;DRR041609;DRZ007251 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0004121,UBERON:0011216,UBERON:0000061,UBERON:0000465,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0010317,UBERON:0001017,UBERON:0001016 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000047,CL:0000003,CL:0000723,CL:0000048,CL:0000548,CL:0002371,CL:0002319,CL:0000255,CL:0000034 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000120 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr14:29235961..29236008,+!p1@FOXG1!2.55!357.88!FOXG1;;chr17:37764128..37764258,-!p1@NEUROD2!2.47!294.12!NEUROD2;;chr7:31380292..31380351,-!p1@NEUROD6!2.38!238.16!NEUROD6;;chr2:105470562..105470582,+!p@chr2:105470562..105470582,+!2.37!232.95!POU3F3;;chrX:25034067..25034088,-!p1@ARX!2.17!148.36!ARX;;chr14:29236269..29236285,+!p3@FOXG1!2.10!123.63!FOXG1;;chr14:29236301..29236317,+!p5@FOXG1!2.10!123.63!FOXG1;;chr2:162272785..162272836,+!p1@TBR1!2.04!108.02!TBR1;;chr1:244214577..244214593,+!p1@ZNF238!2.01!101.51!ZNF238;;chr1:151032922..151032951,+!p2@MLLT11!1.98!152.26!MLLT11;;chr2:105470536..105470556,+!p@chr2:105470536..105470556,+!1.95!88.50!POU3F3;;chr3:181429704..181429722,+!p1@SOX2!1.95!87.19!SOX2;;chr2:200322229..200322251,-!p3@SATB2!1.94!85.89!SATB2;;chr14:29234581..29234601,+!p2@FOXG1!1.94!85.89!FOXG1;;chr19:13134772..13134822,+!p2@NFIX!1.92!118.43!NFIX;;chr7:100065686..100065701,-!p2@TSC22D4!1.91!79.39!TSC22D4;;chr4:81118647..81118666,+!p1@PRDM8!1.86!93.70!PRDM8;;chr2:162272889..162272915,+!p2@TBR1!1.84!68.97!TBR1;;chr16:51185172..51185197,-!p1@SALL1!1.82!65.07!SALL1;;chr9:126774018..126774055,+!p1@LHX2!1.81!63.77!LHX2;;chr4:113437332..113437337,-!p1@NEUROG2!1.79!61.17!NEUROG2;;chr4:57547454..57547469,-!p1@HOPX!1.78!59.86!HOPX;;chr20:20348740..20348757,+!p1@INSM1!1.78!59.86!INSM1;;chr3:181429741..181429767,+!p2@SOX2!1.77!57.26!SOX2;;chr14:33403881..33403924,+!p1@NPAS3!1.72!52.06!NPAS3;;chr11:31832658..31832681,-!p1@PAX6!1.70!49.45!PAX6;;chr2:200322723..200322739,-!p6@SATB2!1.70!49.45!SATB2;;chr2:5832508..5832524,+!p1@SOX11!1.67!45.55!SOX11;;chr9:14308004..14308041,-!p14@NFIB!1.67!45.55!NFIB;;chr2:16080659..16080685,+!p1@MYCN!1.66!44.25!MYCN;;chr9:126773880..126773895,+!p2@LHX2!1.64!42.95!LHX2;;chr1:151032860..151032918,+!p1@MLLT11!1.63!472.41!MLLT11;;chr2:166326200..166326216,+!p1@CSRNP3!1.63!59.86!CSRNP3;;chr2:2334997..2335053,-!p1@MYT1L!1.62!40.34!MYT1L;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!1.62!40.34!PEG3;;chr12:103351444..103351461,+!p1@ASCL1!1.60!39.04!ASCL1;;chr5:88178983..88179012,-!p1@MEF2C!1.58!271.99!MEF2C;;chr7:96654133..96654150,-!p1@DLX5!1.57!36.44!DLX5;;chr2:182545234..182545252,-!p1@NEUROD1!1.57!36.44!NEUROD1;;chrX:84498989..84499003,+!p1@ZNF711!1.56!48.15!ZNF711;;chr2:172967621..172967637,-!p1@DLX2!1.54!87.19!DLX2;;chr9:126774058..126774081,+!p3@LHX2!1.54!33.84!LHX2;;chr19:38720294..38720348,-!p1@DPF1!1.51!39.04!DPF1;;chr8:40755333..40755352,-!p1@ZMAT4!1.51!31.23!ZMAT4;;chr11:31832862..31832884,-!p2@PAX6!1.49!29.93!PAX6;;chr12:24102576..24102623,-!p2@SOX5!1.49!29.93!SOX5;;chr14:73360799..73360817,-!p1@DPF3!1.48!97.60!DPF3;;chr9:77112244..77112262,+!p1@RORB!1.48!32.53!RORB;;chrX:82763292..82763317,+!p1@POU3F4!1.47!28.63!POU3F4;;chr14:29237009..29237049,+!p4@FOXG1!1.47!28.63!FOXG1;;chr6:21594206..21594221,+!p15@SOX4!1.47!28.63!SOX4;;chr19:13135582..13135600,+!p3@NFIX!1.45!27.33!NFIX;;chr2:166428839..166428859,+!p2@CSRNP3!1.45!27.33!CSRNP3;;chr2:5832493..5832507,+!p2@SOX11!1.45!27.33!SOX11;;chr9:14314131..14314147,-!p2@NFIB!1.44!144.46!NFIB;;chr2:105470614..105470625,+!p@chr2:105470614..105470625,+!1.43!26.03!POU3F3;;chr2:200322259..200322280,-!p5@SATB2!1.43!26.03!SATB2;;chr1:151032957..151032968,+!p7@MLLT11!1.43!26.03!MLLT11;;chr6:99282592..99282616,+!p3@POU3F2!1.41!24.73!POU3F2;;chr2:200322654..200322707,-!p2@SATB2!1.40!35.14!SATB2;;chr17:70117153..70117174,+!p1@SOX9!1.39!235.55!SOX9;;chr18:56532100..56532130,+!p1@ZNF532!1.39!42.95!ZNF532;;chr1:214161272..214161322,+!p1@PROX1!1.39!32.53!PROX1;;chr15:80696703..80696754,+!p1@ARNT2!1.39!31.23!ARNT2;;chr2:145275982..145276003,-!p7@ZEB2!1.39!23.43!ZEB2;;chr13:72441315..72441454,-!p1@DACH1!1.36!42.95!DACH1;;chr1:2461692..2461710,-!p1@HES5!1.36!22.12!HES5;;chr2:2335109..2335134,-!p2@MYT1L!1.36!22.12!MYT1L;;chr6:19837592..19837621,+!p1@ID4!1.35!126.24!ID4;;chr5:178368186..178368238,+!p1@ZNF454!1.35!37.74!ZNF454;;chrX:84499081..84499115,+!p2@ZNF711!1.35!31.23!ZNF711;;chr15:57511609..57511651,+!p2@TCF12!1.34!35.14!TCF12;;chr18:53068911..53068935,-!p4@TCF4!1.34!23.43!TCF4;;chr2:63277948..63277974,+!p1@OTX1!1.34!20.82!OTX1;;chr1:244214611..244214624,+!p4@ZNF238!1.34!20.82!ZNF238;;chr9:109625401..109625458,+!p1@ZNF462!1.32!52.06!ZNF462;;chr1:23696348..23696363,-!p4@ZNF436!1.32!22.12!ZNF436;;chr14:58798013..58798071,+!p2@ARID4A!1.31!19.52!ARID4A;;chr2:105470599..105470610,+!p@chr2:105470599..105470610,+!1.31!19.52!POU3F3;;chr2:200320768..200320800,-!p4@SATB2!1.31!19.52!SATB2;;chr15:37392724..37392757,-!p1@MEIS2!1.28!81.99!MEIS2;;chr9:14313893..14313908,-!p7@NFIB!1.28!26.03!NFIB;;chr2:162272716..162272753,+!p3@TBR1!1.28!18.22!TBR1;;chr18:53069419..53069450,-!p34@TCF4!1.28!18.22!TCF4;;chr2:145277882..145277967,-!p3@ZEB2!1.27!29.93!ZEB2;;chr2:63277978..63277995,+!p2@OTX1!1.25!16.92!OTX1;;chr8:65492756..65492768,+!p2@BHLHE22!1.25!16.92!BHLHE22;;chr18:53089453..53089482,-!p11@TCF4!1.25!16.92!TCF4;;chr10:119302232..119302265,+!p1@EMX2!1.25!16.92!EMX2;;chr3:141105705..141105770,+!p4@ZBTB38!1.23!19.52!ZBTB38;;chr2:166428861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| |expression_enrichment_score=chr14:29235961..29236008,+!p1@FOXG1!2.55!357.88!FOXG1;;chr17:37764128..37764258,-!p1@NEUROD2!2.47!294.12!NEUROD2;;chr7:31380292..31380351,-!p1@NEUROD6!2.38!238.16!NEUROD6;;chr2:105470562..105470582,+!p@chr2:105470562..105470582,+!2.37!232.95!POU3F3;;chrX:25034067..25034088,-!p1@ARX!2.17!148.36!ARX;;chr14:29236269..29236285,+!p3@FOXG1!2.10!123.63!FOXG1;;chr14:29236301..29236317,+!p5@FOXG1!2.10!123.63!FOXG1;;chr2:162272785..162272836,+!p1@TBR1!2.04!108.02!TBR1;;chr1:244214577..244214593,+!p1@ZNF238!2.01!101.51!ZNF238;;chr1:151032922..151032951,+!p2@MLLT11!1.98!152.26!MLLT11;;chr2:105470536..105470556,+!p@chr2:105470536..105470556,+!1.95!88.50!POU3F3;;chr3:181429704..181429722,+!p1@SOX2!1.95!87.19!SOX2;;chr2:200322229..200322251,-!p3@SATB2!1.94!85.89!SATB2;;chr14:29234581..29234601,+!p2@FOXG1!1.94!85.89!FOXG1;;chr19:13134772..13134822,+!p2@NFIX!1.92!118.43!NFIX;;chr7:100065686..100065701,-!p2@TSC22D4!1.91!79.39!TSC22D4;;chr4:81118647..81118666,+!p1@PRDM8!1.86!93.70!PRDM8;;chr2:162272889..162272915,+!p2@TBR1!1.84!68.97!TBR1;;chr16:51185172..51185197,-!p1@SALL1!1.82!65.07!SALL1;;chr9:126774018..126774055,+!p1@LHX2!1.81!63.77!LHX2;;chr4:113437332..113437337,-!p1@NEUROG2!1.79!61.17!NEUROG2;;chr4:57547454..57547469,-!p1@HOPX!1.78!59.86!HOPX;;chr20:20348740..20348757,+!p1@INSM1!1.78!59.86!INSM1;;chr3:181429741..181429767,+!p2@SOX2!1.77!57.26!SOX2;;chr14:33403881..33403924,+!p1@NPAS3!1.72!52.06!NPAS3;;chr11:31832658..31832681,-!p1@PAX6!1.70!49.45!PAX6;;chr2:200322723..200322739,-!p6@SATB2!1.70!49.45!SATB2;;chr2:5832508..5832524,+!p1@SOX11!1.67!45.55!SOX11;;chr9:14308004..14308041,-!p14@NFIB!1.67!45.55!NFIB;;chr2:16080659..16080685,+!p1@MYCN!1.66!44.25!MYCN;;chr9:126773880..126773895,+!p2@LHX2!1.64!42.95!LHX2;;chr1:151032860..151032918,+!p1@MLLT11!1.63!472.41!MLLT11;;chr2:166326200..166326216,+!p1@CSRNP3!1.63!59.86!CSRNP3;;chr2:2334997..2335053,-!p1@MYT1L!1.62!40.34!MYT1L;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!1.62!40.34!PEG3;;chr12:103351444..103351461,+!p1@ASCL1!1.60!39.04!ASCL1;;chr5:88178983..88179012,-!p1@MEF2C!1.58!271.99!MEF2C;;chr7:96654133..96654150,-!p1@DLX5!1.57!36.44!DLX5;;chr2:182545234..182545252,-!p1@NEUROD1!1.57!36.44!NEUROD1;;chrX:84498989..84499003,+!p1@ZNF711!1.56!48.15!ZNF711;;chr2:172967621..172967637,-!p1@DLX2!1.54!87.19!DLX2;;chr9:126774058..126774081,+!p3@LHX2!1.54!33.84!LHX2;;chr19:38720294..38720348,-!p1@DPF1!1.51!39.04!DPF1;;chr8:40755333..40755352,-!p1@ZMAT4!1.51!31.23!ZMAT4;;chr11:31832862..31832884,-!p2@PAX6!1.49!29.93!PAX6;;chr12:24102576..24102623,-!p2@SOX5!1.49!29.93!SOX5;;chr14:73360799..73360817,-!p1@DPF3!1.48!97.60!DPF3;;chr9:77112244..77112262,+!p1@RORB!1.48!32.53!RORB;;chrX:82763292..82763317,+!p1@POU3F4!1.47!28.63!POU3F4;;chr14:29237009..29237049,+!p4@FOXG1!1.47!28.63!FOXG1;;chr6:21594206..21594221,+!p15@SOX4!1.47!28.63!SOX4;;chr19:13135582..13135600,+!p3@NFIX!1.45!27.33!NFIX;;chr2:166428839..166428859,+!p2@CSRNP3!1.45!27.33!CSRNP3;;chr2:5832493..5832507,+!p2@SOX11!1.45!27.33!SOX11;;chr9:14314131..14314147,-!p2@NFIB!1.44!144.46!NFIB;;chr2:105470614..105470625,+!p@chr2:105470614..105470625,+!1.43!26.03!POU3F3;;chr2:200322259..200322280,-!p5@SATB2!1.43!26.03!SATB2;;chr1:151032957..151032968,+!p7@MLLT11!1.43!26.03!MLLT11;;chr6:99282592..99282616,+!p3@POU3F2!1.41!24.73!POU3F2;;chr2:200322654..200322707,-!p2@SATB2!1.40!35.14!SATB2;;chr17:70117153..70117174,+!p1@SOX9!1.39!235.55!SOX9;;chr18:56532100..56532130,+!p1@ZNF532!1.39!42.95!ZNF532;;chr1:214161272..214161322,+!p1@PROX1!1.39!32.53!PROX1;;chr15:80696703..80696754,+!p1@ARNT2!1.39!31.23!ARNT2;;chr2:145275982..145276003,-!p7@ZEB2!1.39!23.43!ZEB2;;chr13:72441315..72441454,-!p1@DACH1!1.36!42.95!DACH1;;chr1:2461692..2461710,-!p1@HES5!1.36!22.12!HES5;;chr2:2335109..2335134,-!p2@MYT1L!1.36!22.12!MYT1L;;chr6:19837592..19837621,+!p1@ID4!1.35!126.24!ID4;;chr5:178368186..178368238,+!p1@ZNF454!1.35!37.74!ZNF454;;chrX:84499081..84499115,+!p2@ZNF711!1.35!31.23!ZNF711;;chr15:57511609..57511651,+!p2@TCF12!1.34!35.14!TCF12;;chr18:53068911..53068935,-!p4@TCF4!1.34!23.43!TCF4;;chr2:63277948..63277974,+!p1@OTX1!1.34!20.82!OTX1;;chr1:244214611..244214624,+!p4@ZNF238!1.34!20.82!ZNF238;;chr9:109625401..109625458,+!p1@ZNF462!1.32!52.06!ZNF462;;chr1:23696348..23696363,-!p4@ZNF436!1.32!22.12!ZNF436;;chr14:58798013..58798071,+!p2@ARID4A!1.31!19.52!ARID4A;;chr2:105470599..105470610,+!p@chr2:105470599..105470610,+!1.31!19.52!POU3F3;;chr2:200320768..200320800,-!p4@SATB2!1.31!19.52!SATB2;;chr15:37392724..37392757,-!p1@MEIS2!1.28!81.99!MEIS2;;chr9:14313893..14313908,-!p7@NFIB!1.28!26.03!NFIB;;chr2:162272716..162272753,+!p3@TBR1!1.28!18.22!TBR1;;chr18:53069419..53069450,-!p34@TCF4!1.28!18.22!TCF4;;chr2:145277882..145277967,-!p3@ZEB2!1.27!29.93!ZEB2;;chr2:63277978..63277995,+!p2@OTX1!1.25!16.92!OTX1;;chr8:65492756..65492768,+!p2@BHLHE22!1.25!16.92!BHLHE22;;chr18:53089453..53089482,-!p11@TCF4!1.25!16.92!TCF4;;chr10:119302232..119302265,+!p1@EMX2!1.25!16.92!EMX2;;chr3:141105705..141105770,+!p4@ZBTB38!1.23!19.52!ZBTB38;;chr2:166428861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| ||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000034;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000047;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000133;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000221;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002319;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001016 | |||
|ffid_belonging_in_development=CL:0000133,CL:0000221 | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 44: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Neural%2520stem%2520cells%252c%2520donor2.CNhs11384.11352-117H2.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Neural%2520stem%2520cells%252c%2520donor2.CNhs11384.11352-117H2.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Neural%2520stem%2520cells%252c%2520donor2.CNhs11384.11352-117H2.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Neural%2520stem%2520cells%252c%2520donor2.CNhs11384.11352-117H2.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Neural%2520stem%2520cells%252c%2520donor2.CNhs11384.11352-117H2.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11352-117H2 | |id=FF:11352-117H2 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000120 | ||
|is_obsolete= | |||
|library_id=CNhs11384 | |||
|library_id_phase_based=2:CNhs11384 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11352 | |||
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10014.GTTTCG.11352 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11352 | |||
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10014.GTTTCG.11352 | |||
|name=Neural stem cells, donor2 | |name=Neural stem cells, donor2 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 65: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11384,LSID771,release012,COMPLETED | |profile_hcage=CNhs11384,LSID771,release012,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=SRhi10014,,, | |profile_srnaseq=SRhi10014,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0,0,0.180995916487083,0,0,-0.160318030086386,0,-0.277362132193514,-0.282403560576942,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.153323010348428,0,0,0,0,0,-0.0979578962680575,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0,0,0,0,-0.317954060866147,0,0,0,0,0,0,0,0,-0.0242150211128343,0,0,0,0,0,0.101561294985865,0,-0.0969923612426051,0,0,0.26464820576107,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0861829088424508,0.236525245151731,0.180995916487083,0,0,0.171965942774432,0.26125089526155,0,0,0.180995916487083,0,-0.0980353512377064,-0.138477200800895,0,0,0,0,0,0,0,0,0,0,0.278319900870505,0,0,0,0,0,0,0.0846223225646225,0,0,0,-0.214235699061028,-0.738291924641461,0,0,-0.00986348846728863,0,0,0 | |||
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| |||
|rna_box=117 | |rna_box=117 | ||
|rna_catalog_number=custom | |rna_catalog_number=custom | ||
| Line 56: | Line 82: | ||
|rna_tube_id=117H2 | |rna_tube_id=117H2 | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|rnaseq_library_id=SRhi10014.GTTTCG | |||
|sample_age=embryo 18week | |sample_age=embryo 18week | ||
|sample_category=primary cells | |||
|sample_cell_catalog=N/A | |sample_cell_catalog=N/A | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 97: | ||
|sample_ethnicity=U | |sample_ethnicity=U | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;6.37214964257319e-224!GO:0043226;organelle;2.8018477259432e-184!GO:0043229;intracellular organelle;1.54595646680265e-183!GO:0043227;membrane-bound organelle;1.5383418982945e-178!GO:0043231;intracellular membrane-bound organelle;1.5383418982945e-178!GO:0005737;cytoplasm;8.11277693024042e-124!GO:0044422;organelle part;7.93015208886131e-105!GO:0044446;intracellular organelle part;1.21955661030048e-103!GO:0005634;nucleus;1.75297846179965e-101!GO:0005515;protein binding;1.3628392455185e-79!GO:0043170;macromolecule metabolic process;1.7707067407021e-78!GO:0044238;primary metabolic process;1.72131896470637e-76!GO:0032991;macromolecular complex;3.16946197627685e-75!GO:0044237;cellular metabolic process;5.28576852381905e-73!GO:0044444;cytoplasmic part;5.14675000353744e-71!GO:0043283;biopolymer metabolic process;6.62162333011391e-66!GO:0016043;cellular component organization and biogenesis;2.4976600961104e-64!GO:0044428;nuclear part;1.82726070576525e-63!GO:0003723;RNA binding;1.69584798659292e-59!GO:0030529;ribonucleoprotein complex;2.40733491331201e-58!GO:0010467;gene expression;4.07855521730786e-56!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.84539587663958e-53!GO:0043233;organelle lumen;4.05684503782887e-52!GO:0031974;membrane-enclosed lumen;4.05684503782887e-52!GO:0033036;macromolecule localization;3.84242139610071e-42!GO:0006396;RNA processing;8.3887550536823e-42!GO:0015031;protein transport;1.91257163842716e-40!GO:0016071;mRNA metabolic process;3.13969286062803e-39!GO:0003676;nucleic acid binding;4.69392361165544e-39!GO:0043234;protein complex;5.42212829144443e-39!GO:0031981;nuclear lumen;4.04305956884164e-38!GO:0008104;protein localization;2.03446749243053e-37!GO:0008380;RNA splicing;1.55547203372617e-36!GO:0045184;establishment of protein localization;1.83788612188064e-36!GO:0016070;RNA metabolic process;3.59327246233308e-36!GO:0006996;organelle organization and biogenesis;4.17012166282389e-36!GO:0006397;mRNA processing;2.57011532186961e-34!GO:0046907;intracellular transport;9.97253254370413e-33!GO:0031090;organelle membrane;1.69609295582616e-31!GO:0043228;non-membrane-bound organelle;2.96942357154238e-29!GO:0043232;intracellular non-membrane-bound organelle;2.96942357154238e-29!GO:0019538;protein metabolic process;3.44879607462097e-29!GO:0005840;ribosome;2.80536374571781e-28!GO:0006259;DNA metabolic process;2.9400006017109e-28!GO:0005739;mitochondrion;4.4162122573466e-27!GO:0006886;intracellular protein transport;3.93657306261499e-26!GO:0065003;macromolecular complex assembly;6.2008055867922e-26!GO:0006412;translation;7.03960634571689e-26!GO:0051649;establishment of cellular localization;1.0220348611625e-25!GO:0044267;cellular protein metabolic process;1.27634881201744e-25!GO:0044260;cellular macromolecule metabolic process;1.69049976078104e-25!GO:0051641;cellular localization;2.22862564936558e-25!GO:0005654;nucleoplasm;3.32568970964312e-24!GO:0005681;spliceosome;8.19440105182089e-24!GO:0000166;nucleotide binding;8.65265705621363e-24!GO:0003735;structural constituent of ribosome;3.63077601798944e-23!GO:0022607;cellular component assembly;4.31468871436203e-23!GO:0022613;ribonucleoprotein complex biogenesis and assembly;2.23003137922561e-21!GO:0031967;organelle envelope;2.78589466209223e-21!GO:0031975;envelope;3.14356079764533e-21!GO:0017111;nucleoside-triphosphatase activity;4.77409233185561e-21!GO:0044451;nucleoplasm part;1.8120342439899e-20!GO:0016462;pyrophosphatase activity;1.83975727496187e-20!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;3.3394793597791e-20!GO:0016817;hydrolase activity, acting on acid anhydrides;4.30016307246767e-20!GO:0005829;cytosol;5.3969392487874e-20!GO:0044429;mitochondrial part;7.72060729366439e-20!GO:0007049;cell cycle;1.83031266829283e-19!GO:0006512;ubiquitin cycle;3.42341786054679e-19!GO:0033279;ribosomal subunit;2.09293322165938e-18!GO:0051276;chromosome organization and biogenesis;5.29251840479936e-18!GO:0050794;regulation of cellular process;9.68836057601263e-18!GO:0009059;macromolecule biosynthetic process;1.45026639493456e-17!GO:0008134;transcription factor binding;3.50191771147678e-17!GO:0016874;ligase activity;1.09378029423331e-16!GO:0032553;ribonucleotide binding;2.18759641561105e-16!GO:0032555;purine ribonucleotide binding;2.18759641561105e-16!GO:0016192;vesicle-mediated transport;4.37838082850354e-16!GO:0006325;establishment and/or maintenance of chromatin architecture;5.53425497369675e-16!GO:0006119;oxidative phosphorylation;5.53425497369675e-16!GO:0005794;Golgi apparatus;1.0734771604743e-15!GO:0009058;biosynthetic process;1.26926263911495e-15!GO:0019222;regulation of metabolic process;3.29054898429313e-15!GO:0050789;regulation of biological process;3.58365892588541e-15!GO:0022618;protein-RNA complex assembly;3.86128567920693e-15!GO:0006323;DNA packaging;3.99118482361227e-15!GO:0043412;biopolymer modification;5.5803616804631e-15!GO:0044249;cellular biosynthetic process;5.70740012540646e-15!GO:0005830;cytosolic ribosome (sensu Eukaryota);6.92794132263159e-15!GO:0017076;purine nucleotide binding;1.11069274653738e-14!GO:0012505;endomembrane system;1.28746213051108e-14!GO:0006974;response to DNA damage stimulus;1.77728120891591e-14!GO:0005694;chromosome;2.12249528269207e-14!GO:0008135;translation factor activity, nucleic acid binding;5.31766239817971e-14!GO:0048770;pigment granule;1.50405814250007e-13!GO:0042470;melanosome;1.50405814250007e-13!GO:0006511;ubiquitin-dependent protein catabolic process;2.38148983624423e-13!GO:0006464;protein modification process;2.45701769769222e-13!GO:0022402;cell cycle process;2.86020120568017e-13!GO:0051603;proteolysis involved in cellular protein catabolic process;3.09618088137408e-13!GO:0019941;modification-dependent protein catabolic process;3.91852378895442e-13!GO:0043632;modification-dependent macromolecule catabolic process;3.91852378895442e-13!GO:0043687;post-translational protein modification;4.16112384053053e-13!GO:0005730;nucleolus;4.19189221963901e-13!GO:0015630;microtubule cytoskeleton;4.26118603825379e-13!GO:0006350;transcription;5.15288434662944e-13!GO:0044445;cytosolic part;6.27095463369051e-13!GO:0044257;cellular protein catabolic process;6.27095463369051e-13!GO:0000278;mitotic cell cycle;6.82476521604898e-13!GO:0048193;Golgi vesicle transport;1.31357395339898e-12!GO:0006605;protein targeting;1.47723850922032e-12!GO:0019866;organelle inner membrane;1.89175896320855e-12!GO:0005740;mitochondrial envelope;2.05641500421213e-12!GO:0044427;chromosomal part;2.49715995368702e-12!GO:0006457;protein folding;3.37537776868335e-12!GO:0031323;regulation of cellular metabolic process;4.0432178338882e-12!GO:0031966;mitochondrial membrane;6.563221112529e-12!GO:0044265;cellular macromolecule catabolic process;8.15248449223865e-12!GO:0006281;DNA repair;8.90529143326479e-12!GO:0000398;nuclear mRNA splicing, via spliceosome;1.03176275713804e-11!GO:0000375;RNA splicing, via transesterification reactions;1.03176275713804e-11!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;1.03176275713804e-11!GO:0005524;ATP binding;1.13045018754184e-11!GO:0032559;adenyl ribonucleotide binding;1.63554774364458e-11!GO:0010468;regulation of gene expression;1.97838216390231e-11!GO:0006366;transcription from RNA polymerase II promoter;2.97397210743403e-11!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;3.5154496918682e-11!GO:0032774;RNA biosynthetic process;3.79606540700001e-11!GO:0006351;transcription, DNA-dependent;4.33175668507217e-11!GO:0043285;biopolymer catabolic process;4.35827631324207e-11!GO:0031965;nuclear membrane;4.37811689528748e-11!GO:0005743;mitochondrial inner membrane;4.66571500241695e-11!GO:0003712;transcription cofactor activity;6.66924903101441e-11!GO:0000502;proteasome complex (sensu Eukaryota);6.9788208232182e-11!GO:0006913;nucleocytoplasmic transport;9.44632942372572e-11!GO:0016887;ATPase activity;1.53083664223422e-10!GO:0042623;ATPase activity, coupled;1.68110232687786e-10!GO:0030163;protein catabolic process;1.68110232687786e-10!GO:0006403;RNA localization;1.88071778150621e-10!GO:0051169;nuclear transport;1.95050384540598e-10!GO:0044455;mitochondrial membrane part;1.96814290248154e-10!GO:0016604;nuclear body;2.26738309523336e-10!GO:0004386;helicase activity;3.12245500187412e-10!GO:0003743;translation initiation factor activity;3.46643294559866e-10!GO:0050657;nucleic acid transport;4.09138173455307e-10!GO:0051236;establishment of RNA localization;4.09138173455307e-10!GO:0050658;RNA transport;4.09138173455307e-10!GO:0015935;small ribosomal subunit;4.09138173455307e-10!GO:0006333;chromatin assembly or disassembly;4.09514274945906e-10!GO:0044453;nuclear membrane part;4.10878717871247e-10!GO:0008639;small protein conjugating enzyme activity;4.48902006303989e-10!GO:0006446;regulation of translational initiation;4.69127444733248e-10!GO:0006413;translational initiation;5.3390136118917e-10!GO:0005635;nuclear envelope;6.17199080100098e-10!GO:0030554;adenyl nucleotide binding;6.32400506017343e-10!GO:0004842;ubiquitin-protein ligase activity;7.05891230328313e-10!GO:0000087;M phase of mitotic cell cycle;7.64058937758057e-10!GO:0045449;regulation of transcription;7.88205451069015e-10!GO:0019787;small conjugating protein ligase activity;1.14319227828323e-09!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;1.30559389490875e-09!GO:0016607;nuclear speck;1.41448663943656e-09!GO:0007067;mitosis;1.54965197965318e-09!GO:0051301;cell division;1.63113880797795e-09!GO:0031980;mitochondrial lumen;1.69848390102539e-09!GO:0005759;mitochondrial matrix;1.69848390102539e-09!GO:0003924;GTPase activity;1.78619521283856e-09!GO:0009057;macromolecule catabolic process;1.99123090462023e-09!GO:0005746;mitochondrial respiratory chain;2.11786644753341e-09!GO:0065007;biological regulation;2.34816918890487e-09!GO:0016568;chromatin modification;2.39884322968612e-09!GO:0050136;NADH dehydrogenase (quinone) activity;2.82211819752444e-09!GO:0003954;NADH dehydrogenase activity;2.82211819752444e-09!GO:0008137;NADH dehydrogenase (ubiquinone) activity;2.82211819752444e-09!GO:0031988;membrane-bound vesicle;3.30022626727819e-09!GO:0009719;response to endogenous stimulus;3.52482173833282e-09!GO:0006355;regulation of transcription, DNA-dependent;3.81749740441618e-09!GO:0015934;large ribosomal subunit;3.81749740441618e-09!GO:0008565;protein transporter activity;3.82849903933668e-09!GO:0051082;unfolded protein binding;4.75105738678771e-09!GO:0005643;nuclear pore;4.94713525127498e-09!GO:0022403;cell cycle phase;6.58649169811101e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;7.5666058622895e-09!GO:0016023;cytoplasmic membrane-bound vesicle;8.19048397550736e-09!GO:0000785;chromatin;1.45829020412824e-08!GO:0006260;DNA replication;1.59303642550437e-08!GO:0031982;vesicle;1.71222442280812e-08!GO:0042775;organelle ATP synthesis coupled electron transport;3.10188183844958e-08!GO:0042773;ATP synthesis coupled electron transport;3.10188183844958e-08!GO:0065004;protein-DNA complex assembly;3.43878468156826e-08!GO:0044431;Golgi apparatus part;3.57921352169463e-08!GO:0016881;acid-amino acid ligase activity;3.77862399514443e-08!GO:0051028;mRNA transport;4.06618363774899e-08!GO:0031410;cytoplasmic vesicle;4.17439890828193e-08!GO:0008026;ATP-dependent helicase activity;4.6220888408832e-08!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);4.75224609305684e-08!GO:0006357;regulation of transcription from RNA polymerase II promoter;4.87614874603904e-08!GO:0031252;leading edge;6.2093172341037e-08!GO:0007010;cytoskeleton organization and biogenesis;6.2442528961635e-08!GO:0019829;cation-transporting ATPase activity;6.25093627087858e-08!GO:0016879;ligase activity, forming carbon-nitrogen bonds;6.53126632559321e-08!GO:0030964;NADH dehydrogenase complex (quinone);9.39316771992194e-08!GO:0045271;respiratory chain complex I;9.39316771992194e-08!GO:0005747;mitochondrial respiratory chain complex I;9.39316771992194e-08!GO:0051726;regulation of cell cycle;1.1315255833933e-07!GO:0000074;regulation of progression through cell cycle;1.31399944335649e-07!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.37127729541017e-07!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;1.4494732501278e-07!GO:0048523;negative regulation of cellular process;2.27678869305254e-07!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);2.61077040435054e-07!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;2.81796338191207e-07!GO:0003677;DNA binding;2.90081137737299e-07!GO:0005525;GTP binding;2.92398833170833e-07!GO:0015986;ATP synthesis coupled proton transport;2.94701880082915e-07!GO:0015985;energy coupled proton transport, down electrochemical gradient;2.94701880082915e-07!GO:0006793;phosphorus metabolic process;3.26000620363807e-07!GO:0006796;phosphate metabolic process;3.26000620363807e-07!GO:0017038;protein import;3.28518853116135e-07!GO:0005761;mitochondrial ribosome;4.43780602440768e-07!GO:0000313;organellar ribosome;4.43780602440768e-07!GO:0009259;ribonucleotide metabolic process;4.59374598452863e-07!GO:0006163;purine nucleotide metabolic process;6.31608295117623e-07!GO:0042254;ribosome biogenesis and assembly;6.38210637816733e-07!GO:0000279;M phase;8.21281841946691e-07!GO:0009150;purine ribonucleotide metabolic process;9.19946343879193e-07!GO:0006461;protein complex assembly;1.00901811134134e-06!GO:0065002;intracellular protein transport across a membrane;1.03176049247245e-06!GO:0045045;secretory pathway;1.04595149567225e-06!GO:0048475;coated membrane;1.05707864006024e-06!GO:0030117;membrane coat;1.05707864006024e-06!GO:0009060;aerobic respiration;1.13406435045737e-06!GO:0032446;protein modification by small protein conjugation;1.21790392583152e-06!GO:0044248;cellular catabolic process;1.30063050859273e-06!GO:0051186;cofactor metabolic process;1.34174375633063e-06!GO:0009199;ribonucleoside triphosphate metabolic process;1.41333843843336e-06!GO:0005874;microtubule;1.51807241895538e-06!GO:0046930;pore complex;1.59397933747708e-06!GO:0006164;purine nucleotide biosynthetic process;1.6018577805511e-06!GO:0043566;structure-specific DNA binding;1.68987953467649e-06!GO:0009142;nucleoside triphosphate biosynthetic process;1.80019017385722e-06!GO:0009201;ribonucleoside triphosphate biosynthetic process;1.80019017385722e-06!GO:0009205;purine ribonucleoside triphosphate metabolic process;1.99724101569944e-06!GO:0009144;purine nucleoside triphosphate metabolic process;1.99724101569944e-06!GO:0009260;ribonucleotide biosynthetic process;2.17930486511729e-06!GO:0009152;purine ribonucleotide biosynthetic process;2.28099661668073e-06!GO:0005768;endosome;2.29897924354642e-06!GO:0031202;RNA splicing factor activity, transesterification mechanism;2.37938166993334e-06!GO:0009141;nucleoside triphosphate metabolic process;2.38815784443027e-06!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;2.43919640485809e-06!GO:0032561;guanyl ribonucleotide binding;2.4719750402291e-06!GO:0019001;guanyl nucleotide binding;2.4719750402291e-06!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;2.51188458758344e-06!GO:0009145;purine nucleoside triphosphate biosynthetic process;2.51188458758344e-06!GO:0006334;nucleosome assembly;2.71386392313634e-06!GO:0045333;cellular respiration;2.7701653692417e-06!GO:0005783;endoplasmic reticulum;3.23061079592633e-06!GO:0006888;ER to Golgi vesicle-mediated transport;3.33633349135858e-06!GO:0016567;protein ubiquitination;3.35978976174179e-06!GO:0000139;Golgi membrane;3.42563815062118e-06!GO:0016469;proton-transporting two-sector ATPase complex;3.49697950604488e-06!GO:0006754;ATP biosynthetic process;4.21317492677848e-06!GO:0006753;nucleoside phosphate metabolic process;4.21317492677848e-06!GO:0046034;ATP metabolic process;4.29025071337082e-06!GO:0000902;cell morphogenesis;4.60147686430274e-06!GO:0032989;cellular structure morphogenesis;4.60147686430274e-06!GO:0016363;nuclear matrix;4.77096183174372e-06!GO:0008270;zinc ion binding;4.91357265823385e-06!GO:0003713;transcription coactivator activity;4.93781735129057e-06!GO:0016310;phosphorylation;5.34345455198576e-06!GO:0003729;mRNA binding;5.35322925246546e-06!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;5.42937059393728e-06!GO:0015631;tubulin binding;5.6062858715587e-06!GO:0031497;chromatin assembly;5.7382896882694e-06!GO:0016564;transcription repressor activity;5.81249354078957e-06!GO:0007017;microtubule-based process;6.50784213588592e-06!GO:0003697;single-stranded DNA binding;6.50784213588592e-06!GO:0031324;negative regulation of cellular metabolic process;6.65676791011466e-06!GO:0005813;centrosome;7.91789186102177e-06!GO:0009892;negative regulation of metabolic process;8.93879591885946e-06!GO:0048519;negative regulation of biological process;1.06802176666942e-05!GO:0044432;endoplasmic reticulum part;1.13548251871079e-05!GO:0008092;cytoskeletal protein binding;1.55800406777244e-05!GO:0000245;spliceosome assembly;1.57788654925866e-05!GO:0030120;vesicle coat;1.67452448222081e-05!GO:0030662;coated vesicle membrane;1.67452448222081e-05!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.86810500756592e-05!GO:0006613;cotranslational protein targeting to membrane;1.88470363627672e-05!GO:0006732;coenzyme metabolic process;2.08263019479753e-05!GO:0003682;chromatin binding;2.38595590757397e-05!GO:0019899;enzyme binding;2.38891182615906e-05!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;2.54939736789431e-05!GO:0004812;aminoacyl-tRNA ligase activity;2.54939736789431e-05!GO:0016875;ligase activity, forming carbon-oxygen bonds;2.54939736789431e-05!GO:0003724;RNA helicase activity;2.59029365352537e-05!GO:0051170;nuclear import;2.62004147205989e-05!GO:0030532;small nuclear ribonucleoprotein complex;2.75427784568305e-05!GO:0006606;protein import into nucleus;2.79669750554921e-05!GO:0051427;hormone receptor binding;2.81613291590418e-05!GO:0016481;negative regulation of transcription;2.86268115073678e-05!GO:0005815;microtubule organizing center;2.88804237835081e-05!GO:0003714;transcription corepressor activity;2.90531306955899e-05!GO:0005793;ER-Golgi intermediate compartment;3.45307072244075e-05!GO:0006099;tricarboxylic acid cycle;3.6335161636152e-05!GO:0046356;acetyl-CoA catabolic process;3.6335161636152e-05!GO:0044440;endosomal part;3.6335161636152e-05!GO:0010008;endosome membrane;3.6335161636152e-05!GO:0007399;nervous system development;3.76841973668021e-05!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;3.98345085806952e-05!GO:0006399;tRNA metabolic process;4.39657506987152e-05!GO:0043038;amino acid activation;4.67722942398411e-05!GO:0006418;tRNA aminoacylation for protein translation;4.67722942398411e-05!GO:0043039;tRNA aminoacylation;4.67722942398411e-05!GO:0006084;acetyl-CoA metabolic process;4.94649792234449e-05!GO:0015078;hydrogen ion transmembrane transporter activity;5.630177616367e-05!GO:0035257;nuclear hormone receptor binding;5.65217909968237e-05!GO:0045259;proton-transporting ATP synthase complex;6.23167635250592e-05!GO:0048471;perinuclear region of cytoplasm;6.85507670548622e-05!GO:0005798;Golgi-associated vesicle;7.34325043950024e-05!GO:0030027;lamellipodium;8.58483023568838e-05!GO:0005667;transcription factor complex;8.97997255820726e-05!GO:0051168;nuclear export;9.62034804668634e-05!GO:0005905;coated pit;0.000106042250706189!GO:0045786;negative regulation of progression through cell cycle;0.000110575346721061!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000143374243027336!GO:0051329;interphase of mitotic cell cycle;0.00019000071869228!GO:0006752;group transfer coenzyme metabolic process;0.00019550100324789!GO:0016563;transcription activator activity;0.000223642851976884!GO:0006364;rRNA processing;0.000231002840960374!GO:0007264;small GTPase mediated signal transduction;0.000232193224585154!GO:0005819;spindle;0.000243964779906243!GO:0009109;coenzyme catabolic process;0.000248461129885975!GO:0016044;membrane organization and biogenesis;0.000252015408565308!GO:0005875;microtubule associated complex;0.00025356691876535!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.000270885924114456!GO:0051246;regulation of protein metabolic process;0.000273122180802174!GO:0043623;cellular protein complex assembly;0.000298135705534807!GO:0042175;nuclear envelope-endoplasmic reticulum network;0.000302379514077739!GO:0032940;secretion by cell;0.000316992772906377!GO:0015077;monovalent inorganic cation transmembrane transporter activity;0.000325374063929127!GO:0016072;rRNA metabolic process;0.000378223914928356!GO:0005769;early endosome;0.00039382527214087!GO:0051188;cofactor biosynthetic process;0.000485648625686599!GO:0008017;microtubule binding;0.000501927417417134!GO:0051128;regulation of cellular component organization and biogenesis;0.000509779341701405!GO:0000151;ubiquitin ligase complex;0.000517384724564249!GO:0005789;endoplasmic reticulum membrane;0.000527031734705698!GO:0051325;interphase;0.000562006743199394!GO:0051187;cofactor catabolic process;0.000563909900485164!GO:0030036;actin cytoskeleton organization and biogenesis;0.000622532199647872!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000646287638411553!GO:0006891;intra-Golgi vesicle-mediated transport;0.000652556968958733!GO:0031124;mRNA 3'-end processing;0.000654524372407465!GO:0008186;RNA-dependent ATPase activity;0.0006937220398629!GO:0000776;kinetochore;0.000744331414359586!GO:0001726;ruffle;0.000748700656487583!GO:0008361;regulation of cell size;0.000785280951248028!GO:0003690;double-stranded DNA binding;0.000788493190430748!GO:0043069;negative regulation of programmed cell death;0.000806292301470703!GO:0005770;late endosome;0.000843322839665831!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000904927739543547!GO:0043066;negative regulation of apoptosis;0.00107430829403868!GO:0005839;proteasome core complex (sensu Eukaryota);0.00112242105892947!GO:0050767;regulation of neurogenesis;0.00117767005847938!GO:0008287;protein serine/threonine phosphatase complex;0.00125631767671156!GO:0007051;spindle organization and biogenesis;0.00134446835611044!GO:0004674;protein serine/threonine kinase activity;0.00141139070184598!GO:0045892;negative regulation of transcription, DNA-dependent;0.00147670222933448!GO:0051087;chaperone binding;0.00156716458677023!GO:0045893;positive regulation of transcription, DNA-dependent;0.00161054291135126!GO:0016049;cell growth;0.00164299388361736!GO:0012501;programmed cell death;0.0016981766261419!GO:0046914;transition metal ion binding;0.00172738125733313!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00172738125733313!GO:0015399;primary active transmembrane transporter activity;0.00172738125733313!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.00178444716733257!GO:0006405;RNA export from nucleus;0.0018139323648001!GO:0006414;translational elongation;0.00190582130563297!GO:0030521;androgen receptor signaling pathway;0.00192538748353099!GO:0006916;anti-apoptosis;0.0019386055124516!GO:0004004;ATP-dependent RNA helicase activity;0.00196785267855439!GO:0009056;catabolic process;0.00211492922707995!GO:0005657;replication fork;0.00211538264503012!GO:0000075;cell cycle checkpoint;0.00211569714572249!GO:0000775;chromosome, pericentric region;0.00215936311476575!GO:0006261;DNA-dependent DNA replication;0.00221130325277275!GO:0030137;COPI-coated vesicle;0.00222374138570615!GO:0006612;protein targeting to membrane;0.00228956627753473!GO:0006915;apoptosis;0.00249495005613742!GO:0008219;cell death;0.00277017543243137!GO:0016265;death;0.00277017543243137!GO:0009108;coenzyme biosynthetic process;0.0029472809379313!GO:0031901;early endosome membrane;0.00314610894527858!GO:0031123;RNA 3'-end processing;0.00319708197235426!GO:0030029;actin filament-based process;0.00319708197235426!GO:0000904;cellular morphogenesis during differentiation;0.00332492700639754!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00338122856345208!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00343834633295826!GO:0016585;chromatin remodeling complex;0.00351025340473485!GO:0009055;electron carrier activity;0.00351325990021339!GO:0008654;phospholipid biosynthetic process;0.00352273652573774!GO:0006402;mRNA catabolic process;0.00362148195117786!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00371122852038766!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.00371705273596497!GO:0000209;protein polyubiquitination;0.00380208982911259!GO:0043021;ribonucleoprotein binding;0.00391511647509772!GO:0004298;threonine endopeptidase activity;0.00400885200949521!GO:0007005;mitochondrion organization and biogenesis;0.00404585430088216!GO:0001558;regulation of cell growth;0.00425245973217203!GO:0008250;oligosaccharyl transferase complex;0.00431983809700992!GO:0030118;clathrin coat;0.00432317735634488!GO:0016740;transferase activity;0.00460779135777522!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.00462786485400002!GO:0000059;protein import into nucleus, docking;0.00466418304529935!GO:0005048;signal sequence binding;0.00466418304529935!GO:0022406;membrane docking;0.00466418304529935!GO:0048278;vesicle docking;0.00466418304529935!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00466418304529935!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00466418304529935!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00466418304529935!GO:0016126;sterol biosynthetic process;0.00466418304529935!GO:0051252;regulation of RNA metabolic process;0.00475492165452462!GO:0007050;cell cycle arrest;0.00497084419891511!GO:0048500;signal recognition particle;0.00512562689970206!GO:0030030;cell projection organization and biogenesis;0.00530039732290005!GO:0048858;cell projection morphogenesis;0.00530039732290005!GO:0032990;cell part morphogenesis;0.00530039732290005!GO:0005869;dynactin complex;0.00538528851094842!GO:0045941;positive regulation of transcription;0.00547174133720333!GO:0030867;rough endoplasmic reticulum membrane;0.00553638104612829!GO:0007052;mitotic spindle organization and biogenesis;0.00556071114747384!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00581855475962531!GO:0003711;transcription elongation regulator activity;0.00600159869761401!GO:0048468;cell development;0.00602504589794024!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00623949702276637!GO:0030133;transport vesicle;0.00628829515160282!GO:0019887;protein kinase regulator activity;0.00628829515160282!GO:0016197;endosome transport;0.00628829515160282!GO:0048667;neuron morphogenesis during differentiation;0.00631584622316684!GO:0048812;neurite morphogenesis;0.00631584622316684!GO:0035258;steroid hormone receptor binding;0.00634989056953632!GO:0006897;endocytosis;0.00636334995266842!GO:0010324;membrane invagination;0.00636334995266842!GO:0008139;nuclear localization sequence binding;0.0063910960714765!GO:0006338;chromatin remodeling;0.00641529513587469!GO:0022008;neurogenesis;0.0064305637326652!GO:0003746;translation elongation factor activity;0.00655789290185574!GO:0030663;COPI coated vesicle membrane;0.00661312565532191!GO:0030126;COPI vesicle coat;0.00661312565532191!GO:0043492;ATPase activity, coupled to movement of substances;0.00665525712904308!GO:0030182;neuron differentiation;0.00673700794215113!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00705770921405595!GO:0045047;protein targeting to ER;0.00705770921405595!GO:0016311;dephosphorylation;0.00705770921405595!GO:0051920;peroxiredoxin activity;0.00714240824658836!GO:0008601;protein phosphatase type 2A regulator activity;0.00715588557782202!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00726410062454755!GO:0007059;chromosome segregation;0.00727246430753388!GO:0006607;NLS-bearing substrate import into nucleus;0.00727901654786476!GO:0003678;DNA helicase activity;0.00730831421790132!GO:0004576;oligosaccharyl transferase activity;0.00732585674323982!GO:0006378;mRNA polyadenylation;0.00738671227659861!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.00739651263245623!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;0.00743611767114896!GO:0033673;negative regulation of kinase activity;0.00746905510766753!GO:0006469;negative regulation of protein kinase activity;0.00746905510766753!GO:0015980;energy derivation by oxidation of organic compounds;0.00747998380370736!GO:0000159;protein phosphatase type 2A complex;0.00751004708445716!GO:0040029;regulation of gene expression, epigenetic;0.00762506925749505!GO:0043488;regulation of mRNA stability;0.00842093039988326!GO:0043487;regulation of RNA stability;0.00842093039988326!GO:0006302;double-strand break repair;0.00842513948962343!GO:0048489;synaptic vesicle transport;0.00850999470566214!GO:0048699;generation of neurons;0.00853266210317841!GO:0019207;kinase regulator activity;0.00853266210317841!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.00869319930556722!GO:0016584;nucleosome positioning;0.00878149962757492!GO:0006383;transcription from RNA polymerase III promoter;0.00878149962757492!GO:0006595;polyamine metabolic process;0.00896459533231368!GO:0006904;vesicle docking during exocytosis;0.0091258134896349!GO:0030134;ER to Golgi transport vesicle;0.00983160671339691!GO:0030127;COPII vesicle coat;0.0100196609453851!GO:0012507;ER to Golgi transport vesicle membrane;0.0100196609453851!GO:0030518;steroid hormone receptor signaling pathway;0.0103050429245509!GO:0006376;mRNA splice site selection;0.0103331409509922!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0103331409509922!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0105270068879082!GO:0030427;site of polarized growth;0.0106182671272962!GO:0051789;response to protein stimulus;0.0106182671272962!GO:0006986;response to unfolded protein;0.0106182671272962!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.0108202963096624!GO:0008094;DNA-dependent ATPase activity;0.0108202963096624!GO:0051348;negative regulation of transferase activity;0.0108314423706456!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0109082500095922!GO:0043414;biopolymer methylation;0.0109082500095922!GO:0005876;spindle microtubule;0.0109966510242657!GO:0016251;general RNA polymerase II transcription factor activity;0.0111272380174707!GO:0008022;protein C-terminus binding;0.0112464248260045!GO:0006695;cholesterol biosynthetic process;0.0113682607565284!GO:0003684;damaged DNA binding;0.0115418646798378!GO:0043681;protein import into mitochondrion;0.0121188048202463!GO:0008312;7S RNA binding;0.0121834240062347!GO:0007409;axonogenesis;0.0122856404640157!GO:0030426;growth cone;0.0126162757332894!GO:0007019;microtubule depolymerization;0.0126808623668621!GO:0050681;androgen receptor binding;0.0127027769799144!GO:0000339;RNA cap binding;0.0130307288776898!GO:0005885;Arp2/3 protein complex;0.0131697042333134!GO:0007004;telomere maintenance via telomerase;0.0133045348349959!GO:0051129;negative regulation of cellular component organization and biogenesis;0.0136189991544217!GO:0005788;endoplasmic reticulum lumen;0.0136601323359296!GO:0031072;heat shock protein binding;0.0137357738472251!GO:0030658;transport vesicle membrane;0.0142957042815653!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.0146359286188034!GO:0006352;transcription initiation;0.0149660643794248!GO:0031111;negative regulation of microtubule polymerization or depolymerization;0.0151979598747725!GO:0005083;small GTPase regulator activity;0.0152805365344078!GO:0008286;insulin receptor signaling pathway;0.0158622680186545!GO:0008180;signalosome;0.0159411975213603!GO:0048487;beta-tubulin binding;0.0162278772110658!GO:0001725;stress fiber;0.0162726193078662!GO:0032432;actin filament bundle;0.0162726193078662!GO:0018196;peptidyl-asparagine modification;0.0170066617476538!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.0170066617476538!GO:0030660;Golgi-associated vesicle membrane;0.0170286924565716!GO:0006818;hydrogen transport;0.017249815846188!GO:0000082;G1/S transition of mitotic cell cycle;0.0174420653931276!GO:0005637;nuclear inner membrane;0.0174420653931276!GO:0046467;membrane lipid biosynthetic process;0.0174843716185974!GO:0000792;heterochromatin;0.0176941218410426!GO:0005684;U2-dependent spliceosome;0.0179297221046922!GO:0043086;negative regulation of catalytic activity;0.0180321029929342!GO:0005832;chaperonin-containing T-complex;0.0184537264941415!GO:0006470;protein amino acid dephosphorylation;0.0184778036642061!GO:0015992;proton transport;0.0185213206839906!GO:0030320;cellular monovalent inorganic anion homeostasis;0.01956743905192!GO:0055083;monovalent inorganic anion homeostasis;0.01956743905192!GO:0055064;chloride ion homeostasis;0.01956743905192!GO:0030644;cellular chloride ion homeostasis;0.01956743905192!GO:0016859;cis-trans isomerase activity;0.0196887902685903!GO:0043005;neuron projection;0.0198928157135563!GO:0019208;phosphatase regulator activity;0.0203963308413058!GO:0031175;neurite development;0.0204103931736291!GO:0032259;methylation;0.0209013604219236!GO:0051052;regulation of DNA metabolic process;0.0211699994734864!GO:0003730;mRNA 3'-UTR binding;0.0216639009035285!GO:0042026;protein refolding;0.0217366060950452!GO:0006310;DNA recombination;0.0221397837665752!GO:0016779;nucleotidyltransferase activity;0.0228944340533889!GO:0012506;vesicle membrane;0.0235589848518817!GO:0005762;mitochondrial large ribosomal subunit;0.0236448127539588!GO:0000315;organellar large ribosomal subunit;0.0236448127539588!GO:0017166;vinculin binding;0.0236609972068972!GO:0008276;protein methyltransferase activity;0.0236609972068972!GO:0032200;telomere organization and biogenesis;0.023761169327208!GO:0000723;telomere maintenance;0.023761169327208!GO:0007093;mitotic cell cycle checkpoint;0.0240054220496443!GO:0048666;neuron development;0.0243360658186389!GO:0043624;cellular protein complex disassembly;0.0245663526815608!GO:0032984;macromolecular complex disassembly;0.0246122683335382!GO:0000781;chromosome, telomeric region;0.0248138967172824!GO:0030135;coated vesicle;0.0251654198471186!GO:0006892;post-Golgi vesicle-mediated transport;0.0256897246684965!GO:0045502;dynein binding;0.0257369946308376!GO:0065009;regulation of a molecular function;0.0265223607355639!GO:0044452;nucleolar part;0.0270337666217517!GO:0003702;RNA polymerase II transcription factor activity;0.0271992544893004!GO:0031902;late endosome membrane;0.0277265283705045!GO:0033116;ER-Golgi intermediate compartment membrane;0.0277566435350595!GO:0007021;tubulin folding;0.0280913238544784!GO:0019783;small conjugating protein-specific protease activity;0.0290645726683414!GO:0047485;protein N-terminus binding;0.0291893191986921!GO:0044433;cytoplasmic vesicle part;0.0299519811928362!GO:0003779;actin binding;0.0308043033262411!GO:0032508;DNA duplex unwinding;0.0314129501658992!GO:0032392;DNA geometric change;0.0314129501658992!GO:0022890;inorganic cation transmembrane transporter activity;0.0314129501658992!GO:0007265;Ras protein signal transduction;0.0316916440843351!GO:0004843;ubiquitin-specific protease activity;0.0316916440843351!GO:0051338;regulation of transferase activity;0.0317103926383688!GO:0042585;germinal vesicle;0.0318553565005377!GO:0003899;DNA-directed RNA polymerase activity;0.0318553565005377!GO:0050770;regulation of axonogenesis;0.0324013282080186!GO:0006611;protein export from nucleus;0.0337923704499454!GO:0004221;ubiquitin thiolesterase activity;0.0346557798939765!GO:0046474;glycerophospholipid biosynthetic process;0.0354082729441282!GO:0009117;nucleotide metabolic process;0.0357211829167646!GO:0000049;tRNA binding;0.0357749069228855!GO:0005938;cell cortex;0.0358059586852366!GO:0031114;regulation of microtubule depolymerization;0.0358837806811675!GO:0007026;negative regulation of microtubule depolymerization;0.0358837806811675!GO:0006289;nucleotide-excision repair;0.0358957677872237!GO:0005881;cytoplasmic microtubule;0.0358957677872237!GO:0031529;ruffle organization and biogenesis;0.0362073360473164!GO:0007006;mitochondrial membrane organization and biogenesis;0.0366432279007369!GO:0000314;organellar small ribosomal subunit;0.0368178143267899!GO:0005763;mitochondrial small ribosomal subunit;0.0368178143267899!GO:0043631;RNA polyadenylation;0.0372338343443404!GO:0022415;viral reproductive process;0.0372740606096198!GO:0019717;synaptosome;0.0377240373895892!GO:0032594;protein transport within lipid bilayer;0.0377240373895892!GO:0032907;transforming growth factor-beta3 production;0.0377240373895892!GO:0032596;protein transport into lipid raft;0.0377240373895892!GO:0032910;regulation of transforming growth factor-beta3 production;0.0377240373895892!GO:0032595;B cell receptor transport within lipid bilayer;0.0377240373895892!GO:0033606;chemokine receptor transport within lipid bilayer;0.0377240373895892!GO:0032600;chemokine receptor transport out of lipid raft;0.0377240373895892!GO:0032599;protein transport out of lipid raft;0.0377240373895892!GO:0032597;B cell receptor transport into lipid raft;0.0377240373895892!GO:0032913;negative regulation of transforming growth factor-beta3 production;0.0377240373895892!GO:0008154;actin polymerization and/or depolymerization;0.0383580446761732!GO:0030516;regulation of axon extension;0.0385634473887389!GO:0051287;NAD binding;0.0390553199503469!GO:0006401;RNA catabolic process;0.0395150011000039!GO:0030880;RNA polymerase complex;0.0397366829852317!GO:0043241;protein complex disassembly;0.0397366829852317!GO:0030176;integral to endoplasmic reticulum membrane;0.0398255833111517!GO:0043407;negative regulation of MAP kinase activity;0.0402343711488482!GO:0008097;5S rRNA binding;0.0405385530698185!GO:0030175;filopodium;0.0408478009334243!GO:0043130;ubiquitin binding;0.0414579938368703!GO:0032182;small conjugating protein binding;0.0414579938368703!GO:0004860;protein kinase inhibitor activity;0.0424476088567408!GO:0004721;phosphoprotein phosphatase activity;0.0425967932115159!GO:0017134;fibroblast growth factor binding;0.0427541620998824!GO:0030522;intracellular receptor-mediated signaling pathway;0.0430125776876526!GO:0000228;nuclear chromosome;0.0431250697464651!GO:0005856;cytoskeleton;0.0434091110325026!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0441860363060468!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0441860363060468!GO:0031371;ubiquitin conjugating enzyme complex;0.0448771285358582!GO:0007243;protein kinase cascade;0.0450338778987136!GO:0005521;lamin binding;0.046096244369458!GO:0000786;nucleosome;0.046096244369458!GO:0005862;muscle thin filament tropomyosin;0.0474679570218922!GO:0006665;sphingolipid metabolic process;0.0474679570218922!GO:0042981;regulation of apoptosis;0.0476956655622096!GO:0043549;regulation of kinase activity;0.0477719128485381!GO:0043067;regulation of programmed cell death;0.0478317421221922!GO:0031628;opioid receptor binding;0.0481181874414251!GO:0031852;mu-type opioid receptor binding;0.0481181874414251!GO:0019902;phosphatase binding;0.0499391434434697 | |||
|sample_id=11352 | |sample_id=11352 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 105: | ||
|sample_tissue=brain | |sample_tissue=brain | ||
|top_motifs=SOX2:3.89532743069;NANOG:3.86562177497;PRRX1,2:3.02229238963;NKX2-3_NKX2-5:2.93608032689;MZF1:2.75785011343;ZFP161:2.70250762991;MED-1{core}:2.55112286491;SOX17:2.45834408644;LEF1_TCF7_TCF7L1,2:2.44911135189;TFDP1:2.40393904883;POU5F1:2.40015993043;JUN:2.3503285681;CUX2:2.32130075503;OCT4_SOX2{dimer}:2.30369422105;ADNP_IRX_SIX_ZHX:2.27314120814;MTE{core}:2.25633918385;EGR1..3:2.14312080109;PAX4:2.12086804123;FOXM1:2.10336280256;SMAD1..7,9:1.94347644055;T:1.9042822883;ALX1:1.89102213707;SOX{8,9,10}:1.86539263606;GFI1:1.7549590933;NHLH1,2:1.73728499255;MAZ:1.73237297933;PRDM1:1.72978280624;ATF2:1.68447798261;RFX1:1.67494616892;LHX3,4:1.66478119337;BREu{core}:1.61873263585;GTF2I:1.60754581537;PAX5:1.56790741158;STAT1,3:1.55204813783;MYFfamily:1.54235173415;ZBTB6:1.53369890057;HOXA9_MEIS1:1.52906243508;PAX8:1.50540379204;PBX1:1.50272673774;POU3F1..4:1.49872518879;AHR_ARNT_ARNT2:1.48750736987;PPARG:1.43084659642;ZIC1..3:1.36349230618;TGIF1:1.36151251531;NRF1:1.35960111091;PATZ1:1.34751136791;POU6F1:1.31621374371;NR1H4:1.294288309;CDC5L:1.28945303172;RREB1:1.22347504599;RORA:1.21935459737;REST:1.18128884319;RBPJ:1.17434059131;CRX:1.17207245755;TFAP2B:1.14358776878;ATF4:1.13673748093;SPZ1:1.13538976528;YY1:1.07777122731;VSX1,2:1.06108682969;PAX3,7:1.02718362512;RFX2..5_RFXANK_RFXAP:1.01575402743;NFY{A,B,C}:1.0058591315;ONECUT1,2:0.984646187788;GCM1,2:0.972036255873;POU1F1:0.970293934363;HIC1:0.936794341438;STAT5{A,B}:0.920637236285;NKX6-1,2:0.916160158798;PAX6:0.793442846435;ZNF143:0.744514304042;AR:0.729313861067;GFI1B:0.709957551361;E2F1..5:0.700504526516;ATF5_CREB3:0.687916794277;CDX1,2,4:0.637588758059;FOXQ1:0.610309168564;XBP1:0.606017694629;MYB:0.544746943499;FOXP1:0.536625321496;MAFB:0.488036266218;EP300:0.484830172524;FOXD3:0.445918121307;GATA4:0.43197645216;GZF1:0.429014756177;TLX2:0.375374586549;FOXN1:0.329350259662;CREB1:0.313922089067;ARID5B:0.307710495254;LMO2:0.303874781117;PAX1,9:0.292732775177;HOX{A5,B5}:0.280895739668;FOXP3:0.278815905096;SOX5:0.269320143037;DBP:0.242670812159;NKX2-1,4:0.240395278653;PDX1:0.221342920392;NANOG{mouse}:0.217130921397;GTF2A1,2:0.168039893924;KLF4:0.165652950405;HBP1_HMGB_SSRP1_UBTF:0.157038651883;HAND1,2:0.153148184671;ELK1,4_GABP{A,B1}:0.149404362312;ZNF384:0.14626835017;NKX3-2:0.122205423564;ZNF423:0.0849873806541;TEF:0.0843071721304;GATA6:0.0757241975373;EN1,2:0.0511699730798;TLX1..3_NFIC{dimer}:0.0329695644344;SP1:0.0067832774803;MYOD1:0.00677742775098;FOXA2:-0.00448574448143;MEF2{A,B,C,D}:-0.00746846006284;MTF1:-0.00786718487272;XCPE1{core}:-0.0121508141535;BPTF:-0.0124535322381;NR3C1:-0.023523168426;EVI1:-0.0349228088781;NFE2L2:-0.0374995243061;HMGA1,2:-0.0445937573065;HOX{A4,D4}:-0.0623196810324;TBX4,5:-0.0669163980557;HNF1A:-0.0727541436544;ESRRA:-0.0758526147622;FOX{F1,F2,J1}:-0.0973984067615;ZBTB16:-0.123993029896;TOPORS:-0.154518882907;IKZF1:-0.156181156105;EBF1:-0.22401642899;FOS_FOS{B,L1}_JUN{B,D}:-0.225488178386;POU2F1..3:-0.260563387977;NFATC1..3:-0.265668627844;TBP:-0.28173888614;SREBF1,2:-0.289954490977;NKX2-2,8:-0.300756378165;TFAP4:-0.307870219376;NKX3-1:-0.316958844953;NR6A1:-0.344475036056;NFIL3:-0.347022907347;RUNX1..3:-0.347231716152;BACH2:-0.36258300423;STAT2,4,6:-0.388519467142;TP53:-0.389897598193;FOSL2:-0.405106877863;NFE2:-0.406053970267;NFIX:-0.420214036958;HNF4A_NR2F1,2:-0.441244203162;FOX{D1,D2}:-0.475586365474;PAX2:-0.477640525152;PITX1..3:-0.509111730063;SPI1:-0.518972544718;NFKB1_REL_RELA:-0.519955665234;SPIB:-0.525620534267;DMAP1_NCOR{1,2}_SMARC:-0.544031929252;TFCP2:-0.575391138202;ZEB1:-0.579624705296;IRF7:-0.592872755219;HSF1,2:-0.607828367729;NFE2L1:-0.610716679512;CEBPA,B_DDIT3:-0.631734742722;IKZF2:-0.663314655958;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.6653405199;UFEwm:-0.671904073111;SNAI1..3:-0.682166000565;HLF:-0.700778437799;MYBL2:-0.741972682551;ATF6:-0.752101169013;SRF:-0.773124096682;TEAD1:-0.78414328288;TAL1_TCF{3,4,12}:-0.788619399407;bHLH_family:-0.841068120708;IRF1,2:-0.844820528744;HMX1:-0.865260004987;ETS1,2:-0.917555166953;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.99559681899;GLI1..3:-1.11042753387;ELF1,2,4:-1.13794872178;ZNF238:-1.15167902807;FOXL1:-1.15804039861;ZNF148:-1.18568835706;HOX{A6,A7,B6,B7}:-1.19548215292;HES1:-1.25720889452;AIRE:-1.28817781688;HIF1A:-1.29822021531;RXR{A,B,G}:-1.30942310671;FOXO1,3,4:-1.36027548755;NR5A1,2:-1.36324883575;TFAP2{A,C}:-1.4572478032;ESR1:-1.48177961464;RXRA_VDR{dimer}:-1.69116839591;ALX4:-1.70066992331;FOX{I1,J2}:-1.78279984029 | |top_motifs=SOX2:3.89532743069;NANOG:3.86562177497;PRRX1,2:3.02229238963;NKX2-3_NKX2-5:2.93608032689;MZF1:2.75785011343;ZFP161:2.70250762991;MED-1{core}:2.55112286491;SOX17:2.45834408644;LEF1_TCF7_TCF7L1,2:2.44911135189;TFDP1:2.40393904883;POU5F1:2.40015993043;JUN:2.3503285681;CUX2:2.32130075503;OCT4_SOX2{dimer}:2.30369422105;ADNP_IRX_SIX_ZHX:2.27314120814;MTE{core}:2.25633918385;EGR1..3:2.14312080109;PAX4:2.12086804123;FOXM1:2.10336280256;SMAD1..7,9:1.94347644055;T:1.9042822883;ALX1:1.89102213707;SOX{8,9,10}:1.86539263606;GFI1:1.7549590933;NHLH1,2:1.73728499255;MAZ:1.73237297933;PRDM1:1.72978280624;ATF2:1.68447798261;RFX1:1.67494616892;LHX3,4:1.66478119337;BREu{core}:1.61873263585;GTF2I:1.60754581537;PAX5:1.56790741158;STAT1,3:1.55204813783;MYFfamily:1.54235173415;ZBTB6:1.53369890057;HOXA9_MEIS1:1.52906243508;PAX8:1.50540379204;PBX1:1.50272673774;POU3F1..4:1.49872518879;AHR_ARNT_ARNT2:1.48750736987;PPARG:1.43084659642;ZIC1..3:1.36349230618;TGIF1:1.36151251531;NRF1:1.35960111091;PATZ1:1.34751136791;POU6F1:1.31621374371;NR1H4:1.294288309;CDC5L:1.28945303172;RREB1:1.22347504599;RORA:1.21935459737;REST:1.18128884319;RBPJ:1.17434059131;CRX:1.17207245755;TFAP2B:1.14358776878;ATF4:1.13673748093;SPZ1:1.13538976528;YY1:1.07777122731;VSX1,2:1.06108682969;PAX3,7:1.02718362512;RFX2..5_RFXANK_RFXAP:1.01575402743;NFY{A,B,C}:1.0058591315;ONECUT1,2:0.984646187788;GCM1,2:0.972036255873;POU1F1:0.970293934363;HIC1:0.936794341438;STAT5{A,B}:0.920637236285;NKX6-1,2:0.916160158798;PAX6:0.793442846435;ZNF143:0.744514304042;AR:0.729313861067;GFI1B:0.709957551361;E2F1..5:0.700504526516;ATF5_CREB3:0.687916794277;CDX1,2,4:0.637588758059;FOXQ1:0.610309168564;XBP1:0.606017694629;MYB:0.544746943499;FOXP1:0.536625321496;MAFB:0.488036266218;EP300:0.484830172524;FOXD3:0.445918121307;GATA4:0.43197645216;GZF1:0.429014756177;TLX2:0.375374586549;FOXN1:0.329350259662;CREB1:0.313922089067;ARID5B:0.307710495254;LMO2:0.303874781117;PAX1,9:0.292732775177;HOX{A5,B5}:0.280895739668;FOXP3:0.278815905096;SOX5:0.269320143037;DBP:0.242670812159;NKX2-1,4:0.240395278653;PDX1:0.221342920392;NANOG{mouse}:0.217130921397;GTF2A1,2:0.168039893924;KLF4:0.165652950405;HBP1_HMGB_SSRP1_UBTF:0.157038651883;HAND1,2:0.153148184671;ELK1,4_GABP{A,B1}:0.149404362312;ZNF384:0.14626835017;NKX3-2:0.122205423564;ZNF423:0.0849873806541;TEF:0.0843071721304;GATA6:0.0757241975373;EN1,2:0.0511699730798;TLX1..3_NFIC{dimer}:0.0329695644344;SP1:0.0067832774803;MYOD1:0.00677742775098;FOXA2:-0.00448574448143;MEF2{A,B,C,D}:-0.00746846006284;MTF1:-0.00786718487272;XCPE1{core}:-0.0121508141535;BPTF:-0.0124535322381;NR3C1:-0.023523168426;EVI1:-0.0349228088781;NFE2L2:-0.0374995243061;HMGA1,2:-0.0445937573065;HOX{A4,D4}:-0.0623196810324;TBX4,5:-0.0669163980557;HNF1A:-0.0727541436544;ESRRA:-0.0758526147622;FOX{F1,F2,J1}:-0.0973984067615;ZBTB16:-0.123993029896;TOPORS:-0.154518882907;IKZF1:-0.156181156105;EBF1:-0.22401642899;FOS_FOS{B,L1}_JUN{B,D}:-0.225488178386;POU2F1..3:-0.260563387977;NFATC1..3:-0.265668627844;TBP:-0.28173888614;SREBF1,2:-0.289954490977;NKX2-2,8:-0.300756378165;TFAP4:-0.307870219376;NKX3-1:-0.316958844953;NR6A1:-0.344475036056;NFIL3:-0.347022907347;RUNX1..3:-0.347231716152;BACH2:-0.36258300423;STAT2,4,6:-0.388519467142;TP53:-0.389897598193;FOSL2:-0.405106877863;NFE2:-0.406053970267;NFIX:-0.420214036958;HNF4A_NR2F1,2:-0.441244203162;FOX{D1,D2}:-0.475586365474;PAX2:-0.477640525152;PITX1..3:-0.509111730063;SPI1:-0.518972544718;NFKB1_REL_RELA:-0.519955665234;SPIB:-0.525620534267;DMAP1_NCOR{1,2}_SMARC:-0.544031929252;TFCP2:-0.575391138202;ZEB1:-0.579624705296;IRF7:-0.592872755219;HSF1,2:-0.607828367729;NFE2L1:-0.610716679512;CEBPA,B_DDIT3:-0.631734742722;IKZF2:-0.663314655958;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.6653405199;UFEwm:-0.671904073111;SNAI1..3:-0.682166000565;HLF:-0.700778437799;MYBL2:-0.741972682551;ATF6:-0.752101169013;SRF:-0.773124096682;TEAD1:-0.78414328288;TAL1_TCF{3,4,12}:-0.788619399407;bHLH_family:-0.841068120708;IRF1,2:-0.844820528744;HMX1:-0.865260004987;ETS1,2:-0.917555166953;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.99559681899;GLI1..3:-1.11042753387;ELF1,2,4:-1.13794872178;ZNF238:-1.15167902807;FOXL1:-1.15804039861;ZNF148:-1.18568835706;HOX{A6,A7,B6,B7}:-1.19548215292;HES1:-1.25720889452;AIRE:-1.28817781688;HIF1A:-1.29822021531;RXR{A,B,G}:-1.30942310671;FOXO1,3,4:-1.36027548755;NR5A1,2:-1.36324883575;TFAP2{A,C}:-1.4572478032;ESR1:-1.48177961464;RXRA_VDR{dimer}:-1.69116839591;ALX4:-1.70066992331;FOX{I1,J2}:-1.78279984029 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11352-117H2;search_select_hide=table117:FF:11352-117H2 | |||
}} | }} | ||
Latest revision as of 17:54, 4 June 2020
| Name: | Neural stem cells, donor2 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs11384 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11384
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11384
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.0579 |
| 10 | 10 | 0.0838 |
| 100 | 100 | 0.406 |
| 101 | 101 | 0.571 |
| 102 | 102 | 0.808 |
| 103 | 103 | 0.341 |
| 104 | 104 | 0.153 |
| 105 | 105 | 0.792 |
| 106 | 106 | 0.0363 |
| 107 | 107 | 0.114 |
| 108 | 108 | 0.615 |
| 109 | 109 | 9.12025e-4 |
| 11 | 11 | 0.015 |
| 110 | 110 | 0.167 |
| 111 | 111 | 0.114 |
| 112 | 112 | 0.0826 |
| 113 | 113 | 0.758 |
| 114 | 114 | 0.00589 |
| 115 | 115 | 0.723 |
| 116 | 116 | 0.262 |
| 117 | 117 | 0.0213 |
| 118 | 118 | 0.154 |
| 119 | 119 | 0.12 |
| 12 | 12 | 0.938 |
| 120 | 120 | 0.643 |
| 121 | 121 | 0.493 |
| 122 | 122 | 0.935 |
| 123 | 123 | 0.556 |
| 124 | 124 | 0.0331 |
| 125 | 125 | 0.93 |
| 126 | 126 | 0.0328 |
| 127 | 127 | 0.324 |
| 128 | 128 | 0.248 |
| 129 | 129 | 0.8 |
| 13 | 13 | 0.015 |
| 130 | 130 | 0.66 |
| 131 | 131 | 0.749 |
| 132 | 132 | 0.862 |
| 133 | 133 | 0.417 |
| 134 | 134 | 0.765 |
| 135 | 135 | 0.567 |
| 136 | 136 | 0.00654 |
| 137 | 137 | 0.394 |
| 138 | 138 | 0.558 |
| 139 | 139 | 0.177 |
| 14 | 14 | 0.679 |
| 140 | 140 | 0.131 |
| 141 | 141 | 0.45 |
| 142 | 142 | 0.657 |
| 143 | 143 | 0.0188 |
| 144 | 144 | 0.731 |
| 145 | 145 | 0.366 |
| 146 | 146 | 0.88 |
| 147 | 147 | 0.938 |
| 148 | 148 | 0.0686 |
| 149 | 149 | 0.0333 |
| 15 | 15 | 0.119 |
| 150 | 150 | 0.219 |
| 151 | 151 | 0.434 |
| 152 | 152 | 0.0333 |
| 153 | 153 | 0.725 |
| 154 | 154 | 0.699 |
| 155 | 155 | 0.31 |
| 156 | 156 | 0.247 |
| 157 | 157 | 0.271 |
| 158 | 158 | 0.773 |
| 159 | 159 | 0.723 |
| 16 | 16 | 0.0273 |
| 160 | 160 | 0.108 |
| 161 | 161 | 0.243 |
| 162 | 162 | 0.794 |
| 163 | 163 | 0.728 |
| 164 | 164 | 0.0108 |
| 165 | 165 | 0.639 |
| 166 | 166 | 0.925 |
| 167 | 167 | 0.188 |
| 168 | 168 | 0.438 |
| 169 | 169 | 0.0122 |
| 17 | 17 | 0.0757 |
| 18 | 18 | 0.387 |
| 19 | 19 | 0.159 |
| 2 | 2 | 0.697 |
| 20 | 20 | 0.301 |
| 21 | 21 | 0.0211 |
| 22 | 22 | 0.132 |
| 23 | 23 | 0.23 |
| 24 | 24 | 0.142 |
| 25 | 25 | 0.633 |
| 26 | 26 | 0.00837 |
| 27 | 27 | 0.506 |
| 28 | 28 | 0.922 |
| 29 | 29 | 0.0244 |
| 3 | 3 | 0.0288 |
| 30 | 30 | 0.843 |
| 31 | 31 | 0.831 |
| 32 | 32 | 0.0119 |
| 33 | 33 | 0.305 |
| 34 | 34 | 0.747 |
| 35 | 35 | 0.65 |
| 36 | 36 | 0.182 |
| 37 | 37 | 0.0268 |
| 38 | 38 | 0.214 |
| 39 | 39 | 0.2 |
| 4 | 4 | 0.529 |
| 40 | 40 | 0.0457 |
| 41 | 41 | 0.938 |
| 42 | 42 | 0.196 |
| 43 | 43 | 0.163 |
| 44 | 44 | 0.0129 |
| 45 | 45 | 0.752 |
| 46 | 46 | 0.127 |
| 47 | 47 | 0.0539 |
| 48 | 48 | 0.0516 |
| 49 | 49 | 0.245 |
| 5 | 5 | 0.274 |
| 50 | 50 | 0.332 |
| 51 | 51 | 0.598 |
| 52 | 52 | 0.639 |
| 53 | 53 | 0.888 |
| 54 | 54 | 0.464 |
| 55 | 55 | 0.264 |
| 56 | 56 | 0.335 |
| 57 | 57 | 0.477 |
| 58 | 58 | 0.196 |
| 59 | 59 | 0.04 |
| 6 | 6 | 0.445 |
| 60 | 60 | 0.0862 |
| 61 | 61 | 0.0194 |
| 62 | 62 | 0.156 |
| 63 | 63 | 0.0989 |
| 64 | 64 | 0.29 |
| 65 | 65 | 0.143 |
| 66 | 66 | 0.992 |
| 67 | 67 | 0.692 |
| 68 | 68 | 0.545 |
| 69 | 69 | 0.247 |
| 7 | 7 | 0.269 |
| 70 | 70 | 0.00985 |
| 71 | 71 | 0.0095 |
| 72 | 72 | 0.3 |
| 73 | 73 | 0.00944 |
| 74 | 74 | 0.131 |
| 75 | 75 | 0.0327 |
| 76 | 76 | 0.266 |
| 77 | 77 | 0.0851 |
| 78 | 78 | 0.0119 |
| 79 | 79 | 0.00711 |
| 8 | 8 | 0.0481 |
| 80 | 80 | 0.802 |
| 81 | 81 | 0.375 |
| 82 | 82 | 0.136 |
| 83 | 83 | 0.157 |
| 84 | 84 | 0.668 |
| 85 | 85 | 0.0615 |
| 86 | 86 | 0.332 |
| 87 | 87 | 0.0236 |
| 88 | 88 | 0.543 |
| 89 | 89 | 0.571 |
| 9 | 9 | 0.46 |
| 90 | 90 | 0.763 |
| 91 | 91 | 0.877 |
| 92 | 92 | 0.28 |
| 93 | 93 | 0.738 |
| 94 | 94 | 0.118 |
| 95 | 95 | 0.00183 |
| 96 | 96 | 0.978 |
| 97 | 97 | 0.912 |
| 98 | 98 | 0.359 |
| 99 | 99 | 0.348 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11384
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000120 human neural stem cell sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000047 (neuronal stem cell)
0000003 (native cell)
0000723 (somatic stem cell)
0000048 (multi fate stem cell)
0000548 (animal cell)
0002371 (somatic cell)
0002319 (neural cell)
0000255 (eukaryotic cell)
0000034 (stem cell)
UBERON: Anatomy
0000468 (multi-cellular organism)
0004121 (ectoderm-derived structure)
0011216 (organ system subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0010317 (germ layer / neural crest derived structure)
0001017 (central nervous system)
0001016 (nervous system)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000120 (human neural stem cell sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000133 (neurectodermal cell)
CL:0000221 (ectodermal cell)
