Personal tools

User:Serkan: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
 
(74 intermediate revisions by the same user not shown)
Line 1: Line 1:
<html>
<html>
<script type="text/javascript" language="javascript" src="/resource_browser/rb_js/datatables/media/js/jquery.dataTables.min.js"></script>
<script type="text/javascript" language="javascript" src="/resource_browser/rb_js/datatables/extras/TableTools/media/js/TableTools.min.js"></script>
<style type="text/css" title="currentStyle">
<style type="text/css" title="currentStyle">
@import "/resource_browser/rb_js/datatables/media/css/jquery.dataTables.css";
@import "/resource_browser/rb_js/datatables/media/css/jquery.dataTables.css";
@import "/resource_browser/rb_js/datatables/extras/TableTools/media/css/TableTools.css";
</style>
</style>
<script type="text/javascript" src="/resource_browser/rb_js/datatables/media/js/jquery.dataTables.min.js"></script>


<script type="text/javascript">
<script type="text/javascript">
$(document).ready(function() {
$(document).ready(function() {
$('.tf_table').dataTable( {
motif_table=$('.known_motif_list').dataTable( {
"iDisplayLength": 25,
"iDisplayLength": 50,
"aLengthMenu": [[25, 100, -1], [25, 100, "All"]],
"aLengthMenu": [[25, 100, -1], [25, 100, "All"]],
"aaSorting": [[1, "asc"]]
"aaSorting": [[1, "asc"]],
"aoColumnDefs": [         
            { "aTargets": [5],
              "fnRender": function (obj ) {
                var uri =logoLocator($(obj.aData[0]).text(),$(obj.aData[0]).text());
                return uri;
                }
               
            },
            {"aTargets":[2], "fnRender": function ( obj ) {
                  var motif_id = $(obj.aData[ obj.iDataColumn ]).text();
                  var motif_prefix = motif_id ;
                  var motif_db = obj.aData[obj.iDataColumn-1];
                  var sReturn =motif_db+"_motif:"+motif_id;
                  return '<a href=/resource_browser/'+sReturn+'>'+motif_id+'</a>';}
}, 
{"aTargets":[1], "fnRender": function ( obj ) {
                  var temp= $(obj.aData[ obj.iDataColumn ]).text();             
                  return temp;}
},
{"aTargets":[4], "fnRender": function ( obj ) {
                  var temp= $(obj.aData[ obj.iDataColumn ]).text(); 
                         
                  return  parseFloat(temp).toFixed(5); }
}                 
        ]
} );
} );
$('.dataTables_scrollBody').css("resize", "vertical");
motif_table_tools = new TableTools( motif_table, {"sSwfPath": "/resource_browser/rb_js/datatables/extras/TableTools/media/swf/copy_csv_xls_pdf.swf", "aButtons": [ {"sExtends": "copy", "mColumns": "visible"}, {"sExtends": "csv", "mColumns": "visible"}, {"sExtends": "pdf", "mColumns": "visible"} ]});
$('#motif_export_tool').before( motif_table_tools.dom.container );
} );
} );
</script>
</html>


function hasWhiteSpace(s) {
  return s.indexOf(' ') >= 0;
}
function logoLocator(motif_db,motif_id){
var index = motif_id.indexOf(' ');


{{#ask:[[Category:JASPAR_motif]]]]|mainlabel=KNOWN ID|?name=name|format=ttable|class=tf_table|limit=1100|searchlabel=}}
if (index >= 0) {
    motif_id= motif_id.substr(0, index - 1) +"_"+ motif_id.substr(index);
}


{{Serkan_test01|word01=yes,serkan}}
var tmp ="/resource_browser/seqlogos/"+ "known_motifs"+"_201304"+"/"+motif_id.toLowerCase()+".png";
var uri = encodeURI(tmp);
return number_prefix='<img src="'+uri+'" width ="80" height = "20">';
}


{{#ask: [[Category:JASPAR_motif]]
function loqoNumberPrefixLocator(motif_db)
|mainlabel=JASPAR_ID
{
|?Name
var number_prefix ="";
|format=ttable|class=tf_table|searchlabel=|limit=1400
}}


if(motif_db == "HOCOMOCO"){
number_prefix = "426";
}
else if(motif_db== "JASPAR"){
number_prefix = "130";
}
else if(motif_db == "HOMER"){
number_prefix = "138";
}
else if(motif_db == "SWISSREGULON"){
number_prefix = "190";
}
else if(motif_db == "UNIPROBE"){
number_prefix = "413";
}
else if(motif_db == "ENCODE"){
number_prefix = "683";
}
else if(motif_db == "KNOWN"){
number_prefix="11"
}
return number_prefix;
}


{{#ask:[[Category:FF_Samples]]|[[Sample_species::Human (Homo sapiens)]]
</script>
|mainlabel=FF ontology id
</html>
|?Name
|?Sample_category
|?datafreeze_phase
|limit=20
|searchlabel=}}


{{#ask:[[Concept:FF_samples_withname]]
{NAMESPACE}}<br>
|[[Sample_species::Human (Homo sapiens)]]
{{PAGENAME}}<br>
|mainlabel=FF ontology id
{{BASEPAGENAME}}<br>
|?Name
{{BASEPAGENAMEE}}<br>
|?Sample_category
{{SUBPAGENAME}} <br>
|?datafreeze_phase
{{SUBPAGENAMEE}}<br>
|limit=20
{{FULLPAGENAME}}<br>
|searchlabel=}}
{{TALKSPACE}} <br>
{{TALKPAGENAME}} <br>
{{SUBJECTSPACE}}<br>
{{ARTICLESPACE}}<br>
{{SUBJECTPAGENAME}}<br>
{{ARTICLEPAGENAME}}<br>


{{#ask:[[Concept:FF_samples_withname]]
<span id = "motif_export_tool"></span>
|[[Sample_species::Mouse (Mus musculus)]]
{{#ask:[[Category:MotifCluster2013March]]
|mainlabel=FF ontology id
|?Database=motif db
|?Name
|?Motifid=motif id
|?Sample_category
|?Name=motif name
|?datafreeze_phase
|?Score=score
|limit=20
|?=Logo
|searchlabel=}}
|format=ttable
|class=known_motif_list
|offset=0
|limit=1000
|mainlabel=name
}}

Latest revision as of 17:11, 20 May 2013

{NAMESPACE}}
Serkan
Serkan
Serkan
Serkan
Serkan
User:Serkan
User talk
User talk:Serkan
User
User
User:Serkan
User:Serkan

motif dbmotif idmotif namescore
Lhx8_2247.2
ZEB1.p2
Sp4_secondary
Cphx_3484.1
Tcfap2c_secondary
TLX1_f1
CDX1,2,4.p2
ZBTB6.p2
E2F2_secondary
SPZ1.p2
SPZ1_f1
MA0065.2
Gata6_secondary
PBX1_MCF7-PBX1-ChIP-Seq(GSE28007)
SMAD1_si
Rhox11_2205.1
ZBTB33_GM12878-ZBTB33-ChIP-Seq
MAZ_f1
CDC5L.p2
ZBT7B_si
POU6F1.p2
KLF15_f1
MBD2_si
Gcm1_primary
EWSR1-FLI1.p2
MSX1,2.p2
ARID5B.p2
Osr1_secondary
Osr1_primary
Sp100_primary
ZNF263_K562-Znf263-ChIP-Seq
EN1,2.p2
STAT1_HelaS3-STAT1-ChIP-Seq
SOX17_f2
Isgf3g_secondary
Sox7_secondary
Zbtb12_secondary
FUBP1_f1
DMC1_Testis-DMC1-ChIP-Seq
HMX1.p2
IRF5_f1
EOMES_f1
IRC900814_secondary
CDX2_mES-Cdx2-ChIP-Seq
Zfp187_primary
HXD10_f1
POU3F1..4.p2
EBNA1_Raji-EBNA1-ChIP-Seq(GSE30709)
Sox15_secondary
Arid5a_secondary
Gabpa_secondary
ZN350_f1
Irf3_secondary
Zbtb3_secondary
STAT2_f1
HOX(A5,B5).p2
MCR_f1
ZBTB4!METH_f1
TAL1_motifB
MYBB_f1
FOXC2_f1
EPAS1_si
Homez_1063.2
Sox5_secondary
PURA_f1
CEBPB_f1
TEF_f1
Tcf3_secondary
Zfp410_primary
HXA7_f1
ZBT7A_f1
ATF5_si
TEAD4_f1
FOXP3.p2
Zfp187_secondary
MA0035.2
MA0164.1
Zfp161_secondary
GZF1.p2
Zbtb3_primary
PAX2_f1
PAX8.p2
Rxra_secondary
NR2E3_f1
PAX8_f1
PRDM14_H1-PRDM14-ChIP-Seq
NHLH1,2.p2
GTF2A1,2.p2
PAX5_si
Arid3a_secondary
PROP1_f1
PTF1A_f1
TGIF1_f1
ALX1_si
ZEP2_si
HXD13_f1
LEF1_f1
AIRE.p2
HLTF_f1
HESX1_f1
BHE41_f1
NANOG(mouse).p2
Zfp105_secondary
MLXPL_f1
ZBTB16.p2
BRAC_si
Glis2_secondary
MA0080.2
CREB1_f1
ZBTB4_si
ALX1.p2
Sp100_secondary
ARI3A_do
Arid5a_primary
HMGA2_f1
PAX3_Rh4-PAX3
Gcm1_secondary
Atf1_secondary
E2F6_f1
Rara_secondary
MA0003.1
ZEB1_do
TGIF1_si
NKX25_f1
RELA_GM12787-p65-ChIP-Seq
MYBL2_Hela-BMYB-ChIPSeq(GSE27030)
GCR_do
HIF1A_si
ZN219_f1
NFYB_f1
POU5F1_mES-Oct4-ChIP-Seq
KLF4_f2
NFATC1..3.p2
ZIC1_f1
RARA_f1
NFE2L1.p2
MA0112.2
RFX1..5_RFXANK_RFXAP.p2
FOXO1_si
SMAD3_f1
RUNX1_Jurkat-RUNX1-ChIP-Seq
Sry_primary
ZNF143.p2
TP53.p2
MAFB.p2
BPTF.p2
NANOG_mES-Nanog-ChIP-Seq
MA0108.2
Six6_2267.5
SOX5.p2
MEF2D_f1
GFI1.p2
PAX5.p2
SRF_do
POU5F1_SOX2(dimer).p2
Zic1_primary
Irx4_2242.3
NKX2-2,8.p2
MZF1.p2
NKX3-1.p2
PPARA_f1
Bbx_primary
CTCF_f2
MTF1_f1
HSF1_f2
HNF1B_f1
ATF6A_si
Hmbox1_2674.1
NFIA+NFIB+NFIC+NFIX_f2
Srf_secondary
MA0090.1
JUN_f1
COE1_f2
Sox8_secondary
KLF8_f1
MA0146.1
SRBP1_f2
RXRA_VDR(dimer).p2
TFCP2_f1
REST_f1
Zfp161_primary
ARNT2_si
OTX2_si
Irf6_secondary
NRF1_f1
Zic2_secondary
RARA_f2
RREB1_si
EVI1.p2
Hic1_secondary
NFIA+NFIB+NFIC+NFIX_si
BRCA1_f1
YY1.p2
HXB6_f1
Sox18_secondary
Rfx3_secondary
Ehf_secondary
HMGA1,2.p2
MA0155.1
PLAG1_f1
MA0068.1
HINFP_f1
Klf7_secondary
POU1F1.p2